Multiple sequence alignment - TraesCS2B01G476500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G476500 chr2B 100.000 2291 0 0 1 2291 673240943 673243233 0.000000e+00 4231
1 TraesCS2B01G476500 chr2B 84.943 611 64 11 778 1363 673227413 673228020 5.450000e-166 593
2 TraesCS2B01G476500 chr2B 81.443 679 88 21 829 1487 673628500 673629160 2.610000e-144 521
3 TraesCS2B01G476500 chr2B 81.259 667 81 24 841 1482 673170520 673171167 1.220000e-137 499
4 TraesCS2B01G476500 chr2B 87.940 199 18 6 1871 2064 673228397 673228594 1.770000e-56 230
5 TraesCS2B01G476500 chr2A 85.123 894 74 24 645 1509 703402637 703403500 0.000000e+00 859
6 TraesCS2B01G476500 chr2A 84.267 928 74 38 643 1507 703399855 703400773 0.000000e+00 839
7 TraesCS2B01G476500 chr2A 84.094 767 69 29 778 1500 703381780 703382537 0.000000e+00 691
8 TraesCS2B01G476500 chr2A 85.903 681 46 18 1537 2197 703403486 703404136 0.000000e+00 680
9 TraesCS2B01G476500 chr2A 83.092 692 75 25 822 1500 703448058 703448720 1.960000e-165 592
10 TraesCS2B01G476500 chr2A 94.005 367 22 0 1831 2197 703401742 703402108 7.150000e-155 556
11 TraesCS2B01G476500 chr2A 81.560 705 72 27 841 1509 703353642 703354324 1.560000e-146 529
12 TraesCS2B01G476500 chr2A 82.222 405 53 13 841 1242 703207483 703207871 4.720000e-87 331
13 TraesCS2B01G476500 chr2A 87.826 230 21 4 1591 1818 703400791 703401015 1.750000e-66 263
14 TraesCS2B01G476500 chr2A 87.166 187 18 6 1871 2052 703382764 703382949 8.290000e-50 207
15 TraesCS2B01G476500 chr2A 94.118 85 5 0 2193 2277 703402158 703402242 1.850000e-26 130
16 TraesCS2B01G476500 chr2D 86.248 669 50 23 853 1481 562895623 562896289 0.000000e+00 688
17 TraesCS2B01G476500 chr2D 86.623 613 52 20 778 1362 562858856 562859466 0.000000e+00 651
18 TraesCS2B01G476500 chr2D 88.722 532 39 9 826 1339 563008787 563009315 4.150000e-177 630
19 TraesCS2B01G476500 chr2D 80.786 458 71 11 841 1296 562684865 562685307 2.180000e-90 342
20 TraesCS2B01G476500 chr2D 86.577 298 34 5 1 297 562892593 562892885 7.890000e-85 324
21 TraesCS2B01G476500 chr2D 87.302 189 17 7 1871 2054 562859845 562860031 2.310000e-50 209
22 TraesCS2B01G476500 chr2D 88.742 151 13 4 1931 2080 562896801 562896948 5.030000e-42 182
23 TraesCS2B01G476500 chr2D 92.754 69 5 0 2129 2197 562851989 562852057 1.450000e-17 100


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G476500 chr2B 673240943 673243233 2290 False 4231.0 4231 100.000000 1 2291 1 chr2B.!!$F2 2290
1 TraesCS2B01G476500 chr2B 673628500 673629160 660 False 521.0 521 81.443000 829 1487 1 chr2B.!!$F3 658
2 TraesCS2B01G476500 chr2B 673170520 673171167 647 False 499.0 499 81.259000 841 1482 1 chr2B.!!$F1 641
3 TraesCS2B01G476500 chr2B 673227413 673228594 1181 False 411.5 593 86.441500 778 2064 2 chr2B.!!$F4 1286
4 TraesCS2B01G476500 chr2A 703448058 703448720 662 False 592.0 592 83.092000 822 1500 1 chr2A.!!$F3 678
5 TraesCS2B01G476500 chr2A 703399855 703404136 4281 False 554.5 859 88.540333 643 2277 6 chr2A.!!$F5 1634
6 TraesCS2B01G476500 chr2A 703353642 703354324 682 False 529.0 529 81.560000 841 1509 1 chr2A.!!$F2 668
7 TraesCS2B01G476500 chr2A 703381780 703382949 1169 False 449.0 691 85.630000 778 2052 2 chr2A.!!$F4 1274
8 TraesCS2B01G476500 chr2D 563008787 563009315 528 False 630.0 630 88.722000 826 1339 1 chr2D.!!$F3 513
9 TraesCS2B01G476500 chr2D 562858856 562860031 1175 False 430.0 651 86.962500 778 2054 2 chr2D.!!$F4 1276
10 TraesCS2B01G476500 chr2D 562892593 562896948 4355 False 398.0 688 87.189000 1 2080 3 chr2D.!!$F5 2079

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
321 322 0.0293 TGCGCAAAGACTCAAAGTGC 59.971 50.0 8.16 0.0 36.34 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2197 7631 0.163788 GCACGTGAATTGGTCGTCAG 59.836 55.0 22.23 0.0 35.62 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 7.835634 ATAAACGTGTGTGAAATTTTTGGTT 57.164 28.000 0.00 0.00 0.00 3.67
70 71 5.980116 TGTGTGAAATTTTTGGTTGTATCCG 59.020 36.000 0.00 0.00 0.00 4.18
72 73 6.866248 GTGTGAAATTTTTGGTTGTATCCGAT 59.134 34.615 0.00 0.00 0.00 4.18
81 82 3.181459 TGGTTGTATCCGATGTACCCATG 60.181 47.826 0.00 0.00 0.00 3.66
83 84 3.744238 TGTATCCGATGTACCCATGTG 57.256 47.619 0.00 0.00 0.00 3.21
88 89 0.726827 CGATGTACCCATGTGCACAC 59.273 55.000 24.37 8.94 40.01 3.82
107 108 5.728471 CACACCAGAGAGATGTTGATAACT 58.272 41.667 0.00 0.00 0.00 2.24
115 116 6.889177 AGAGAGATGTTGATAACTGAGTGAGA 59.111 38.462 0.00 0.00 0.00 3.27
121 122 6.682746 TGTTGATAACTGAGTGAGAGAAGAC 58.317 40.000 0.00 0.00 0.00 3.01
140 141 6.378564 AGAAGACGTAGATGGAGAAGATGAAA 59.621 38.462 0.00 0.00 0.00 2.69
143 144 3.733224 CGTAGATGGAGAAGATGAAAGCG 59.267 47.826 0.00 0.00 0.00 4.68
172 173 4.800249 GCATATGGAGCTTGAGAGGAAGAG 60.800 50.000 4.56 0.00 0.00 2.85
173 174 1.566211 TGGAGCTTGAGAGGAAGAGG 58.434 55.000 0.00 0.00 0.00 3.69
175 176 1.567357 GAGCTTGAGAGGAAGAGGGT 58.433 55.000 0.00 0.00 0.00 4.34
183 184 2.433970 GAGAGGAAGAGGGTGATGGAAG 59.566 54.545 0.00 0.00 0.00 3.46
197 198 4.880120 GTGATGGAAGCATTGAGATTGAGA 59.120 41.667 0.00 0.00 30.84 3.27
200 201 5.169992 TGGAAGCATTGAGATTGAGAAGA 57.830 39.130 0.00 0.00 0.00 2.87
201 202 5.563592 TGGAAGCATTGAGATTGAGAAGAA 58.436 37.500 0.00 0.00 0.00 2.52
203 204 5.066246 GGAAGCATTGAGATTGAGAAGAAGG 59.934 44.000 0.00 0.00 0.00 3.46
205 206 3.242673 GCATTGAGATTGAGAAGAAGGCG 60.243 47.826 0.00 0.00 0.00 5.52
206 207 3.961480 TTGAGATTGAGAAGAAGGCGA 57.039 42.857 0.00 0.00 0.00 5.54
207 208 4.478206 TTGAGATTGAGAAGAAGGCGAT 57.522 40.909 0.00 0.00 0.00 4.58
216 217 0.250513 AAGAAGGCGATGAGGGTCAC 59.749 55.000 0.00 0.00 0.00 3.67
218 219 1.945354 GAAGGCGATGAGGGTCACGA 61.945 60.000 0.00 0.00 0.00 4.35
227 228 0.895530 GAGGGTCACGAGATTCACCA 59.104 55.000 0.00 0.00 0.00 4.17
236 237 4.523173 TCACGAGATTCACCAAGAACTAGT 59.477 41.667 0.00 0.00 39.49 2.57
258 259 3.486263 GAGAATCGTGTTGGCCGG 58.514 61.111 0.00 0.00 0.00 6.13
261 262 0.108329 AGAATCGTGTTGGCCGGTAG 60.108 55.000 1.90 0.00 0.00 3.18
265 266 0.038343 TCGTGTTGGCCGGTAGTAAC 60.038 55.000 1.90 4.36 0.00 2.50
308 309 3.364441 GCTCACCACCATGCGCAA 61.364 61.111 17.11 0.00 30.51 4.85
309 310 2.918345 GCTCACCACCATGCGCAAA 61.918 57.895 17.11 0.00 30.51 3.68
310 311 1.210931 CTCACCACCATGCGCAAAG 59.789 57.895 17.11 11.88 0.00 2.77
311 312 1.228094 TCACCACCATGCGCAAAGA 60.228 52.632 17.11 1.67 0.00 2.52
312 313 1.081242 CACCACCATGCGCAAAGAC 60.081 57.895 17.11 0.00 0.00 3.01
313 314 1.228245 ACCACCATGCGCAAAGACT 60.228 52.632 17.11 0.00 0.00 3.24
314 315 1.237285 ACCACCATGCGCAAAGACTC 61.237 55.000 17.11 0.00 0.00 3.36
315 316 1.236616 CCACCATGCGCAAAGACTCA 61.237 55.000 17.11 0.00 0.00 3.41
316 317 0.592637 CACCATGCGCAAAGACTCAA 59.407 50.000 17.11 0.00 0.00 3.02
317 318 1.001487 CACCATGCGCAAAGACTCAAA 60.001 47.619 17.11 0.00 0.00 2.69
318 319 1.267806 ACCATGCGCAAAGACTCAAAG 59.732 47.619 17.11 0.00 0.00 2.77
319 320 1.267806 CCATGCGCAAAGACTCAAAGT 59.732 47.619 17.11 0.00 0.00 2.66
320 321 2.313234 CATGCGCAAAGACTCAAAGTG 58.687 47.619 17.11 0.00 0.00 3.16
321 322 0.029300 TGCGCAAAGACTCAAAGTGC 59.971 50.000 8.16 0.00 36.34 4.40
322 323 0.029300 GCGCAAAGACTCAAAGTGCA 59.971 50.000 0.30 0.00 34.87 4.57
323 324 1.746760 CGCAAAGACTCAAAGTGCAC 58.253 50.000 9.40 9.40 34.87 4.57
324 325 1.063912 CGCAAAGACTCAAAGTGCACA 59.936 47.619 21.04 0.00 34.87 4.57
325 326 2.724349 GCAAAGACTCAAAGTGCACAG 58.276 47.619 21.04 10.09 35.28 3.66
326 327 2.542411 GCAAAGACTCAAAGTGCACAGG 60.542 50.000 21.04 7.87 35.28 4.00
327 328 2.945008 CAAAGACTCAAAGTGCACAGGA 59.055 45.455 21.04 11.96 0.00 3.86
328 329 3.281727 AAGACTCAAAGTGCACAGGAA 57.718 42.857 21.04 0.47 0.00 3.36
329 330 3.281727 AGACTCAAAGTGCACAGGAAA 57.718 42.857 21.04 0.00 0.00 3.13
332 333 3.088532 ACTCAAAGTGCACAGGAAACAA 58.911 40.909 21.04 0.00 0.00 2.83
347 348 9.048446 CACAGGAAACAAATCTTTGATTCATTT 57.952 29.630 20.30 9.37 45.85 2.32
355 357 9.807649 ACAAATCTTTGATTCATTTACTATGCC 57.192 29.630 9.53 0.00 40.55 4.40
361 363 9.674824 CTTTGATTCATTTACTATGCCTGAATC 57.325 33.333 13.81 13.81 46.30 2.52
408 410 7.545265 TCATATTTGAATTGCTAGGTTGTTTGC 59.455 33.333 0.00 0.00 0.00 3.68
450 453 9.956797 GAATTGTTGTGTGCAATATTTATTGTC 57.043 29.630 10.99 5.42 43.72 3.18
470 473 4.095782 TGTCGAATGATCTACGTCACATGA 59.904 41.667 0.00 0.00 0.00 3.07
488 491 6.209192 TCACATGAGTTGCATAAATTTGGAGT 59.791 34.615 0.00 0.00 34.82 3.85
498 501 6.172630 GCATAAATTTGGAGTTGGGAAATGT 58.827 36.000 0.00 0.00 0.00 2.71
509 513 5.010282 AGTTGGGAAATGTGGATACTGTTC 58.990 41.667 0.00 0.00 37.61 3.18
510 514 4.927267 TGGGAAATGTGGATACTGTTCT 57.073 40.909 0.00 0.00 37.61 3.01
516 520 5.615925 AATGTGGATACTGTTCTAGGGAC 57.384 43.478 0.00 0.00 37.61 4.46
522 526 5.768662 TGGATACTGTTCTAGGGACGAATAG 59.231 44.000 0.00 0.00 36.20 1.73
529 533 4.676799 TCTAGGGACGAATAGATGGGAT 57.323 45.455 0.00 0.00 0.00 3.85
535 539 5.073691 AGGGACGAATAGATGGGATTCAATT 59.926 40.000 0.00 0.00 33.66 2.32
567 571 2.775890 CAGACATGCCTGGACATATCC 58.224 52.381 0.22 0.00 46.48 2.59
585 589 1.375396 CGCGGACAAATGAGGGTCA 60.375 57.895 0.00 0.00 35.74 4.02
599 603 9.191995 CAAATGAGGGTCAAATTTAACACTTAC 57.808 33.333 0.00 0.00 0.00 2.34
601 605 5.771165 TGAGGGTCAAATTTAACACTTACCC 59.229 40.000 0.00 0.00 44.70 3.69
616 620 7.133133 ACACTTACCCTTGAAGAAGTTTAGA 57.867 36.000 0.00 0.00 29.73 2.10
617 621 7.217906 ACACTTACCCTTGAAGAAGTTTAGAG 58.782 38.462 0.00 0.00 29.73 2.43
620 624 8.661345 ACTTACCCTTGAAGAAGTTTAGAGAAT 58.339 33.333 0.00 0.00 0.00 2.40
625 629 8.940952 CCCTTGAAGAAGTTTAGAGAATAACAG 58.059 37.037 0.00 0.00 0.00 3.16
626 630 8.447053 CCTTGAAGAAGTTTAGAGAATAACAGC 58.553 37.037 0.00 0.00 0.00 4.40
627 631 8.902540 TTGAAGAAGTTTAGAGAATAACAGCA 57.097 30.769 0.00 0.00 0.00 4.41
629 633 8.367911 TGAAGAAGTTTAGAGAATAACAGCAGA 58.632 33.333 0.00 0.00 0.00 4.26
630 634 9.209175 GAAGAAGTTTAGAGAATAACAGCAGAA 57.791 33.333 0.00 0.00 0.00 3.02
631 635 9.561069 AAGAAGTTTAGAGAATAACAGCAGAAA 57.439 29.630 0.00 0.00 0.00 2.52
632 636 9.561069 AGAAGTTTAGAGAATAACAGCAGAAAA 57.439 29.630 0.00 0.00 0.00 2.29
640 644 9.598517 AGAGAATAACAGCAGAAAATAAGAGAG 57.401 33.333 0.00 0.00 0.00 3.20
641 645 9.593134 GAGAATAACAGCAGAAAATAAGAGAGA 57.407 33.333 0.00 0.00 0.00 3.10
674 1023 2.763448 GAGAACAGAGCTAGTCCACCAT 59.237 50.000 0.00 0.00 0.00 3.55
675 1024 2.763448 AGAACAGAGCTAGTCCACCATC 59.237 50.000 0.00 0.00 0.00 3.51
683 1032 1.757118 CTAGTCCACCATCACGACCAT 59.243 52.381 0.00 0.00 0.00 3.55
699 1051 2.228822 GACCATTCGCACCACAAAATCT 59.771 45.455 0.00 0.00 0.00 2.40
724 1076 3.330701 TCAAACCCAGCCTCTATTTCAGT 59.669 43.478 0.00 0.00 0.00 3.41
733 1085 6.881602 CCAGCCTCTATTTCAGTTTTTCTACT 59.118 38.462 0.00 0.00 0.00 2.57
752 1109 6.106673 TCTACTCGAAAGGAAGCTAATTTGG 58.893 40.000 0.00 0.00 0.00 3.28
753 1110 4.906618 ACTCGAAAGGAAGCTAATTTGGA 58.093 39.130 0.00 0.00 0.00 3.53
754 1111 5.501156 ACTCGAAAGGAAGCTAATTTGGAT 58.499 37.500 0.00 0.00 0.00 3.41
757 1114 7.775561 ACTCGAAAGGAAGCTAATTTGGATAAT 59.224 33.333 0.00 0.00 0.00 1.28
758 1115 8.519799 TCGAAAGGAAGCTAATTTGGATAATT 57.480 30.769 0.00 0.00 0.00 1.40
759 1116 8.966868 TCGAAAGGAAGCTAATTTGGATAATTT 58.033 29.630 0.00 0.00 0.00 1.82
764 1121 7.770433 AGGAAGCTAATTTGGATAATTTTTGGC 59.230 33.333 0.00 0.00 0.00 4.52
765 1122 7.552330 GGAAGCTAATTTGGATAATTTTTGGCA 59.448 33.333 0.00 0.00 0.00 4.92
766 1123 9.112725 GAAGCTAATTTGGATAATTTTTGGCAT 57.887 29.630 0.00 0.00 0.00 4.40
774 1131 9.799106 TTTGGATAATTTTTGGCATAAAAAGGA 57.201 25.926 7.19 6.95 33.28 3.36
775 1132 9.972106 TTGGATAATTTTTGGCATAAAAAGGAT 57.028 25.926 7.19 10.17 33.28 3.24
783 1140 9.620259 TTTTTGGCATAAAAAGGATAAACTTGT 57.380 25.926 0.40 0.00 31.05 3.16
799 1156 2.026822 ACTTGTGGGAACTGGCTCTATG 60.027 50.000 0.00 0.00 0.00 2.23
839 1337 0.468226 AACAGTCCTGTCTTTCGCCA 59.532 50.000 0.00 0.00 44.13 5.69
891 3128 2.045926 CCCTCCGCTTCACCCAAG 60.046 66.667 0.00 0.00 34.85 3.61
927 3179 0.851332 TCCTCTGTCTCCCTCTCCCA 60.851 60.000 0.00 0.00 0.00 4.37
975 3283 1.968703 CTCTGCTCAGCTTTGCTCGC 61.969 60.000 0.00 0.00 36.40 5.03
1161 3476 1.291588 CTTCTGCAGCGAGGAGTGT 59.708 57.895 9.47 0.00 36.95 3.55
1197 3512 1.652012 GCTCGACGCTATCTGCTCT 59.348 57.895 0.00 0.00 40.11 4.09
1306 6357 1.146358 CTAGCCGGCAAAGCTCGTAC 61.146 60.000 31.54 0.00 41.83 3.67
1325 6378 3.021177 ACCCCAGTAGAGTAGAGCTTC 57.979 52.381 0.00 0.00 0.00 3.86
1326 6379 2.312140 ACCCCAGTAGAGTAGAGCTTCA 59.688 50.000 0.00 0.00 0.00 3.02
1372 6448 1.448922 CCGATCTGGTCTCTCCGGTC 61.449 65.000 0.00 0.00 42.90 4.79
1407 6485 2.490115 AGACGGAGAAGCAGTGAAGTAG 59.510 50.000 0.00 0.00 0.00 2.57
1408 6486 2.229302 GACGGAGAAGCAGTGAAGTAGT 59.771 50.000 0.00 0.00 0.00 2.73
1409 6487 3.418995 ACGGAGAAGCAGTGAAGTAGTA 58.581 45.455 0.00 0.00 0.00 1.82
1410 6488 3.440872 ACGGAGAAGCAGTGAAGTAGTAG 59.559 47.826 0.00 0.00 0.00 2.57
1411 6489 3.732471 CGGAGAAGCAGTGAAGTAGTAGC 60.732 52.174 0.00 0.00 0.00 3.58
1412 6490 3.193691 GGAGAAGCAGTGAAGTAGTAGCA 59.806 47.826 0.00 0.00 0.00 3.49
1413 6491 4.170256 GAGAAGCAGTGAAGTAGTAGCAC 58.830 47.826 0.00 0.00 0.00 4.40
1428 6508 7.852263 AGTAGTAGCACCTATCAAAGTTCATT 58.148 34.615 0.00 0.00 0.00 2.57
1482 6580 2.665603 GCGTCCTTCTCCTGGCTT 59.334 61.111 0.00 0.00 0.00 4.35
1484 6582 1.219393 CGTCCTTCTCCTGGCTTCC 59.781 63.158 0.00 0.00 0.00 3.46
1500 6598 1.750778 CTTCCTTTTGCCTGTGTGTGT 59.249 47.619 0.00 0.00 0.00 3.72
1501 6599 1.102154 TCCTTTTGCCTGTGTGTGTG 58.898 50.000 0.00 0.00 0.00 3.82
1502 6600 0.817013 CCTTTTGCCTGTGTGTGTGT 59.183 50.000 0.00 0.00 0.00 3.72
1503 6601 1.469595 CCTTTTGCCTGTGTGTGTGTG 60.470 52.381 0.00 0.00 0.00 3.82
1504 6602 1.202114 CTTTTGCCTGTGTGTGTGTGT 59.798 47.619 0.00 0.00 0.00 3.72
1505 6603 0.525311 TTTGCCTGTGTGTGTGTGTG 59.475 50.000 0.00 0.00 0.00 3.82
1506 6604 0.607762 TTGCCTGTGTGTGTGTGTGT 60.608 50.000 0.00 0.00 0.00 3.72
1507 6605 1.304509 TGCCTGTGTGTGTGTGTGTG 61.305 55.000 0.00 0.00 0.00 3.82
1508 6606 1.305219 GCCTGTGTGTGTGTGTGTGT 61.305 55.000 0.00 0.00 0.00 3.72
1509 6607 0.447406 CCTGTGTGTGTGTGTGTGTG 59.553 55.000 0.00 0.00 0.00 3.82
1510 6608 1.155889 CTGTGTGTGTGTGTGTGTGT 58.844 50.000 0.00 0.00 0.00 3.72
1511 6609 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1512 6610 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1513 6611 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1514 6612 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1515 6613 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1516 6614 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1517 6615 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1518 6616 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1519 6617 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1520 6618 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1521 6619 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1522 6620 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1523 6621 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1524 6622 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1525 6623 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1526 6624 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1527 6625 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1528 6626 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1529 6627 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1530 6628 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1531 6629 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1532 6630 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1533 6631 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1534 6632 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1535 6633 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1536 6634 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1537 6635 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1564 6667 4.527509 TTGTTTGTTTGAGGCTTGTGAA 57.472 36.364 0.00 0.00 0.00 3.18
1574 6677 3.726517 CTTGTGAACCGCGGCTGG 61.727 66.667 28.58 0.59 0.00 4.85
1575 6678 4.555709 TTGTGAACCGCGGCTGGT 62.556 61.111 28.58 8.22 46.67 4.00
1625 6743 7.368480 CAAACCATTTGGAAATCCTCATTTC 57.632 36.000 3.01 0.00 45.14 2.17
1626 6744 6.684897 AACCATTTGGAAATCCTCATTTCA 57.315 33.333 3.01 0.00 46.94 2.69
1634 6752 6.882656 TGGAAATCCTCATTTCAACACAAAA 58.117 32.000 9.15 0.00 46.94 2.44
1638 6756 9.654417 GAAATCCTCATTTCAACACAAAATTTG 57.346 29.630 3.89 3.89 45.19 2.32
1644 6762 3.634397 TCAACACAAAATTTGGCCCAA 57.366 38.095 10.71 0.00 34.12 4.12
1645 6763 3.955471 TCAACACAAAATTTGGCCCAAA 58.045 36.364 12.07 12.07 37.75 3.28
1646 6764 4.530875 TCAACACAAAATTTGGCCCAAAT 58.469 34.783 16.03 16.03 44.62 2.32
1719 6842 3.890756 TCGGTCCGATAAAACTATGCCTA 59.109 43.478 10.71 0.00 0.00 3.93
1748 6878 9.429359 CCTAAATCTAGTATTTGTAGAGCATGG 57.571 37.037 0.00 0.00 30.04 3.66
1770 6954 0.661483 GCAGGCTGCTTGAACGAAAC 60.661 55.000 31.37 0.00 40.96 2.78
1785 6969 6.703319 TGAACGAAACTATGTATTCCCTTCA 58.297 36.000 0.00 0.00 0.00 3.02
1786 6970 7.335627 TGAACGAAACTATGTATTCCCTTCAT 58.664 34.615 0.00 0.00 0.00 2.57
1787 6971 7.494625 TGAACGAAACTATGTATTCCCTTCATC 59.505 37.037 0.00 0.00 0.00 2.92
1803 6991 6.934645 TCCCTTCATCCATAATAATTGTCGTC 59.065 38.462 0.00 0.00 0.00 4.20
1809 6997 5.158494 TCCATAATAATTGTCGTCGGATCG 58.842 41.667 0.00 0.00 0.00 3.69
1818 7006 2.835705 CGTCGGATCGGAGGGAGTG 61.836 68.421 13.50 0.00 0.00 3.51
1824 7012 1.002274 ATCGGAGGGAGTGGCTTCT 59.998 57.895 0.00 0.00 0.00 2.85
1826 7014 0.836400 TCGGAGGGAGTGGCTTCTTT 60.836 55.000 0.00 0.00 0.00 2.52
1827 7015 0.902531 CGGAGGGAGTGGCTTCTTTA 59.097 55.000 0.00 0.00 0.00 1.85
1828 7016 1.405661 CGGAGGGAGTGGCTTCTTTAC 60.406 57.143 0.00 0.00 0.00 2.01
1837 7025 4.142038 AGTGGCTTCTTTACGAACCAAAT 58.858 39.130 0.00 0.00 35.80 2.32
1846 7034 7.359262 TCTTTACGAACCAAATGTACATGAG 57.641 36.000 9.63 4.99 0.00 2.90
1852 7040 6.128007 ACGAACCAAATGTACATGAGAATTCC 60.128 38.462 9.63 0.00 0.00 3.01
1860 7048 9.739276 AAATGTACATGAGAATTCCTCTGTTAA 57.261 29.630 9.63 0.00 42.44 2.01
1884 7072 2.093288 TGAAGACAGAGGATGATGTGGC 60.093 50.000 0.00 0.00 0.00 5.01
1897 7085 5.009010 GGATGATGTGGCTTCGTTATGAATT 59.991 40.000 0.00 0.00 35.63 2.17
1918 7110 2.728690 AACGGCCGTTTAAAATTCCC 57.271 45.000 36.96 0.00 34.22 3.97
1960 7390 3.259123 GGGATGGACTTGCACAAGATTTT 59.741 43.478 16.95 0.00 40.79 1.82
2014 7445 3.049912 GCTACGGCAAAAGGTGAAAAAG 58.950 45.455 0.00 0.00 38.54 2.27
2064 7498 5.182950 TCACTTCACTTTGTGTTGATGTTGT 59.817 36.000 0.00 0.00 34.79 3.32
2100 7534 4.026475 CCTCGAGATTATTTTGTGACTCGC 60.026 45.833 15.71 0.00 44.08 5.03
2110 7544 2.671130 TGTGACTCGCTATGCATTCA 57.329 45.000 3.54 0.00 0.00 2.57
2119 7553 7.031226 ACTCGCTATGCATTCACATTATTTT 57.969 32.000 3.54 0.00 0.00 1.82
2121 7555 6.794374 TCGCTATGCATTCACATTATTTTGT 58.206 32.000 3.54 0.00 0.00 2.83
2122 7556 7.257003 TCGCTATGCATTCACATTATTTTGTT 58.743 30.769 3.54 0.00 0.00 2.83
2123 7557 7.758980 TCGCTATGCATTCACATTATTTTGTTT 59.241 29.630 3.54 0.00 0.00 2.83
2178 7612 3.387699 TGTTCCGCCAGATCAAGATGATA 59.612 43.478 0.00 0.00 37.20 2.15
2185 7619 5.568392 GCCAGATCAAGATGATAGGGATTT 58.432 41.667 11.75 0.00 37.20 2.17
2197 7631 9.579932 AGATGATAGGGATTTAACTCCATTTTC 57.420 33.333 13.37 7.83 37.01 2.29
2198 7632 9.579932 GATGATAGGGATTTAACTCCATTTTCT 57.420 33.333 13.37 4.02 37.01 2.52
2199 7633 8.752005 TGATAGGGATTTAACTCCATTTTCTG 57.248 34.615 13.37 0.00 37.01 3.02
2200 7634 8.556589 TGATAGGGATTTAACTCCATTTTCTGA 58.443 33.333 13.37 0.00 37.01 3.27
2201 7635 8.753497 ATAGGGATTTAACTCCATTTTCTGAC 57.247 34.615 13.37 0.00 37.01 3.51
2202 7636 5.648092 AGGGATTTAACTCCATTTTCTGACG 59.352 40.000 13.37 0.00 37.01 4.35
2203 7637 5.646360 GGGATTTAACTCCATTTTCTGACGA 59.354 40.000 13.37 0.00 37.01 4.20
2204 7638 6.403309 GGGATTTAACTCCATTTTCTGACGAC 60.403 42.308 13.37 0.00 37.01 4.34
2205 7639 5.934935 TTTAACTCCATTTTCTGACGACC 57.065 39.130 0.00 0.00 0.00 4.79
2206 7640 3.485463 AACTCCATTTTCTGACGACCA 57.515 42.857 0.00 0.00 0.00 4.02
2207 7641 3.485463 ACTCCATTTTCTGACGACCAA 57.515 42.857 0.00 0.00 0.00 3.67
2208 7642 4.021102 ACTCCATTTTCTGACGACCAAT 57.979 40.909 0.00 0.00 0.00 3.16
2209 7643 4.398319 ACTCCATTTTCTGACGACCAATT 58.602 39.130 0.00 0.00 0.00 2.32
2210 7644 4.455877 ACTCCATTTTCTGACGACCAATTC 59.544 41.667 0.00 0.00 0.00 2.17
2211 7645 4.393834 TCCATTTTCTGACGACCAATTCA 58.606 39.130 0.00 0.00 0.00 2.57
2212 7646 4.215399 TCCATTTTCTGACGACCAATTCAC 59.785 41.667 0.00 0.00 0.00 3.18
2213 7647 3.870723 TTTTCTGACGACCAATTCACG 57.129 42.857 0.00 0.00 0.00 4.35
2214 7648 2.519377 TTCTGACGACCAATTCACGT 57.481 45.000 0.00 0.00 42.84 4.49
2215 7649 1.778334 TCTGACGACCAATTCACGTG 58.222 50.000 9.94 9.94 40.29 4.49
2216 7650 0.163788 CTGACGACCAATTCACGTGC 59.836 55.000 11.67 0.00 40.29 5.34
2217 7651 0.249699 TGACGACCAATTCACGTGCT 60.250 50.000 11.67 0.00 40.29 4.40
2218 7652 0.163788 GACGACCAATTCACGTGCTG 59.836 55.000 11.67 7.87 40.29 4.41
2219 7653 0.531974 ACGACCAATTCACGTGCTGT 60.532 50.000 11.67 2.78 38.79 4.40
2220 7654 0.586319 CGACCAATTCACGTGCTGTT 59.414 50.000 11.67 2.26 0.00 3.16
2221 7655 1.795872 CGACCAATTCACGTGCTGTTA 59.204 47.619 11.67 0.00 0.00 2.41
2222 7656 2.159841 CGACCAATTCACGTGCTGTTAG 60.160 50.000 11.67 1.22 0.00 2.34
2223 7657 2.806244 GACCAATTCACGTGCTGTTAGT 59.194 45.455 11.67 4.53 0.00 2.24
2224 7658 3.991773 GACCAATTCACGTGCTGTTAGTA 59.008 43.478 11.67 0.00 0.00 1.82
2225 7659 4.382291 ACCAATTCACGTGCTGTTAGTAA 58.618 39.130 11.67 0.00 0.00 2.24
2226 7660 4.817464 ACCAATTCACGTGCTGTTAGTAAA 59.183 37.500 11.67 0.00 0.00 2.01
2227 7661 5.144359 CCAATTCACGTGCTGTTAGTAAAC 58.856 41.667 11.67 0.00 36.07 2.01
2228 7662 4.640805 ATTCACGTGCTGTTAGTAAACG 57.359 40.909 11.67 3.83 38.53 3.60
2229 7663 1.788308 TCACGTGCTGTTAGTAAACGC 59.212 47.619 11.67 2.12 38.53 4.84
2230 7664 1.523515 CACGTGCTGTTAGTAAACGCA 59.476 47.619 0.82 4.46 40.36 5.24
2231 7665 2.156891 CACGTGCTGTTAGTAAACGCAT 59.843 45.455 0.82 0.00 42.58 4.73
2232 7666 2.156891 ACGTGCTGTTAGTAAACGCATG 59.843 45.455 18.30 18.30 46.14 4.06
2233 7667 2.473868 CGTGCTGTTAGTAAACGCATGG 60.474 50.000 14.58 6.63 42.58 3.66
2234 7668 2.739913 GTGCTGTTAGTAAACGCATGGA 59.260 45.455 9.70 0.00 42.58 3.41
2235 7669 3.000041 TGCTGTTAGTAAACGCATGGAG 59.000 45.455 0.00 0.00 38.92 3.86
2236 7670 2.223044 GCTGTTAGTAAACGCATGGAGC 60.223 50.000 0.00 0.00 38.53 4.70
2237 7671 3.000041 CTGTTAGTAAACGCATGGAGCA 59.000 45.455 0.00 0.00 46.13 4.26
2238 7672 3.000041 TGTTAGTAAACGCATGGAGCAG 59.000 45.455 0.00 0.00 46.13 4.24
2239 7673 3.259064 GTTAGTAAACGCATGGAGCAGA 58.741 45.455 0.00 0.00 46.13 4.26
2240 7674 2.472695 AGTAAACGCATGGAGCAGAA 57.527 45.000 0.00 0.00 46.13 3.02
2241 7675 2.778299 AGTAAACGCATGGAGCAGAAA 58.222 42.857 0.00 0.00 46.13 2.52
2242 7676 2.484264 AGTAAACGCATGGAGCAGAAAC 59.516 45.455 0.00 0.00 46.13 2.78
2243 7677 1.317613 AAACGCATGGAGCAGAAACA 58.682 45.000 0.00 0.00 46.13 2.83
2244 7678 1.317613 AACGCATGGAGCAGAAACAA 58.682 45.000 0.00 0.00 46.13 2.83
2245 7679 1.317613 ACGCATGGAGCAGAAACAAA 58.682 45.000 0.00 0.00 46.13 2.83
2246 7680 1.680735 ACGCATGGAGCAGAAACAAAA 59.319 42.857 0.00 0.00 46.13 2.44
2247 7681 2.287788 ACGCATGGAGCAGAAACAAAAG 60.288 45.455 0.00 0.00 46.13 2.27
2248 7682 2.287788 CGCATGGAGCAGAAACAAAAGT 60.288 45.455 0.00 0.00 46.13 2.66
2249 7683 3.721035 GCATGGAGCAGAAACAAAAGTT 58.279 40.909 0.00 0.00 44.79 2.66
2250 7684 4.556501 CGCATGGAGCAGAAACAAAAGTTA 60.557 41.667 0.00 0.00 46.13 2.24
2251 7685 5.473039 GCATGGAGCAGAAACAAAAGTTAT 58.527 37.500 0.00 0.00 44.79 1.89
2252 7686 5.346822 GCATGGAGCAGAAACAAAAGTTATG 59.653 40.000 0.00 0.00 44.79 1.90
2253 7687 6.449698 CATGGAGCAGAAACAAAAGTTATGT 58.550 36.000 0.00 0.00 0.00 2.29
2254 7688 6.463995 TGGAGCAGAAACAAAAGTTATGTT 57.536 33.333 0.00 0.00 42.56 2.71
2265 7699 9.495572 AAACAAAAGTTATGTTTTCACCAGAAA 57.504 25.926 0.00 0.00 45.97 2.52
2266 7700 9.665719 AACAAAAGTTATGTTTTCACCAGAAAT 57.334 25.926 0.00 0.00 42.90 2.17
2267 7701 9.313118 ACAAAAGTTATGTTTTCACCAGAAATC 57.687 29.630 0.00 0.00 42.90 2.17
2268 7702 9.311916 CAAAAGTTATGTTTTCACCAGAAATCA 57.688 29.630 4.72 4.72 43.64 2.57
2275 7709 8.599624 ATGTTTTCACCAGAAATCATATTCCT 57.400 30.769 10.95 0.00 45.45 3.36
2276 7710 9.699410 ATGTTTTCACCAGAAATCATATTCCTA 57.301 29.630 10.95 0.00 45.45 2.94
2277 7711 9.699410 TGTTTTCACCAGAAATCATATTCCTAT 57.301 29.630 0.00 0.00 42.90 2.57
2282 7716 9.566331 TCACCAGAAATCATATTCCTATATCCT 57.434 33.333 0.00 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.227490 TCACACACGTTTATTTTTACAAATGAG 57.773 29.630 0.00 0.00 34.29 2.90
39 40 7.332182 ACAACCAAAAATTTCACACACGTTTAT 59.668 29.630 0.00 0.00 0.00 1.40
40 41 6.645415 ACAACCAAAAATTTCACACACGTTTA 59.355 30.769 0.00 0.00 0.00 2.01
41 42 5.467063 ACAACCAAAAATTTCACACACGTTT 59.533 32.000 0.00 0.00 0.00 3.60
43 44 4.561105 ACAACCAAAAATTTCACACACGT 58.439 34.783 0.00 0.00 0.00 4.49
44 45 6.074569 GGATACAACCAAAAATTTCACACACG 60.075 38.462 0.00 0.00 0.00 4.49
45 46 6.074569 CGGATACAACCAAAAATTTCACACAC 60.075 38.462 0.00 0.00 0.00 3.82
47 48 6.210078 TCGGATACAACCAAAAATTTCACAC 58.790 36.000 0.00 0.00 0.00 3.82
59 60 2.468915 TGGGTACATCGGATACAACCA 58.531 47.619 14.09 9.70 0.00 3.67
63 64 2.224185 GCACATGGGTACATCGGATACA 60.224 50.000 0.00 0.00 34.35 2.29
70 71 1.094785 GGTGTGCACATGGGTACATC 58.905 55.000 24.69 18.10 35.84 3.06
72 73 0.250684 CTGGTGTGCACATGGGTACA 60.251 55.000 24.69 15.47 0.00 2.90
81 82 1.802960 CAACATCTCTCTGGTGTGCAC 59.197 52.381 10.75 10.75 0.00 4.57
83 84 2.462456 TCAACATCTCTCTGGTGTGC 57.538 50.000 0.00 0.00 35.30 4.57
88 89 6.041511 CACTCAGTTATCAACATCTCTCTGG 58.958 44.000 0.00 0.00 0.00 3.86
107 108 3.942115 CCATCTACGTCTTCTCTCACTCA 59.058 47.826 0.00 0.00 0.00 3.41
115 116 5.441500 TCATCTTCTCCATCTACGTCTTCT 58.558 41.667 0.00 0.00 0.00 2.85
121 122 3.733224 CGCTTTCATCTTCTCCATCTACG 59.267 47.826 0.00 0.00 0.00 3.51
140 141 1.134280 AGCTCCATATGCTTTGACGCT 60.134 47.619 0.00 0.00 37.52 5.07
172 173 2.425143 TCTCAATGCTTCCATCACCC 57.575 50.000 0.00 0.00 0.00 4.61
173 174 3.949754 TCAATCTCAATGCTTCCATCACC 59.050 43.478 0.00 0.00 0.00 4.02
175 176 5.106876 TCTCAATCTCAATGCTTCCATCA 57.893 39.130 0.00 0.00 0.00 3.07
183 184 3.242673 CGCCTTCTTCTCAATCTCAATGC 60.243 47.826 0.00 0.00 0.00 3.56
197 198 0.250513 GTGACCCTCATCGCCTTCTT 59.749 55.000 0.00 0.00 0.00 2.52
200 201 1.949847 CTCGTGACCCTCATCGCCTT 61.950 60.000 0.00 0.00 0.00 4.35
201 202 2.362503 TCGTGACCCTCATCGCCT 60.363 61.111 0.00 0.00 0.00 5.52
203 204 0.103208 AATCTCGTGACCCTCATCGC 59.897 55.000 0.00 0.00 0.00 4.58
205 206 2.482142 GGTGAATCTCGTGACCCTCATC 60.482 54.545 0.00 0.00 0.00 2.92
206 207 1.482593 GGTGAATCTCGTGACCCTCAT 59.517 52.381 0.00 0.00 0.00 2.90
207 208 0.895530 GGTGAATCTCGTGACCCTCA 59.104 55.000 0.00 0.00 0.00 3.86
216 217 5.038033 GCTACTAGTTCTTGGTGAATCTCG 58.962 45.833 0.00 0.00 36.99 4.04
218 219 4.142138 CGGCTACTAGTTCTTGGTGAATCT 60.142 45.833 0.00 0.00 36.99 2.40
227 228 3.946558 ACGATTCTCGGCTACTAGTTCTT 59.053 43.478 0.00 0.00 45.59 2.52
236 237 0.459585 GCCAACACGATTCTCGGCTA 60.460 55.000 1.29 0.00 45.59 3.93
248 249 1.001181 TGAGTTACTACCGGCCAACAC 59.999 52.381 0.00 0.00 0.00 3.32
256 257 5.453567 TCATCATCCATGAGTTACTACCG 57.546 43.478 0.00 0.00 40.64 4.02
258 259 5.641209 GGCATCATCATCCATGAGTTACTAC 59.359 44.000 0.00 0.00 45.11 2.73
261 262 4.392047 TGGCATCATCATCCATGAGTTAC 58.608 43.478 0.00 0.00 45.11 2.50
265 266 3.751518 TCTTGGCATCATCATCCATGAG 58.248 45.455 0.00 0.00 45.11 2.90
292 293 1.210931 CTTTGCGCATGGTGGTGAG 59.789 57.895 12.75 0.00 0.00 3.51
294 295 1.081242 GTCTTTGCGCATGGTGGTG 60.081 57.895 12.75 0.00 0.00 4.17
295 296 1.228245 AGTCTTTGCGCATGGTGGT 60.228 52.632 12.75 0.00 0.00 4.16
296 297 1.236616 TGAGTCTTTGCGCATGGTGG 61.237 55.000 12.75 0.00 0.00 4.61
297 298 0.592637 TTGAGTCTTTGCGCATGGTG 59.407 50.000 12.75 1.62 0.00 4.17
298 299 1.267806 CTTTGAGTCTTTGCGCATGGT 59.732 47.619 12.75 0.00 0.00 3.55
299 300 1.267806 ACTTTGAGTCTTTGCGCATGG 59.732 47.619 12.75 7.43 0.00 3.66
300 301 2.313234 CACTTTGAGTCTTTGCGCATG 58.687 47.619 12.75 7.88 0.00 4.06
301 302 1.335324 GCACTTTGAGTCTTTGCGCAT 60.335 47.619 12.75 0.00 0.00 4.73
302 303 0.029300 GCACTTTGAGTCTTTGCGCA 59.971 50.000 5.66 5.66 0.00 6.09
303 304 0.029300 TGCACTTTGAGTCTTTGCGC 59.971 50.000 0.00 0.00 35.90 6.09
304 305 1.063912 TGTGCACTTTGAGTCTTTGCG 59.936 47.619 19.41 0.00 35.90 4.85
305 306 2.542411 CCTGTGCACTTTGAGTCTTTGC 60.542 50.000 19.41 0.00 0.00 3.68
306 307 2.945008 TCCTGTGCACTTTGAGTCTTTG 59.055 45.455 19.41 0.00 0.00 2.77
307 308 3.281727 TCCTGTGCACTTTGAGTCTTT 57.718 42.857 19.41 0.00 0.00 2.52
308 309 3.281727 TTCCTGTGCACTTTGAGTCTT 57.718 42.857 19.41 0.00 0.00 3.01
309 310 2.945668 GTTTCCTGTGCACTTTGAGTCT 59.054 45.455 19.41 0.00 0.00 3.24
310 311 2.682856 TGTTTCCTGTGCACTTTGAGTC 59.317 45.455 19.41 8.75 0.00 3.36
311 312 2.722094 TGTTTCCTGTGCACTTTGAGT 58.278 42.857 19.41 0.00 0.00 3.41
312 313 3.781079 TTGTTTCCTGTGCACTTTGAG 57.219 42.857 19.41 6.67 0.00 3.02
313 314 4.402155 AGATTTGTTTCCTGTGCACTTTGA 59.598 37.500 19.41 8.84 0.00 2.69
314 315 4.685924 AGATTTGTTTCCTGTGCACTTTG 58.314 39.130 19.41 8.16 0.00 2.77
315 316 5.343307 AAGATTTGTTTCCTGTGCACTTT 57.657 34.783 19.41 0.00 0.00 2.66
316 317 5.105392 TCAAAGATTTGTTTCCTGTGCACTT 60.105 36.000 19.41 0.00 39.18 3.16
317 318 4.402155 TCAAAGATTTGTTTCCTGTGCACT 59.598 37.500 19.41 0.00 39.18 4.40
318 319 4.681744 TCAAAGATTTGTTTCCTGTGCAC 58.318 39.130 10.75 10.75 39.18 4.57
319 320 4.998671 TCAAAGATTTGTTTCCTGTGCA 57.001 36.364 5.29 0.00 39.18 4.57
320 321 5.984926 TGAATCAAAGATTTGTTTCCTGTGC 59.015 36.000 19.13 3.17 42.18 4.57
321 322 8.597662 AATGAATCAAAGATTTGTTTCCTGTG 57.402 30.769 19.13 0.00 42.18 3.66
329 330 9.807649 GGCATAGTAAATGAATCAAAGATTTGT 57.192 29.630 5.29 0.00 39.18 2.83
332 333 9.412460 TCAGGCATAGTAAATGAATCAAAGATT 57.588 29.630 0.00 0.00 0.00 2.40
374 376 8.799367 CCTAGCAATTCAAATATGATCCATGAA 58.201 33.333 0.00 0.00 34.96 2.57
377 379 8.582437 CAACCTAGCAATTCAAATATGATCCAT 58.418 33.333 0.00 0.00 34.96 3.41
388 390 4.935352 AGCAAACAACCTAGCAATTCAA 57.065 36.364 0.00 0.00 0.00 2.69
432 435 8.786937 ATCATTCGACAATAAATATTGCACAC 57.213 30.769 12.01 2.97 45.24 3.82
450 453 4.602006 ACTCATGTGACGTAGATCATTCG 58.398 43.478 0.94 0.00 0.00 3.34
470 473 4.837860 TCCCAACTCCAAATTTATGCAACT 59.162 37.500 0.00 0.00 0.00 3.16
488 491 5.255397 AGAACAGTATCCACATTTCCCAA 57.745 39.130 0.00 0.00 0.00 4.12
498 501 3.657398 TCGTCCCTAGAACAGTATCCA 57.343 47.619 0.00 0.00 0.00 3.41
509 513 4.772624 TGAATCCCATCTATTCGTCCCTAG 59.227 45.833 0.00 0.00 36.35 3.02
510 514 4.747583 TGAATCCCATCTATTCGTCCCTA 58.252 43.478 0.00 0.00 36.35 3.53
529 533 1.265635 CTGCGAACAACGGGAATTGAA 59.734 47.619 0.00 0.00 42.83 2.69
535 539 0.948623 CATGTCTGCGAACAACGGGA 60.949 55.000 0.00 0.00 42.83 5.14
538 542 4.422506 GCATGTCTGCGAACAACG 57.577 55.556 0.00 0.00 45.66 4.10
566 570 2.046314 ACCCTCATTTGTCCGCGG 60.046 61.111 22.12 22.12 0.00 6.46
567 571 0.953471 TTGACCCTCATTTGTCCGCG 60.953 55.000 0.00 0.00 0.00 6.46
585 589 9.197306 ACTTCTTCAAGGGTAAGTGTTAAATTT 57.803 29.630 0.00 0.00 33.37 1.82
599 603 8.848474 TGTTATTCTCTAAACTTCTTCAAGGG 57.152 34.615 0.00 0.00 33.37 3.95
601 605 8.993121 TGCTGTTATTCTCTAAACTTCTTCAAG 58.007 33.333 0.00 0.00 35.50 3.02
616 620 9.598517 CTCTCTCTTATTTTCTGCTGTTATTCT 57.401 33.333 0.00 0.00 0.00 2.40
617 621 9.593134 TCTCTCTCTTATTTTCTGCTGTTATTC 57.407 33.333 0.00 0.00 0.00 1.75
620 624 8.807118 TCTTCTCTCTCTTATTTTCTGCTGTTA 58.193 33.333 0.00 0.00 0.00 2.41
621 625 7.675062 TCTTCTCTCTCTTATTTTCTGCTGTT 58.325 34.615 0.00 0.00 0.00 3.16
622 626 7.238486 TCTTCTCTCTCTTATTTTCTGCTGT 57.762 36.000 0.00 0.00 0.00 4.40
625 629 8.034804 AGACTTCTTCTCTCTCTTATTTTCTGC 58.965 37.037 0.00 0.00 0.00 4.26
632 636 9.614792 GTTCTCTAGACTTCTTCTCTCTCTTAT 57.385 37.037 0.00 0.00 35.55 1.73
633 637 8.598916 TGTTCTCTAGACTTCTTCTCTCTCTTA 58.401 37.037 0.00 0.00 35.55 2.10
634 638 7.458397 TGTTCTCTAGACTTCTTCTCTCTCTT 58.542 38.462 0.00 0.00 35.55 2.85
635 639 7.016153 TGTTCTCTAGACTTCTTCTCTCTCT 57.984 40.000 0.00 0.00 35.55 3.10
636 640 7.103641 TCTGTTCTCTAGACTTCTTCTCTCTC 58.896 42.308 0.00 0.00 35.55 3.20
638 642 6.183360 GCTCTGTTCTCTAGACTTCTTCTCTC 60.183 46.154 0.00 0.00 35.55 3.20
639 643 5.648092 GCTCTGTTCTCTAGACTTCTTCTCT 59.352 44.000 0.00 0.00 35.55 3.10
640 644 5.648092 AGCTCTGTTCTCTAGACTTCTTCTC 59.352 44.000 0.00 0.00 35.55 2.87
641 645 5.570320 AGCTCTGTTCTCTAGACTTCTTCT 58.430 41.667 0.00 0.00 38.51 2.85
683 1032 3.734463 TGAGTAGATTTTGTGGTGCGAA 58.266 40.909 0.00 0.00 0.00 4.70
699 1051 4.534500 TGAAATAGAGGCTGGGTTTGAGTA 59.466 41.667 0.00 0.00 0.00 2.59
724 1076 8.617290 AATTAGCTTCCTTTCGAGTAGAAAAA 57.383 30.769 0.00 0.00 46.98 1.94
733 1085 8.519799 AATTATCCAAATTAGCTTCCTTTCGA 57.480 30.769 0.00 0.00 0.00 3.71
757 1114 9.620259 ACAAGTTTATCCTTTTTATGCCAAAAA 57.380 25.926 6.06 6.06 0.00 1.94
758 1115 9.050601 CACAAGTTTATCCTTTTTATGCCAAAA 57.949 29.630 0.00 0.00 0.00 2.44
759 1116 7.659390 CCACAAGTTTATCCTTTTTATGCCAAA 59.341 33.333 0.00 0.00 0.00 3.28
761 1118 6.295575 CCCACAAGTTTATCCTTTTTATGCCA 60.296 38.462 0.00 0.00 0.00 4.92
762 1119 6.071051 TCCCACAAGTTTATCCTTTTTATGCC 60.071 38.462 0.00 0.00 0.00 4.40
764 1121 8.585018 AGTTCCCACAAGTTTATCCTTTTTATG 58.415 33.333 0.00 0.00 0.00 1.90
765 1122 8.585018 CAGTTCCCACAAGTTTATCCTTTTTAT 58.415 33.333 0.00 0.00 0.00 1.40
766 1123 7.014808 CCAGTTCCCACAAGTTTATCCTTTTTA 59.985 37.037 0.00 0.00 0.00 1.52
772 1129 2.492088 GCCAGTTCCCACAAGTTTATCC 59.508 50.000 0.00 0.00 0.00 2.59
774 1131 3.074538 AGAGCCAGTTCCCACAAGTTTAT 59.925 43.478 0.00 0.00 0.00 1.40
775 1132 2.441750 AGAGCCAGTTCCCACAAGTTTA 59.558 45.455 0.00 0.00 0.00 2.01
779 1136 2.636830 CATAGAGCCAGTTCCCACAAG 58.363 52.381 0.00 0.00 0.00 3.16
783 1140 0.621571 AGCCATAGAGCCAGTTCCCA 60.622 55.000 0.00 0.00 0.00 4.37
927 3179 0.175531 GTGGTGCTGCTTTTGGTGTT 59.824 50.000 0.00 0.00 0.00 3.32
975 3283 1.227527 TGTGTGTGGAGGCGAGTTG 60.228 57.895 0.00 0.00 0.00 3.16
1106 3421 1.067565 ACATGAAGATGTCGCTGTCGT 60.068 47.619 0.00 0.00 38.53 4.34
1161 3476 4.114997 TGCATCTGCTCGTCGCGA 62.115 61.111 3.71 3.71 43.27 5.87
1306 6357 3.019799 TGAAGCTCTACTCTACTGGGG 57.980 52.381 0.00 0.00 0.00 4.96
1407 6485 6.030228 GCAAATGAACTTTGATAGGTGCTAC 58.970 40.000 2.05 0.00 45.96 3.58
1408 6486 5.945784 AGCAAATGAACTTTGATAGGTGCTA 59.054 36.000 2.05 0.00 45.96 3.49
1409 6487 4.768968 AGCAAATGAACTTTGATAGGTGCT 59.231 37.500 2.05 0.00 45.96 4.40
1410 6488 4.860907 CAGCAAATGAACTTTGATAGGTGC 59.139 41.667 2.05 0.00 45.96 5.01
1411 6489 6.258230 TCAGCAAATGAACTTTGATAGGTG 57.742 37.500 2.05 0.00 45.96 4.00
1412 6490 5.416952 CCTCAGCAAATGAACTTTGATAGGT 59.583 40.000 2.05 0.00 45.96 3.08
1413 6491 5.678107 GCCTCAGCAAATGAACTTTGATAGG 60.678 44.000 2.05 5.75 45.96 2.57
1467 6555 0.988063 AAGGAAGCCAGGAGAAGGAC 59.012 55.000 0.00 0.00 0.00 3.85
1482 6580 1.102154 CACACACACAGGCAAAAGGA 58.898 50.000 0.00 0.00 0.00 3.36
1484 6582 1.202114 ACACACACACACAGGCAAAAG 59.798 47.619 0.00 0.00 0.00 2.27
1500 6598 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1501 6599 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1502 6600 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1503 6601 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1504 6602 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1505 6603 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1506 6604 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1507 6605 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1508 6606 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1509 6607 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1510 6608 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1511 6609 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1512 6610 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1513 6611 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1514 6612 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1515 6613 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1516 6614 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1517 6615 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1518 6616 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1519 6617 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1520 6618 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1521 6619 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1522 6620 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1523 6621 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1524 6622 1.598882 AACACACACACACACACACA 58.401 45.000 0.00 0.00 0.00 3.72
1525 6623 2.287308 ACAAACACACACACACACACAC 60.287 45.455 0.00 0.00 0.00 3.82
1526 6624 1.950216 ACAAACACACACACACACACA 59.050 42.857 0.00 0.00 0.00 3.72
1527 6625 2.697431 ACAAACACACACACACACAC 57.303 45.000 0.00 0.00 0.00 3.82
1528 6626 3.181486 ACAAACAAACACACACACACACA 60.181 39.130 0.00 0.00 0.00 3.72
1529 6627 3.376540 ACAAACAAACACACACACACAC 58.623 40.909 0.00 0.00 0.00 3.82
1530 6628 3.717400 ACAAACAAACACACACACACA 57.283 38.095 0.00 0.00 0.00 3.72
1531 6629 4.504461 TCAAACAAACAAACACACACACAC 59.496 37.500 0.00 0.00 0.00 3.82
1532 6630 4.682787 TCAAACAAACAAACACACACACA 58.317 34.783 0.00 0.00 0.00 3.72
1533 6631 4.149747 CCTCAAACAAACAAACACACACAC 59.850 41.667 0.00 0.00 0.00 3.82
1534 6632 4.302455 CCTCAAACAAACAAACACACACA 58.698 39.130 0.00 0.00 0.00 3.72
1535 6633 3.122780 GCCTCAAACAAACAAACACACAC 59.877 43.478 0.00 0.00 0.00 3.82
1536 6634 3.006323 AGCCTCAAACAAACAAACACACA 59.994 39.130 0.00 0.00 0.00 3.72
1537 6635 3.584834 AGCCTCAAACAAACAAACACAC 58.415 40.909 0.00 0.00 0.00 3.82
1576 6679 2.642139 ACATATGTTGCTGCACTTGC 57.358 45.000 0.00 0.00 42.50 4.01
1577 6680 5.745294 GGATTTACATATGTTGCTGCACTTG 59.255 40.000 14.77 0.00 0.00 3.16
1578 6681 5.418524 TGGATTTACATATGTTGCTGCACTT 59.581 36.000 14.77 0.00 0.00 3.16
1579 6682 4.949238 TGGATTTACATATGTTGCTGCACT 59.051 37.500 14.77 0.00 0.00 4.40
1625 6743 4.915158 ATTTGGGCCAAATTTTGTGTTG 57.085 36.364 33.47 0.00 40.60 3.33
1634 6752 6.384886 AGTCATGATCTTAATTTGGGCCAAAT 59.615 34.615 33.47 33.47 44.62 2.32
1638 6756 5.127682 ACAAGTCATGATCTTAATTTGGGCC 59.872 40.000 0.00 0.00 0.00 5.80
1644 6762 6.725364 ACCCAGACAAGTCATGATCTTAATT 58.275 36.000 0.00 0.00 0.00 1.40
1645 6763 6.319048 ACCCAGACAAGTCATGATCTTAAT 57.681 37.500 0.00 0.00 0.00 1.40
1646 6764 5.762179 ACCCAGACAAGTCATGATCTTAA 57.238 39.130 0.00 0.00 0.00 1.85
1647 6765 5.762179 AACCCAGACAAGTCATGATCTTA 57.238 39.130 0.00 0.00 0.00 2.10
1699 6821 5.237996 GGTTTAGGCATAGTTTTATCGGACC 59.762 44.000 0.00 0.00 0.00 4.46
1702 6824 8.441312 TTTAGGTTTAGGCATAGTTTTATCGG 57.559 34.615 0.00 0.00 0.00 4.18
1785 6969 5.805486 CGATCCGACGACAATTATTATGGAT 59.195 40.000 0.00 0.00 36.45 3.41
1786 6970 5.158494 CGATCCGACGACAATTATTATGGA 58.842 41.667 0.00 0.00 35.09 3.41
1787 6971 4.326278 CCGATCCGACGACAATTATTATGG 59.674 45.833 0.00 0.00 35.09 2.74
1803 6991 3.917760 GCCACTCCCTCCGATCCG 61.918 72.222 0.00 0.00 0.00 4.18
1809 6997 1.405661 CGTAAAGAAGCCACTCCCTCC 60.406 57.143 0.00 0.00 0.00 4.30
1824 7012 7.731882 TTCTCATGTACATTTGGTTCGTAAA 57.268 32.000 5.37 0.00 0.00 2.01
1826 7014 7.065324 GGAATTCTCATGTACATTTGGTTCGTA 59.935 37.037 5.37 0.00 0.00 3.43
1827 7015 6.128007 GGAATTCTCATGTACATTTGGTTCGT 60.128 38.462 5.37 0.00 0.00 3.85
1828 7016 6.094048 AGGAATTCTCATGTACATTTGGTTCG 59.906 38.462 5.37 0.00 0.00 3.95
1837 7025 8.762645 AGATTAACAGAGGAATTCTCATGTACA 58.237 33.333 5.23 0.00 44.81 2.90
1846 7034 8.037758 TCTGTCTTCAGATTAACAGAGGAATTC 58.962 37.037 0.00 0.00 44.58 2.17
1877 7065 7.665080 GTTTAATTCATAACGAAGCCACATC 57.335 36.000 0.00 0.00 36.95 3.06
1897 7085 3.056962 GGGGAATTTTAAACGGCCGTTTA 60.057 43.478 44.18 44.18 45.26 2.01
2014 7445 6.378582 TGCTTAACGAATCTTTTTCATGTCC 58.621 36.000 0.00 0.00 0.00 4.02
2070 7504 8.450964 GTCACAAAATAATCTCGAGGAAAATCA 58.549 33.333 13.56 0.00 0.00 2.57
2080 7514 6.576021 CATAGCGAGTCACAAAATAATCTCG 58.424 40.000 7.81 7.81 44.60 4.04
2090 7524 2.672874 GTGAATGCATAGCGAGTCACAA 59.327 45.455 17.88 0.00 36.02 3.33
2145 7579 0.879090 GGCGGAACAAGGAAAATCGT 59.121 50.000 0.00 0.00 0.00 3.73
2152 7586 0.690192 TTGATCTGGCGGAACAAGGA 59.310 50.000 14.25 0.00 32.92 3.36
2178 7612 5.648092 CGTCAGAAAATGGAGTTAAATCCCT 59.352 40.000 18.81 6.71 38.72 4.20
2185 7619 4.610605 TGGTCGTCAGAAAATGGAGTTA 57.389 40.909 0.00 0.00 0.00 2.24
2197 7631 0.163788 GCACGTGAATTGGTCGTCAG 59.836 55.000 22.23 0.00 35.62 3.51
2198 7632 0.249699 AGCACGTGAATTGGTCGTCA 60.250 50.000 22.23 0.00 35.62 4.35
2199 7633 0.163788 CAGCACGTGAATTGGTCGTC 59.836 55.000 22.23 0.00 35.62 4.20
2200 7634 0.531974 ACAGCACGTGAATTGGTCGT 60.532 50.000 22.23 0.25 38.34 4.34
2201 7635 0.586319 AACAGCACGTGAATTGGTCG 59.414 50.000 22.23 0.00 0.00 4.79
2202 7636 2.806244 ACTAACAGCACGTGAATTGGTC 59.194 45.455 22.23 0.00 0.00 4.02
2203 7637 2.846193 ACTAACAGCACGTGAATTGGT 58.154 42.857 22.23 14.82 0.00 3.67
2204 7638 5.144359 GTTTACTAACAGCACGTGAATTGG 58.856 41.667 22.23 13.50 34.31 3.16
2205 7639 4.838642 CGTTTACTAACAGCACGTGAATTG 59.161 41.667 22.23 15.92 33.75 2.32
2206 7640 4.609783 GCGTTTACTAACAGCACGTGAATT 60.610 41.667 22.23 11.95 35.41 2.17
2207 7641 3.120786 GCGTTTACTAACAGCACGTGAAT 60.121 43.478 22.23 3.35 35.41 2.57
2208 7642 2.219216 GCGTTTACTAACAGCACGTGAA 59.781 45.455 22.23 0.00 35.41 3.18
2209 7643 1.788308 GCGTTTACTAACAGCACGTGA 59.212 47.619 22.23 0.00 35.41 4.35
2210 7644 1.523515 TGCGTTTACTAACAGCACGTG 59.476 47.619 12.28 12.28 38.17 4.49
2211 7645 1.855513 TGCGTTTACTAACAGCACGT 58.144 45.000 0.00 0.00 38.17 4.49
2212 7646 2.473868 CCATGCGTTTACTAACAGCACG 60.474 50.000 8.75 0.00 42.23 5.34
2213 7647 2.739913 TCCATGCGTTTACTAACAGCAC 59.260 45.455 8.75 0.00 42.23 4.40
2214 7648 3.000041 CTCCATGCGTTTACTAACAGCA 59.000 45.455 0.00 0.00 42.95 4.41
2215 7649 2.223044 GCTCCATGCGTTTACTAACAGC 60.223 50.000 0.00 0.00 35.67 4.40
2216 7650 3.000041 TGCTCCATGCGTTTACTAACAG 59.000 45.455 0.00 0.00 46.63 3.16
2217 7651 3.000041 CTGCTCCATGCGTTTACTAACA 59.000 45.455 0.00 0.00 46.63 2.41
2218 7652 3.259064 TCTGCTCCATGCGTTTACTAAC 58.741 45.455 0.00 0.00 46.63 2.34
2219 7653 3.603158 TCTGCTCCATGCGTTTACTAA 57.397 42.857 0.00 0.00 46.63 2.24
2220 7654 3.603158 TTCTGCTCCATGCGTTTACTA 57.397 42.857 0.00 0.00 46.63 1.82
2221 7655 2.472695 TTCTGCTCCATGCGTTTACT 57.527 45.000 0.00 0.00 46.63 2.24
2222 7656 2.225491 TGTTTCTGCTCCATGCGTTTAC 59.775 45.455 0.00 0.00 46.63 2.01
2223 7657 2.499197 TGTTTCTGCTCCATGCGTTTA 58.501 42.857 0.00 0.00 46.63 2.01
2224 7658 1.317613 TGTTTCTGCTCCATGCGTTT 58.682 45.000 0.00 0.00 46.63 3.60
2225 7659 1.317613 TTGTTTCTGCTCCATGCGTT 58.682 45.000 0.00 0.00 46.63 4.84
2226 7660 1.317613 TTTGTTTCTGCTCCATGCGT 58.682 45.000 0.00 0.00 46.63 5.24
2227 7661 2.287788 ACTTTTGTTTCTGCTCCATGCG 60.288 45.455 0.00 0.00 46.63 4.73
2228 7662 3.375782 ACTTTTGTTTCTGCTCCATGC 57.624 42.857 0.00 0.00 43.25 4.06
2229 7663 6.449698 ACATAACTTTTGTTTCTGCTCCATG 58.550 36.000 0.00 0.00 43.32 3.66
2230 7664 6.655078 ACATAACTTTTGTTTCTGCTCCAT 57.345 33.333 0.00 0.00 43.32 3.41
2231 7665 6.463995 AACATAACTTTTGTTTCTGCTCCA 57.536 33.333 0.00 0.00 43.32 3.86
2232 7666 7.491048 TGAAAACATAACTTTTGTTTCTGCTCC 59.509 33.333 9.83 0.40 44.32 4.70
2233 7667 8.321005 GTGAAAACATAACTTTTGTTTCTGCTC 58.679 33.333 9.83 5.88 44.32 4.26
2234 7668 7.277760 GGTGAAAACATAACTTTTGTTTCTGCT 59.722 33.333 9.83 0.00 44.32 4.24
2235 7669 7.064016 TGGTGAAAACATAACTTTTGTTTCTGC 59.936 33.333 9.83 5.25 44.32 4.26
2236 7670 8.472683 TGGTGAAAACATAACTTTTGTTTCTG 57.527 30.769 9.83 0.00 44.32 3.02
2237 7671 8.527810 TCTGGTGAAAACATAACTTTTGTTTCT 58.472 29.630 9.83 3.05 44.32 2.52
2238 7672 8.696410 TCTGGTGAAAACATAACTTTTGTTTC 57.304 30.769 9.83 5.92 44.32 2.78
2239 7673 9.495572 TTTCTGGTGAAAACATAACTTTTGTTT 57.504 25.926 4.93 4.93 46.38 2.83
2240 7674 9.665719 ATTTCTGGTGAAAACATAACTTTTGTT 57.334 25.926 0.00 0.00 44.22 2.83
2241 7675 9.313118 GATTTCTGGTGAAAACATAACTTTTGT 57.687 29.630 0.00 0.00 44.22 2.83
2242 7676 9.311916 TGATTTCTGGTGAAAACATAACTTTTG 57.688 29.630 0.00 0.00 44.22 2.44
2251 7685 9.699410 ATAGGAATATGATTTCTGGTGAAAACA 57.301 29.630 4.46 4.46 44.82 2.83
2256 7690 9.566331 AGGATATAGGAATATGATTTCTGGTGA 57.434 33.333 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.