Multiple sequence alignment - TraesCS2B01G476200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G476200 chr2B 100.000 2291 0 0 1 2291 673002719 673005009 0.000000e+00 4231.0
1 TraesCS2B01G476200 chr2B 86.371 631 67 13 681 1299 672797247 672796624 0.000000e+00 671.0
2 TraesCS2B01G476200 chr2B 90.688 494 34 7 888 1377 673092908 673093393 0.000000e+00 647.0
3 TraesCS2B01G476200 chr2B 81.320 803 91 35 640 1423 672646244 672647006 4.210000e-167 597.0
4 TraesCS2B01G476200 chr2B 78.991 852 101 37 596 1423 673050572 673051369 5.650000e-141 510.0
5 TraesCS2B01G476200 chr2B 83.547 547 57 14 749 1290 673170446 673170964 4.430000e-132 481.0
6 TraesCS2B01G476200 chr2B 86.957 161 18 3 337 495 449846041 449845882 6.500000e-41 178.0
7 TraesCS2B01G476200 chr2B 86.441 118 15 1 37 154 246438336 246438220 6.640000e-26 128.0
8 TraesCS2B01G476200 chr2B 82.317 164 12 7 596 742 672776470 672776307 2.390000e-25 126.0
9 TraesCS2B01G476200 chr4A 94.242 851 41 5 1441 2288 500578701 500579546 0.000000e+00 1293.0
10 TraesCS2B01G476200 chr5B 93.816 857 45 5 1438 2291 20654816 20655667 0.000000e+00 1282.0
11 TraesCS2B01G476200 chr6B 93.911 854 39 10 1442 2291 125477418 125478262 0.000000e+00 1277.0
12 TraesCS2B01G476200 chr6B 84.530 181 22 6 335 512 68111970 68111793 8.410000e-40 174.0
13 TraesCS2B01G476200 chr7B 93.443 854 46 7 1442 2291 53639843 53640690 0.000000e+00 1258.0
14 TraesCS2B01G476200 chr7B 94.231 52 3 0 266 317 260541341 260541290 1.890000e-11 80.5
15 TraesCS2B01G476200 chr7B 91.071 56 5 0 262 317 407903948 407903893 2.440000e-10 76.8
16 TraesCS2B01G476200 chr3B 93.007 858 44 8 1442 2291 535705559 535706408 0.000000e+00 1238.0
17 TraesCS2B01G476200 chr3B 86.585 82 9 2 36 115 3018916 3018835 3.130000e-14 89.8
18 TraesCS2B01G476200 chrUn 93.103 841 50 7 1441 2278 41912312 41913147 0.000000e+00 1225.0
19 TraesCS2B01G476200 chrUn 88.608 158 16 2 337 493 293303264 293303420 8.350000e-45 191.0
20 TraesCS2B01G476200 chrUn 88.608 158 16 2 337 493 293308661 293308817 8.350000e-45 191.0
21 TraesCS2B01G476200 chr5D 92.497 853 56 5 1442 2291 480982984 480982137 0.000000e+00 1214.0
22 TraesCS2B01G476200 chr5D 92.497 853 56 5 1442 2291 496196483 496197330 0.000000e+00 1214.0
23 TraesCS2B01G476200 chr5D 92.157 51 3 1 267 317 173095511 173095560 1.140000e-08 71.3
24 TraesCS2B01G476200 chr4D 92.299 857 58 5 1438 2291 34653013 34653864 0.000000e+00 1210.0
25 TraesCS2B01G476200 chr2D 83.833 600 63 21 837 1423 562807767 562808345 7.200000e-150 540.0
26 TraesCS2B01G476200 chr2D 84.934 531 55 17 834 1362 562839527 562840034 4.360000e-142 514.0
27 TraesCS2B01G476200 chr2D 81.520 671 81 28 763 1423 562753890 562754527 1.570000e-141 512.0
28 TraesCS2B01G476200 chr2D 83.028 601 62 18 764 1362 562684806 562685368 2.030000e-140 508.0
29 TraesCS2B01G476200 chr2D 85.744 484 48 9 887 1362 562785489 562785959 2.040000e-135 492.0
30 TraesCS2B01G476200 chr2D 83.181 547 56 17 750 1290 562850597 562851113 3.450000e-128 468.0
31 TraesCS2B01G476200 chr2D 88.952 353 31 2 949 1301 562735069 562735413 1.630000e-116 429.0
32 TraesCS2B01G476200 chr2D 97.222 36 1 0 1364 1399 562785996 562786031 6.830000e-06 62.1
33 TraesCS2B01G476200 chr2A 90.338 414 35 4 949 1362 703291191 703291599 2.590000e-149 538.0
34 TraesCS2B01G476200 chr2A 87.387 444 35 7 932 1362 703345924 703346359 7.350000e-135 490.0
35 TraesCS2B01G476200 chr2A 86.623 456 42 9 887 1336 703282308 703282750 9.510000e-134 486.0
36 TraesCS2B01G476200 chr2A 83.029 548 67 11 749 1290 703353568 703354095 7.410000e-130 473.0
37 TraesCS2B01G476200 chr2A 82.946 129 11 4 596 723 703282162 703282280 3.110000e-19 106.0
38 TraesCS2B01G476200 chr5A 88.608 158 16 2 337 493 47844205 47844361 8.350000e-45 191.0
39 TraesCS2B01G476200 chr3A 87.425 167 17 4 337 502 326760 326597 3.000000e-44 189.0
40 TraesCS2B01G476200 chr3A 86.875 160 19 2 335 493 682358826 682358984 6.500000e-41 178.0
41 TraesCS2B01G476200 chr3D 87.500 160 16 4 337 493 311870787 311870945 5.030000e-42 182.0
42 TraesCS2B01G476200 chr3D 86.957 161 18 3 335 493 474219129 474219288 6.500000e-41 178.0
43 TraesCS2B01G476200 chr3D 89.286 84 9 0 71 154 505067141 505067224 3.110000e-19 106.0
44 TraesCS2B01G476200 chr4B 84.211 114 16 2 36 149 227300754 227300643 2.410000e-20 110.0
45 TraesCS2B01G476200 chr1A 90.123 81 8 0 59 139 392046996 392046916 3.110000e-19 106.0
46 TraesCS2B01G476200 chr1A 90.566 53 4 1 262 314 501886308 501886359 4.080000e-08 69.4
47 TraesCS2B01G476200 chr1B 92.857 56 4 0 262 317 600955846 600955791 5.250000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G476200 chr2B 673002719 673005009 2290 False 4231.00 4231 100.0000 1 2291 1 chr2B.!!$F2 2290
1 TraesCS2B01G476200 chr2B 672796624 672797247 623 True 671.00 671 86.3710 681 1299 1 chr2B.!!$R4 618
2 TraesCS2B01G476200 chr2B 672646244 672647006 762 False 597.00 597 81.3200 640 1423 1 chr2B.!!$F1 783
3 TraesCS2B01G476200 chr2B 673050572 673051369 797 False 510.00 510 78.9910 596 1423 1 chr2B.!!$F3 827
4 TraesCS2B01G476200 chr2B 673170446 673170964 518 False 481.00 481 83.5470 749 1290 1 chr2B.!!$F5 541
5 TraesCS2B01G476200 chr4A 500578701 500579546 845 False 1293.00 1293 94.2420 1441 2288 1 chr4A.!!$F1 847
6 TraesCS2B01G476200 chr5B 20654816 20655667 851 False 1282.00 1282 93.8160 1438 2291 1 chr5B.!!$F1 853
7 TraesCS2B01G476200 chr6B 125477418 125478262 844 False 1277.00 1277 93.9110 1442 2291 1 chr6B.!!$F1 849
8 TraesCS2B01G476200 chr7B 53639843 53640690 847 False 1258.00 1258 93.4430 1442 2291 1 chr7B.!!$F1 849
9 TraesCS2B01G476200 chr3B 535705559 535706408 849 False 1238.00 1238 93.0070 1442 2291 1 chr3B.!!$F1 849
10 TraesCS2B01G476200 chrUn 41912312 41913147 835 False 1225.00 1225 93.1030 1441 2278 1 chrUn.!!$F1 837
11 TraesCS2B01G476200 chr5D 480982137 480982984 847 True 1214.00 1214 92.4970 1442 2291 1 chr5D.!!$R1 849
12 TraesCS2B01G476200 chr5D 496196483 496197330 847 False 1214.00 1214 92.4970 1442 2291 1 chr5D.!!$F2 849
13 TraesCS2B01G476200 chr4D 34653013 34653864 851 False 1210.00 1210 92.2990 1438 2291 1 chr4D.!!$F1 853
14 TraesCS2B01G476200 chr2D 562807767 562808345 578 False 540.00 540 83.8330 837 1423 1 chr2D.!!$F4 586
15 TraesCS2B01G476200 chr2D 562839527 562840034 507 False 514.00 514 84.9340 834 1362 1 chr2D.!!$F5 528
16 TraesCS2B01G476200 chr2D 562753890 562754527 637 False 512.00 512 81.5200 763 1423 1 chr2D.!!$F3 660
17 TraesCS2B01G476200 chr2D 562684806 562685368 562 False 508.00 508 83.0280 764 1362 1 chr2D.!!$F1 598
18 TraesCS2B01G476200 chr2D 562850597 562851113 516 False 468.00 468 83.1810 750 1290 1 chr2D.!!$F6 540
19 TraesCS2B01G476200 chr2D 562785489 562786031 542 False 277.05 492 91.4830 887 1399 2 chr2D.!!$F7 512
20 TraesCS2B01G476200 chr2A 703353568 703354095 527 False 473.00 473 83.0290 749 1290 1 chr2A.!!$F3 541
21 TraesCS2B01G476200 chr2A 703282162 703282750 588 False 296.00 486 84.7845 596 1336 2 chr2A.!!$F4 740

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
889 941 0.03601 CCACCCAACTCATTCGCTCT 60.036 55.0 0.0 0.0 0.0 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2250 2397 0.546267 TCCTTCTCTGCTGGCCTCTT 60.546 55.0 3.32 0.0 0.0 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.003480 CACTAAACCTTAGCACTCTGCC 58.997 50.000 0.00 0.00 46.52 4.85
22 23 2.907042 ACTAAACCTTAGCACTCTGCCT 59.093 45.455 0.00 0.00 46.52 4.75
23 24 4.081642 CACTAAACCTTAGCACTCTGCCTA 60.082 45.833 0.00 0.00 46.52 3.93
24 25 4.530946 ACTAAACCTTAGCACTCTGCCTAA 59.469 41.667 0.00 0.00 46.52 2.69
25 26 4.367039 AAACCTTAGCACTCTGCCTAAA 57.633 40.909 0.00 0.00 46.52 1.85
26 27 3.336138 ACCTTAGCACTCTGCCTAAAC 57.664 47.619 0.00 0.00 46.52 2.01
27 28 2.907042 ACCTTAGCACTCTGCCTAAACT 59.093 45.455 0.00 0.00 46.52 2.66
28 29 4.094476 ACCTTAGCACTCTGCCTAAACTA 58.906 43.478 0.00 0.00 46.52 2.24
29 30 4.717280 ACCTTAGCACTCTGCCTAAACTAT 59.283 41.667 0.00 0.00 46.52 2.12
30 31 5.897824 ACCTTAGCACTCTGCCTAAACTATA 59.102 40.000 0.00 0.00 46.52 1.31
31 32 6.183360 ACCTTAGCACTCTGCCTAAACTATAC 60.183 42.308 0.00 0.00 46.52 1.47
32 33 6.041069 CCTTAGCACTCTGCCTAAACTATACT 59.959 42.308 0.00 0.00 46.52 2.12
33 34 5.269505 AGCACTCTGCCTAAACTATACTG 57.730 43.478 0.00 0.00 46.52 2.74
34 35 4.956700 AGCACTCTGCCTAAACTATACTGA 59.043 41.667 0.00 0.00 46.52 3.41
35 36 5.600484 AGCACTCTGCCTAAACTATACTGAT 59.400 40.000 0.00 0.00 46.52 2.90
36 37 6.098982 AGCACTCTGCCTAAACTATACTGATT 59.901 38.462 0.00 0.00 46.52 2.57
37 38 6.763610 GCACTCTGCCTAAACTATACTGATTT 59.236 38.462 0.00 0.00 37.42 2.17
38 39 7.281100 GCACTCTGCCTAAACTATACTGATTTT 59.719 37.037 0.00 0.00 37.42 1.82
39 40 9.167311 CACTCTGCCTAAACTATACTGATTTTT 57.833 33.333 0.00 0.00 0.00 1.94
60 61 6.373186 TTTTTCTCGAAAAGAAGGAAGACC 57.627 37.500 5.15 0.00 44.69 3.85
61 62 5.681639 TTTTCTCGAAAAGAAGGAAGACCT 58.318 37.500 0.93 0.00 44.69 3.85
62 63 5.758784 TTTTCTCGAAAAGAAGGAAGACCTC 59.241 40.000 0.93 0.00 44.69 3.85
63 64 7.185364 TTTTCTCGAAAAGAAGGAAGACCTCC 61.185 42.308 0.93 0.00 44.69 4.30
70 71 2.364448 GGAAGACCTCCGGCCTCT 60.364 66.667 0.00 0.00 33.37 3.69
71 72 2.726351 GGAAGACCTCCGGCCTCTG 61.726 68.421 0.00 0.00 33.37 3.35
72 73 1.682684 GAAGACCTCCGGCCTCTGA 60.683 63.158 0.00 0.00 0.00 3.27
73 74 1.229209 AAGACCTCCGGCCTCTGAA 60.229 57.895 0.00 0.00 0.00 3.02
74 75 0.618968 AAGACCTCCGGCCTCTGAAT 60.619 55.000 0.00 0.00 0.00 2.57
75 76 1.045911 AGACCTCCGGCCTCTGAATC 61.046 60.000 0.00 0.00 0.00 2.52
76 77 1.002274 ACCTCCGGCCTCTGAATCT 59.998 57.895 0.00 0.00 0.00 2.40
77 78 1.333636 ACCTCCGGCCTCTGAATCTG 61.334 60.000 0.00 0.00 0.00 2.90
78 79 1.445095 CTCCGGCCTCTGAATCTGG 59.555 63.158 0.00 0.00 0.00 3.86
79 80 2.037620 CTCCGGCCTCTGAATCTGGG 62.038 65.000 0.00 0.00 0.00 4.45
80 81 2.370445 CCGGCCTCTGAATCTGGGT 61.370 63.158 0.00 0.00 0.00 4.51
81 82 1.153289 CGGCCTCTGAATCTGGGTG 60.153 63.158 0.00 0.00 0.00 4.61
82 83 1.617018 CGGCCTCTGAATCTGGGTGA 61.617 60.000 0.00 0.00 0.00 4.02
83 84 0.842635 GGCCTCTGAATCTGGGTGAT 59.157 55.000 0.00 0.00 36.89 3.06
84 85 1.476471 GGCCTCTGAATCTGGGTGATG 60.476 57.143 0.00 0.00 35.21 3.07
85 86 1.964552 CCTCTGAATCTGGGTGATGC 58.035 55.000 0.00 0.00 35.21 3.91
86 87 1.211212 CCTCTGAATCTGGGTGATGCA 59.789 52.381 0.00 0.00 38.37 3.96
87 88 2.158652 CCTCTGAATCTGGGTGATGCAT 60.159 50.000 0.00 0.00 39.84 3.96
88 89 2.879026 CTCTGAATCTGGGTGATGCATG 59.121 50.000 2.46 0.00 39.84 4.06
89 90 1.337071 CTGAATCTGGGTGATGCATGC 59.663 52.381 11.82 11.82 39.84 4.06
90 91 1.341187 TGAATCTGGGTGATGCATGCA 60.341 47.619 25.04 25.04 35.84 3.96
91 92 1.752498 GAATCTGGGTGATGCATGCAA 59.248 47.619 26.68 6.15 35.21 4.08
92 93 1.108776 ATCTGGGTGATGCATGCAAC 58.891 50.000 26.68 23.10 33.43 4.17
93 94 0.966875 TCTGGGTGATGCATGCAACC 60.967 55.000 26.83 26.83 43.53 3.77
94 95 3.697424 GGGTGATGCATGCAACCA 58.303 55.556 32.41 25.82 42.75 3.67
95 96 2.204748 GGGTGATGCATGCAACCAT 58.795 52.632 32.41 16.33 42.75 3.55
96 97 0.538118 GGGTGATGCATGCAACCATT 59.462 50.000 32.41 15.98 42.75 3.16
97 98 1.065998 GGGTGATGCATGCAACCATTT 60.066 47.619 32.41 15.28 42.75 2.32
98 99 2.616001 GGGTGATGCATGCAACCATTTT 60.616 45.455 32.41 14.59 42.75 1.82
99 100 3.369261 GGGTGATGCATGCAACCATTTTA 60.369 43.478 32.41 10.80 42.75 1.52
100 101 4.444536 GGTGATGCATGCAACCATTTTAT 58.555 39.130 28.84 10.19 0.00 1.40
101 102 4.508861 GGTGATGCATGCAACCATTTTATC 59.491 41.667 28.84 17.89 0.00 1.75
102 103 5.110598 GTGATGCATGCAACCATTTTATCA 58.889 37.500 26.68 17.09 0.00 2.15
103 104 5.581479 GTGATGCATGCAACCATTTTATCAA 59.419 36.000 26.68 0.00 30.67 2.57
104 105 6.259167 GTGATGCATGCAACCATTTTATCAAT 59.741 34.615 26.68 1.78 30.67 2.57
105 106 6.824196 TGATGCATGCAACCATTTTATCAATT 59.176 30.769 26.68 1.01 0.00 2.32
106 107 7.985752 TGATGCATGCAACCATTTTATCAATTA 59.014 29.630 26.68 0.00 0.00 1.40
107 108 8.911918 ATGCATGCAACCATTTTATCAATTAT 57.088 26.923 26.68 0.00 0.00 1.28
108 109 8.734218 TGCATGCAACCATTTTATCAATTATT 57.266 26.923 20.30 0.00 0.00 1.40
109 110 8.828644 TGCATGCAACCATTTTATCAATTATTC 58.171 29.630 20.30 0.00 0.00 1.75
110 111 8.828644 GCATGCAACCATTTTATCAATTATTCA 58.171 29.630 14.21 0.00 0.00 2.57
112 113 9.887629 ATGCAACCATTTTATCAATTATTCACA 57.112 25.926 0.00 0.00 0.00 3.58
113 114 9.716531 TGCAACCATTTTATCAATTATTCACAA 57.283 25.926 0.00 0.00 0.00 3.33
133 134 8.725405 TCACAAAGAACTTACAAAGTGATACA 57.275 30.769 0.00 0.00 41.91 2.29
134 135 9.337396 TCACAAAGAACTTACAAAGTGATACAT 57.663 29.630 0.00 0.00 41.91 2.29
135 136 9.599322 CACAAAGAACTTACAAAGTGATACATC 57.401 33.333 0.00 0.00 41.91 3.06
136 137 9.337396 ACAAAGAACTTACAAAGTGATACATCA 57.663 29.630 0.00 0.00 41.91 3.07
137 138 9.817365 CAAAGAACTTACAAAGTGATACATCAG 57.183 33.333 0.00 0.00 41.91 2.90
138 139 9.561069 AAAGAACTTACAAAGTGATACATCAGT 57.439 29.630 0.00 0.00 41.91 3.41
142 143 9.998106 AACTTACAAAGTGATACATCAGTAAGT 57.002 29.630 19.14 19.14 46.04 2.24
143 144 9.640963 ACTTACAAAGTGATACATCAGTAAGTC 57.359 33.333 19.14 0.38 43.69 3.01
144 145 9.862371 CTTACAAAGTGATACATCAGTAAGTCT 57.138 33.333 14.77 0.00 39.44 3.24
151 152 9.244292 AGTGATACATCAGTAAGTCTAAAGTCA 57.756 33.333 0.00 0.00 38.62 3.41
152 153 9.291664 GTGATACATCAGTAAGTCTAAAGTCAC 57.708 37.037 0.00 0.00 37.51 3.67
153 154 8.467598 TGATACATCAGTAAGTCTAAAGTCACC 58.532 37.037 0.00 0.00 33.13 4.02
154 155 5.710984 ACATCAGTAAGTCTAAAGTCACCG 58.289 41.667 0.00 0.00 0.00 4.94
155 156 5.243283 ACATCAGTAAGTCTAAAGTCACCGT 59.757 40.000 0.00 0.00 0.00 4.83
156 157 5.779529 TCAGTAAGTCTAAAGTCACCGTT 57.220 39.130 0.00 0.00 0.00 4.44
157 158 6.152932 TCAGTAAGTCTAAAGTCACCGTTT 57.847 37.500 0.00 0.00 0.00 3.60
158 159 6.576185 TCAGTAAGTCTAAAGTCACCGTTTT 58.424 36.000 0.00 0.00 0.00 2.43
159 160 6.477688 TCAGTAAGTCTAAAGTCACCGTTTTG 59.522 38.462 0.00 0.00 0.00 2.44
160 161 6.477688 CAGTAAGTCTAAAGTCACCGTTTTGA 59.522 38.462 0.00 0.00 0.00 2.69
161 162 7.170998 CAGTAAGTCTAAAGTCACCGTTTTGAT 59.829 37.037 0.00 0.00 0.00 2.57
162 163 5.924475 AGTCTAAAGTCACCGTTTTGATG 57.076 39.130 0.00 0.00 0.00 3.07
163 164 5.607477 AGTCTAAAGTCACCGTTTTGATGA 58.393 37.500 0.00 0.00 0.00 2.92
164 165 5.465724 AGTCTAAAGTCACCGTTTTGATGAC 59.534 40.000 0.00 0.00 41.95 3.06
165 166 5.235616 GTCTAAAGTCACCGTTTTGATGACA 59.764 40.000 6.40 0.00 44.32 3.58
166 167 5.995282 TCTAAAGTCACCGTTTTGATGACAT 59.005 36.000 6.40 0.00 44.32 3.06
167 168 4.488126 AAGTCACCGTTTTGATGACATG 57.512 40.909 6.40 0.00 44.32 3.21
168 169 2.226437 AGTCACCGTTTTGATGACATGC 59.774 45.455 6.40 0.00 44.32 4.06
169 170 1.196581 TCACCGTTTTGATGACATGCG 59.803 47.619 0.00 0.00 0.00 4.73
170 171 0.521291 ACCGTTTTGATGACATGCGG 59.479 50.000 0.00 0.00 39.16 5.69
171 172 0.521291 CCGTTTTGATGACATGCGGT 59.479 50.000 0.00 0.00 33.65 5.68
172 173 1.605500 CGTTTTGATGACATGCGGTG 58.394 50.000 0.00 0.00 0.00 4.94
173 174 1.339711 GTTTTGATGACATGCGGTGC 58.660 50.000 0.00 0.00 0.00 5.01
174 175 0.243365 TTTTGATGACATGCGGTGCC 59.757 50.000 0.00 0.00 0.00 5.01
175 176 1.594194 TTTGATGACATGCGGTGCCC 61.594 55.000 0.00 0.00 0.00 5.36
176 177 2.124570 GATGACATGCGGTGCCCT 60.125 61.111 0.00 0.00 0.00 5.19
177 178 1.750399 GATGACATGCGGTGCCCTT 60.750 57.895 0.00 0.00 0.00 3.95
178 179 0.463654 GATGACATGCGGTGCCCTTA 60.464 55.000 0.00 0.00 0.00 2.69
179 180 0.464373 ATGACATGCGGTGCCCTTAG 60.464 55.000 0.00 0.00 0.00 2.18
180 181 1.819632 GACATGCGGTGCCCTTAGG 60.820 63.158 0.00 0.00 0.00 2.69
206 207 2.750637 GGGACGTCGAGAGAGCCA 60.751 66.667 9.92 0.00 43.49 4.75
207 208 2.766400 GGGACGTCGAGAGAGCCAG 61.766 68.421 9.92 0.00 43.49 4.85
208 209 2.101380 GACGTCGAGAGAGCCAGC 59.899 66.667 0.00 0.00 43.49 4.85
209 210 2.673341 ACGTCGAGAGAGCCAGCA 60.673 61.111 0.00 0.00 43.49 4.41
210 211 2.101965 CGTCGAGAGAGCCAGCAG 59.898 66.667 0.00 0.00 43.49 4.24
211 212 2.402572 CGTCGAGAGAGCCAGCAGA 61.403 63.158 0.00 0.00 43.49 4.26
212 213 1.886585 GTCGAGAGAGCCAGCAGAA 59.113 57.895 0.00 0.00 43.49 3.02
213 214 0.457681 GTCGAGAGAGCCAGCAGAAC 60.458 60.000 0.00 0.00 43.49 3.01
214 215 0.895559 TCGAGAGAGCCAGCAGAACA 60.896 55.000 0.00 0.00 34.84 3.18
215 216 0.037882 CGAGAGAGCCAGCAGAACAA 60.038 55.000 0.00 0.00 0.00 2.83
216 217 1.606480 CGAGAGAGCCAGCAGAACAAA 60.606 52.381 0.00 0.00 0.00 2.83
217 218 2.075338 GAGAGAGCCAGCAGAACAAAG 58.925 52.381 0.00 0.00 0.00 2.77
218 219 1.163554 GAGAGCCAGCAGAACAAAGG 58.836 55.000 0.00 0.00 0.00 3.11
219 220 0.892814 AGAGCCAGCAGAACAAAGGC 60.893 55.000 0.00 0.00 45.54 4.35
220 221 2.256461 GCCAGCAGAACAAAGGCG 59.744 61.111 0.00 0.00 35.42 5.52
221 222 2.260869 GCCAGCAGAACAAAGGCGA 61.261 57.895 0.00 0.00 35.42 5.54
222 223 1.795170 GCCAGCAGAACAAAGGCGAA 61.795 55.000 0.00 0.00 35.42 4.70
223 224 0.040067 CCAGCAGAACAAAGGCGAAC 60.040 55.000 0.00 0.00 0.00 3.95
224 225 0.040067 CAGCAGAACAAAGGCGAACC 60.040 55.000 0.00 0.00 0.00 3.62
233 234 4.796408 AGGCGAACCTCCAGATCT 57.204 55.556 0.00 0.00 46.34 2.75
234 235 2.206635 AGGCGAACCTCCAGATCTG 58.793 57.895 16.24 16.24 46.34 2.90
235 236 0.324738 AGGCGAACCTCCAGATCTGA 60.325 55.000 24.62 9.26 46.34 3.27
236 237 0.179097 GGCGAACCTCCAGATCTGAC 60.179 60.000 24.62 7.02 0.00 3.51
237 238 0.532573 GCGAACCTCCAGATCTGACA 59.467 55.000 24.62 9.10 0.00 3.58
238 239 1.737363 GCGAACCTCCAGATCTGACAC 60.737 57.143 24.62 7.99 0.00 3.67
239 240 1.546029 CGAACCTCCAGATCTGACACA 59.454 52.381 24.62 4.06 0.00 3.72
240 241 2.029020 CGAACCTCCAGATCTGACACAA 60.029 50.000 24.62 3.27 0.00 3.33
241 242 3.368843 CGAACCTCCAGATCTGACACAAT 60.369 47.826 24.62 5.50 0.00 2.71
242 243 4.142160 CGAACCTCCAGATCTGACACAATA 60.142 45.833 24.62 0.00 0.00 1.90
243 244 5.350504 AACCTCCAGATCTGACACAATAG 57.649 43.478 24.62 4.68 0.00 1.73
244 245 4.614475 ACCTCCAGATCTGACACAATAGA 58.386 43.478 24.62 8.88 0.00 1.98
245 246 4.648762 ACCTCCAGATCTGACACAATAGAG 59.351 45.833 24.62 17.13 0.00 2.43
246 247 4.501229 CCTCCAGATCTGACACAATAGAGC 60.501 50.000 24.62 0.00 0.00 4.09
247 248 4.026052 TCCAGATCTGACACAATAGAGCA 58.974 43.478 24.62 0.00 32.03 4.26
248 249 4.118410 CCAGATCTGACACAATAGAGCAC 58.882 47.826 24.62 0.00 32.03 4.40
249 250 4.118410 CAGATCTGACACAATAGAGCACC 58.882 47.826 18.34 0.00 32.03 5.01
250 251 2.654749 TCTGACACAATAGAGCACCG 57.345 50.000 0.00 0.00 0.00 4.94
251 252 1.893137 TCTGACACAATAGAGCACCGT 59.107 47.619 0.00 0.00 0.00 4.83
252 253 1.995484 CTGACACAATAGAGCACCGTG 59.005 52.381 0.00 0.00 0.00 4.94
253 254 0.721718 GACACAATAGAGCACCGTGC 59.278 55.000 16.04 16.04 45.46 5.34
254 255 0.673644 ACACAATAGAGCACCGTGCC 60.674 55.000 19.96 11.38 46.52 5.01
255 256 1.447838 ACAATAGAGCACCGTGCCG 60.448 57.895 19.96 4.74 46.52 5.69
256 257 2.511600 AATAGAGCACCGTGCCGC 60.512 61.111 19.96 12.38 46.52 6.53
257 258 4.530857 ATAGAGCACCGTGCCGCC 62.531 66.667 19.96 9.64 46.52 6.13
266 267 4.690719 CGTGCCGCCCCTGTACAA 62.691 66.667 0.00 0.00 0.00 2.41
267 268 2.281900 GTGCCGCCCCTGTACAAA 60.282 61.111 0.00 0.00 0.00 2.83
268 269 2.281900 TGCCGCCCCTGTACAAAC 60.282 61.111 0.00 0.00 0.00 2.93
269 270 3.428282 GCCGCCCCTGTACAAACG 61.428 66.667 0.00 0.00 0.00 3.60
270 271 3.428282 CCGCCCCTGTACAAACGC 61.428 66.667 0.00 0.00 0.00 4.84
271 272 2.666862 CGCCCCTGTACAAACGCA 60.667 61.111 0.00 0.00 0.00 5.24
272 273 2.255172 CGCCCCTGTACAAACGCAA 61.255 57.895 0.00 0.00 0.00 4.85
288 289 3.575858 CGCAAGTGCTCATACATACAC 57.424 47.619 1.21 0.00 39.32 2.90
289 290 2.034591 CGCAAGTGCTCATACATACACG 60.035 50.000 1.21 0.00 38.08 4.49
290 291 2.285834 GCAAGTGCTCATACATACACGC 60.286 50.000 0.00 0.00 38.08 5.34
291 292 2.929398 CAAGTGCTCATACATACACGCA 59.071 45.455 0.00 0.00 38.08 5.24
292 293 3.459232 AGTGCTCATACATACACGCAT 57.541 42.857 0.00 0.00 38.08 4.73
293 294 4.584327 AGTGCTCATACATACACGCATA 57.416 40.909 0.00 0.00 38.08 3.14
294 295 4.299155 AGTGCTCATACATACACGCATAC 58.701 43.478 0.00 0.00 38.08 2.39
295 296 4.048504 GTGCTCATACATACACGCATACA 58.951 43.478 0.00 0.00 0.00 2.29
296 297 4.686091 GTGCTCATACATACACGCATACAT 59.314 41.667 0.00 0.00 0.00 2.29
297 298 4.685628 TGCTCATACATACACGCATACATG 59.314 41.667 0.00 0.00 0.00 3.21
311 312 2.613026 TACATGCACCCCTATGAACG 57.387 50.000 0.00 0.00 0.00 3.95
312 313 0.748005 ACATGCACCCCTATGAACGC 60.748 55.000 0.00 0.00 0.00 4.84
313 314 0.747644 CATGCACCCCTATGAACGCA 60.748 55.000 0.00 0.00 0.00 5.24
314 315 0.748005 ATGCACCCCTATGAACGCAC 60.748 55.000 0.00 0.00 31.22 5.34
315 316 1.376683 GCACCCCTATGAACGCACA 60.377 57.895 0.00 0.00 0.00 4.57
316 317 1.644786 GCACCCCTATGAACGCACAC 61.645 60.000 0.00 0.00 0.00 3.82
318 319 2.461110 CCCCTATGAACGCACACGC 61.461 63.158 0.00 0.00 45.53 5.34
328 329 4.335525 GCACACGCGTGACACGTC 62.336 66.667 42.94 20.50 46.80 4.34
329 330 2.952264 CACACGCGTGACACGTCA 60.952 61.111 42.94 0.00 46.80 4.35
342 343 4.603216 CGTCACCGTATCGTAGGC 57.397 61.111 0.00 0.00 0.00 3.93
343 344 1.368493 CGTCACCGTATCGTAGGCG 60.368 63.158 0.00 0.00 39.92 5.52
344 345 1.723870 GTCACCGTATCGTAGGCGT 59.276 57.895 0.00 0.00 39.49 5.68
345 346 0.316524 GTCACCGTATCGTAGGCGTC 60.317 60.000 0.00 0.00 39.49 5.19
346 347 0.462581 TCACCGTATCGTAGGCGTCT 60.463 55.000 0.00 0.00 39.49 4.18
347 348 0.379669 CACCGTATCGTAGGCGTCTT 59.620 55.000 0.00 0.00 39.49 3.01
348 349 0.379669 ACCGTATCGTAGGCGTCTTG 59.620 55.000 0.00 0.00 39.49 3.02
349 350 0.379669 CCGTATCGTAGGCGTCTTGT 59.620 55.000 0.00 0.00 39.49 3.16
350 351 1.596464 CCGTATCGTAGGCGTCTTGTC 60.596 57.143 0.00 0.00 39.49 3.18
351 352 1.739618 GTATCGTAGGCGTCTTGTCG 58.260 55.000 0.00 0.00 39.49 4.35
352 353 1.063174 GTATCGTAGGCGTCTTGTCGT 59.937 52.381 0.00 0.00 39.49 4.34
353 354 0.098376 ATCGTAGGCGTCTTGTCGTC 59.902 55.000 0.00 0.00 39.49 4.20
354 355 1.862147 CGTAGGCGTCTTGTCGTCG 60.862 63.158 0.00 0.00 40.52 5.12
355 356 1.499056 GTAGGCGTCTTGTCGTCGA 59.501 57.895 0.00 0.00 40.52 4.20
356 357 0.792356 GTAGGCGTCTTGTCGTCGAC 60.792 60.000 18.51 18.51 40.52 4.20
359 360 2.501222 CGTCTTGTCGTCGACGGG 60.501 66.667 35.05 22.16 46.61 5.28
360 361 2.949106 GTCTTGTCGTCGACGGGA 59.051 61.111 35.05 23.80 40.29 5.14
361 362 1.283793 GTCTTGTCGTCGACGGGAA 59.716 57.895 35.05 25.26 40.29 3.97
362 363 1.000736 GTCTTGTCGTCGACGGGAAC 61.001 60.000 35.05 26.09 40.29 3.62
375 376 2.964343 GGGAACGTCTCCTCTCACT 58.036 57.895 13.94 0.00 44.68 3.41
376 377 2.125773 GGGAACGTCTCCTCTCACTA 57.874 55.000 13.94 0.00 44.68 2.74
377 378 2.444421 GGGAACGTCTCCTCTCACTAA 58.556 52.381 13.94 0.00 44.68 2.24
378 379 2.824341 GGGAACGTCTCCTCTCACTAAA 59.176 50.000 13.94 0.00 44.68 1.85
379 380 3.257624 GGGAACGTCTCCTCTCACTAAAA 59.742 47.826 13.94 0.00 44.68 1.52
380 381 4.487019 GGAACGTCTCCTCTCACTAAAAG 58.513 47.826 8.87 0.00 41.61 2.27
381 382 3.579335 ACGTCTCCTCTCACTAAAAGC 57.421 47.619 0.00 0.00 0.00 3.51
382 383 2.095161 ACGTCTCCTCTCACTAAAAGCG 60.095 50.000 0.00 0.00 0.00 4.68
383 384 2.263945 GTCTCCTCTCACTAAAAGCGC 58.736 52.381 0.00 0.00 0.00 5.92
384 385 1.893137 TCTCCTCTCACTAAAAGCGCA 59.107 47.619 11.47 0.00 0.00 6.09
385 386 2.497675 TCTCCTCTCACTAAAAGCGCAT 59.502 45.455 11.47 0.00 0.00 4.73
386 387 2.863137 CTCCTCTCACTAAAAGCGCATC 59.137 50.000 11.47 0.00 0.00 3.91
387 388 2.233676 TCCTCTCACTAAAAGCGCATCA 59.766 45.455 11.47 0.00 0.00 3.07
388 389 2.349886 CCTCTCACTAAAAGCGCATCAC 59.650 50.000 11.47 0.00 0.00 3.06
389 390 2.346803 TCTCACTAAAAGCGCATCACC 58.653 47.619 11.47 0.00 0.00 4.02
390 391 1.061131 CTCACTAAAAGCGCATCACCG 59.939 52.381 11.47 0.00 0.00 4.94
391 392 0.096976 CACTAAAAGCGCATCACCGG 59.903 55.000 11.47 0.00 0.00 5.28
392 393 0.036765 ACTAAAAGCGCATCACCGGA 60.037 50.000 9.46 0.00 0.00 5.14
393 394 1.299541 CTAAAAGCGCATCACCGGAT 58.700 50.000 9.46 0.00 0.00 4.18
394 395 2.159014 ACTAAAAGCGCATCACCGGATA 60.159 45.455 9.46 0.00 30.87 2.59
395 396 1.967319 AAAAGCGCATCACCGGATAT 58.033 45.000 9.46 0.00 30.87 1.63
396 397 1.967319 AAAGCGCATCACCGGATATT 58.033 45.000 9.46 0.00 30.87 1.28
397 398 1.512926 AAGCGCATCACCGGATATTC 58.487 50.000 9.46 0.00 30.87 1.75
398 399 0.320771 AGCGCATCACCGGATATTCC 60.321 55.000 9.46 0.00 30.87 3.01
399 400 0.320771 GCGCATCACCGGATATTCCT 60.321 55.000 9.46 0.00 33.30 3.36
400 401 1.432514 CGCATCACCGGATATTCCTG 58.567 55.000 9.46 0.00 33.30 3.86
401 402 1.000843 CGCATCACCGGATATTCCTGA 59.999 52.381 9.46 0.00 33.30 3.86
402 403 2.547855 CGCATCACCGGATATTCCTGAA 60.548 50.000 9.46 0.00 33.30 3.02
403 404 3.476552 GCATCACCGGATATTCCTGAAA 58.523 45.455 9.46 0.00 33.30 2.69
404 405 4.074970 GCATCACCGGATATTCCTGAAAT 58.925 43.478 9.46 0.00 33.30 2.17
405 406 5.245531 GCATCACCGGATATTCCTGAAATA 58.754 41.667 9.46 0.00 33.30 1.40
406 407 5.705441 GCATCACCGGATATTCCTGAAATAA 59.295 40.000 9.46 0.00 33.59 1.40
407 408 6.206634 GCATCACCGGATATTCCTGAAATAAA 59.793 38.462 9.46 0.00 33.59 1.40
408 409 7.094205 GCATCACCGGATATTCCTGAAATAAAT 60.094 37.037 9.46 0.00 33.59 1.40
409 410 8.796475 CATCACCGGATATTCCTGAAATAAATT 58.204 33.333 9.46 0.00 33.59 1.82
410 411 8.391075 TCACCGGATATTCCTGAAATAAATTC 57.609 34.615 9.46 0.00 38.60 2.17
411 412 7.996066 TCACCGGATATTCCTGAAATAAATTCA 59.004 33.333 9.46 0.00 45.71 2.57
432 433 9.618890 AATTCAGAAATAATTCGAGAATCAGGA 57.381 29.630 11.93 0.00 40.77 3.86
433 434 8.425577 TTCAGAAATAATTCGAGAATCAGGAC 57.574 34.615 0.00 0.00 40.63 3.85
434 435 7.786030 TCAGAAATAATTCGAGAATCAGGACT 58.214 34.615 0.00 0.00 40.63 3.85
435 436 7.708322 TCAGAAATAATTCGAGAATCAGGACTG 59.292 37.037 0.00 7.17 40.63 3.51
436 437 6.989169 AGAAATAATTCGAGAATCAGGACTGG 59.011 38.462 0.00 0.00 40.63 4.00
437 438 6.485830 AATAATTCGAGAATCAGGACTGGA 57.514 37.500 0.00 0.00 33.17 3.86
438 439 4.826274 AATTCGAGAATCAGGACTGGAA 57.174 40.909 0.00 0.00 35.91 3.53
439 440 3.594603 TTCGAGAATCAGGACTGGAAC 57.405 47.619 0.00 0.00 33.17 3.62
440 441 1.825474 TCGAGAATCAGGACTGGAACC 59.175 52.381 0.00 0.00 33.17 3.62
441 442 1.827969 CGAGAATCAGGACTGGAACCT 59.172 52.381 0.00 0.00 38.40 3.50
447 448 3.815717 AGGACTGGAACCTGATGGA 57.184 52.632 4.82 0.00 36.30 3.41
448 449 1.280457 AGGACTGGAACCTGATGGAC 58.720 55.000 4.82 0.00 36.30 4.02
449 450 1.203364 AGGACTGGAACCTGATGGACT 60.203 52.381 4.82 0.00 36.30 3.85
450 451 1.065854 GGACTGGAACCTGATGGACTG 60.066 57.143 4.82 0.00 37.04 3.51
451 452 0.987294 ACTGGAACCTGATGGACTGG 59.013 55.000 4.82 0.00 42.26 4.00
452 453 0.254178 CTGGAACCTGATGGACTGGG 59.746 60.000 0.00 0.00 41.11 4.45
453 454 0.178876 TGGAACCTGATGGACTGGGA 60.179 55.000 0.00 0.00 41.11 4.37
454 455 1.216990 GGAACCTGATGGACTGGGAT 58.783 55.000 0.00 0.00 41.11 3.85
455 456 2.293519 TGGAACCTGATGGACTGGGATA 60.294 50.000 0.00 0.00 41.11 2.59
456 457 2.104963 GGAACCTGATGGACTGGGATAC 59.895 54.545 0.00 0.00 41.11 2.24
471 472 3.081329 GGATACCACTGTCGCTCTAAC 57.919 52.381 0.00 0.00 0.00 2.34
472 473 2.223758 GGATACCACTGTCGCTCTAACC 60.224 54.545 0.00 0.00 0.00 2.85
473 474 1.913778 TACCACTGTCGCTCTAACCA 58.086 50.000 0.00 0.00 0.00 3.67
474 475 1.267121 ACCACTGTCGCTCTAACCAT 58.733 50.000 0.00 0.00 0.00 3.55
475 476 1.204941 ACCACTGTCGCTCTAACCATC 59.795 52.381 0.00 0.00 0.00 3.51
476 477 1.471676 CCACTGTCGCTCTAACCATCC 60.472 57.143 0.00 0.00 0.00 3.51
477 478 1.204704 CACTGTCGCTCTAACCATCCA 59.795 52.381 0.00 0.00 0.00 3.41
478 479 1.899814 ACTGTCGCTCTAACCATCCAA 59.100 47.619 0.00 0.00 0.00 3.53
479 480 2.271800 CTGTCGCTCTAACCATCCAAC 58.728 52.381 0.00 0.00 0.00 3.77
480 481 1.066430 TGTCGCTCTAACCATCCAACC 60.066 52.381 0.00 0.00 0.00 3.77
481 482 1.066430 GTCGCTCTAACCATCCAACCA 60.066 52.381 0.00 0.00 0.00 3.67
482 483 1.066430 TCGCTCTAACCATCCAACCAC 60.066 52.381 0.00 0.00 0.00 4.16
483 484 1.338674 CGCTCTAACCATCCAACCACA 60.339 52.381 0.00 0.00 0.00 4.17
484 485 2.680805 CGCTCTAACCATCCAACCACAT 60.681 50.000 0.00 0.00 0.00 3.21
485 486 2.684881 GCTCTAACCATCCAACCACATG 59.315 50.000 0.00 0.00 0.00 3.21
486 487 3.873801 GCTCTAACCATCCAACCACATGT 60.874 47.826 0.00 0.00 0.00 3.21
487 488 4.335416 CTCTAACCATCCAACCACATGTT 58.665 43.478 0.00 0.00 37.80 2.71
501 502 5.046910 CCACATGTTGGTTCACTACAATC 57.953 43.478 0.00 0.00 41.10 2.67
502 503 4.518590 CCACATGTTGGTTCACTACAATCA 59.481 41.667 0.00 0.00 41.10 2.57
503 504 5.335113 CCACATGTTGGTTCACTACAATCAG 60.335 44.000 0.00 0.00 41.10 2.90
504 505 5.469760 CACATGTTGGTTCACTACAATCAGA 59.530 40.000 0.00 0.00 38.29 3.27
505 506 6.017192 CACATGTTGGTTCACTACAATCAGAA 60.017 38.462 0.00 0.00 38.29 3.02
506 507 6.716628 ACATGTTGGTTCACTACAATCAGAAT 59.283 34.615 0.00 0.00 38.29 2.40
507 508 7.882791 ACATGTTGGTTCACTACAATCAGAATA 59.117 33.333 0.00 0.00 38.29 1.75
508 509 8.729756 CATGTTGGTTCACTACAATCAGAATAA 58.270 33.333 0.00 0.00 38.29 1.40
509 510 8.684386 TGTTGGTTCACTACAATCAGAATAAA 57.316 30.769 0.00 0.00 31.92 1.40
510 511 9.295825 TGTTGGTTCACTACAATCAGAATAAAT 57.704 29.630 0.00 0.00 31.92 1.40
513 514 9.513906 TGGTTCACTACAATCAGAATAAATTGA 57.486 29.630 2.36 0.00 36.57 2.57
514 515 9.774742 GGTTCACTACAATCAGAATAAATTGAC 57.225 33.333 2.36 0.00 36.57 3.18
515 516 9.478019 GTTCACTACAATCAGAATAAATTGACG 57.522 33.333 2.36 0.00 36.57 4.35
516 517 7.684670 TCACTACAATCAGAATAAATTGACGC 58.315 34.615 2.36 0.00 36.57 5.19
517 518 6.907212 CACTACAATCAGAATAAATTGACGCC 59.093 38.462 2.36 0.00 36.57 5.68
518 519 5.248870 ACAATCAGAATAAATTGACGCCC 57.751 39.130 2.36 0.00 36.57 6.13
519 520 4.704540 ACAATCAGAATAAATTGACGCCCA 59.295 37.500 2.36 0.00 36.57 5.36
520 521 5.184864 ACAATCAGAATAAATTGACGCCCAA 59.815 36.000 2.36 0.00 36.57 4.12
521 522 4.963276 TCAGAATAAATTGACGCCCAAG 57.037 40.909 0.00 0.00 38.31 3.61
522 523 4.331968 TCAGAATAAATTGACGCCCAAGT 58.668 39.130 0.00 0.00 38.31 3.16
523 524 4.394920 TCAGAATAAATTGACGCCCAAGTC 59.605 41.667 0.00 0.00 38.31 3.01
524 525 3.694566 AGAATAAATTGACGCCCAAGTCC 59.305 43.478 0.00 0.00 40.26 3.85
525 526 2.570415 TAAATTGACGCCCAAGTCCA 57.430 45.000 0.00 0.00 40.26 4.02
526 527 0.958822 AAATTGACGCCCAAGTCCAC 59.041 50.000 0.00 0.00 40.26 4.02
527 528 1.234615 AATTGACGCCCAAGTCCACG 61.235 55.000 0.00 0.00 40.26 4.94
528 529 2.107041 ATTGACGCCCAAGTCCACGA 62.107 55.000 0.00 0.00 40.26 4.35
529 530 2.737376 GACGCCCAAGTCCACGAC 60.737 66.667 0.00 0.00 35.22 4.34
530 531 3.222354 GACGCCCAAGTCCACGACT 62.222 63.158 0.00 0.00 45.64 4.18
531 532 1.870055 GACGCCCAAGTCCACGACTA 61.870 60.000 0.00 0.00 42.59 2.59
532 533 1.153823 CGCCCAAGTCCACGACTAG 60.154 63.158 0.00 0.00 42.59 2.57
533 534 1.592400 CGCCCAAGTCCACGACTAGA 61.592 60.000 0.00 0.00 42.59 2.43
534 535 0.173708 GCCCAAGTCCACGACTAGAG 59.826 60.000 0.00 0.00 42.59 2.43
535 536 0.818296 CCCAAGTCCACGACTAGAGG 59.182 60.000 0.00 0.00 42.59 3.69
536 537 1.616187 CCCAAGTCCACGACTAGAGGA 60.616 57.143 0.00 0.00 42.59 3.71
537 538 1.746220 CCAAGTCCACGACTAGAGGAG 59.254 57.143 0.00 0.00 42.59 3.69
538 539 1.746220 CAAGTCCACGACTAGAGGAGG 59.254 57.143 0.00 0.00 42.59 4.30
539 540 0.394625 AGTCCACGACTAGAGGAGGC 60.395 60.000 0.00 0.00 41.51 4.70
540 541 0.680280 GTCCACGACTAGAGGAGGCA 60.680 60.000 0.00 0.00 40.31 4.75
541 542 0.680280 TCCACGACTAGAGGAGGCAC 60.680 60.000 0.00 0.00 34.59 5.01
542 543 1.429825 CACGACTAGAGGAGGCACG 59.570 63.158 0.00 0.00 28.99 5.34
543 544 1.749638 ACGACTAGAGGAGGCACGG 60.750 63.158 0.00 0.00 28.99 4.94
544 545 2.809010 GACTAGAGGAGGCACGGC 59.191 66.667 0.00 0.00 30.86 5.68
545 546 3.127352 GACTAGAGGAGGCACGGCG 62.127 68.421 4.80 4.80 30.86 6.46
546 547 2.829003 CTAGAGGAGGCACGGCGA 60.829 66.667 16.62 0.00 0.00 5.54
547 548 2.361992 TAGAGGAGGCACGGCGAA 60.362 61.111 16.62 0.00 0.00 4.70
548 549 1.739338 CTAGAGGAGGCACGGCGAAT 61.739 60.000 16.62 0.00 0.00 3.34
549 550 1.327690 TAGAGGAGGCACGGCGAATT 61.328 55.000 16.62 0.00 0.00 2.17
550 551 2.125106 AGGAGGCACGGCGAATTC 60.125 61.111 16.62 5.38 0.00 2.17
551 552 2.125106 GGAGGCACGGCGAATTCT 60.125 61.111 16.62 5.12 0.00 2.40
552 553 1.745489 GGAGGCACGGCGAATTCTT 60.745 57.895 16.62 0.00 0.00 2.52
553 554 1.706287 GGAGGCACGGCGAATTCTTC 61.706 60.000 16.62 5.02 0.00 2.87
554 555 0.741221 GAGGCACGGCGAATTCTTCT 60.741 55.000 16.62 0.36 0.00 2.85
555 556 0.741221 AGGCACGGCGAATTCTTCTC 60.741 55.000 16.62 0.00 0.00 2.87
556 557 1.706287 GGCACGGCGAATTCTTCTCC 61.706 60.000 16.62 0.00 0.00 3.71
557 558 1.019278 GCACGGCGAATTCTTCTCCA 61.019 55.000 16.62 0.00 34.18 3.86
558 559 1.438651 CACGGCGAATTCTTCTCCAA 58.561 50.000 16.62 0.00 34.18 3.53
559 560 2.009774 CACGGCGAATTCTTCTCCAAT 58.990 47.619 16.62 0.00 34.18 3.16
560 561 2.420022 CACGGCGAATTCTTCTCCAATT 59.580 45.455 16.62 0.00 34.18 2.32
561 562 3.621268 CACGGCGAATTCTTCTCCAATTA 59.379 43.478 16.62 0.00 34.18 1.40
562 563 4.273480 CACGGCGAATTCTTCTCCAATTAT 59.727 41.667 16.62 0.00 34.18 1.28
563 564 5.465390 CACGGCGAATTCTTCTCCAATTATA 59.535 40.000 16.62 0.00 34.18 0.98
564 565 6.147821 CACGGCGAATTCTTCTCCAATTATAT 59.852 38.462 16.62 0.00 34.18 0.86
565 566 6.147821 ACGGCGAATTCTTCTCCAATTATATG 59.852 38.462 16.62 0.00 34.18 1.78
566 567 6.317857 GGCGAATTCTTCTCCAATTATATGC 58.682 40.000 3.52 0.00 34.68 3.14
567 568 6.150140 GGCGAATTCTTCTCCAATTATATGCT 59.850 38.462 3.52 0.00 34.68 3.79
568 569 7.334421 GGCGAATTCTTCTCCAATTATATGCTA 59.666 37.037 3.52 0.00 34.68 3.49
569 570 8.171840 GCGAATTCTTCTCCAATTATATGCTAC 58.828 37.037 3.52 0.00 0.00 3.58
570 571 8.660373 CGAATTCTTCTCCAATTATATGCTACC 58.340 37.037 3.52 0.00 0.00 3.18
571 572 9.507329 GAATTCTTCTCCAATTATATGCTACCA 57.493 33.333 0.00 0.00 0.00 3.25
572 573 9.512588 AATTCTTCTCCAATTATATGCTACCAG 57.487 33.333 0.00 0.00 0.00 4.00
573 574 7.618019 TCTTCTCCAATTATATGCTACCAGT 57.382 36.000 0.00 0.00 0.00 4.00
574 575 7.671302 TCTTCTCCAATTATATGCTACCAGTC 58.329 38.462 0.00 0.00 0.00 3.51
575 576 7.510685 TCTTCTCCAATTATATGCTACCAGTCT 59.489 37.037 0.00 0.00 0.00 3.24
576 577 6.997655 TCTCCAATTATATGCTACCAGTCTG 58.002 40.000 0.00 0.00 0.00 3.51
577 578 6.014242 TCTCCAATTATATGCTACCAGTCTGG 60.014 42.308 17.88 17.88 45.02 3.86
592 593 6.710597 CCAGTCTGGTATACTAGTTGCTAA 57.289 41.667 15.09 0.00 31.35 3.09
593 594 6.505272 CCAGTCTGGTATACTAGTTGCTAAC 58.495 44.000 15.09 5.90 31.35 2.34
594 595 6.321690 CCAGTCTGGTATACTAGTTGCTAACT 59.678 42.308 15.09 7.91 37.91 2.24
670 671 2.742053 CAACTTACATCAACAGGGACGG 59.258 50.000 0.00 0.00 0.00 4.79
677 678 0.544357 TCAACAGGGACGGTCCAGAT 60.544 55.000 27.32 11.94 38.64 2.90
678 679 1.191535 CAACAGGGACGGTCCAGATA 58.808 55.000 27.32 0.00 38.64 1.98
704 724 2.028190 CTCGCCCGGACATAGCAG 59.972 66.667 0.73 0.00 0.00 4.24
709 729 1.758440 GCCCGGACATAGCAGGATCA 61.758 60.000 0.73 0.00 0.00 2.92
724 744 1.337447 GGATCACCGTCGTTTTCCTCA 60.337 52.381 0.00 0.00 0.00 3.86
727 747 0.595567 CACCGTCGTTTTCCTCACGA 60.596 55.000 0.00 0.00 44.25 4.35
860 895 3.666975 ATATACCCAGCCTTTCCCCTA 57.333 47.619 0.00 0.00 0.00 3.53
862 897 0.119561 TACCCAGCCTTTCCCCTACA 59.880 55.000 0.00 0.00 0.00 2.74
889 941 0.036010 CCACCCAACTCATTCGCTCT 60.036 55.000 0.00 0.00 0.00 4.09
893 945 1.554392 CCAACTCATTCGCTCTCTCG 58.446 55.000 0.00 0.00 0.00 4.04
894 946 1.135257 CCAACTCATTCGCTCTCTCGT 60.135 52.381 0.00 0.00 0.00 4.18
895 947 2.600731 CAACTCATTCGCTCTCTCGTT 58.399 47.619 0.00 0.00 0.00 3.85
896 948 2.553079 ACTCATTCGCTCTCTCGTTC 57.447 50.000 0.00 0.00 0.00 3.95
897 949 2.088423 ACTCATTCGCTCTCTCGTTCT 58.912 47.619 0.00 0.00 0.00 3.01
898 950 2.096819 ACTCATTCGCTCTCTCGTTCTC 59.903 50.000 0.00 0.00 0.00 2.87
899 951 1.402259 TCATTCGCTCTCTCGTTCTCC 59.598 52.381 0.00 0.00 0.00 3.71
900 952 1.403679 CATTCGCTCTCTCGTTCTCCT 59.596 52.381 0.00 0.00 0.00 3.69
904 978 1.021968 GCTCTCTCGTTCTCCTCTCC 58.978 60.000 0.00 0.00 0.00 3.71
906 980 0.256464 TCTCTCGTTCTCCTCTCCCC 59.744 60.000 0.00 0.00 0.00 4.81
914 988 3.003173 TCCTCTCCCCGCACCAAG 61.003 66.667 0.00 0.00 0.00 3.61
923 1000 2.559840 CGCACCAAGAGCAGCAAG 59.440 61.111 0.00 0.00 0.00 4.01
924 1001 1.962822 CGCACCAAGAGCAGCAAGA 60.963 57.895 0.00 0.00 0.00 3.02
925 1002 1.874562 GCACCAAGAGCAGCAAGAG 59.125 57.895 0.00 0.00 0.00 2.85
937 1014 3.741476 CAAGAGGCAAGCGCACCC 61.741 66.667 11.47 6.52 41.24 4.61
964 1042 4.698583 CTAAGCTCTGCTCAGCAATTTT 57.301 40.909 0.00 0.00 42.40 1.82
986 1070 5.617528 TCTCCAAAGTAACCTACACACAA 57.382 39.130 0.00 0.00 0.00 3.33
1066 1161 4.760047 GTGAGCCCGACATGCCGT 62.760 66.667 0.00 0.00 0.00 5.68
1141 1236 1.002659 TCATGTACAAAGGGGACACGG 59.997 52.381 0.00 0.00 0.00 4.94
1149 1244 3.001406 GGGGACACGGCCTACTGT 61.001 66.667 0.00 0.00 35.02 3.55
1321 1424 1.679153 TGGCCGAGGAAAGTTTTGTTC 59.321 47.619 0.00 0.00 0.00 3.18
1326 1429 4.083696 GCCGAGGAAAGTTTTGTTCGAATA 60.084 41.667 0.00 0.00 0.00 1.75
1336 1439 7.050281 AGTTTTGTTCGAATAGACAAGATCG 57.950 36.000 0.00 0.00 36.67 3.69
1362 1465 7.380602 GGAATTCTGAAGAAAACAACATCTGTG 59.619 37.037 5.23 0.00 35.65 3.66
1366 1504 2.665165 AGAAAACAACATCTGTGGGCA 58.335 42.857 0.00 0.00 38.67 5.36
1405 1543 4.704833 GCCGGTGCTCTTGCCTCA 62.705 66.667 1.90 0.00 38.71 3.86
1411 1549 2.347490 GCTCTTGCCTCAACCGGA 59.653 61.111 9.46 0.00 0.00 5.14
1425 1563 4.528674 CGGAGGAAGCATCAGGTG 57.471 61.111 0.00 0.00 0.00 4.00
1426 1564 1.153289 CGGAGGAAGCATCAGGTGG 60.153 63.158 0.00 0.00 0.00 4.61
1427 1565 1.452833 GGAGGAAGCATCAGGTGGC 60.453 63.158 0.00 0.00 0.00 5.01
1428 1566 1.300963 GAGGAAGCATCAGGTGGCA 59.699 57.895 0.00 0.00 0.00 4.92
1429 1567 1.001641 AGGAAGCATCAGGTGGCAC 60.002 57.895 9.70 9.70 0.00 5.01
1430 1568 2.401766 GGAAGCATCAGGTGGCACG 61.402 63.158 12.17 0.00 0.00 5.34
1431 1569 1.375908 GAAGCATCAGGTGGCACGA 60.376 57.895 12.17 4.49 0.00 4.35
1432 1570 0.955428 GAAGCATCAGGTGGCACGAA 60.955 55.000 12.17 0.00 0.00 3.85
1433 1571 0.957395 AAGCATCAGGTGGCACGAAG 60.957 55.000 12.17 3.88 0.00 3.79
1434 1572 3.044059 GCATCAGGTGGCACGAAGC 62.044 63.158 12.17 9.12 44.65 3.86
1471 1610 2.093973 GGAGAGAGAAGGATTGTTGCGA 60.094 50.000 0.00 0.00 0.00 5.10
1476 1615 6.173339 AGAGAGAAGGATTGTTGCGAAATAA 58.827 36.000 0.00 0.00 0.00 1.40
1477 1616 6.825721 AGAGAGAAGGATTGTTGCGAAATAAT 59.174 34.615 0.00 0.00 0.00 1.28
1521 1667 8.913487 TCGAGGGCGAGTATATATATATTGAA 57.087 34.615 10.48 0.00 42.51 2.69
1597 1743 9.057089 GGATTACAAATCCTAGACTACCAAATG 57.943 37.037 10.76 0.00 35.36 2.32
1600 1746 5.648092 ACAAATCCTAGACTACCAAATGCAC 59.352 40.000 0.00 0.00 0.00 4.57
1696 1843 3.287222 GTCAGACTGGAGAGAGTAGCAT 58.713 50.000 1.81 0.00 0.00 3.79
1820 1967 1.816074 TGATAACCCTTTGTGCCGAC 58.184 50.000 0.00 0.00 0.00 4.79
1860 2007 2.428622 GGTGGTGTAGCCGTGGTT 59.571 61.111 0.00 0.00 41.21 3.67
1873 2020 0.313043 CGTGGTTGAGGTAGTCGTGT 59.687 55.000 0.00 0.00 0.00 4.49
1971 2118 1.671054 CCGAGTTTGTCATGGGCGT 60.671 57.895 0.00 0.00 0.00 5.68
2115 2262 1.229975 TGCGTAGACGGACGAAGACA 61.230 55.000 10.44 0.00 45.82 3.41
2248 2395 2.736144 TACGCCATGTCGAAGAAGTT 57.264 45.000 1.83 0.00 39.69 2.66
2250 2397 1.270094 ACGCCATGTCGAAGAAGTTGA 60.270 47.619 1.83 0.00 39.69 3.18
2281 2428 1.380524 GAGAAGGACTCGACGATGGA 58.619 55.000 0.00 0.00 35.84 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.907042 AGGCAGAGTGCTAAGGTTTAGT 59.093 45.455 0.00 0.00 44.28 2.24
5 6 3.328050 AGTTTAGGCAGAGTGCTAAGGTT 59.672 43.478 0.00 0.00 44.28 3.50
6 7 2.907042 AGTTTAGGCAGAGTGCTAAGGT 59.093 45.455 0.00 0.00 44.28 3.50
7 8 3.618690 AGTTTAGGCAGAGTGCTAAGG 57.381 47.619 0.00 0.00 44.28 2.69
8 9 6.920758 CAGTATAGTTTAGGCAGAGTGCTAAG 59.079 42.308 0.00 0.00 44.28 2.18
9 10 6.605995 TCAGTATAGTTTAGGCAGAGTGCTAA 59.394 38.462 0.00 0.00 44.28 3.09
10 11 6.127101 TCAGTATAGTTTAGGCAGAGTGCTA 58.873 40.000 0.00 0.00 44.28 3.49
11 12 4.956700 TCAGTATAGTTTAGGCAGAGTGCT 59.043 41.667 0.00 0.00 44.28 4.40
12 13 5.263968 TCAGTATAGTTTAGGCAGAGTGC 57.736 43.478 0.00 0.00 44.08 4.40
13 14 8.723942 AAAATCAGTATAGTTTAGGCAGAGTG 57.276 34.615 0.00 0.00 0.00 3.51
37 38 6.120220 AGGTCTTCCTTCTTTTCGAGAAAAA 58.880 36.000 11.50 0.00 43.56 1.94
38 39 5.681639 AGGTCTTCCTTCTTTTCGAGAAAA 58.318 37.500 10.17 10.17 43.56 2.29
39 40 5.291905 AGGTCTTCCTTCTTTTCGAGAAA 57.708 39.130 0.00 0.00 43.56 2.52
40 41 4.262506 GGAGGTCTTCCTTCTTTTCGAGAA 60.263 45.833 0.00 0.00 45.24 2.87
41 42 3.258622 GGAGGTCTTCCTTCTTTTCGAGA 59.741 47.826 0.00 0.00 45.24 4.04
42 43 3.591023 GGAGGTCTTCCTTCTTTTCGAG 58.409 50.000 0.00 0.00 45.24 4.04
43 44 2.029290 CGGAGGTCTTCCTTCTTTTCGA 60.029 50.000 0.00 0.00 45.24 3.71
44 45 2.338500 CGGAGGTCTTCCTTCTTTTCG 58.662 52.381 0.00 0.00 45.24 3.46
60 61 1.445095 CCAGATTCAGAGGCCGGAG 59.555 63.158 5.05 0.00 0.00 4.63
61 62 2.066393 CCCAGATTCAGAGGCCGGA 61.066 63.158 5.05 0.00 0.00 5.14
62 63 2.370445 ACCCAGATTCAGAGGCCGG 61.370 63.158 0.00 0.00 0.00 6.13
63 64 1.153289 CACCCAGATTCAGAGGCCG 60.153 63.158 0.00 0.00 0.00 6.13
64 65 0.842635 ATCACCCAGATTCAGAGGCC 59.157 55.000 0.00 0.00 31.20 5.19
65 66 1.964552 CATCACCCAGATTCAGAGGC 58.035 55.000 0.00 0.00 33.72 4.70
66 67 1.211212 TGCATCACCCAGATTCAGAGG 59.789 52.381 0.00 0.00 33.72 3.69
67 68 2.704464 TGCATCACCCAGATTCAGAG 57.296 50.000 0.00 0.00 33.72 3.35
68 69 2.927028 CATGCATCACCCAGATTCAGA 58.073 47.619 0.00 0.00 33.41 3.27
69 70 1.337071 GCATGCATCACCCAGATTCAG 59.663 52.381 14.21 0.00 33.41 3.02
70 71 1.341187 TGCATGCATCACCCAGATTCA 60.341 47.619 18.46 0.00 34.41 2.57
71 72 1.395635 TGCATGCATCACCCAGATTC 58.604 50.000 18.46 0.00 33.72 2.52
72 73 1.479323 GTTGCATGCATCACCCAGATT 59.521 47.619 23.37 0.00 33.72 2.40
73 74 1.108776 GTTGCATGCATCACCCAGAT 58.891 50.000 23.37 0.00 37.48 2.90
74 75 0.966875 GGTTGCATGCATCACCCAGA 60.967 55.000 25.17 5.37 0.00 3.86
75 76 1.252215 TGGTTGCATGCATCACCCAG 61.252 55.000 29.94 0.00 0.00 4.45
76 77 0.615261 ATGGTTGCATGCATCACCCA 60.615 50.000 29.94 26.30 0.00 4.51
77 78 0.538118 AATGGTTGCATGCATCACCC 59.462 50.000 29.94 22.62 0.00 4.61
78 79 2.389962 AAATGGTTGCATGCATCACC 57.610 45.000 27.66 27.66 0.00 4.02
79 80 5.110598 TGATAAAATGGTTGCATGCATCAC 58.889 37.500 23.37 17.58 0.00 3.06
80 81 5.340439 TGATAAAATGGTTGCATGCATCA 57.660 34.783 23.37 22.09 0.00 3.07
81 82 6.854496 ATTGATAAAATGGTTGCATGCATC 57.146 33.333 23.37 20.66 0.00 3.91
82 83 8.911918 ATAATTGATAAAATGGTTGCATGCAT 57.088 26.923 23.37 7.12 0.00 3.96
83 84 8.734218 AATAATTGATAAAATGGTTGCATGCA 57.266 26.923 18.46 18.46 0.00 3.96
84 85 8.828644 TGAATAATTGATAAAATGGTTGCATGC 58.171 29.630 11.82 11.82 0.00 4.06
86 87 9.887629 TGTGAATAATTGATAAAATGGTTGCAT 57.112 25.926 0.00 0.00 0.00 3.96
87 88 9.716531 TTGTGAATAATTGATAAAATGGTTGCA 57.283 25.926 0.00 0.00 0.00 4.08
107 108 9.168451 TGTATCACTTTGTAAGTTCTTTGTGAA 57.832 29.630 0.00 0.00 40.46 3.18
108 109 8.725405 TGTATCACTTTGTAAGTTCTTTGTGA 57.275 30.769 0.00 0.00 40.46 3.58
109 110 9.599322 GATGTATCACTTTGTAAGTTCTTTGTG 57.401 33.333 0.00 0.00 40.46 3.33
110 111 9.337396 TGATGTATCACTTTGTAAGTTCTTTGT 57.663 29.630 0.00 0.00 40.46 2.83
111 112 9.817365 CTGATGTATCACTTTGTAAGTTCTTTG 57.183 33.333 0.00 0.00 40.46 2.77
112 113 9.561069 ACTGATGTATCACTTTGTAAGTTCTTT 57.439 29.630 0.00 0.00 40.46 2.52
116 117 9.998106 ACTTACTGATGTATCACTTTGTAAGTT 57.002 29.630 20.33 11.78 44.12 2.66
117 118 9.640963 GACTTACTGATGTATCACTTTGTAAGT 57.359 33.333 23.25 23.25 46.34 2.24
118 119 9.862371 AGACTTACTGATGTATCACTTTGTAAG 57.138 33.333 19.52 19.52 42.00 2.34
125 126 9.244292 TGACTTTAGACTTACTGATGTATCACT 57.756 33.333 0.00 0.00 32.50 3.41
126 127 9.291664 GTGACTTTAGACTTACTGATGTATCAC 57.708 37.037 0.00 0.00 32.50 3.06
127 128 8.467598 GGTGACTTTAGACTTACTGATGTATCA 58.532 37.037 0.00 0.00 35.16 2.15
128 129 7.644551 CGGTGACTTTAGACTTACTGATGTATC 59.355 40.741 0.00 0.00 0.00 2.24
129 130 7.122353 ACGGTGACTTTAGACTTACTGATGTAT 59.878 37.037 0.00 0.00 0.00 2.29
130 131 6.432162 ACGGTGACTTTAGACTTACTGATGTA 59.568 38.462 0.00 0.00 0.00 2.29
131 132 5.243283 ACGGTGACTTTAGACTTACTGATGT 59.757 40.000 0.00 0.00 0.00 3.06
132 133 5.710984 ACGGTGACTTTAGACTTACTGATG 58.289 41.667 0.00 0.00 0.00 3.07
133 134 5.979288 ACGGTGACTTTAGACTTACTGAT 57.021 39.130 0.00 0.00 0.00 2.90
134 135 5.779529 AACGGTGACTTTAGACTTACTGA 57.220 39.130 0.00 0.00 0.00 3.41
135 136 6.477688 TCAAAACGGTGACTTTAGACTTACTG 59.522 38.462 0.00 0.00 0.00 2.74
136 137 6.576185 TCAAAACGGTGACTTTAGACTTACT 58.424 36.000 0.00 0.00 0.00 2.24
137 138 6.833342 TCAAAACGGTGACTTTAGACTTAC 57.167 37.500 0.00 0.00 0.00 2.34
138 139 7.170320 GTCATCAAAACGGTGACTTTAGACTTA 59.830 37.037 0.00 0.00 39.24 2.24
139 140 6.018180 GTCATCAAAACGGTGACTTTAGACTT 60.018 38.462 0.00 0.00 39.24 3.01
140 141 5.465724 GTCATCAAAACGGTGACTTTAGACT 59.534 40.000 0.00 0.00 39.24 3.24
141 142 5.235616 TGTCATCAAAACGGTGACTTTAGAC 59.764 40.000 6.99 0.00 42.03 2.59
142 143 5.361427 TGTCATCAAAACGGTGACTTTAGA 58.639 37.500 6.99 0.00 42.03 2.10
143 144 5.666969 TGTCATCAAAACGGTGACTTTAG 57.333 39.130 6.99 0.00 42.03 1.85
144 145 5.561919 GCATGTCATCAAAACGGTGACTTTA 60.562 40.000 6.99 0.00 42.03 1.85
145 146 4.792704 GCATGTCATCAAAACGGTGACTTT 60.793 41.667 6.99 0.00 42.03 2.66
146 147 3.304659 GCATGTCATCAAAACGGTGACTT 60.305 43.478 6.99 0.00 42.03 3.01
147 148 2.226437 GCATGTCATCAAAACGGTGACT 59.774 45.455 6.99 0.00 42.03 3.41
148 149 2.584791 GCATGTCATCAAAACGGTGAC 58.415 47.619 0.00 0.00 41.90 3.67
149 150 1.196581 CGCATGTCATCAAAACGGTGA 59.803 47.619 0.00 0.00 0.00 4.02
150 151 1.605500 CGCATGTCATCAAAACGGTG 58.394 50.000 0.00 0.00 0.00 4.94
151 152 0.521291 CCGCATGTCATCAAAACGGT 59.479 50.000 0.00 0.00 34.75 4.83
152 153 0.521291 ACCGCATGTCATCAAAACGG 59.479 50.000 0.00 0.00 40.57 4.44
153 154 1.605500 CACCGCATGTCATCAAAACG 58.394 50.000 0.00 0.00 0.00 3.60
154 155 1.339711 GCACCGCATGTCATCAAAAC 58.660 50.000 0.00 0.00 0.00 2.43
155 156 0.243365 GGCACCGCATGTCATCAAAA 59.757 50.000 0.00 0.00 31.05 2.44
156 157 1.594194 GGGCACCGCATGTCATCAAA 61.594 55.000 0.00 0.00 40.86 2.69
157 158 2.045708 GGGCACCGCATGTCATCAA 61.046 57.895 0.00 0.00 40.86 2.57
158 159 2.438254 GGGCACCGCATGTCATCA 60.438 61.111 0.00 0.00 40.86 3.07
184 185 3.812019 CTCTCGACGTCCCGGTGG 61.812 72.222 10.58 0.00 0.00 4.61
185 186 2.745100 TCTCTCGACGTCCCGGTG 60.745 66.667 10.58 1.77 0.00 4.94
186 187 2.436292 CTCTCTCGACGTCCCGGT 60.436 66.667 10.58 0.00 0.00 5.28
187 188 3.878519 GCTCTCTCGACGTCCCGG 61.879 72.222 10.58 0.00 0.00 5.73
188 189 3.878519 GGCTCTCTCGACGTCCCG 61.879 72.222 10.58 0.00 0.00 5.14
189 190 2.750637 TGGCTCTCTCGACGTCCC 60.751 66.667 10.58 3.80 0.00 4.46
190 191 2.795297 CTGGCTCTCTCGACGTCC 59.205 66.667 10.58 0.00 0.00 4.79
191 192 2.101380 GCTGGCTCTCTCGACGTC 59.899 66.667 5.18 5.18 0.00 4.34
192 193 2.673341 TGCTGGCTCTCTCGACGT 60.673 61.111 0.00 0.00 0.00 4.34
193 194 1.927608 TTCTGCTGGCTCTCTCGACG 61.928 60.000 0.00 0.00 0.00 5.12
194 195 0.457681 GTTCTGCTGGCTCTCTCGAC 60.458 60.000 0.00 0.00 0.00 4.20
195 196 0.895559 TGTTCTGCTGGCTCTCTCGA 60.896 55.000 0.00 0.00 0.00 4.04
196 197 0.037882 TTGTTCTGCTGGCTCTCTCG 60.038 55.000 0.00 0.00 0.00 4.04
197 198 2.075338 CTTTGTTCTGCTGGCTCTCTC 58.925 52.381 0.00 0.00 0.00 3.20
198 199 1.271271 CCTTTGTTCTGCTGGCTCTCT 60.271 52.381 0.00 0.00 0.00 3.10
199 200 1.163554 CCTTTGTTCTGCTGGCTCTC 58.836 55.000 0.00 0.00 0.00 3.20
200 201 0.892814 GCCTTTGTTCTGCTGGCTCT 60.893 55.000 0.00 0.00 40.36 4.09
201 202 1.583477 GCCTTTGTTCTGCTGGCTC 59.417 57.895 0.00 0.00 40.36 4.70
202 203 2.263741 CGCCTTTGTTCTGCTGGCT 61.264 57.895 0.00 0.00 41.25 4.75
203 204 1.795170 TTCGCCTTTGTTCTGCTGGC 61.795 55.000 0.00 0.00 40.14 4.85
204 205 0.040067 GTTCGCCTTTGTTCTGCTGG 60.040 55.000 0.00 0.00 0.00 4.85
205 206 0.040067 GGTTCGCCTTTGTTCTGCTG 60.040 55.000 0.00 0.00 0.00 4.41
206 207 2.331265 GGTTCGCCTTTGTTCTGCT 58.669 52.632 0.00 0.00 0.00 4.24
207 208 4.944249 GGTTCGCCTTTGTTCTGC 57.056 55.556 0.00 0.00 0.00 4.26
217 218 0.179097 GTCAGATCTGGAGGTTCGCC 60.179 60.000 22.42 0.00 37.60 5.54
218 219 0.532573 TGTCAGATCTGGAGGTTCGC 59.467 55.000 22.42 4.24 0.00 4.70
219 220 1.546029 TGTGTCAGATCTGGAGGTTCG 59.454 52.381 22.42 0.00 0.00 3.95
220 221 3.685139 TTGTGTCAGATCTGGAGGTTC 57.315 47.619 22.42 8.22 0.00 3.62
221 222 5.026121 TCTATTGTGTCAGATCTGGAGGTT 58.974 41.667 22.42 6.56 0.00 3.50
222 223 4.614475 TCTATTGTGTCAGATCTGGAGGT 58.386 43.478 22.42 7.10 0.00 3.85
223 224 4.501229 GCTCTATTGTGTCAGATCTGGAGG 60.501 50.000 22.42 0.00 0.00 4.30
224 225 4.099113 TGCTCTATTGTGTCAGATCTGGAG 59.901 45.833 22.42 17.36 0.00 3.86
225 226 4.026052 TGCTCTATTGTGTCAGATCTGGA 58.974 43.478 22.42 7.05 0.00 3.86
226 227 4.118410 GTGCTCTATTGTGTCAGATCTGG 58.882 47.826 22.42 4.04 0.00 3.86
227 228 4.118410 GGTGCTCTATTGTGTCAGATCTG 58.882 47.826 17.07 17.07 0.00 2.90
228 229 3.181482 CGGTGCTCTATTGTGTCAGATCT 60.181 47.826 0.00 0.00 0.00 2.75
229 230 3.119291 CGGTGCTCTATTGTGTCAGATC 58.881 50.000 0.00 0.00 0.00 2.75
230 231 2.497675 ACGGTGCTCTATTGTGTCAGAT 59.502 45.455 0.00 0.00 0.00 2.90
231 232 1.893137 ACGGTGCTCTATTGTGTCAGA 59.107 47.619 0.00 0.00 0.00 3.27
232 233 1.995484 CACGGTGCTCTATTGTGTCAG 59.005 52.381 0.00 0.00 0.00 3.51
233 234 1.939381 GCACGGTGCTCTATTGTGTCA 60.939 52.381 25.08 0.00 40.96 3.58
234 235 0.721718 GCACGGTGCTCTATTGTGTC 59.278 55.000 25.08 0.00 40.96 3.67
235 236 0.673644 GGCACGGTGCTCTATTGTGT 60.674 55.000 29.92 0.00 44.28 3.72
236 237 2.089854 GGCACGGTGCTCTATTGTG 58.910 57.895 29.92 0.00 44.28 3.33
237 238 4.617875 GGCACGGTGCTCTATTGT 57.382 55.556 29.92 0.00 44.28 2.71
250 251 2.281900 TTTGTACAGGGGCGGCAC 60.282 61.111 12.47 7.44 0.00 5.01
251 252 2.281900 GTTTGTACAGGGGCGGCA 60.282 61.111 12.47 0.00 0.00 5.69
252 253 3.428282 CGTTTGTACAGGGGCGGC 61.428 66.667 0.00 0.00 0.00 6.53
253 254 3.428282 GCGTTTGTACAGGGGCGG 61.428 66.667 0.00 0.00 0.00 6.13
254 255 2.182614 CTTGCGTTTGTACAGGGGCG 62.183 60.000 0.00 1.12 0.00 6.13
255 256 1.170290 ACTTGCGTTTGTACAGGGGC 61.170 55.000 0.00 1.39 0.00 5.80
256 257 0.591170 CACTTGCGTTTGTACAGGGG 59.409 55.000 0.00 0.00 0.00 4.79
257 258 0.040425 GCACTTGCGTTTGTACAGGG 60.040 55.000 0.00 0.00 0.00 4.45
258 259 3.454941 GCACTTGCGTTTGTACAGG 57.545 52.632 0.00 0.00 0.00 4.00
269 270 2.285834 GCGTGTATGTATGAGCACTTGC 60.286 50.000 0.00 0.00 42.49 4.01
270 271 2.929398 TGCGTGTATGTATGAGCACTTG 59.071 45.455 0.00 0.00 0.00 3.16
271 272 3.245518 TGCGTGTATGTATGAGCACTT 57.754 42.857 0.00 0.00 0.00 3.16
272 273 2.959507 TGCGTGTATGTATGAGCACT 57.040 45.000 0.00 0.00 0.00 4.40
273 274 4.048504 TGTATGCGTGTATGTATGAGCAC 58.951 43.478 0.00 0.00 37.44 4.40
274 275 4.314740 TGTATGCGTGTATGTATGAGCA 57.685 40.909 0.00 0.00 39.02 4.26
275 276 4.434725 GCATGTATGCGTGTATGTATGAGC 60.435 45.833 4.86 0.00 44.67 4.26
276 277 5.195503 GCATGTATGCGTGTATGTATGAG 57.804 43.478 4.86 0.00 44.67 2.90
290 291 2.807967 CGTTCATAGGGGTGCATGTATG 59.192 50.000 0.00 0.00 0.00 2.39
291 292 2.810400 GCGTTCATAGGGGTGCATGTAT 60.810 50.000 0.00 0.00 0.00 2.29
292 293 1.474320 GCGTTCATAGGGGTGCATGTA 60.474 52.381 0.00 0.00 0.00 2.29
293 294 0.748005 GCGTTCATAGGGGTGCATGT 60.748 55.000 0.00 0.00 0.00 3.21
294 295 0.747644 TGCGTTCATAGGGGTGCATG 60.748 55.000 0.00 0.00 0.00 4.06
295 296 0.748005 GTGCGTTCATAGGGGTGCAT 60.748 55.000 0.00 0.00 34.54 3.96
296 297 1.376683 GTGCGTTCATAGGGGTGCA 60.377 57.895 0.00 0.00 0.00 4.57
297 298 1.376683 TGTGCGTTCATAGGGGTGC 60.377 57.895 0.00 0.00 0.00 5.01
298 299 1.358725 CGTGTGCGTTCATAGGGGTG 61.359 60.000 0.00 0.00 0.00 4.61
299 300 1.079405 CGTGTGCGTTCATAGGGGT 60.079 57.895 0.00 0.00 0.00 4.95
300 301 2.461110 GCGTGTGCGTTCATAGGGG 61.461 63.158 0.00 0.00 40.81 4.79
301 302 3.089784 GCGTGTGCGTTCATAGGG 58.910 61.111 0.00 0.00 40.81 3.53
326 327 0.316524 GACGCCTACGATACGGTGAC 60.317 60.000 0.00 0.00 43.93 3.67
327 328 0.462581 AGACGCCTACGATACGGTGA 60.463 55.000 0.00 0.00 43.93 4.02
328 329 0.379669 AAGACGCCTACGATACGGTG 59.620 55.000 0.00 0.00 43.93 4.94
329 330 0.379669 CAAGACGCCTACGATACGGT 59.620 55.000 0.00 0.00 43.93 4.83
330 331 0.379669 ACAAGACGCCTACGATACGG 59.620 55.000 0.00 0.00 43.93 4.02
331 332 1.739618 GACAAGACGCCTACGATACG 58.260 55.000 0.00 0.00 43.93 3.06
332 333 1.063174 ACGACAAGACGCCTACGATAC 59.937 52.381 0.00 0.00 43.93 2.24
333 334 1.328680 GACGACAAGACGCCTACGATA 59.671 52.381 0.00 0.00 43.93 2.92
334 335 0.098376 GACGACAAGACGCCTACGAT 59.902 55.000 0.00 0.00 43.93 3.73
335 336 1.499056 GACGACAAGACGCCTACGA 59.501 57.895 0.00 0.00 43.93 3.43
337 338 0.792356 GTCGACGACAAGACGCCTAC 60.792 60.000 22.66 0.00 37.89 3.18
338 339 1.499056 GTCGACGACAAGACGCCTA 59.501 57.895 22.66 0.00 37.89 3.93
339 340 2.254651 GTCGACGACAAGACGCCT 59.745 61.111 22.66 0.00 37.89 5.52
343 344 1.000736 GTTCCCGTCGACGACAAGAC 61.001 60.000 37.65 22.61 43.02 3.01
344 345 1.283793 GTTCCCGTCGACGACAAGA 59.716 57.895 37.65 24.01 43.02 3.02
345 346 2.078914 CGTTCCCGTCGACGACAAG 61.079 63.158 37.65 20.95 41.53 3.16
346 347 2.051076 CGTTCCCGTCGACGACAA 60.051 61.111 37.65 25.24 41.53 3.18
347 348 3.279116 ACGTTCCCGTCGACGACA 61.279 61.111 37.65 21.01 46.28 4.35
359 360 3.921630 GCTTTTAGTGAGAGGAGACGTTC 59.078 47.826 0.00 0.00 0.00 3.95
360 361 3.612004 CGCTTTTAGTGAGAGGAGACGTT 60.612 47.826 0.00 0.00 0.00 3.99
361 362 2.095161 CGCTTTTAGTGAGAGGAGACGT 60.095 50.000 0.00 0.00 0.00 4.34
362 363 2.520979 CGCTTTTAGTGAGAGGAGACG 58.479 52.381 0.00 0.00 0.00 4.18
363 364 2.263945 GCGCTTTTAGTGAGAGGAGAC 58.736 52.381 0.00 0.00 0.00 3.36
364 365 1.893137 TGCGCTTTTAGTGAGAGGAGA 59.107 47.619 9.73 0.00 0.00 3.71
365 366 2.370281 TGCGCTTTTAGTGAGAGGAG 57.630 50.000 9.73 0.00 0.00 3.69
366 367 2.233676 TGATGCGCTTTTAGTGAGAGGA 59.766 45.455 9.73 0.00 0.00 3.71
367 368 2.349886 GTGATGCGCTTTTAGTGAGAGG 59.650 50.000 9.73 0.00 0.00 3.69
368 369 2.349886 GGTGATGCGCTTTTAGTGAGAG 59.650 50.000 9.73 0.00 0.00 3.20
369 370 2.346803 GGTGATGCGCTTTTAGTGAGA 58.653 47.619 9.73 0.00 0.00 3.27
370 371 1.061131 CGGTGATGCGCTTTTAGTGAG 59.939 52.381 9.73 0.00 0.00 3.51
371 372 1.075542 CGGTGATGCGCTTTTAGTGA 58.924 50.000 9.73 0.00 0.00 3.41
372 373 0.096976 CCGGTGATGCGCTTTTAGTG 59.903 55.000 9.73 0.00 0.00 2.74
373 374 0.036765 TCCGGTGATGCGCTTTTAGT 60.037 50.000 9.73 0.00 0.00 2.24
374 375 1.299541 ATCCGGTGATGCGCTTTTAG 58.700 50.000 9.73 0.00 0.00 1.85
375 376 2.605837 TATCCGGTGATGCGCTTTTA 57.394 45.000 9.73 0.00 32.18 1.52
376 377 1.967319 ATATCCGGTGATGCGCTTTT 58.033 45.000 9.73 0.00 32.18 2.27
377 378 1.873591 GAATATCCGGTGATGCGCTTT 59.126 47.619 9.73 0.00 32.18 3.51
378 379 1.512926 GAATATCCGGTGATGCGCTT 58.487 50.000 9.73 0.55 32.18 4.68
379 380 0.320771 GGAATATCCGGTGATGCGCT 60.321 55.000 9.73 0.00 32.18 5.92
380 381 0.320771 AGGAATATCCGGTGATGCGC 60.321 55.000 0.00 0.00 42.75 6.09
381 382 1.000843 TCAGGAATATCCGGTGATGCG 59.999 52.381 0.00 0.00 42.75 4.73
382 383 2.839486 TCAGGAATATCCGGTGATGC 57.161 50.000 0.00 0.00 42.75 3.91
383 384 7.744087 TTTATTTCAGGAATATCCGGTGATG 57.256 36.000 0.00 0.00 42.75 3.07
384 385 8.940397 AATTTATTTCAGGAATATCCGGTGAT 57.060 30.769 0.00 0.00 42.75 3.06
385 386 7.996066 TGAATTTATTTCAGGAATATCCGGTGA 59.004 33.333 0.00 0.00 39.44 4.02
386 387 8.165239 TGAATTTATTTCAGGAATATCCGGTG 57.835 34.615 0.00 0.00 39.44 4.94
406 407 9.618890 TCCTGATTCTCGAATTATTTCTGAATT 57.381 29.630 12.43 0.00 35.15 2.17
407 408 9.050601 GTCCTGATTCTCGAATTATTTCTGAAT 57.949 33.333 11.64 11.64 36.40 2.57
408 409 8.260818 AGTCCTGATTCTCGAATTATTTCTGAA 58.739 33.333 0.00 0.00 31.45 3.02
409 410 7.708322 CAGTCCTGATTCTCGAATTATTTCTGA 59.292 37.037 0.00 0.00 0.00 3.27
410 411 7.042187 CCAGTCCTGATTCTCGAATTATTTCTG 60.042 40.741 0.00 2.32 0.00 3.02
411 412 6.989169 CCAGTCCTGATTCTCGAATTATTTCT 59.011 38.462 0.00 0.00 0.00 2.52
412 413 6.986817 TCCAGTCCTGATTCTCGAATTATTTC 59.013 38.462 0.00 0.00 0.00 2.17
413 414 6.889198 TCCAGTCCTGATTCTCGAATTATTT 58.111 36.000 0.00 0.00 0.00 1.40
414 415 6.485830 TCCAGTCCTGATTCTCGAATTATT 57.514 37.500 0.00 0.00 0.00 1.40
415 416 6.284459 GTTCCAGTCCTGATTCTCGAATTAT 58.716 40.000 0.00 0.00 0.00 1.28
416 417 5.395324 GGTTCCAGTCCTGATTCTCGAATTA 60.395 44.000 0.00 0.00 0.00 1.40
417 418 4.508662 GTTCCAGTCCTGATTCTCGAATT 58.491 43.478 0.00 0.00 0.00 2.17
418 419 3.118592 GGTTCCAGTCCTGATTCTCGAAT 60.119 47.826 0.00 0.00 0.00 3.34
419 420 2.233922 GGTTCCAGTCCTGATTCTCGAA 59.766 50.000 0.00 0.00 0.00 3.71
420 421 1.825474 GGTTCCAGTCCTGATTCTCGA 59.175 52.381 0.00 0.00 0.00 4.04
421 422 1.827969 AGGTTCCAGTCCTGATTCTCG 59.172 52.381 0.00 0.00 33.62 4.04
429 430 1.203364 AGTCCATCAGGTTCCAGTCCT 60.203 52.381 0.00 0.00 35.89 3.85
430 431 1.065854 CAGTCCATCAGGTTCCAGTCC 60.066 57.143 0.00 0.00 35.89 3.85
431 432 1.065854 CCAGTCCATCAGGTTCCAGTC 60.066 57.143 0.00 0.00 35.89 3.51
432 433 0.987294 CCAGTCCATCAGGTTCCAGT 59.013 55.000 0.00 0.00 35.89 4.00
433 434 0.254178 CCCAGTCCATCAGGTTCCAG 59.746 60.000 0.00 0.00 35.89 3.86
434 435 0.178876 TCCCAGTCCATCAGGTTCCA 60.179 55.000 0.00 0.00 35.89 3.53
435 436 1.216990 ATCCCAGTCCATCAGGTTCC 58.783 55.000 0.00 0.00 35.89 3.62
436 437 2.104963 GGTATCCCAGTCCATCAGGTTC 59.895 54.545 0.00 0.00 35.89 3.62
437 438 2.127708 GGTATCCCAGTCCATCAGGTT 58.872 52.381 0.00 0.00 35.89 3.50
438 439 1.009552 TGGTATCCCAGTCCATCAGGT 59.990 52.381 0.00 0.00 35.17 4.00
439 440 1.417890 GTGGTATCCCAGTCCATCAGG 59.582 57.143 0.00 0.00 42.94 3.86
440 441 2.103771 CAGTGGTATCCCAGTCCATCAG 59.896 54.545 0.00 0.00 42.81 2.90
441 442 2.118679 CAGTGGTATCCCAGTCCATCA 58.881 52.381 0.00 0.00 42.81 3.07
442 443 2.103263 GACAGTGGTATCCCAGTCCATC 59.897 54.545 0.00 0.00 42.81 3.51
443 444 2.119495 GACAGTGGTATCCCAGTCCAT 58.881 52.381 0.00 0.00 42.81 3.41
444 445 1.568504 GACAGTGGTATCCCAGTCCA 58.431 55.000 0.00 0.00 42.81 4.02
445 446 0.460311 CGACAGTGGTATCCCAGTCC 59.540 60.000 0.00 0.00 42.81 3.85
446 447 0.179108 GCGACAGTGGTATCCCAGTC 60.179 60.000 0.00 0.00 42.81 3.51
447 448 0.614979 AGCGACAGTGGTATCCCAGT 60.615 55.000 0.00 0.00 45.74 4.00
448 449 0.103208 GAGCGACAGTGGTATCCCAG 59.897 60.000 0.00 0.00 42.94 4.45
449 450 0.324368 AGAGCGACAGTGGTATCCCA 60.324 55.000 0.00 0.00 38.87 4.37
450 451 1.688772 TAGAGCGACAGTGGTATCCC 58.311 55.000 0.00 0.00 0.00 3.85
451 452 2.223758 GGTTAGAGCGACAGTGGTATCC 60.224 54.545 0.00 0.00 0.00 2.59
452 453 2.426024 TGGTTAGAGCGACAGTGGTATC 59.574 50.000 0.00 0.00 0.00 2.24
453 454 2.453521 TGGTTAGAGCGACAGTGGTAT 58.546 47.619 0.00 0.00 0.00 2.73
454 455 1.913778 TGGTTAGAGCGACAGTGGTA 58.086 50.000 0.00 0.00 0.00 3.25
455 456 1.204941 GATGGTTAGAGCGACAGTGGT 59.795 52.381 0.00 0.00 0.00 4.16
456 457 1.471676 GGATGGTTAGAGCGACAGTGG 60.472 57.143 0.00 0.00 0.00 4.00
457 458 1.204704 TGGATGGTTAGAGCGACAGTG 59.795 52.381 0.00 0.00 0.00 3.66
458 459 1.557099 TGGATGGTTAGAGCGACAGT 58.443 50.000 0.00 0.00 0.00 3.55
459 460 2.271800 GTTGGATGGTTAGAGCGACAG 58.728 52.381 0.00 0.00 0.00 3.51
460 461 1.066430 GGTTGGATGGTTAGAGCGACA 60.066 52.381 0.00 0.00 0.00 4.35
461 462 1.066430 TGGTTGGATGGTTAGAGCGAC 60.066 52.381 0.00 0.00 0.00 5.19
462 463 1.066430 GTGGTTGGATGGTTAGAGCGA 60.066 52.381 0.00 0.00 0.00 4.93
463 464 1.338674 TGTGGTTGGATGGTTAGAGCG 60.339 52.381 0.00 0.00 0.00 5.03
464 465 2.489938 TGTGGTTGGATGGTTAGAGC 57.510 50.000 0.00 0.00 0.00 4.09
465 466 3.955471 ACATGTGGTTGGATGGTTAGAG 58.045 45.455 0.00 0.00 0.00 2.43
466 467 4.380843 AACATGTGGTTGGATGGTTAGA 57.619 40.909 0.00 0.00 38.60 2.10
480 481 5.469760 TCTGATTGTAGTGAACCAACATGTG 59.530 40.000 0.00 0.00 0.00 3.21
481 482 5.620206 TCTGATTGTAGTGAACCAACATGT 58.380 37.500 0.00 0.00 0.00 3.21
482 483 6.558771 TTCTGATTGTAGTGAACCAACATG 57.441 37.500 0.00 0.00 0.00 3.21
483 484 8.862325 TTATTCTGATTGTAGTGAACCAACAT 57.138 30.769 0.00 0.00 0.00 2.71
484 485 8.684386 TTTATTCTGATTGTAGTGAACCAACA 57.316 30.769 0.00 0.00 0.00 3.33
487 488 9.513906 TCAATTTATTCTGATTGTAGTGAACCA 57.486 29.630 0.00 0.00 35.35 3.67
488 489 9.774742 GTCAATTTATTCTGATTGTAGTGAACC 57.225 33.333 0.00 0.00 35.35 3.62
489 490 9.478019 CGTCAATTTATTCTGATTGTAGTGAAC 57.522 33.333 0.00 0.00 35.35 3.18
490 491 8.175069 GCGTCAATTTATTCTGATTGTAGTGAA 58.825 33.333 0.00 0.00 35.35 3.18
491 492 7.201609 GGCGTCAATTTATTCTGATTGTAGTGA 60.202 37.037 0.00 0.00 35.35 3.41
492 493 6.907212 GGCGTCAATTTATTCTGATTGTAGTG 59.093 38.462 0.00 0.00 35.35 2.74
493 494 6.038271 GGGCGTCAATTTATTCTGATTGTAGT 59.962 38.462 0.00 0.00 35.35 2.73
494 495 6.038161 TGGGCGTCAATTTATTCTGATTGTAG 59.962 38.462 0.00 0.00 35.35 2.74
495 496 5.883115 TGGGCGTCAATTTATTCTGATTGTA 59.117 36.000 0.00 0.00 35.35 2.41
496 497 4.704540 TGGGCGTCAATTTATTCTGATTGT 59.295 37.500 0.00 0.00 35.35 2.71
497 498 5.247507 TGGGCGTCAATTTATTCTGATTG 57.752 39.130 0.00 0.00 35.18 2.67
498 499 5.418840 ACTTGGGCGTCAATTTATTCTGATT 59.581 36.000 0.00 0.00 34.45 2.57
499 500 4.949856 ACTTGGGCGTCAATTTATTCTGAT 59.050 37.500 0.00 0.00 34.45 2.90
500 501 4.331968 ACTTGGGCGTCAATTTATTCTGA 58.668 39.130 0.00 0.00 34.45 3.27
501 502 4.438744 GGACTTGGGCGTCAATTTATTCTG 60.439 45.833 0.00 0.00 35.63 3.02
502 503 3.694566 GGACTTGGGCGTCAATTTATTCT 59.305 43.478 0.00 0.00 35.63 2.40
503 504 3.442273 TGGACTTGGGCGTCAATTTATTC 59.558 43.478 0.00 0.00 35.63 1.75
504 505 3.192633 GTGGACTTGGGCGTCAATTTATT 59.807 43.478 0.00 0.00 35.63 1.40
505 506 2.752903 GTGGACTTGGGCGTCAATTTAT 59.247 45.455 0.00 0.00 35.63 1.40
506 507 2.156098 GTGGACTTGGGCGTCAATTTA 58.844 47.619 0.00 0.00 35.63 1.40
507 508 0.958822 GTGGACTTGGGCGTCAATTT 59.041 50.000 0.00 0.00 35.63 1.82
508 509 1.234615 CGTGGACTTGGGCGTCAATT 61.235 55.000 0.00 0.00 35.63 2.32
509 510 1.671054 CGTGGACTTGGGCGTCAAT 60.671 57.895 0.00 0.00 35.63 2.57
510 511 2.280524 CGTGGACTTGGGCGTCAA 60.281 61.111 0.00 0.00 35.63 3.18
511 512 3.228017 TCGTGGACTTGGGCGTCA 61.228 61.111 0.00 0.00 35.63 4.35
512 513 1.870055 TAGTCGTGGACTTGGGCGTC 61.870 60.000 3.32 0.00 40.28 5.19
513 514 1.874345 CTAGTCGTGGACTTGGGCGT 61.874 60.000 3.32 0.00 40.28 5.68
514 515 1.153823 CTAGTCGTGGACTTGGGCG 60.154 63.158 3.32 0.00 40.28 6.13
515 516 0.173708 CTCTAGTCGTGGACTTGGGC 59.826 60.000 3.32 0.00 40.28 5.36
516 517 0.818296 CCTCTAGTCGTGGACTTGGG 59.182 60.000 3.32 1.98 40.28 4.12
517 518 1.746220 CTCCTCTAGTCGTGGACTTGG 59.254 57.143 3.32 5.03 40.28 3.61
518 519 1.746220 CCTCCTCTAGTCGTGGACTTG 59.254 57.143 3.32 2.35 40.28 3.16
519 520 1.956159 GCCTCCTCTAGTCGTGGACTT 60.956 57.143 3.32 0.00 40.28 3.01
520 521 0.394625 GCCTCCTCTAGTCGTGGACT 60.395 60.000 3.52 3.52 45.54 3.85
521 522 0.680280 TGCCTCCTCTAGTCGTGGAC 60.680 60.000 0.00 0.00 32.17 4.02
522 523 0.680280 GTGCCTCCTCTAGTCGTGGA 60.680 60.000 0.00 0.00 34.31 4.02
523 524 1.810532 GTGCCTCCTCTAGTCGTGG 59.189 63.158 0.00 0.00 0.00 4.94
524 525 1.429825 CGTGCCTCCTCTAGTCGTG 59.570 63.158 0.00 0.00 0.00 4.35
525 526 1.749638 CCGTGCCTCCTCTAGTCGT 60.750 63.158 0.00 0.00 0.00 4.34
526 527 3.111939 CCGTGCCTCCTCTAGTCG 58.888 66.667 0.00 0.00 0.00 4.18
527 528 2.809010 GCCGTGCCTCCTCTAGTC 59.191 66.667 0.00 0.00 0.00 2.59
528 529 3.141488 CGCCGTGCCTCCTCTAGT 61.141 66.667 0.00 0.00 0.00 2.57
529 530 1.739338 ATTCGCCGTGCCTCCTCTAG 61.739 60.000 0.00 0.00 0.00 2.43
530 531 1.327690 AATTCGCCGTGCCTCCTCTA 61.328 55.000 0.00 0.00 0.00 2.43
531 532 2.579684 GAATTCGCCGTGCCTCCTCT 62.580 60.000 0.00 0.00 0.00 3.69
532 533 2.125106 AATTCGCCGTGCCTCCTC 60.125 61.111 0.00 0.00 0.00 3.71
533 534 2.125106 GAATTCGCCGTGCCTCCT 60.125 61.111 0.00 0.00 0.00 3.69
534 535 1.706287 GAAGAATTCGCCGTGCCTCC 61.706 60.000 0.00 0.00 34.17 4.30
535 536 1.716172 GAAGAATTCGCCGTGCCTC 59.284 57.895 0.00 0.00 34.17 4.70
536 537 3.890674 GAAGAATTCGCCGTGCCT 58.109 55.556 0.00 0.00 34.17 4.75
546 547 9.512588 CTGGTAGCATATAATTGGAGAAGAATT 57.487 33.333 0.00 0.00 0.00 2.17
547 548 8.664079 ACTGGTAGCATATAATTGGAGAAGAAT 58.336 33.333 0.00 0.00 0.00 2.40
548 549 8.034313 ACTGGTAGCATATAATTGGAGAAGAA 57.966 34.615 0.00 0.00 0.00 2.52
549 550 7.510685 AGACTGGTAGCATATAATTGGAGAAGA 59.489 37.037 0.00 0.00 0.00 2.87
550 551 7.601886 CAGACTGGTAGCATATAATTGGAGAAG 59.398 40.741 0.00 0.00 0.00 2.85
551 552 7.445121 CAGACTGGTAGCATATAATTGGAGAA 58.555 38.462 0.00 0.00 0.00 2.87
552 553 6.014242 CCAGACTGGTAGCATATAATTGGAGA 60.014 42.308 13.84 0.00 31.35 3.71
553 554 6.169094 CCAGACTGGTAGCATATAATTGGAG 58.831 44.000 13.84 0.00 31.35 3.86
554 555 6.114187 CCAGACTGGTAGCATATAATTGGA 57.886 41.667 13.84 0.00 31.35 3.53
568 569 8.021570 AGTTAGCAACTAGTATACCAGACTGGT 61.022 40.741 29.50 29.50 46.72 4.00
569 570 6.321690 AGTTAGCAACTAGTATACCAGACTGG 59.678 42.308 20.45 20.45 41.25 4.00
570 571 7.148052 ACAGTTAGCAACTAGTATACCAGACTG 60.148 40.741 5.25 9.07 40.46 3.51
571 572 6.890814 ACAGTTAGCAACTAGTATACCAGACT 59.109 38.462 5.25 2.68 40.46 3.24
572 573 7.098074 ACAGTTAGCAACTAGTATACCAGAC 57.902 40.000 5.25 0.00 40.46 3.51
573 574 8.991783 ATACAGTTAGCAACTAGTATACCAGA 57.008 34.615 5.25 0.00 40.46 3.86
579 580 9.517609 CTCGAAAATACAGTTAGCAACTAGTAT 57.482 33.333 0.00 8.63 40.46 2.12
580 581 8.733458 TCTCGAAAATACAGTTAGCAACTAGTA 58.267 33.333 0.00 7.21 40.46 1.82
581 582 7.600065 TCTCGAAAATACAGTTAGCAACTAGT 58.400 34.615 0.00 0.00 40.46 2.57
582 583 7.755822 ACTCTCGAAAATACAGTTAGCAACTAG 59.244 37.037 1.95 0.00 40.46 2.57
583 584 7.600065 ACTCTCGAAAATACAGTTAGCAACTA 58.400 34.615 1.95 0.00 40.46 2.24
584 585 6.456501 ACTCTCGAAAATACAGTTAGCAACT 58.543 36.000 0.00 0.00 44.06 3.16
585 586 6.707599 ACTCTCGAAAATACAGTTAGCAAC 57.292 37.500 0.00 0.00 0.00 4.17
586 587 7.724305 AAACTCTCGAAAATACAGTTAGCAA 57.276 32.000 0.00 0.00 0.00 3.91
587 588 7.439955 TGAAAACTCTCGAAAATACAGTTAGCA 59.560 33.333 0.00 0.00 0.00 3.49
588 589 7.793902 TGAAAACTCTCGAAAATACAGTTAGC 58.206 34.615 0.00 0.00 0.00 3.09
593 594 9.250986 CGTATTTGAAAACTCTCGAAAATACAG 57.749 33.333 18.15 11.03 39.06 2.74
594 595 8.225107 CCGTATTTGAAAACTCTCGAAAATACA 58.775 33.333 18.15 0.28 39.06 2.29
602 603 4.624024 TGTAGCCGTATTTGAAAACTCTCG 59.376 41.667 0.00 0.00 0.00 4.04
648 649 3.556213 CCGTCCCTGTTGATGTAAGTTGA 60.556 47.826 0.00 0.00 0.00 3.18
670 671 1.267261 CGAGGTCGACCATATCTGGAC 59.733 57.143 35.00 13.27 46.14 4.02
704 724 1.337447 TGAGGAAAACGACGGTGATCC 60.337 52.381 9.41 9.41 33.85 3.36
709 729 1.735360 TCGTGAGGAAAACGACGGT 59.265 52.632 0.00 0.00 44.58 4.83
860 895 1.152756 GTTGGGTGGGTGAAGCTGT 60.153 57.895 0.00 0.00 0.00 4.40
862 897 1.352622 TGAGTTGGGTGGGTGAAGCT 61.353 55.000 0.00 0.00 0.00 3.74
889 941 1.077644 CGGGGAGAGGAGAACGAGA 60.078 63.158 0.00 0.00 0.00 4.04
893 945 2.579738 GTGCGGGGAGAGGAGAAC 59.420 66.667 0.00 0.00 0.00 3.01
894 946 2.683933 GGTGCGGGGAGAGGAGAA 60.684 66.667 0.00 0.00 0.00 2.87
895 947 3.539593 TTGGTGCGGGGAGAGGAGA 62.540 63.158 0.00 0.00 0.00 3.71
896 948 3.003173 TTGGTGCGGGGAGAGGAG 61.003 66.667 0.00 0.00 0.00 3.69
897 949 3.003173 CTTGGTGCGGGGAGAGGA 61.003 66.667 0.00 0.00 0.00 3.71
898 950 3.003173 TCTTGGTGCGGGGAGAGG 61.003 66.667 0.00 0.00 0.00 3.69
899 951 2.581354 CTCTTGGTGCGGGGAGAG 59.419 66.667 0.00 0.00 0.00 3.20
900 952 3.706373 GCTCTTGGTGCGGGGAGA 61.706 66.667 0.00 0.00 0.00 3.71
906 980 1.909141 CTCTTGCTGCTCTTGGTGCG 61.909 60.000 0.00 0.00 0.00 5.34
914 988 2.876219 GCTTGCCTCTTGCTGCTC 59.124 61.111 0.00 0.00 42.00 4.26
924 1001 4.912395 TTTGGGGTGCGCTTGCCT 62.912 61.111 9.73 0.00 38.03 4.75
925 1002 4.362476 CTTTGGGGTGCGCTTGCC 62.362 66.667 9.73 8.39 38.03 4.52
937 1014 2.008329 CTGAGCAGAGCTTAGCTTTGG 58.992 52.381 23.14 10.78 40.46 3.28
964 1042 5.617528 TTGTGTGTAGGTTACTTTGGAGA 57.382 39.130 0.00 0.00 0.00 3.71
986 1070 3.245087 TGGCGCCATGGTATATTGGTATT 60.245 43.478 29.03 0.00 35.34 1.89
1105 1200 2.428569 GAAGACGTCGCTGTCGCA 60.429 61.111 10.46 0.00 43.70 5.10
1141 1236 0.382515 CACTCCTCGCTACAGTAGGC 59.617 60.000 9.74 1.35 0.00 3.93
1303 1406 1.600485 TCGAACAAAACTTTCCTCGGC 59.400 47.619 0.00 0.00 0.00 5.54
1321 1424 6.209361 TCAGAATTCCGATCTTGTCTATTCG 58.791 40.000 0.65 0.00 0.00 3.34
1326 1429 5.667539 TCTTCAGAATTCCGATCTTGTCT 57.332 39.130 0.65 0.00 0.00 3.41
1336 1439 7.380602 CACAGATGTTGTTTTCTTCAGAATTCC 59.619 37.037 0.65 0.00 38.16 3.01
1362 1465 0.249657 GACGGAGACATCAGATGCCC 60.250 60.000 10.59 8.40 0.00 5.36
1366 1504 2.582052 GGAGAGACGGAGACATCAGAT 58.418 52.381 0.00 0.00 0.00 2.90
1404 1542 0.745845 CCTGATGCTTCCTCCGGTTG 60.746 60.000 0.00 0.00 0.00 3.77
1405 1543 1.201429 ACCTGATGCTTCCTCCGGTT 61.201 55.000 0.00 0.00 26.96 4.44
1411 1549 1.001641 GTGCCACCTGATGCTTCCT 60.002 57.895 0.00 0.00 0.00 3.36
1415 1553 1.376424 CTTCGTGCCACCTGATGCT 60.376 57.895 0.00 0.00 0.00 3.79
1419 1557 0.108186 CTATGCTTCGTGCCACCTGA 60.108 55.000 0.00 0.00 42.00 3.86
1423 1561 0.447801 CAACCTATGCTTCGTGCCAC 59.552 55.000 1.30 0.00 42.00 5.01
1424 1562 0.036164 ACAACCTATGCTTCGTGCCA 59.964 50.000 1.30 0.00 42.00 4.92
1425 1563 1.165270 AACAACCTATGCTTCGTGCC 58.835 50.000 1.30 0.00 42.00 5.01
1426 1564 3.259064 TCTAACAACCTATGCTTCGTGC 58.741 45.455 0.00 0.00 43.25 5.34
1427 1565 4.330074 CCTTCTAACAACCTATGCTTCGTG 59.670 45.833 0.00 0.00 0.00 4.35
1428 1566 4.504858 CCTTCTAACAACCTATGCTTCGT 58.495 43.478 0.00 0.00 0.00 3.85
1429 1567 3.871594 CCCTTCTAACAACCTATGCTTCG 59.128 47.826 0.00 0.00 0.00 3.79
1430 1568 5.099042 TCCCTTCTAACAACCTATGCTTC 57.901 43.478 0.00 0.00 0.00 3.86
1431 1569 4.783227 TCTCCCTTCTAACAACCTATGCTT 59.217 41.667 0.00 0.00 0.00 3.91
1432 1570 4.362677 TCTCCCTTCTAACAACCTATGCT 58.637 43.478 0.00 0.00 0.00 3.79
1433 1571 4.406003 TCTCTCCCTTCTAACAACCTATGC 59.594 45.833 0.00 0.00 0.00 3.14
1434 1572 5.894393 TCTCTCTCCCTTCTAACAACCTATG 59.106 44.000 0.00 0.00 0.00 2.23
1435 1573 6.093617 TCTCTCTCCCTTCTAACAACCTAT 57.906 41.667 0.00 0.00 0.00 2.57
1436 1574 5.531753 TCTCTCTCCCTTCTAACAACCTA 57.468 43.478 0.00 0.00 0.00 3.08
1439 1577 4.773149 TCCTTCTCTCTCCCTTCTAACAAC 59.227 45.833 0.00 0.00 0.00 3.32
1476 1615 6.114187 TCGAGGCTCAATAATACATCCAAT 57.886 37.500 15.95 0.00 0.00 3.16
1477 1616 5.511373 CCTCGAGGCTCAATAATACATCCAA 60.511 44.000 20.67 0.00 0.00 3.53
1514 1660 6.064717 GCCCTCCAAGTCTTGTATTCAATAT 58.935 40.000 11.61 0.00 32.82 1.28
1515 1661 5.045213 TGCCCTCCAAGTCTTGTATTCAATA 60.045 40.000 11.61 0.00 32.82 1.90
1516 1662 4.263905 TGCCCTCCAAGTCTTGTATTCAAT 60.264 41.667 11.61 0.00 32.82 2.57
1517 1663 3.073798 TGCCCTCCAAGTCTTGTATTCAA 59.926 43.478 11.61 0.00 0.00 2.69
1521 1667 3.356529 CTTGCCCTCCAAGTCTTGTAT 57.643 47.619 11.61 0.00 44.74 2.29
1549 1695 4.507691 CCGTCTCCTACCTTATCTCCAGAT 60.508 50.000 0.00 0.00 38.51 2.90
1550 1696 3.181442 CCGTCTCCTACCTTATCTCCAGA 60.181 52.174 0.00 0.00 0.00 3.86
1597 1743 8.033038 TGTTAGAGATATATTTGGGATACGTGC 58.967 37.037 0.00 0.00 37.60 5.34
1696 1843 3.458163 GGATGTCAGCCCGTCGGA 61.458 66.667 14.39 0.00 0.00 4.55
1820 1967 1.369448 GCTCTCGGCTATGTCGACG 60.369 63.158 11.62 0.00 33.73 5.12
1860 2007 2.031420 CGTTCTTCACACGACTACCTCA 60.031 50.000 0.00 0.00 40.20 3.86
1873 2020 2.149803 ATCGACCACGGCGTTCTTCA 62.150 55.000 11.19 0.00 40.21 3.02
1901 2048 2.754658 CTCGACACCGGCTACCCT 60.755 66.667 0.00 0.00 36.24 4.34
1971 2118 2.035449 CACCACTTCTTCGACACCACTA 59.965 50.000 0.00 0.00 0.00 2.74
2115 2262 2.935955 CGGCGCTTCGTCAACTTT 59.064 55.556 7.64 0.00 0.00 2.66
2171 2318 4.622456 CAACACCGTTGCGTGCCC 62.622 66.667 0.00 0.00 37.25 5.36
2248 2395 0.612229 CTTCTCTGCTGGCCTCTTCA 59.388 55.000 3.32 0.00 0.00 3.02
2250 2397 0.546267 TCCTTCTCTGCTGGCCTCTT 60.546 55.000 3.32 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.