Multiple sequence alignment - TraesCS2B01G475500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G475500 chr2B 100.000 2415 0 0 1 2415 672667582 672669996 0.000000e+00 4460
1 TraesCS2B01G475500 chr2B 95.599 568 19 6 129 693 321289681 321289117 0.000000e+00 905
2 TraesCS2B01G475500 chr2B 82.534 1105 88 37 955 1980 672797099 672796021 0.000000e+00 874
3 TraesCS2B01G475500 chr2B 93.497 569 27 7 129 693 4801981 4802543 0.000000e+00 837
4 TraesCS2B01G475500 chr2B 85.466 633 50 21 963 1584 672776280 672775679 2.640000e-174 621
5 TraesCS2B01G475500 chr2B 81.175 834 68 45 962 1713 672646419 672647245 2.670000e-164 588
6 TraesCS2B01G475500 chr2B 86.312 526 42 16 1061 1581 672860562 672861062 1.630000e-151 545
7 TraesCS2B01G475500 chr2B 90.201 398 37 2 1638 2034 672861080 672861476 3.560000e-143 518
8 TraesCS2B01G475500 chr2B 90.127 395 37 2 1638 2031 672775664 672775271 1.660000e-141 512
9 TraesCS2B01G475500 chr2B 95.098 306 15 0 651 956 679069447 679069752 1.300000e-132 483
10 TraesCS2B01G475500 chr2B 93.130 262 18 0 2154 2415 374289416 374289677 3.770000e-103 385
11 TraesCS2B01G475500 chr2B 85.294 306 43 2 1087 1390 672530832 672531137 5.010000e-82 315
12 TraesCS2B01G475500 chr2B 86.667 105 11 3 2042 2145 361444746 361444644 1.960000e-21 113
13 TraesCS2B01G475500 chr4B 95.423 568 19 6 129 693 547276018 547276581 0.000000e+00 898
14 TraesCS2B01G475500 chr4B 87.978 549 47 15 153 693 630394060 630393523 4.380000e-177 630
15 TraesCS2B01G475500 chr4B 96.040 303 12 0 654 956 581908713 581908411 6.000000e-136 494
16 TraesCS2B01G475500 chr4B 93.130 262 17 1 2154 2415 392946334 392946074 1.350000e-102 383
17 TraesCS2B01G475500 chr4B 80.000 145 20 7 2007 2144 71346343 71346201 5.490000e-17 99
18 TraesCS2B01G475500 chr7B 95.246 568 20 6 129 693 351004870 351005433 0.000000e+00 893
19 TraesCS2B01G475500 chr7B 95.471 552 20 3 129 679 105905676 105905129 0.000000e+00 876
20 TraesCS2B01G475500 chr7B 94.771 306 16 0 651 956 351005331 351005636 6.040000e-131 477
21 TraesCS2B01G475500 chr1B 93.322 569 27 8 129 693 3085399 3084838 0.000000e+00 830
22 TraesCS2B01G475500 chr1B 93.130 262 18 0 2154 2415 400978245 400977984 3.770000e-103 385
23 TraesCS2B01G475500 chr1B 91.606 274 23 0 2142 2415 321211488 321211761 1.750000e-101 379
24 TraesCS2B01G475500 chr1B 97.037 135 3 1 1 134 7059114 7059248 2.420000e-55 226
25 TraesCS2B01G475500 chr1B 97.037 135 3 1 1 134 305231978 305232112 2.420000e-55 226
26 TraesCS2B01G475500 chr1B 97.037 135 3 1 1 134 638325061 638325195 2.420000e-55 226
27 TraesCS2B01G475500 chr7D 89.792 529 44 9 153 677 27963567 27963045 0.000000e+00 669
28 TraesCS2B01G475500 chr1D 87.273 550 48 19 153 693 27465559 27465023 2.050000e-170 608
29 TraesCS2B01G475500 chr1D 93.536 263 17 0 2153 2415 208933111 208933373 2.250000e-105 392
30 TraesCS2B01G475500 chr1D 85.246 122 12 5 2033 2151 361207874 361207756 1.170000e-23 121
31 TraesCS2B01G475500 chr2A 91.572 439 25 4 957 1389 703345843 703346275 1.600000e-166 595
32 TraesCS2B01G475500 chr2A 86.067 567 60 15 1411 1971 703123491 703124044 2.070000e-165 592
33 TraesCS2B01G475500 chr2A 84.345 626 48 23 1055 1641 703337542 703338156 3.480000e-158 568
34 TraesCS2B01G475500 chr2A 86.667 495 39 14 962 1439 703291103 703291587 7.650000e-145 523
35 TraesCS2B01G475500 chr2A 88.998 409 38 5 955 1358 703207483 703207889 1.290000e-137 499
36 TraesCS2B01G475500 chr2A 94.754 305 15 1 654 957 529637290 529636986 7.810000e-130 473
37 TraesCS2B01G475500 chr2A 81.152 573 64 22 1445 2005 703291646 703292186 1.030000e-113 420
38 TraesCS2B01G475500 chr2A 86.441 118 12 4 2029 2145 607821080 607820966 2.520000e-25 126
39 TraesCS2B01G475500 chr2D 87.273 495 50 8 955 1439 562684865 562685356 9.760000e-154 553
40 TraesCS2B01G475500 chr2D 81.997 711 73 32 955 1621 562753951 562754650 9.760000e-154 553
41 TraesCS2B01G475500 chr2D 84.068 590 60 16 1411 1971 562588301 562588885 2.730000e-149 538
42 TraesCS2B01G475500 chr2D 89.231 390 36 3 1055 1439 562735069 562735457 1.300000e-132 483
43 TraesCS2B01G475500 chr2D 78.857 350 46 19 1522 1851 562449718 562450059 6.760000e-51 211
44 TraesCS2B01G475500 chr2D 90.909 110 10 0 1411 1520 562808259 562808368 5.380000e-32 148
45 TraesCS2B01G475500 chr2D 86.957 115 10 4 2033 2144 311694889 311695001 9.070000e-25 124
46 TraesCS2B01G475500 chr2D 95.652 69 3 0 1639 1707 562808468 562808536 7.060000e-21 111
47 TraesCS2B01G475500 chr5B 96.382 304 10 1 654 957 322875666 322875364 1.290000e-137 499
48 TraesCS2B01G475500 chr5B 95.946 296 10 2 668 962 347990152 347989858 1.680000e-131 479
49 TraesCS2B01G475500 chr5B 97.037 135 3 1 1 134 162880643 162880509 2.420000e-55 226
50 TraesCS2B01G475500 chr5B 87.273 110 9 5 2033 2140 406538047 406537941 1.170000e-23 121
51 TraesCS2B01G475500 chrUn 96.040 303 12 0 654 956 441948716 441948414 6.000000e-136 494
52 TraesCS2B01G475500 chrUn 95.380 303 13 1 654 956 38547692 38547391 4.670000e-132 481
53 TraesCS2B01G475500 chrUn 95.380 303 13 1 654 956 367518704 367518403 4.670000e-132 481
54 TraesCS2B01G475500 chrUn 97.037 135 3 1 1 134 7910194 7910328 2.420000e-55 226
55 TraesCS2B01G475500 chrUn 97.037 135 3 1 1 134 260673875 260674009 2.420000e-55 226
56 TraesCS2B01G475500 chr4D 81.579 570 63 25 153 694 321938153 321937598 1.330000e-117 433
57 TraesCS2B01G475500 chr4D 93.536 263 16 1 2154 2415 331394659 331394921 8.100000e-105 390
58 TraesCS2B01G475500 chr4D 93.511 262 17 0 2154 2415 332247456 332247195 8.100000e-105 390
59 TraesCS2B01G475500 chr4D 94.118 255 15 0 2154 2408 332255780 332255526 2.910000e-104 388
60 TraesCS2B01G475500 chr6B 94.340 265 13 2 2152 2415 483851898 483852161 2.890000e-109 405
61 TraesCS2B01G475500 chr6B 83.471 121 14 6 2037 2155 568575418 568575302 9.130000e-20 108
62 TraesCS2B01G475500 chr6D 97.037 135 3 1 1 134 278665216 278665350 2.420000e-55 226
63 TraesCS2B01G475500 chr6D 85.593 118 9 7 2042 2154 445933192 445933306 1.520000e-22 117
64 TraesCS2B01G475500 chr3B 97.037 135 3 1 1 134 43749951 43749817 2.420000e-55 226
65 TraesCS2B01G475500 chr3B 97.037 135 3 1 1 134 59723323 59723189 2.420000e-55 226
66 TraesCS2B01G475500 chr6A 85.455 110 12 4 2033 2141 184388212 184388318 7.060000e-21 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G475500 chr2B 672667582 672669996 2414 False 4460.0 4460 100.0000 1 2415 1 chr2B.!!$F5 2414
1 TraesCS2B01G475500 chr2B 321289117 321289681 564 True 905.0 905 95.5990 129 693 1 chr2B.!!$R1 564
2 TraesCS2B01G475500 chr2B 672796021 672797099 1078 True 874.0 874 82.5340 955 1980 1 chr2B.!!$R3 1025
3 TraesCS2B01G475500 chr2B 4801981 4802543 562 False 837.0 837 93.4970 129 693 1 chr2B.!!$F1 564
4 TraesCS2B01G475500 chr2B 672646419 672647245 826 False 588.0 588 81.1750 962 1713 1 chr2B.!!$F4 751
5 TraesCS2B01G475500 chr2B 672775271 672776280 1009 True 566.5 621 87.7965 963 2031 2 chr2B.!!$R4 1068
6 TraesCS2B01G475500 chr2B 672860562 672861476 914 False 531.5 545 88.2565 1061 2034 2 chr2B.!!$F7 973
7 TraesCS2B01G475500 chr4B 547276018 547276581 563 False 898.0 898 95.4230 129 693 1 chr4B.!!$F1 564
8 TraesCS2B01G475500 chr4B 630393523 630394060 537 True 630.0 630 87.9780 153 693 1 chr4B.!!$R4 540
9 TraesCS2B01G475500 chr7B 105905129 105905676 547 True 876.0 876 95.4710 129 679 1 chr7B.!!$R1 550
10 TraesCS2B01G475500 chr7B 351004870 351005636 766 False 685.0 893 95.0085 129 956 2 chr7B.!!$F1 827
11 TraesCS2B01G475500 chr1B 3084838 3085399 561 True 830.0 830 93.3220 129 693 1 chr1B.!!$R1 564
12 TraesCS2B01G475500 chr7D 27963045 27963567 522 True 669.0 669 89.7920 153 677 1 chr7D.!!$R1 524
13 TraesCS2B01G475500 chr1D 27465023 27465559 536 True 608.0 608 87.2730 153 693 1 chr1D.!!$R1 540
14 TraesCS2B01G475500 chr2A 703123491 703124044 553 False 592.0 592 86.0670 1411 1971 1 chr2A.!!$F1 560
15 TraesCS2B01G475500 chr2A 703337542 703338156 614 False 568.0 568 84.3450 1055 1641 1 chr2A.!!$F3 586
16 TraesCS2B01G475500 chr2A 703291103 703292186 1083 False 471.5 523 83.9095 962 2005 2 chr2A.!!$F5 1043
17 TraesCS2B01G475500 chr2D 562753951 562754650 699 False 553.0 553 81.9970 955 1621 1 chr2D.!!$F6 666
18 TraesCS2B01G475500 chr2D 562588301 562588885 584 False 538.0 538 84.0680 1411 1971 1 chr2D.!!$F3 560
19 TraesCS2B01G475500 chr4D 321937598 321938153 555 True 433.0 433 81.5790 153 694 1 chr4D.!!$R1 541

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
683 712 0.037232 AGCTGGCCGAAGTACACTTC 60.037 55.0 11.35 11.35 46.63 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2245 2440 0.037447 GAGGCTCTTGAGCTTGGGTT 59.963 55.0 20.12 2.36 34.73 4.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.421530 CCATTATCCATTCGATCGTAGTTTT 57.578 36.000 15.94 0.55 31.92 2.43
25 26 7.510630 CCATTATCCATTCGATCGTAGTTTTC 58.489 38.462 15.94 0.00 31.92 2.29
26 27 7.170828 CCATTATCCATTCGATCGTAGTTTTCA 59.829 37.037 15.94 0.00 31.92 2.69
27 28 5.968387 ATCCATTCGATCGTAGTTTTCAC 57.032 39.130 15.94 0.00 0.00 3.18
28 29 4.178540 TCCATTCGATCGTAGTTTTCACC 58.821 43.478 15.94 0.00 0.00 4.02
29 30 3.308866 CCATTCGATCGTAGTTTTCACCC 59.691 47.826 15.94 0.00 0.00 4.61
30 31 3.947910 TTCGATCGTAGTTTTCACCCT 57.052 42.857 15.94 0.00 0.00 4.34
31 32 3.226346 TCGATCGTAGTTTTCACCCTG 57.774 47.619 15.94 0.00 0.00 4.45
32 33 2.094390 TCGATCGTAGTTTTCACCCTGG 60.094 50.000 15.94 0.00 0.00 4.45
33 34 2.629051 GATCGTAGTTTTCACCCTGGG 58.371 52.381 12.28 12.28 0.00 4.45
34 35 1.719529 TCGTAGTTTTCACCCTGGGA 58.280 50.000 22.23 0.00 0.00 4.37
35 36 2.262637 TCGTAGTTTTCACCCTGGGAT 58.737 47.619 22.23 0.04 0.00 3.85
36 37 2.027561 TCGTAGTTTTCACCCTGGGATG 60.028 50.000 22.23 13.99 0.00 3.51
37 38 2.027561 CGTAGTTTTCACCCTGGGATGA 60.028 50.000 22.23 16.15 0.00 2.92
38 39 2.887151 AGTTTTCACCCTGGGATGAG 57.113 50.000 22.23 6.32 0.00 2.90
39 40 1.177401 GTTTTCACCCTGGGATGAGC 58.823 55.000 22.23 9.52 0.00 4.26
40 41 0.776810 TTTTCACCCTGGGATGAGCA 59.223 50.000 22.23 7.34 0.00 4.26
41 42 0.329261 TTTCACCCTGGGATGAGCAG 59.671 55.000 22.23 0.03 0.00 4.24
42 43 1.565390 TTCACCCTGGGATGAGCAGG 61.565 60.000 22.23 0.00 35.94 4.85
43 44 1.997311 CACCCTGGGATGAGCAGGA 60.997 63.158 22.23 0.00 38.33 3.86
44 45 1.997874 ACCCTGGGATGAGCAGGAC 60.998 63.158 22.23 0.00 38.33 3.85
45 46 1.692042 CCCTGGGATGAGCAGGACT 60.692 63.158 7.01 0.00 38.33 3.85
46 47 1.694133 CCCTGGGATGAGCAGGACTC 61.694 65.000 7.01 0.00 46.45 3.36
47 48 0.690411 CCTGGGATGAGCAGGACTCT 60.690 60.000 0.00 0.00 46.41 3.24
48 49 1.202330 CTGGGATGAGCAGGACTCTT 58.798 55.000 0.00 0.00 46.41 2.85
49 50 1.138661 CTGGGATGAGCAGGACTCTTC 59.861 57.143 0.00 0.00 46.41 2.87
50 51 1.273495 TGGGATGAGCAGGACTCTTCT 60.273 52.381 8.06 0.00 46.41 2.85
51 52 1.138661 GGGATGAGCAGGACTCTTCTG 59.861 57.143 8.06 0.00 46.41 3.02
52 53 2.106566 GGATGAGCAGGACTCTTCTGA 58.893 52.381 8.06 0.00 46.41 3.27
53 54 2.101249 GGATGAGCAGGACTCTTCTGAG 59.899 54.545 8.06 0.00 46.41 3.35
67 68 6.687081 CTCTTCTGAGTCTAGTTACCGATT 57.313 41.667 0.00 0.00 35.67 3.34
68 69 7.090953 CTCTTCTGAGTCTAGTTACCGATTT 57.909 40.000 0.00 0.00 35.67 2.17
69 70 7.086230 TCTTCTGAGTCTAGTTACCGATTTC 57.914 40.000 0.00 0.00 0.00 2.17
70 71 6.657966 TCTTCTGAGTCTAGTTACCGATTTCA 59.342 38.462 0.00 0.00 0.00 2.69
71 72 6.438259 TCTGAGTCTAGTTACCGATTTCAG 57.562 41.667 0.00 0.00 0.00 3.02
72 73 5.357314 TCTGAGTCTAGTTACCGATTTCAGG 59.643 44.000 12.20 0.00 0.00 3.86
73 74 5.258841 TGAGTCTAGTTACCGATTTCAGGA 58.741 41.667 0.00 0.00 0.00 3.86
74 75 5.892119 TGAGTCTAGTTACCGATTTCAGGAT 59.108 40.000 0.00 0.00 0.00 3.24
75 76 6.150396 AGTCTAGTTACCGATTTCAGGATG 57.850 41.667 0.00 0.00 37.54 3.51
76 77 5.069251 AGTCTAGTTACCGATTTCAGGATGG 59.931 44.000 0.00 0.00 36.16 3.51
77 78 5.068723 GTCTAGTTACCGATTTCAGGATGGA 59.931 44.000 0.00 0.00 36.16 3.41
78 79 4.138487 AGTTACCGATTTCAGGATGGAC 57.862 45.455 0.00 0.00 36.16 4.02
79 80 3.517901 AGTTACCGATTTCAGGATGGACA 59.482 43.478 0.00 0.00 36.16 4.02
80 81 4.019681 AGTTACCGATTTCAGGATGGACAA 60.020 41.667 0.00 0.00 36.16 3.18
81 82 3.652057 ACCGATTTCAGGATGGACAAT 57.348 42.857 0.00 0.00 36.16 2.71
82 83 4.771114 ACCGATTTCAGGATGGACAATA 57.229 40.909 0.00 0.00 36.16 1.90
83 84 5.110814 ACCGATTTCAGGATGGACAATAA 57.889 39.130 0.00 0.00 36.16 1.40
84 85 5.126067 ACCGATTTCAGGATGGACAATAAG 58.874 41.667 0.00 0.00 36.16 1.73
85 86 5.104527 ACCGATTTCAGGATGGACAATAAGA 60.105 40.000 0.00 0.00 36.16 2.10
86 87 6.000219 CCGATTTCAGGATGGACAATAAGAT 59.000 40.000 0.00 0.00 36.16 2.40
87 88 7.161404 CCGATTTCAGGATGGACAATAAGATA 58.839 38.462 0.00 0.00 36.16 1.98
88 89 7.332926 CCGATTTCAGGATGGACAATAAGATAG 59.667 40.741 0.00 0.00 36.16 2.08
89 90 7.875041 CGATTTCAGGATGGACAATAAGATAGT 59.125 37.037 0.00 0.00 36.16 2.12
90 91 9.566432 GATTTCAGGATGGACAATAAGATAGTT 57.434 33.333 0.00 0.00 36.16 2.24
92 93 9.832445 TTTCAGGATGGACAATAAGATAGTTAC 57.168 33.333 0.00 0.00 36.16 2.50
93 94 8.547481 TCAGGATGGACAATAAGATAGTTACA 57.453 34.615 0.00 0.00 36.16 2.41
94 95 9.159254 TCAGGATGGACAATAAGATAGTTACAT 57.841 33.333 0.00 0.00 36.16 2.29
95 96 9.212641 CAGGATGGACAATAAGATAGTTACATG 57.787 37.037 0.00 0.00 0.00 3.21
96 97 8.378565 AGGATGGACAATAAGATAGTTACATGG 58.621 37.037 0.00 0.00 0.00 3.66
97 98 7.607991 GGATGGACAATAAGATAGTTACATGGG 59.392 40.741 0.00 0.00 0.00 4.00
98 99 7.684317 TGGACAATAAGATAGTTACATGGGA 57.316 36.000 0.00 0.00 0.00 4.37
99 100 7.506114 TGGACAATAAGATAGTTACATGGGAC 58.494 38.462 0.00 0.00 0.00 4.46
100 101 6.645415 GGACAATAAGATAGTTACATGGGACG 59.355 42.308 0.00 0.00 0.00 4.79
101 102 7.356089 ACAATAAGATAGTTACATGGGACGA 57.644 36.000 0.00 0.00 0.00 4.20
102 103 7.788026 ACAATAAGATAGTTACATGGGACGAA 58.212 34.615 0.00 0.00 0.00 3.85
103 104 7.709613 ACAATAAGATAGTTACATGGGACGAAC 59.290 37.037 0.00 0.00 0.00 3.95
104 105 5.934402 AAGATAGTTACATGGGACGAACT 57.066 39.130 0.00 1.44 36.21 3.01
105 106 5.517322 AGATAGTTACATGGGACGAACTC 57.483 43.478 0.00 0.00 34.15 3.01
106 107 4.954202 AGATAGTTACATGGGACGAACTCA 59.046 41.667 0.00 0.00 34.15 3.41
107 108 3.314541 AGTTACATGGGACGAACTCAC 57.685 47.619 0.00 0.00 0.00 3.51
108 109 2.028385 AGTTACATGGGACGAACTCACC 60.028 50.000 0.00 0.00 0.00 4.02
109 110 0.528924 TACATGGGACGAACTCACCG 59.471 55.000 0.00 0.00 0.00 4.94
110 111 1.447838 CATGGGACGAACTCACCGG 60.448 63.158 0.00 0.00 0.00 5.28
111 112 1.911766 ATGGGACGAACTCACCGGT 60.912 57.895 0.00 0.00 0.00 5.28
112 113 0.612732 ATGGGACGAACTCACCGGTA 60.613 55.000 6.87 0.00 0.00 4.02
113 114 1.246056 TGGGACGAACTCACCGGTAG 61.246 60.000 6.87 8.19 0.00 3.18
114 115 1.246737 GGGACGAACTCACCGGTAGT 61.247 60.000 6.87 8.91 0.00 2.73
126 127 3.536956 ACCGGTAGTGACACCATAATG 57.463 47.619 4.49 0.00 38.61 1.90
127 128 3.101437 ACCGGTAGTGACACCATAATGA 58.899 45.455 4.49 0.00 38.61 2.57
382 401 2.360165 GCTACTCCTCCCAAAATGCATG 59.640 50.000 0.00 0.00 0.00 4.06
488 509 0.681243 GGGTGGCAAATGGAGGAGAC 60.681 60.000 0.00 0.00 0.00 3.36
658 687 1.510844 CGAAAAGGGCCCATTTCGG 59.489 57.895 45.04 33.13 46.49 4.30
659 688 2.557059 CGAAAAGGGCCCATTTCGGC 62.557 60.000 45.04 26.01 46.49 5.54
665 694 3.451894 GCCCATTTCGGCCACCAG 61.452 66.667 2.24 0.00 43.66 4.00
666 695 3.451894 CCCATTTCGGCCACCAGC 61.452 66.667 2.24 0.00 42.60 4.85
667 696 2.361610 CCATTTCGGCCACCAGCT 60.362 61.111 2.24 0.00 43.05 4.24
676 705 4.335647 CCACCAGCTGGCCGAAGT 62.336 66.667 33.06 9.33 39.32 3.01
677 706 2.662596 CACCAGCTGGCCGAAGTA 59.337 61.111 33.06 0.00 39.32 2.24
678 707 1.741770 CACCAGCTGGCCGAAGTAC 60.742 63.158 33.06 0.00 39.32 2.73
679 708 2.214216 ACCAGCTGGCCGAAGTACA 61.214 57.895 33.06 0.00 39.32 2.90
680 709 1.741770 CCAGCTGGCCGAAGTACAC 60.742 63.158 22.33 0.00 0.00 2.90
681 710 1.293498 CAGCTGGCCGAAGTACACT 59.707 57.895 5.57 0.00 0.00 3.55
682 711 0.320771 CAGCTGGCCGAAGTACACTT 60.321 55.000 5.57 0.00 39.23 3.16
683 712 0.037232 AGCTGGCCGAAGTACACTTC 60.037 55.000 11.35 11.35 46.63 3.01
690 719 3.139029 GAAGTACACTTCGGCCTGG 57.861 57.895 0.00 0.00 42.33 4.45
691 720 0.391263 GAAGTACACTTCGGCCTGGG 60.391 60.000 0.00 0.00 42.33 4.45
692 721 2.436115 GTACACTTCGGCCTGGGC 60.436 66.667 10.75 10.75 41.06 5.36
693 722 2.606519 TACACTTCGGCCTGGGCT 60.607 61.111 18.81 0.38 41.60 5.19
694 723 1.305465 TACACTTCGGCCTGGGCTA 60.305 57.895 18.81 4.23 41.60 3.93
695 724 1.327690 TACACTTCGGCCTGGGCTAG 61.328 60.000 18.81 16.49 41.60 3.42
787 816 4.335647 CTTCGGCCCACCACAGCT 62.336 66.667 0.00 0.00 34.57 4.24
823 852 1.740664 GGGCCGACGTCCTCTTTTC 60.741 63.158 10.58 0.00 0.00 2.29
828 857 1.292541 GACGTCCTCTTTTCGGCCT 59.707 57.895 3.51 0.00 0.00 5.19
882 911 1.001760 AGGCCGACAGGGTCATAGT 59.998 57.895 0.00 0.00 45.54 2.12
893 922 6.173427 ACAGGGTCATAGTTTTGCATTTTT 57.827 33.333 0.00 0.00 0.00 1.94
1042 1086 1.079543 CTCTCCTCGCACCACCAAG 60.080 63.158 0.00 0.00 0.00 3.61
1059 1118 2.665008 AAGCAAGCGCACCACTCTGA 62.665 55.000 11.47 0.00 42.27 3.27
1110 1185 0.836606 ACATACCATGGTGGCATCGA 59.163 50.000 28.17 5.58 42.67 3.59
1226 1301 2.791503 CGACAGCGACGTCTTCATGTAT 60.792 50.000 14.70 0.00 40.82 2.29
1228 1303 4.348656 GACAGCGACGTCTTCATGTATAA 58.651 43.478 14.70 0.00 32.92 0.98
1277 1352 3.561213 CGCCACGAGCAGATGCAG 61.561 66.667 7.68 3.29 45.16 4.41
1279 1354 3.200593 CCACGAGCAGATGCAGCC 61.201 66.667 7.68 0.00 45.16 4.85
1395 1470 3.068691 TCGCGAGCTAACTGGCCT 61.069 61.111 3.71 0.00 44.13 5.19
1407 1495 1.166531 ACTGGCCTGAGCGTGTTTTC 61.167 55.000 17.64 0.00 41.24 2.29
1421 1532 5.516339 AGCGTGTTTTCTTTGAATCAACAAG 59.484 36.000 0.00 0.00 32.18 3.16
1566 1741 2.289072 CCTGTAGCTTCCCATATGTCCG 60.289 54.545 1.24 0.00 0.00 4.79
1621 1801 5.710099 GGAAATTGTACCTGATTCTTGGTCA 59.290 40.000 5.44 2.93 37.74 4.02
1629 1809 3.244353 CCTGATTCTTGGTCAGTCTGTGT 60.244 47.826 0.00 0.00 41.13 3.72
1644 1830 2.483877 TCTGTGTTGTGCCGATGAATTC 59.516 45.455 0.00 0.00 0.00 2.17
1650 1837 2.878580 TGTGCCGATGAATTCATTTGC 58.121 42.857 24.92 24.92 36.57 3.68
1714 1901 6.521821 GCAATCAAACATGATTCACATTTTGC 59.478 34.615 0.00 7.32 36.48 3.68
1761 1955 1.202710 TGCGCCCTCTCTTGTTTTGTA 60.203 47.619 4.18 0.00 0.00 2.41
1786 1980 7.082700 TCGCTTAATGATTGAATGCTGTTTA 57.917 32.000 0.00 0.00 0.00 2.01
1787 1981 7.534282 TCGCTTAATGATTGAATGCTGTTTAA 58.466 30.769 0.00 0.00 0.00 1.52
1841 2035 4.882671 ACAGCACTGTCACTGTAAAAAG 57.117 40.909 10.42 0.00 45.09 2.27
1851 2045 5.301551 TGTCACTGTAAAAAGAACATGGCAT 59.698 36.000 0.00 0.00 0.00 4.40
1871 2065 6.601613 TGGCATTCGACCTACAAATTATCTTT 59.398 34.615 0.00 0.00 0.00 2.52
1878 2072 8.630917 TCGACCTACAAATTATCTTTCCTCTAG 58.369 37.037 0.00 0.00 0.00 2.43
1948 2142 7.038799 AGTGATATTCCAATATGATTTTGGCCC 60.039 37.037 9.44 0.00 42.79 5.80
1952 2146 2.035832 CCAATATGATTTTGGCCCGGAC 59.964 50.000 0.73 0.00 37.42 4.79
2024 2219 8.033038 GGATTTTTAACCCCTCTATTCACAAAC 58.967 37.037 0.00 0.00 0.00 2.93
2034 2229 7.714813 CCCCTCTATTCACAAACAAAAATGTTT 59.285 33.333 1.30 1.30 42.08 2.83
2035 2230 8.764287 CCCTCTATTCACAAACAAAAATGTTTC 58.236 33.333 4.08 0.00 39.68 2.78
2036 2231 9.533253 CCTCTATTCACAAACAAAAATGTTTCT 57.467 29.630 4.08 0.00 39.68 2.52
2081 2276 9.730420 AGACATGTTTTGTATGTTTGTTTACTC 57.270 29.630 0.00 0.00 39.18 2.59
2082 2277 9.509855 GACATGTTTTGTATGTTTGTTTACTCA 57.490 29.630 0.00 0.00 39.18 3.41
2157 2352 6.525121 TGTGAACAGAGAAAGTAATTGTCG 57.475 37.500 0.00 0.00 36.46 4.35
2158 2353 5.465390 TGTGAACAGAGAAAGTAATTGTCGG 59.535 40.000 0.00 0.00 36.46 4.79
2159 2354 4.451096 TGAACAGAGAAAGTAATTGTCGGC 59.549 41.667 0.00 0.00 36.46 5.54
2160 2355 2.993899 ACAGAGAAAGTAATTGTCGGCG 59.006 45.455 0.00 0.00 36.46 6.46
2161 2356 2.993899 CAGAGAAAGTAATTGTCGGCGT 59.006 45.455 6.85 0.00 36.46 5.68
2162 2357 3.432252 CAGAGAAAGTAATTGTCGGCGTT 59.568 43.478 6.85 0.00 36.46 4.84
2163 2358 3.678548 AGAGAAAGTAATTGTCGGCGTTC 59.321 43.478 6.85 2.07 36.46 3.95
2164 2359 3.660865 AGAAAGTAATTGTCGGCGTTCT 58.339 40.909 6.85 2.00 0.00 3.01
2165 2360 3.432252 AGAAAGTAATTGTCGGCGTTCTG 59.568 43.478 6.85 0.00 30.83 3.02
2166 2361 1.722011 AGTAATTGTCGGCGTTCTGG 58.278 50.000 6.85 0.00 0.00 3.86
2167 2362 0.725117 GTAATTGTCGGCGTTCTGGG 59.275 55.000 6.85 0.00 0.00 4.45
2168 2363 0.609151 TAATTGTCGGCGTTCTGGGA 59.391 50.000 6.85 0.00 0.00 4.37
2169 2364 0.250553 AATTGTCGGCGTTCTGGGAA 60.251 50.000 6.85 0.00 0.00 3.97
2170 2365 0.953960 ATTGTCGGCGTTCTGGGAAC 60.954 55.000 6.85 0.00 0.00 3.62
2171 2366 3.110178 GTCGGCGTTCTGGGAACG 61.110 66.667 22.95 22.95 45.56 3.95
2172 2367 4.367023 TCGGCGTTCTGGGAACGG 62.367 66.667 26.41 15.26 43.25 4.44
2176 2371 3.633116 CGTTCTGGGAACGGGGGT 61.633 66.667 20.56 0.00 39.73 4.95
2177 2372 2.350134 GTTCTGGGAACGGGGGTC 59.650 66.667 0.00 0.00 37.31 4.46
2178 2373 2.931649 TTCTGGGAACGGGGGTCC 60.932 66.667 0.00 0.00 37.31 4.46
2189 2384 4.048470 GGGGTCCCCAGACTTGCC 62.048 72.222 23.53 0.00 44.65 4.52
2190 2385 2.936032 GGGTCCCCAGACTTGCCT 60.936 66.667 0.00 0.00 43.05 4.75
2191 2386 2.352805 GGTCCCCAGACTTGCCTG 59.647 66.667 0.00 0.00 43.05 4.85
2192 2387 2.360475 GTCCCCAGACTTGCCTGC 60.360 66.667 0.00 0.00 40.10 4.85
2193 2388 3.650950 TCCCCAGACTTGCCTGCC 61.651 66.667 0.00 0.00 32.97 4.85
2194 2389 3.655211 CCCCAGACTTGCCTGCCT 61.655 66.667 0.00 0.00 32.97 4.75
2195 2390 2.360852 CCCAGACTTGCCTGCCTG 60.361 66.667 0.00 0.00 32.97 4.85
2196 2391 3.060615 CCAGACTTGCCTGCCTGC 61.061 66.667 0.00 0.00 32.97 4.85
2197 2392 3.429141 CAGACTTGCCTGCCTGCG 61.429 66.667 0.00 0.00 0.00 5.18
2198 2393 4.711949 AGACTTGCCTGCCTGCGG 62.712 66.667 0.00 0.00 0.00 5.69
2222 2417 3.123620 GCGTGGCTCAAGCAGAGG 61.124 66.667 4.13 0.00 44.86 3.69
2227 2422 2.034687 GCTCAAGCAGAGGCCCAA 59.965 61.111 0.00 0.00 44.86 4.12
2228 2423 1.379576 GCTCAAGCAGAGGCCCAAT 60.380 57.895 0.00 0.00 44.86 3.16
2229 2424 0.107017 GCTCAAGCAGAGGCCCAATA 60.107 55.000 0.00 0.00 44.86 1.90
2230 2425 1.673168 CTCAAGCAGAGGCCCAATAC 58.327 55.000 0.00 0.00 42.56 1.89
2231 2426 0.107703 TCAAGCAGAGGCCCAATACG 60.108 55.000 0.00 0.00 42.56 3.06
2232 2427 1.097547 CAAGCAGAGGCCCAATACGG 61.098 60.000 0.00 0.00 42.56 4.02
2239 2434 4.171103 GCCCAATACGGCCCGTCT 62.171 66.667 14.44 0.00 43.66 4.18
2240 2435 2.587889 CCCAATACGGCCCGTCTT 59.412 61.111 14.44 6.56 41.54 3.01
2241 2436 1.523032 CCCAATACGGCCCGTCTTC 60.523 63.158 14.44 0.00 41.54 2.87
2242 2437 1.219664 CCAATACGGCCCGTCTTCA 59.780 57.895 14.44 0.00 41.54 3.02
2243 2438 0.179056 CCAATACGGCCCGTCTTCAT 60.179 55.000 14.44 0.00 41.54 2.57
2244 2439 1.217882 CAATACGGCCCGTCTTCATC 58.782 55.000 14.44 0.00 41.54 2.92
2245 2440 0.828022 AATACGGCCCGTCTTCATCA 59.172 50.000 14.44 0.00 41.54 3.07
2246 2441 0.828022 ATACGGCCCGTCTTCATCAA 59.172 50.000 14.44 0.00 41.54 2.57
2247 2442 0.108520 TACGGCCCGTCTTCATCAAC 60.109 55.000 14.44 0.00 41.54 3.18
2248 2443 2.106683 CGGCCCGTCTTCATCAACC 61.107 63.158 0.00 0.00 0.00 3.77
2249 2444 1.749258 GGCCCGTCTTCATCAACCC 60.749 63.158 0.00 0.00 0.00 4.11
2250 2445 1.002624 GCCCGTCTTCATCAACCCA 60.003 57.895 0.00 0.00 0.00 4.51
2251 2446 0.608035 GCCCGTCTTCATCAACCCAA 60.608 55.000 0.00 0.00 0.00 4.12
2252 2447 1.453155 CCCGTCTTCATCAACCCAAG 58.547 55.000 0.00 0.00 0.00 3.61
2253 2448 0.804989 CCGTCTTCATCAACCCAAGC 59.195 55.000 0.00 0.00 0.00 4.01
2254 2449 1.611673 CCGTCTTCATCAACCCAAGCT 60.612 52.381 0.00 0.00 0.00 3.74
2255 2450 1.734465 CGTCTTCATCAACCCAAGCTC 59.266 52.381 0.00 0.00 0.00 4.09
2256 2451 2.783135 GTCTTCATCAACCCAAGCTCA 58.217 47.619 0.00 0.00 0.00 4.26
2257 2452 3.149196 GTCTTCATCAACCCAAGCTCAA 58.851 45.455 0.00 0.00 0.00 3.02
2258 2453 3.190118 GTCTTCATCAACCCAAGCTCAAG 59.810 47.826 0.00 0.00 0.00 3.02
2259 2454 3.072915 TCTTCATCAACCCAAGCTCAAGA 59.927 43.478 0.00 0.00 0.00 3.02
2260 2455 3.063510 TCATCAACCCAAGCTCAAGAG 57.936 47.619 0.00 0.00 0.00 2.85
2311 2506 2.348998 ACGCAAGGCTTCCTCAGG 59.651 61.111 0.00 0.00 46.39 3.86
2312 2507 2.437359 CGCAAGGCTTCCTCAGGG 60.437 66.667 0.00 0.00 30.89 4.45
2313 2508 2.044551 GCAAGGCTTCCTCAGGGG 60.045 66.667 0.00 0.00 30.89 4.79
2314 2509 2.044551 CAAGGCTTCCTCAGGGGC 60.045 66.667 0.00 0.00 30.89 5.80
2315 2510 3.721706 AAGGCTTCCTCAGGGGCG 61.722 66.667 0.00 0.00 30.89 6.13
2334 2529 4.463879 CCTCACCAGGCAGGCTCG 62.464 72.222 0.00 0.00 43.14 5.03
2347 2542 4.567385 GCTCGCGAGGAGGCAGAG 62.567 72.222 35.10 10.05 43.36 3.35
2348 2543 2.826287 CTCGCGAGGAGGCAGAGA 60.826 66.667 28.40 0.00 39.22 3.10
2349 2544 2.826287 TCGCGAGGAGGCAGAGAG 60.826 66.667 3.71 0.00 0.00 3.20
2350 2545 2.826287 CGCGAGGAGGCAGAGAGA 60.826 66.667 0.00 0.00 0.00 3.10
2351 2546 2.192861 CGCGAGGAGGCAGAGAGAT 61.193 63.158 0.00 0.00 0.00 2.75
2352 2547 1.659794 GCGAGGAGGCAGAGAGATC 59.340 63.158 0.00 0.00 0.00 2.75
2353 2548 1.106351 GCGAGGAGGCAGAGAGATCA 61.106 60.000 0.00 0.00 0.00 2.92
2354 2549 1.397672 CGAGGAGGCAGAGAGATCAA 58.602 55.000 0.00 0.00 0.00 2.57
2355 2550 1.337703 CGAGGAGGCAGAGAGATCAAG 59.662 57.143 0.00 0.00 0.00 3.02
2356 2551 1.688197 GAGGAGGCAGAGAGATCAAGG 59.312 57.143 0.00 0.00 0.00 3.61
2357 2552 0.106521 GGAGGCAGAGAGATCAAGGC 59.893 60.000 0.00 0.00 0.00 4.35
2358 2553 0.829333 GAGGCAGAGAGATCAAGGCA 59.171 55.000 0.00 0.00 0.00 4.75
2359 2554 0.831966 AGGCAGAGAGATCAAGGCAG 59.168 55.000 0.00 0.00 0.00 4.85
2360 2555 0.179051 GGCAGAGAGATCAAGGCAGG 60.179 60.000 0.00 0.00 0.00 4.85
2361 2556 0.179051 GCAGAGAGATCAAGGCAGGG 60.179 60.000 0.00 0.00 0.00 4.45
2362 2557 0.469070 CAGAGAGATCAAGGCAGGGG 59.531 60.000 0.00 0.00 0.00 4.79
2363 2558 0.043940 AGAGAGATCAAGGCAGGGGT 59.956 55.000 0.00 0.00 0.00 4.95
2364 2559 1.292242 AGAGAGATCAAGGCAGGGGTA 59.708 52.381 0.00 0.00 0.00 3.69
2365 2560 1.414550 GAGAGATCAAGGCAGGGGTAC 59.585 57.143 0.00 0.00 0.00 3.34
2366 2561 1.008938 AGAGATCAAGGCAGGGGTACT 59.991 52.381 0.00 0.00 0.00 2.73
2367 2562 1.840635 GAGATCAAGGCAGGGGTACTT 59.159 52.381 0.00 0.00 0.00 2.24
2368 2563 1.840635 AGATCAAGGCAGGGGTACTTC 59.159 52.381 0.00 0.00 0.00 3.01
2369 2564 0.541863 ATCAAGGCAGGGGTACTTCG 59.458 55.000 0.00 0.00 0.00 3.79
2370 2565 1.745489 CAAGGCAGGGGTACTTCGC 60.745 63.158 0.00 0.00 0.00 4.70
2371 2566 3.310860 AAGGCAGGGGTACTTCGCG 62.311 63.158 0.00 0.00 0.00 5.87
2372 2567 3.766691 GGCAGGGGTACTTCGCGA 61.767 66.667 3.71 3.71 0.00 5.87
2373 2568 2.202756 GCAGGGGTACTTCGCGAG 60.203 66.667 9.59 6.46 0.00 5.03
2374 2569 2.494918 CAGGGGTACTTCGCGAGG 59.505 66.667 17.51 17.51 0.00 4.63
2375 2570 2.036890 AGGGGTACTTCGCGAGGT 59.963 61.111 27.33 27.33 0.00 3.85
2376 2571 2.183555 GGGGTACTTCGCGAGGTG 59.816 66.667 31.27 17.52 0.00 4.00
2377 2572 2.508663 GGGTACTTCGCGAGGTGC 60.509 66.667 31.27 29.07 41.47 5.01
2378 2573 2.572284 GGTACTTCGCGAGGTGCT 59.428 61.111 31.49 11.64 43.27 4.40
2379 2574 1.080025 GGTACTTCGCGAGGTGCTT 60.080 57.895 31.49 11.29 43.27 3.91
2380 2575 0.171903 GGTACTTCGCGAGGTGCTTA 59.828 55.000 31.49 12.79 43.27 3.09
2381 2576 1.202382 GGTACTTCGCGAGGTGCTTAT 60.202 52.381 31.49 10.25 43.27 1.73
2382 2577 1.852895 GTACTTCGCGAGGTGCTTATG 59.147 52.381 31.27 2.94 43.27 1.90
2383 2578 0.530744 ACTTCGCGAGGTGCTTATGA 59.469 50.000 24.00 0.00 43.27 2.15
2384 2579 0.924090 CTTCGCGAGGTGCTTATGAC 59.076 55.000 9.59 0.00 43.27 3.06
2385 2580 0.800683 TTCGCGAGGTGCTTATGACG 60.801 55.000 9.59 0.00 43.27 4.35
2386 2581 1.516386 CGCGAGGTGCTTATGACGT 60.516 57.895 0.00 0.00 43.27 4.34
2387 2582 0.248336 CGCGAGGTGCTTATGACGTA 60.248 55.000 0.00 0.00 43.27 3.57
2388 2583 1.796253 CGCGAGGTGCTTATGACGTAA 60.796 52.381 0.00 0.00 43.27 3.18
2389 2584 1.852895 GCGAGGTGCTTATGACGTAAG 59.147 52.381 9.70 9.70 42.26 2.34
2398 2593 3.702330 CTTATGACGTAAGCCATGACGA 58.298 45.455 11.17 0.00 41.86 4.20
2399 2594 2.890808 ATGACGTAAGCCATGACGAT 57.109 45.000 11.17 0.00 39.69 3.73
2400 2595 2.203800 TGACGTAAGCCATGACGATC 57.796 50.000 11.17 6.14 41.60 3.69
2401 2596 1.121240 GACGTAAGCCATGACGATCG 58.879 55.000 14.88 14.88 41.60 3.69
2402 2597 0.870307 ACGTAAGCCATGACGATCGC 60.870 55.000 16.60 8.83 41.60 4.58
2403 2598 0.869880 CGTAAGCCATGACGATCGCA 60.870 55.000 16.60 14.60 41.60 5.10
2404 2599 1.286501 GTAAGCCATGACGATCGCAA 58.713 50.000 16.60 3.54 0.00 4.85
2405 2600 1.004927 GTAAGCCATGACGATCGCAAC 60.005 52.381 16.60 7.80 0.00 4.17
2406 2601 1.369091 AAGCCATGACGATCGCAACC 61.369 55.000 16.60 2.68 0.00 3.77
2407 2602 2.106074 GCCATGACGATCGCAACCA 61.106 57.895 16.60 8.73 0.00 3.67
2408 2603 2.009108 CCATGACGATCGCAACCAG 58.991 57.895 16.60 0.31 0.00 4.00
2409 2604 1.431488 CCATGACGATCGCAACCAGG 61.431 60.000 16.60 9.73 0.00 4.45
2410 2605 1.815421 ATGACGATCGCAACCAGGC 60.815 57.895 16.60 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.170828 TGAAAACTACGATCGAATGGATAATGG 59.829 37.037 24.34 0.00 34.82 3.16
1 2 8.004344 GTGAAAACTACGATCGAATGGATAATG 58.996 37.037 24.34 1.70 34.82 1.90
2 3 7.170998 GGTGAAAACTACGATCGAATGGATAAT 59.829 37.037 24.34 0.00 34.82 1.28
3 4 6.477688 GGTGAAAACTACGATCGAATGGATAA 59.522 38.462 24.34 0.00 34.82 1.75
4 5 5.981315 GGTGAAAACTACGATCGAATGGATA 59.019 40.000 24.34 0.99 34.82 2.59
5 6 4.809426 GGTGAAAACTACGATCGAATGGAT 59.191 41.667 24.34 0.00 38.35 3.41
6 7 4.178540 GGTGAAAACTACGATCGAATGGA 58.821 43.478 24.34 0.22 0.00 3.41
7 8 3.308866 GGGTGAAAACTACGATCGAATGG 59.691 47.826 24.34 4.66 0.00 3.16
8 9 4.032900 CAGGGTGAAAACTACGATCGAATG 59.967 45.833 24.34 13.11 0.00 2.67
9 10 4.181578 CAGGGTGAAAACTACGATCGAAT 58.818 43.478 24.34 2.14 0.00 3.34
10 11 3.581755 CAGGGTGAAAACTACGATCGAA 58.418 45.455 24.34 0.00 0.00 3.71
11 12 2.094390 CCAGGGTGAAAACTACGATCGA 60.094 50.000 24.34 4.52 0.00 3.59
12 13 2.268298 CCAGGGTGAAAACTACGATCG 58.732 52.381 14.88 14.88 0.00 3.69
13 14 2.235402 TCCCAGGGTGAAAACTACGATC 59.765 50.000 5.01 0.00 0.00 3.69
14 15 2.262637 TCCCAGGGTGAAAACTACGAT 58.737 47.619 5.01 0.00 0.00 3.73
15 16 1.719529 TCCCAGGGTGAAAACTACGA 58.280 50.000 5.01 0.00 0.00 3.43
16 17 2.027561 TCATCCCAGGGTGAAAACTACG 60.028 50.000 5.01 0.00 0.00 3.51
17 18 3.610911 CTCATCCCAGGGTGAAAACTAC 58.389 50.000 5.01 0.00 0.00 2.73
18 19 2.026262 GCTCATCCCAGGGTGAAAACTA 60.026 50.000 5.01 0.00 0.00 2.24
19 20 1.272147 GCTCATCCCAGGGTGAAAACT 60.272 52.381 5.01 0.00 0.00 2.66
20 21 1.177401 GCTCATCCCAGGGTGAAAAC 58.823 55.000 5.01 0.00 0.00 2.43
21 22 0.776810 TGCTCATCCCAGGGTGAAAA 59.223 50.000 5.01 0.00 0.00 2.29
22 23 0.329261 CTGCTCATCCCAGGGTGAAA 59.671 55.000 5.01 0.03 0.00 2.69
23 24 1.565390 CCTGCTCATCCCAGGGTGAA 61.565 60.000 5.01 0.00 44.87 3.18
24 25 1.997311 CCTGCTCATCCCAGGGTGA 60.997 63.158 5.01 7.93 44.87 4.02
25 26 2.593978 CCTGCTCATCCCAGGGTG 59.406 66.667 5.01 3.44 44.87 4.61
29 30 1.138661 GAAGAGTCCTGCTCATCCCAG 59.861 57.143 0.00 0.00 46.47 4.45
30 31 1.198713 GAAGAGTCCTGCTCATCCCA 58.801 55.000 0.00 0.00 46.47 4.37
31 32 1.138661 CAGAAGAGTCCTGCTCATCCC 59.861 57.143 0.00 0.00 46.47 3.85
32 33 2.101249 CTCAGAAGAGTCCTGCTCATCC 59.899 54.545 0.00 0.00 46.47 3.51
33 34 3.441496 CTCAGAAGAGTCCTGCTCATC 57.559 52.381 0.00 0.00 46.47 2.92
45 46 6.657966 TGAAATCGGTAACTAGACTCAGAAGA 59.342 38.462 0.00 0.00 0.00 2.87
46 47 6.853720 TGAAATCGGTAACTAGACTCAGAAG 58.146 40.000 0.00 0.00 0.00 2.85
47 48 6.127703 CCTGAAATCGGTAACTAGACTCAGAA 60.128 42.308 0.00 0.00 34.29 3.02
48 49 5.357314 CCTGAAATCGGTAACTAGACTCAGA 59.643 44.000 0.00 0.00 34.29 3.27
49 50 5.357314 TCCTGAAATCGGTAACTAGACTCAG 59.643 44.000 0.00 0.00 33.17 3.35
50 51 5.258841 TCCTGAAATCGGTAACTAGACTCA 58.741 41.667 0.00 0.00 0.00 3.41
51 52 5.831702 TCCTGAAATCGGTAACTAGACTC 57.168 43.478 0.00 0.00 0.00 3.36
52 53 5.069251 CCATCCTGAAATCGGTAACTAGACT 59.931 44.000 0.00 0.00 0.00 3.24
53 54 5.068723 TCCATCCTGAAATCGGTAACTAGAC 59.931 44.000 0.00 0.00 0.00 2.59
54 55 5.068723 GTCCATCCTGAAATCGGTAACTAGA 59.931 44.000 0.00 0.00 0.00 2.43
55 56 5.163447 TGTCCATCCTGAAATCGGTAACTAG 60.163 44.000 0.00 0.00 0.00 2.57
56 57 4.712829 TGTCCATCCTGAAATCGGTAACTA 59.287 41.667 0.00 0.00 0.00 2.24
57 58 3.517901 TGTCCATCCTGAAATCGGTAACT 59.482 43.478 0.00 0.00 0.00 2.24
58 59 3.869065 TGTCCATCCTGAAATCGGTAAC 58.131 45.455 0.00 0.00 0.00 2.50
59 60 4.561500 TTGTCCATCCTGAAATCGGTAA 57.438 40.909 0.00 0.00 0.00 2.85
60 61 4.771114 ATTGTCCATCCTGAAATCGGTA 57.229 40.909 0.00 0.00 0.00 4.02
61 62 3.652057 ATTGTCCATCCTGAAATCGGT 57.348 42.857 0.00 0.00 0.00 4.69
62 63 5.368145 TCTTATTGTCCATCCTGAAATCGG 58.632 41.667 0.00 0.00 0.00 4.18
63 64 7.875041 ACTATCTTATTGTCCATCCTGAAATCG 59.125 37.037 0.00 0.00 0.00 3.34
64 65 9.566432 AACTATCTTATTGTCCATCCTGAAATC 57.434 33.333 0.00 0.00 0.00 2.17
66 67 9.832445 GTAACTATCTTATTGTCCATCCTGAAA 57.168 33.333 0.00 0.00 0.00 2.69
67 68 8.988060 TGTAACTATCTTATTGTCCATCCTGAA 58.012 33.333 0.00 0.00 0.00 3.02
68 69 8.547481 TGTAACTATCTTATTGTCCATCCTGA 57.453 34.615 0.00 0.00 0.00 3.86
69 70 9.212641 CATGTAACTATCTTATTGTCCATCCTG 57.787 37.037 0.00 0.00 0.00 3.86
70 71 8.378565 CCATGTAACTATCTTATTGTCCATCCT 58.621 37.037 0.00 0.00 0.00 3.24
71 72 7.607991 CCCATGTAACTATCTTATTGTCCATCC 59.392 40.741 0.00 0.00 0.00 3.51
72 73 8.375506 TCCCATGTAACTATCTTATTGTCCATC 58.624 37.037 0.00 0.00 0.00 3.51
73 74 8.157476 GTCCCATGTAACTATCTTATTGTCCAT 58.843 37.037 0.00 0.00 0.00 3.41
74 75 7.506114 GTCCCATGTAACTATCTTATTGTCCA 58.494 38.462 0.00 0.00 0.00 4.02
75 76 6.645415 CGTCCCATGTAACTATCTTATTGTCC 59.355 42.308 0.00 0.00 0.00 4.02
76 77 7.431249 TCGTCCCATGTAACTATCTTATTGTC 58.569 38.462 0.00 0.00 0.00 3.18
77 78 7.356089 TCGTCCCATGTAACTATCTTATTGT 57.644 36.000 0.00 0.00 0.00 2.71
78 79 7.926555 AGTTCGTCCCATGTAACTATCTTATTG 59.073 37.037 0.00 0.00 30.62 1.90
79 80 8.019656 AGTTCGTCCCATGTAACTATCTTATT 57.980 34.615 0.00 0.00 30.62 1.40
80 81 7.287005 TGAGTTCGTCCCATGTAACTATCTTAT 59.713 37.037 0.00 0.00 32.51 1.73
81 82 6.604396 TGAGTTCGTCCCATGTAACTATCTTA 59.396 38.462 0.00 0.00 32.51 2.10
82 83 5.421056 TGAGTTCGTCCCATGTAACTATCTT 59.579 40.000 0.00 0.00 32.51 2.40
83 84 4.954202 TGAGTTCGTCCCATGTAACTATCT 59.046 41.667 0.00 0.00 32.51 1.98
84 85 5.041940 GTGAGTTCGTCCCATGTAACTATC 58.958 45.833 0.00 0.00 32.51 2.08
85 86 4.142004 GGTGAGTTCGTCCCATGTAACTAT 60.142 45.833 0.00 0.00 32.51 2.12
86 87 3.194116 GGTGAGTTCGTCCCATGTAACTA 59.806 47.826 0.00 0.00 32.51 2.24
87 88 2.028385 GGTGAGTTCGTCCCATGTAACT 60.028 50.000 0.00 0.00 34.96 2.24
88 89 2.344025 GGTGAGTTCGTCCCATGTAAC 58.656 52.381 0.00 0.00 0.00 2.50
89 90 1.067425 CGGTGAGTTCGTCCCATGTAA 60.067 52.381 0.00 0.00 0.00 2.41
90 91 0.528924 CGGTGAGTTCGTCCCATGTA 59.471 55.000 0.00 0.00 0.00 2.29
91 92 1.292223 CGGTGAGTTCGTCCCATGT 59.708 57.895 0.00 0.00 0.00 3.21
92 93 1.447838 CCGGTGAGTTCGTCCCATG 60.448 63.158 0.00 0.00 0.00 3.66
93 94 0.612732 TACCGGTGAGTTCGTCCCAT 60.613 55.000 19.93 0.00 0.00 4.00
94 95 1.228521 TACCGGTGAGTTCGTCCCA 60.229 57.895 19.93 0.00 0.00 4.37
95 96 1.246737 ACTACCGGTGAGTTCGTCCC 61.247 60.000 19.93 0.00 0.00 4.46
96 97 2.261215 ACTACCGGTGAGTTCGTCC 58.739 57.895 19.93 0.00 0.00 4.79
105 106 3.118920 TCATTATGGTGTCACTACCGGTG 60.119 47.826 19.93 10.05 43.87 4.94
106 107 3.101437 TCATTATGGTGTCACTACCGGT 58.899 45.455 13.98 13.98 43.87 5.28
107 108 3.812156 TCATTATGGTGTCACTACCGG 57.188 47.619 0.00 0.00 43.87 5.28
108 109 5.657470 CATTCATTATGGTGTCACTACCG 57.343 43.478 2.35 0.00 43.87 4.02
120 121 8.230486 GCTTCGAAGGTATAACCATTCATTATG 58.770 37.037 25.77 0.00 41.95 1.90
121 122 7.117812 CGCTTCGAAGGTATAACCATTCATTAT 59.882 37.037 25.77 0.00 41.95 1.28
122 123 6.422701 CGCTTCGAAGGTATAACCATTCATTA 59.577 38.462 25.77 0.00 41.95 1.90
123 124 5.236478 CGCTTCGAAGGTATAACCATTCATT 59.764 40.000 25.77 0.00 41.95 2.57
124 125 4.750098 CGCTTCGAAGGTATAACCATTCAT 59.250 41.667 25.77 0.00 41.95 2.57
125 126 4.116961 CGCTTCGAAGGTATAACCATTCA 58.883 43.478 25.77 0.00 41.95 2.57
126 127 4.025979 CACGCTTCGAAGGTATAACCATTC 60.026 45.833 25.77 4.32 41.95 2.67
127 128 3.869246 CACGCTTCGAAGGTATAACCATT 59.131 43.478 25.77 0.00 41.95 3.16
235 237 0.680061 GTCACCGGAGTTGAACCTCT 59.320 55.000 9.46 0.00 0.00 3.69
407 428 1.078708 CCGACGGCCTATGGTGTTT 60.079 57.895 0.00 0.00 0.00 2.83
660 689 1.741770 GTACTTCGGCCAGCTGGTG 60.742 63.158 32.81 24.84 37.57 4.17
661 690 2.214216 TGTACTTCGGCCAGCTGGT 61.214 57.895 32.81 15.30 37.57 4.00
662 691 1.741770 GTGTACTTCGGCCAGCTGG 60.742 63.158 29.34 29.34 38.53 4.85
663 692 0.320771 AAGTGTACTTCGGCCAGCTG 60.321 55.000 6.78 6.78 0.00 4.24
664 693 0.037232 GAAGTGTACTTCGGCCAGCT 60.037 55.000 2.24 0.00 42.33 4.24
665 694 2.457080 GAAGTGTACTTCGGCCAGC 58.543 57.895 2.24 0.00 42.33 4.85
672 701 0.391263 CCCAGGCCGAAGTGTACTTC 60.391 60.000 13.43 13.43 46.63 3.01
673 702 1.677552 CCCAGGCCGAAGTGTACTT 59.322 57.895 0.00 0.00 39.23 2.24
674 703 2.955881 GCCCAGGCCGAAGTGTACT 61.956 63.158 0.00 0.00 34.56 2.73
675 704 1.610554 TAGCCCAGGCCGAAGTGTAC 61.611 60.000 4.70 0.00 43.17 2.90
676 705 1.305465 TAGCCCAGGCCGAAGTGTA 60.305 57.895 4.70 0.00 43.17 2.90
677 706 2.606519 TAGCCCAGGCCGAAGTGT 60.607 61.111 4.70 0.00 43.17 3.55
678 707 2.187946 CTAGCCCAGGCCGAAGTG 59.812 66.667 4.70 0.00 43.17 3.16
679 708 3.083997 CCTAGCCCAGGCCGAAGT 61.084 66.667 4.70 0.00 43.17 3.01
690 719 2.829003 GCCCTTTTCGGCCTAGCC 60.829 66.667 0.00 0.00 46.75 3.93
707 736 3.451894 GCTGGTGGCCGAAATGGG 61.452 66.667 0.00 0.00 38.63 4.00
708 737 2.361610 AGCTGGTGGCCGAAATGG 60.362 61.111 0.00 0.00 43.05 3.16
709 738 2.703798 CCAGCTGGTGGCCGAAATG 61.704 63.158 25.53 0.00 40.39 2.32
710 739 2.361610 CCAGCTGGTGGCCGAAAT 60.362 61.111 25.53 0.00 40.39 2.17
828 857 0.322187 GGACTTTTCGGCCAGCCTTA 60.322 55.000 2.24 0.00 0.00 2.69
893 922 4.270084 CGGAAACTATAGCGCAGAATGAAA 59.730 41.667 11.47 0.00 39.69 2.69
903 932 4.795970 AGCAAATTCGGAAACTATAGCG 57.204 40.909 0.00 0.00 0.00 4.26
957 986 4.160439 CAGGTATATATGGTGCGTGGAGAT 59.840 45.833 0.00 0.00 0.00 2.75
1042 1086 1.975363 GATCAGAGTGGTGCGCTTGC 61.975 60.000 9.73 0.00 39.78 4.01
1110 1185 0.998145 AAGAAGAAGGAGCAGGCCAT 59.002 50.000 5.01 0.00 0.00 4.40
1395 1470 4.891627 TGATTCAAAGAAAACACGCTCA 57.108 36.364 0.00 0.00 0.00 4.26
1407 1495 9.770503 CAGAATACAGATCTTGTTGATTCAAAG 57.229 33.333 0.00 0.00 41.29 2.77
1421 1532 6.507900 TCGATGGTTCTTCAGAATACAGATC 58.492 40.000 0.00 0.00 36.33 2.75
1542 1715 2.509548 ACATATGGGAAGCTACAGGCAA 59.490 45.455 7.80 0.00 44.79 4.52
1621 1801 0.392706 TCATCGGCACAACACAGACT 59.607 50.000 0.00 0.00 0.00 3.24
1629 1809 3.056678 AGCAAATGAATTCATCGGCACAA 60.057 39.130 30.23 3.57 37.60 3.33
1662 1849 4.156455 TCAGATCCATGGCCTTTTCTAC 57.844 45.455 6.96 0.00 0.00 2.59
1714 1901 5.875359 AGAGCGACCCAAATAGAAGTTAAAG 59.125 40.000 0.00 0.00 0.00 1.85
1761 1955 5.762825 ACAGCATTCAATCATTAAGCGAT 57.237 34.783 0.00 0.00 0.00 4.58
1786 1980 4.405358 CCATAGCATGTGGTACCCAAAATT 59.595 41.667 10.07 0.00 34.18 1.82
1787 1981 3.960102 CCATAGCATGTGGTACCCAAAAT 59.040 43.478 10.07 0.00 34.18 1.82
1841 2035 2.627945 TGTAGGTCGAATGCCATGTTC 58.372 47.619 0.00 0.00 0.00 3.18
1851 2045 7.848128 AGAGGAAAGATAATTTGTAGGTCGAA 58.152 34.615 0.00 0.00 0.00 3.71
1871 2065 7.495934 CCGAAAAGCATAAGAAAATCTAGAGGA 59.504 37.037 0.00 0.00 0.00 3.71
1988 2182 7.294720 AGAGGGGTTAAAAATCCCAAAAGATTT 59.705 33.333 10.56 0.00 46.04 2.17
2005 2199 7.899648 TTTTTGTTTGTGAATAGAGGGGTTA 57.100 32.000 0.00 0.00 0.00 2.85
2006 2200 6.800072 TTTTTGTTTGTGAATAGAGGGGTT 57.200 33.333 0.00 0.00 0.00 4.11
2007 2201 6.326323 ACATTTTTGTTTGTGAATAGAGGGGT 59.674 34.615 0.00 0.00 0.00 4.95
2055 2250 9.730420 GAGTAAACAAACATACAAAACATGTCT 57.270 29.630 0.00 0.00 42.70 3.41
2056 2251 9.509855 TGAGTAAACAAACATACAAAACATGTC 57.490 29.630 0.00 0.00 42.70 3.06
2131 2326 8.070171 CGACAATTACTTTCTCTGTTCACAAAT 58.930 33.333 0.00 0.00 0.00 2.32
2132 2327 7.406553 CGACAATTACTTTCTCTGTTCACAAA 58.593 34.615 0.00 0.00 0.00 2.83
2133 2328 6.018262 CCGACAATTACTTTCTCTGTTCACAA 60.018 38.462 0.00 0.00 0.00 3.33
2134 2329 5.465390 CCGACAATTACTTTCTCTGTTCACA 59.535 40.000 0.00 0.00 0.00 3.58
2135 2330 5.614887 GCCGACAATTACTTTCTCTGTTCAC 60.615 44.000 0.00 0.00 0.00 3.18
2136 2331 4.451096 GCCGACAATTACTTTCTCTGTTCA 59.549 41.667 0.00 0.00 0.00 3.18
2137 2332 4.434330 CGCCGACAATTACTTTCTCTGTTC 60.434 45.833 0.00 0.00 0.00 3.18
2138 2333 3.432252 CGCCGACAATTACTTTCTCTGTT 59.568 43.478 0.00 0.00 0.00 3.16
2139 2334 2.993899 CGCCGACAATTACTTTCTCTGT 59.006 45.455 0.00 0.00 0.00 3.41
2140 2335 2.993899 ACGCCGACAATTACTTTCTCTG 59.006 45.455 0.00 0.00 0.00 3.35
2141 2336 3.314541 ACGCCGACAATTACTTTCTCT 57.685 42.857 0.00 0.00 0.00 3.10
2142 2337 3.678548 AGAACGCCGACAATTACTTTCTC 59.321 43.478 0.00 0.00 0.00 2.87
2143 2338 3.432252 CAGAACGCCGACAATTACTTTCT 59.568 43.478 0.00 0.00 0.00 2.52
2144 2339 3.424433 CCAGAACGCCGACAATTACTTTC 60.424 47.826 0.00 0.00 0.00 2.62
2145 2340 2.482721 CCAGAACGCCGACAATTACTTT 59.517 45.455 0.00 0.00 0.00 2.66
2146 2341 2.073816 CCAGAACGCCGACAATTACTT 58.926 47.619 0.00 0.00 0.00 2.24
2147 2342 1.674817 CCCAGAACGCCGACAATTACT 60.675 52.381 0.00 0.00 0.00 2.24
2148 2343 0.725117 CCCAGAACGCCGACAATTAC 59.275 55.000 0.00 0.00 0.00 1.89
2149 2344 0.609151 TCCCAGAACGCCGACAATTA 59.391 50.000 0.00 0.00 0.00 1.40
2150 2345 0.250553 TTCCCAGAACGCCGACAATT 60.251 50.000 0.00 0.00 0.00 2.32
2151 2346 0.953960 GTTCCCAGAACGCCGACAAT 60.954 55.000 0.00 0.00 0.00 2.71
2152 2347 1.595929 GTTCCCAGAACGCCGACAA 60.596 57.895 0.00 0.00 0.00 3.18
2153 2348 2.029964 GTTCCCAGAACGCCGACA 59.970 61.111 0.00 0.00 0.00 4.35
2154 2349 3.110178 CGTTCCCAGAACGCCGAC 61.110 66.667 15.91 0.00 36.82 4.79
2155 2350 4.367023 CCGTTCCCAGAACGCCGA 62.367 66.667 21.18 0.00 41.85 5.54
2159 2354 3.600898 GACCCCCGTTCCCAGAACG 62.601 68.421 19.99 19.99 42.74 3.95
2160 2355 2.350134 GACCCCCGTTCCCAGAAC 59.650 66.667 0.00 0.00 0.00 3.01
2161 2356 2.931649 GGACCCCCGTTCCCAGAA 60.932 66.667 0.00 0.00 0.00 3.02
2175 2370 2.360475 GCAGGCAAGTCTGGGGAC 60.360 66.667 3.62 0.00 42.41 4.46
2176 2371 3.650950 GGCAGGCAAGTCTGGGGA 61.651 66.667 3.62 0.00 35.43 4.81
2177 2372 3.655211 AGGCAGGCAAGTCTGGGG 61.655 66.667 3.62 0.00 35.43 4.96
2178 2373 2.360852 CAGGCAGGCAAGTCTGGG 60.361 66.667 3.62 0.00 37.58 4.45
2179 2374 3.060615 GCAGGCAGGCAAGTCTGG 61.061 66.667 12.46 0.00 41.45 3.86
2180 2375 3.429141 CGCAGGCAGGCAAGTCTG 61.429 66.667 7.14 7.14 43.93 3.51
2181 2376 4.711949 CCGCAGGCAGGCAAGTCT 62.712 66.667 0.00 0.00 46.14 3.24
2204 2399 3.123620 CTCTGCTTGAGCCACGCC 61.124 66.667 0.00 0.00 41.18 5.68
2205 2400 3.123620 CCTCTGCTTGAGCCACGC 61.124 66.667 0.00 0.00 41.35 5.34
2206 2401 3.123620 GCCTCTGCTTGAGCCACG 61.124 66.667 0.00 0.00 41.35 4.94
2207 2402 2.749441 GGCCTCTGCTTGAGCCAC 60.749 66.667 0.00 0.00 41.35 5.01
2208 2403 4.039092 GGGCCTCTGCTTGAGCCA 62.039 66.667 0.84 0.00 41.35 4.75
2209 2404 2.850828 ATTGGGCCTCTGCTTGAGCC 62.851 60.000 4.53 0.00 41.35 4.70
2210 2405 0.107017 TATTGGGCCTCTGCTTGAGC 60.107 55.000 4.53 0.00 41.35 4.26
2211 2406 1.673168 GTATTGGGCCTCTGCTTGAG 58.327 55.000 4.53 1.17 42.30 3.02
2212 2407 0.107703 CGTATTGGGCCTCTGCTTGA 60.108 55.000 4.53 0.00 37.74 3.02
2213 2408 1.097547 CCGTATTGGGCCTCTGCTTG 61.098 60.000 4.53 0.00 37.74 4.01
2214 2409 1.224592 CCGTATTGGGCCTCTGCTT 59.775 57.895 4.53 0.00 37.74 3.91
2215 2410 2.911143 CCGTATTGGGCCTCTGCT 59.089 61.111 4.53 0.00 37.74 4.24
2223 2418 1.523032 GAAGACGGGCCGTATTGGG 60.523 63.158 39.75 7.28 41.32 4.12
2224 2419 0.179056 ATGAAGACGGGCCGTATTGG 60.179 55.000 39.75 8.10 41.32 3.16
2225 2420 1.217882 GATGAAGACGGGCCGTATTG 58.782 55.000 39.75 8.92 41.32 1.90
2226 2421 0.828022 TGATGAAGACGGGCCGTATT 59.172 50.000 36.06 36.06 43.89 1.89
2227 2422 0.828022 TTGATGAAGACGGGCCGTAT 59.172 50.000 34.29 28.34 41.37 3.06
2228 2423 0.108520 GTTGATGAAGACGGGCCGTA 60.109 55.000 34.29 17.74 41.37 4.02
2229 2424 1.375523 GTTGATGAAGACGGGCCGT 60.376 57.895 34.81 34.81 45.10 5.68
2230 2425 2.106683 GGTTGATGAAGACGGGCCG 61.107 63.158 27.06 27.06 0.00 6.13
2231 2426 1.749258 GGGTTGATGAAGACGGGCC 60.749 63.158 0.00 0.00 0.00 5.80
2232 2427 0.608035 TTGGGTTGATGAAGACGGGC 60.608 55.000 0.00 0.00 0.00 6.13
2233 2428 1.453155 CTTGGGTTGATGAAGACGGG 58.547 55.000 0.00 0.00 0.00 5.28
2234 2429 0.804989 GCTTGGGTTGATGAAGACGG 59.195 55.000 0.00 0.00 0.00 4.79
2235 2430 1.734465 GAGCTTGGGTTGATGAAGACG 59.266 52.381 0.00 0.00 0.00 4.18
2236 2431 2.783135 TGAGCTTGGGTTGATGAAGAC 58.217 47.619 0.00 0.00 0.00 3.01
2237 2432 3.072915 TCTTGAGCTTGGGTTGATGAAGA 59.927 43.478 0.00 0.00 0.00 2.87
2238 2433 3.415212 TCTTGAGCTTGGGTTGATGAAG 58.585 45.455 0.00 0.00 0.00 3.02
2239 2434 3.415212 CTCTTGAGCTTGGGTTGATGAA 58.585 45.455 0.00 0.00 0.00 2.57
2240 2435 2.877300 GCTCTTGAGCTTGGGTTGATGA 60.877 50.000 14.65 0.00 0.00 2.92
2241 2436 1.471684 GCTCTTGAGCTTGGGTTGATG 59.528 52.381 14.65 0.00 0.00 3.07
2242 2437 1.615384 GGCTCTTGAGCTTGGGTTGAT 60.615 52.381 20.12 0.00 34.73 2.57
2243 2438 0.250901 GGCTCTTGAGCTTGGGTTGA 60.251 55.000 20.12 0.00 34.73 3.18
2244 2439 0.251077 AGGCTCTTGAGCTTGGGTTG 60.251 55.000 20.12 0.00 34.73 3.77
2245 2440 0.037447 GAGGCTCTTGAGCTTGGGTT 59.963 55.000 20.12 2.36 34.73 4.11
2246 2441 1.682257 GAGGCTCTTGAGCTTGGGT 59.318 57.895 20.12 2.93 34.73 4.51
2247 2442 1.449246 CGAGGCTCTTGAGCTTGGG 60.449 63.158 20.12 5.51 34.73 4.12
2248 2443 2.105466 GCGAGGCTCTTGAGCTTGG 61.105 63.158 20.12 15.55 34.73 3.61
2249 2444 2.451167 CGCGAGGCTCTTGAGCTTG 61.451 63.158 20.12 12.06 34.73 4.01
2250 2445 2.125753 CGCGAGGCTCTTGAGCTT 60.126 61.111 20.12 14.14 34.73 3.74
2251 2446 3.062500 CTCGCGAGGCTCTTGAGCT 62.063 63.158 28.40 8.13 34.73 4.09
2252 2447 2.581953 CTCGCGAGGCTCTTGAGC 60.582 66.667 28.40 13.69 0.00 4.26
2253 2448 2.103934 CCTCGCGAGGCTCTTGAG 59.896 66.667 39.83 15.91 42.44 3.02
2288 2483 3.479269 GAAGCCTTGCGTCGTCCG 61.479 66.667 0.00 0.00 40.40 4.79
2289 2484 3.119096 GGAAGCCTTGCGTCGTCC 61.119 66.667 0.00 0.00 37.89 4.79
2290 2485 2.048127 AGGAAGCCTTGCGTCGTC 60.048 61.111 0.00 0.00 37.89 4.20
2291 2486 2.048127 GAGGAAGCCTTGCGTCGT 60.048 61.111 0.00 0.00 37.89 4.34
2292 2487 2.048222 TGAGGAAGCCTTGCGTCG 60.048 61.111 0.00 0.00 37.89 5.12
2293 2488 1.743252 CCTGAGGAAGCCTTGCGTC 60.743 63.158 0.00 0.00 36.39 5.19
2294 2489 2.348998 CCTGAGGAAGCCTTGCGT 59.651 61.111 0.00 0.00 31.76 5.24
2295 2490 2.437359 CCCTGAGGAAGCCTTGCG 60.437 66.667 0.00 0.00 31.76 4.85
2296 2491 2.044551 CCCCTGAGGAAGCCTTGC 60.045 66.667 0.00 0.00 38.24 4.01
2297 2492 2.044551 GCCCCTGAGGAAGCCTTG 60.045 66.667 0.00 0.00 38.24 3.61
2298 2493 3.721706 CGCCCCTGAGGAAGCCTT 61.722 66.667 0.00 0.00 38.24 4.35
2317 2512 4.463879 CGAGCCTGCCTGGTGAGG 62.464 72.222 9.00 9.00 43.19 3.86
2330 2525 4.567385 CTCTGCCTCCTCGCGAGC 62.567 72.222 30.49 20.30 37.27 5.03
2331 2526 2.826287 TCTCTGCCTCCTCGCGAG 60.826 66.667 29.06 29.06 38.46 5.03
2332 2527 2.616797 ATCTCTCTGCCTCCTCGCGA 62.617 60.000 9.26 9.26 0.00 5.87
2333 2528 2.128853 GATCTCTCTGCCTCCTCGCG 62.129 65.000 0.00 0.00 0.00 5.87
2334 2529 1.106351 TGATCTCTCTGCCTCCTCGC 61.106 60.000 0.00 0.00 0.00 5.03
2335 2530 1.337703 CTTGATCTCTCTGCCTCCTCG 59.662 57.143 0.00 0.00 0.00 4.63
2336 2531 1.688197 CCTTGATCTCTCTGCCTCCTC 59.312 57.143 0.00 0.00 0.00 3.71
2337 2532 1.792115 CCTTGATCTCTCTGCCTCCT 58.208 55.000 0.00 0.00 0.00 3.69
2338 2533 0.106521 GCCTTGATCTCTCTGCCTCC 59.893 60.000 0.00 0.00 0.00 4.30
2339 2534 0.829333 TGCCTTGATCTCTCTGCCTC 59.171 55.000 0.00 0.00 0.00 4.70
2340 2535 0.831966 CTGCCTTGATCTCTCTGCCT 59.168 55.000 0.00 0.00 0.00 4.75
2341 2536 0.179051 CCTGCCTTGATCTCTCTGCC 60.179 60.000 0.00 0.00 0.00 4.85
2342 2537 0.179051 CCCTGCCTTGATCTCTCTGC 60.179 60.000 0.00 0.00 0.00 4.26
2343 2538 0.469070 CCCCTGCCTTGATCTCTCTG 59.531 60.000 0.00 0.00 0.00 3.35
2344 2539 0.043940 ACCCCTGCCTTGATCTCTCT 59.956 55.000 0.00 0.00 0.00 3.10
2345 2540 1.414550 GTACCCCTGCCTTGATCTCTC 59.585 57.143 0.00 0.00 0.00 3.20
2346 2541 1.008938 AGTACCCCTGCCTTGATCTCT 59.991 52.381 0.00 0.00 0.00 3.10
2347 2542 1.501582 AGTACCCCTGCCTTGATCTC 58.498 55.000 0.00 0.00 0.00 2.75
2348 2543 1.840635 GAAGTACCCCTGCCTTGATCT 59.159 52.381 0.00 0.00 0.00 2.75
2349 2544 1.473434 CGAAGTACCCCTGCCTTGATC 60.473 57.143 0.00 0.00 0.00 2.92
2350 2545 0.541863 CGAAGTACCCCTGCCTTGAT 59.458 55.000 0.00 0.00 0.00 2.57
2351 2546 1.980052 CGAAGTACCCCTGCCTTGA 59.020 57.895 0.00 0.00 0.00 3.02
2352 2547 1.745489 GCGAAGTACCCCTGCCTTG 60.745 63.158 0.00 0.00 0.00 3.61
2353 2548 2.669240 GCGAAGTACCCCTGCCTT 59.331 61.111 0.00 0.00 0.00 4.35
2354 2549 3.771160 CGCGAAGTACCCCTGCCT 61.771 66.667 0.00 0.00 0.00 4.75
2355 2550 3.718210 CTCGCGAAGTACCCCTGCC 62.718 68.421 11.33 0.00 0.00 4.85
2356 2551 2.202756 CTCGCGAAGTACCCCTGC 60.203 66.667 11.33 0.00 0.00 4.85
2357 2552 2.348888 ACCTCGCGAAGTACCCCTG 61.349 63.158 8.98 0.00 0.00 4.45
2358 2553 2.036890 ACCTCGCGAAGTACCCCT 59.963 61.111 8.98 0.00 0.00 4.79
2359 2554 2.183555 CACCTCGCGAAGTACCCC 59.816 66.667 10.55 0.00 0.00 4.95
2360 2555 2.508663 GCACCTCGCGAAGTACCC 60.509 66.667 10.55 0.00 0.00 3.69
2369 2564 1.852895 CTTACGTCATAAGCACCTCGC 59.147 52.381 0.00 0.00 42.91 5.03
2377 2572 3.702330 TCGTCATGGCTTACGTCATAAG 58.298 45.455 0.00 0.00 42.96 1.73
2378 2573 3.786516 TCGTCATGGCTTACGTCATAA 57.213 42.857 0.00 0.00 39.99 1.90
2379 2574 3.608474 CGATCGTCATGGCTTACGTCATA 60.608 47.826 7.03 0.00 39.99 2.15
2380 2575 2.743938 GATCGTCATGGCTTACGTCAT 58.256 47.619 0.00 0.00 39.99 3.06
2381 2576 1.533129 CGATCGTCATGGCTTACGTCA 60.533 52.381 7.03 0.00 39.99 4.35
2382 2577 1.121240 CGATCGTCATGGCTTACGTC 58.879 55.000 7.03 0.00 39.99 4.34
2383 2578 0.870307 GCGATCGTCATGGCTTACGT 60.870 55.000 17.81 0.00 39.99 3.57
2384 2579 0.869880 TGCGATCGTCATGGCTTACG 60.870 55.000 17.81 0.00 40.40 3.18
2385 2580 1.004927 GTTGCGATCGTCATGGCTTAC 60.005 52.381 17.81 5.66 34.89 2.34
2386 2581 1.286501 GTTGCGATCGTCATGGCTTA 58.713 50.000 17.81 0.00 34.89 3.09
2387 2582 1.369091 GGTTGCGATCGTCATGGCTT 61.369 55.000 17.81 0.00 34.89 4.35
2388 2583 1.815421 GGTTGCGATCGTCATGGCT 60.815 57.895 17.81 0.00 34.89 4.75
2389 2584 2.040213 CTGGTTGCGATCGTCATGGC 62.040 60.000 17.81 8.37 34.41 4.40
2390 2585 1.431488 CCTGGTTGCGATCGTCATGG 61.431 60.000 17.81 8.12 0.00 3.66
2391 2586 2.009108 CCTGGTTGCGATCGTCATG 58.991 57.895 17.81 4.26 0.00 3.07
2392 2587 1.815421 GCCTGGTTGCGATCGTCAT 60.815 57.895 17.81 0.00 0.00 3.06
2393 2588 2.434185 GCCTGGTTGCGATCGTCA 60.434 61.111 17.81 12.32 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.