Multiple sequence alignment - TraesCS2B01G475300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G475300 chr2B 100.000 2291 0 0 1 2291 672529846 672532136 0.000000e+00 4231.0
1 TraesCS2B01G475300 chr2B 81.994 1083 128 35 768 1810 672344863 672345918 0.000000e+00 857.0
2 TraesCS2B01G475300 chr2B 84.088 729 74 21 623 1322 672859481 672858766 0.000000e+00 665.0
3 TraesCS2B01G475300 chr2B 88.519 540 46 9 796 1322 672745523 672746059 6.900000e-180 640.0
4 TraesCS2B01G475300 chr2B 77.954 948 123 55 761 1686 672319934 672320817 4.360000e-142 514.0
5 TraesCS2B01G475300 chr2B 84.542 524 64 8 1772 2291 672322814 672323324 9.450000e-139 503.0
6 TraesCS2B01G475300 chr2B 95.018 281 12 2 331 610 219576018 219575739 7.510000e-120 440.0
7 TraesCS2B01G475300 chr2B 80.847 543 65 10 996 1524 673050933 673051450 7.670000e-105 390.0
8 TraesCS2B01G475300 chr2B 83.944 355 51 6 988 1337 672668667 672669020 3.650000e-88 335.0
9 TraesCS2B01G475300 chr2B 90.141 142 13 1 1626 1767 672321000 672321140 1.400000e-42 183.0
10 TraesCS2B01G475300 chr2B 75.910 357 57 18 640 988 672080957 672081292 3.050000e-34 156.0
11 TraesCS2B01G475300 chr2B 92.308 91 6 1 238 328 672575993 672576082 6.640000e-26 128.0
12 TraesCS2B01G475300 chr2B 83.453 139 20 3 1562 1700 673006621 673006756 2.390000e-25 126.0
13 TraesCS2B01G475300 chr2B 84.091 132 12 4 205 328 672744149 672744279 4.000000e-23 119.0
14 TraesCS2B01G475300 chr2B 96.721 61 2 0 1626 1686 672320818 672320878 4.030000e-18 102.0
15 TraesCS2B01G475300 chr2B 96.721 61 2 0 1626 1686 672320939 672320999 4.030000e-18 102.0
16 TraesCS2B01G475300 chr2B 98.214 56 1 0 1626 1681 672320879 672320934 5.210000e-17 99.0
17 TraesCS2B01G475300 chr2B 85.075 67 9 1 1562 1627 673093485 673093551 1.470000e-07 67.6
18 TraesCS2B01G475300 chr2B 100.000 29 0 0 1345 1373 672669005 672669033 1.000000e-03 54.7
19 TraesCS2B01G475300 chr2A 82.498 1257 126 42 640 1842 703105431 703106647 0.000000e+00 1016.0
20 TraesCS2B01G475300 chr2A 86.709 790 61 17 625 1383 703110626 703111402 0.000000e+00 837.0
21 TraesCS2B01G475300 chr2D 88.396 767 54 15 625 1367 562580914 562581669 0.000000e+00 891.0
22 TraesCS2B01G475300 chr2D 86.591 619 67 13 1536 2145 562449789 562450400 0.000000e+00 669.0
23 TraesCS2B01G475300 chr2D 83.179 648 61 24 786 1417 562449072 562449687 1.200000e-152 549.0
24 TraesCS2B01G475300 chr2D 93.836 292 15 3 320 610 6521068 6520779 9.720000e-119 436.0
25 TraesCS2B01G475300 chr2D 80.832 553 68 15 988 1524 562807903 562808433 1.280000e-107 399.0
26 TraesCS2B01G475300 chr2D 80.488 492 61 17 988 1447 562845353 562845841 6.060000e-91 344.0
27 TraesCS2B01G475300 chr2D 79.552 357 44 17 640 988 562362157 562362492 6.370000e-56 228.0
28 TraesCS2B01G475300 chr2D 86.290 124 15 1 192 313 562580775 562580898 1.430000e-27 134.0
29 TraesCS2B01G475300 chr1D 95.406 283 11 2 328 609 349468406 349468687 1.250000e-122 449.0
30 TraesCS2B01G475300 chr7D 95.070 284 12 2 328 610 587092742 587092460 1.610000e-121 446.0
31 TraesCS2B01G475300 chr5B 95.683 278 10 2 328 604 43141335 43141059 1.610000e-121 446.0
32 TraesCS2B01G475300 chr4A 95.070 284 12 2 328 610 548783352 548783070 1.610000e-121 446.0
33 TraesCS2B01G475300 chr3D 95.652 276 11 1 328 603 459389569 459389843 2.090000e-120 442.0
34 TraesCS2B01G475300 chr7A 94.406 286 15 1 328 613 89365658 89365374 2.700000e-119 438.0
35 TraesCS2B01G475300 chr7B 92.208 308 22 2 320 626 460381395 460381701 3.500000e-118 435.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G475300 chr2B 672529846 672532136 2290 False 4231.0 4231 100.0000 1 2291 1 chr2B.!!$F3 2290
1 TraesCS2B01G475300 chr2B 672344863 672345918 1055 False 857.0 857 81.9940 768 1810 1 chr2B.!!$F2 1042
2 TraesCS2B01G475300 chr2B 672858766 672859481 715 True 665.0 665 84.0880 623 1322 1 chr2B.!!$R2 699
3 TraesCS2B01G475300 chr2B 673050933 673051450 517 False 390.0 390 80.8470 996 1524 1 chr2B.!!$F6 528
4 TraesCS2B01G475300 chr2B 672744149 672746059 1910 False 379.5 640 86.3050 205 1322 2 chr2B.!!$F10 1117
5 TraesCS2B01G475300 chr2B 672319934 672323324 3390 False 250.5 514 90.7155 761 2291 6 chr2B.!!$F8 1530
6 TraesCS2B01G475300 chr2A 703105431 703111402 5971 False 926.5 1016 84.6035 625 1842 2 chr2A.!!$F1 1217
7 TraesCS2B01G475300 chr2D 562449072 562450400 1328 False 609.0 669 84.8850 786 2145 2 chr2D.!!$F4 1359
8 TraesCS2B01G475300 chr2D 562580775 562581669 894 False 512.5 891 87.3430 192 1367 2 chr2D.!!$F5 1175
9 TraesCS2B01G475300 chr2D 562807903 562808433 530 False 399.0 399 80.8320 988 1524 1 chr2D.!!$F2 536

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
252 261 0.102844 GCGTAACAGGTGCCCGTATA 59.897 55.0 0.0 0.0 0.0 1.47 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2025 8657 0.03601 CATCGCCAAGGTGTTCCTCT 60.036 55.0 0.0 0.0 44.35 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.613977 GGATTATGGAGTCGCTGATGGG 60.614 54.545 0.00 0.00 0.00 4.00
23 24 1.758440 TATGGAGTCGCTGATGGGCC 61.758 60.000 0.00 0.00 0.00 5.80
24 25 4.899239 GGAGTCGCTGATGGGCCG 62.899 72.222 0.00 0.00 0.00 6.13
25 26 4.899239 GAGTCGCTGATGGGCCGG 62.899 72.222 0.00 0.00 0.00 6.13
47 48 2.844146 GTCAGACGGACGCGTTTG 59.156 61.111 15.53 12.04 36.65 2.93
48 49 2.355363 TCAGACGGACGCGTTTGG 60.355 61.111 15.53 8.50 0.00 3.28
49 50 3.411351 CAGACGGACGCGTTTGGG 61.411 66.667 15.53 5.68 0.00 4.12
50 51 3.920196 AGACGGACGCGTTTGGGT 61.920 61.111 15.53 9.29 45.02 4.51
53 54 4.007940 CGGACGCGTTTGGGTGTG 62.008 66.667 15.53 0.00 41.99 3.82
54 55 4.322385 GGACGCGTTTGGGTGTGC 62.322 66.667 15.53 0.00 41.99 4.57
55 56 4.322385 GACGCGTTTGGGTGTGCC 62.322 66.667 15.53 0.00 41.99 5.01
72 73 4.157120 CCGGACCGTCCCATGTCC 62.157 72.222 13.94 0.00 46.15 4.02
74 75 3.387947 GGACCGTCCCATGTCCGT 61.388 66.667 6.25 0.00 41.48 4.69
75 76 2.183555 GACCGTCCCATGTCCGTC 59.816 66.667 0.00 0.00 0.00 4.79
76 77 3.366739 GACCGTCCCATGTCCGTCC 62.367 68.421 0.00 0.00 0.00 4.79
77 78 3.075005 CCGTCCCATGTCCGTCCT 61.075 66.667 0.00 0.00 0.00 3.85
78 79 1.755395 CCGTCCCATGTCCGTCCTA 60.755 63.158 0.00 0.00 0.00 2.94
79 80 1.734137 CGTCCCATGTCCGTCCTAG 59.266 63.158 0.00 0.00 0.00 3.02
80 81 0.750546 CGTCCCATGTCCGTCCTAGA 60.751 60.000 0.00 0.00 0.00 2.43
81 82 1.705873 GTCCCATGTCCGTCCTAGAT 58.294 55.000 0.00 0.00 0.00 1.98
82 83 2.040178 GTCCCATGTCCGTCCTAGATT 58.960 52.381 0.00 0.00 0.00 2.40
83 84 2.434702 GTCCCATGTCCGTCCTAGATTT 59.565 50.000 0.00 0.00 0.00 2.17
84 85 2.434336 TCCCATGTCCGTCCTAGATTTG 59.566 50.000 0.00 0.00 0.00 2.32
85 86 2.434336 CCCATGTCCGTCCTAGATTTGA 59.566 50.000 0.00 0.00 0.00 2.69
86 87 3.493350 CCCATGTCCGTCCTAGATTTGAG 60.493 52.174 0.00 0.00 0.00 3.02
87 88 2.961526 TGTCCGTCCTAGATTTGAGC 57.038 50.000 0.00 0.00 0.00 4.26
90 91 1.757118 TCCGTCCTAGATTTGAGCTGG 59.243 52.381 0.00 0.00 0.00 4.85
91 92 1.757118 CCGTCCTAGATTTGAGCTGGA 59.243 52.381 0.00 0.00 0.00 3.86
92 93 2.366916 CCGTCCTAGATTTGAGCTGGAT 59.633 50.000 0.00 0.00 0.00 3.41
93 94 3.574396 CCGTCCTAGATTTGAGCTGGATA 59.426 47.826 0.00 0.00 0.00 2.59
94 95 4.221703 CCGTCCTAGATTTGAGCTGGATAT 59.778 45.833 0.00 0.00 0.00 1.63
95 96 5.167121 CGTCCTAGATTTGAGCTGGATATG 58.833 45.833 0.00 0.00 0.00 1.78
96 97 5.047731 CGTCCTAGATTTGAGCTGGATATGA 60.048 44.000 0.00 0.00 0.00 2.15
97 98 6.397272 GTCCTAGATTTGAGCTGGATATGAG 58.603 44.000 0.00 0.00 0.00 2.90
98 99 5.483231 TCCTAGATTTGAGCTGGATATGAGG 59.517 44.000 0.00 0.00 0.00 3.86
99 100 4.637387 AGATTTGAGCTGGATATGAGGG 57.363 45.455 0.00 0.00 0.00 4.30
100 101 4.237843 AGATTTGAGCTGGATATGAGGGA 58.762 43.478 0.00 0.00 0.00 4.20
101 102 4.850963 AGATTTGAGCTGGATATGAGGGAT 59.149 41.667 0.00 0.00 0.00 3.85
102 103 4.362470 TTTGAGCTGGATATGAGGGATG 57.638 45.455 0.00 0.00 0.00 3.51
103 104 2.981921 TGAGCTGGATATGAGGGATGT 58.018 47.619 0.00 0.00 0.00 3.06
104 105 2.902486 TGAGCTGGATATGAGGGATGTC 59.098 50.000 0.00 0.00 0.00 3.06
105 106 1.898472 AGCTGGATATGAGGGATGTCG 59.102 52.381 0.00 0.00 0.00 4.35
106 107 1.066573 GCTGGATATGAGGGATGTCGG 60.067 57.143 0.00 0.00 0.00 4.79
108 109 2.232452 CTGGATATGAGGGATGTCGGAC 59.768 54.545 0.00 0.00 0.00 4.79
109 110 2.248248 GGATATGAGGGATGTCGGACA 58.752 52.381 14.01 14.01 0.00 4.02
110 111 2.632996 GGATATGAGGGATGTCGGACAA 59.367 50.000 15.72 0.00 0.00 3.18
111 112 3.555168 GGATATGAGGGATGTCGGACAAC 60.555 52.174 15.72 12.46 0.00 3.32
123 124 3.519774 GGACAACCGAACGTTTGTG 57.480 52.632 13.99 9.34 29.93 3.33
127 128 0.315544 CAACCGAACGTTTGTGGTCG 60.316 55.000 17.59 9.23 32.37 4.79
128 129 0.740516 AACCGAACGTTTGTGGTCGT 60.741 50.000 17.59 5.20 42.12 4.34
134 135 2.748461 ACGTTTGTGGTCGTTTGATG 57.252 45.000 0.00 0.00 36.93 3.07
135 136 2.011222 ACGTTTGTGGTCGTTTGATGT 58.989 42.857 0.00 0.00 36.93 3.06
136 137 2.223157 ACGTTTGTGGTCGTTTGATGTG 60.223 45.455 0.00 0.00 36.93 3.21
138 139 3.729462 CGTTTGTGGTCGTTTGATGTGTT 60.729 43.478 0.00 0.00 0.00 3.32
139 140 4.170256 GTTTGTGGTCGTTTGATGTGTTT 58.830 39.130 0.00 0.00 0.00 2.83
140 141 3.412981 TGTGGTCGTTTGATGTGTTTG 57.587 42.857 0.00 0.00 0.00 2.93
141 142 2.098280 TGTGGTCGTTTGATGTGTTTGG 59.902 45.455 0.00 0.00 0.00 3.28
142 143 2.356382 GTGGTCGTTTGATGTGTTTGGA 59.644 45.455 0.00 0.00 0.00 3.53
143 144 3.004315 GTGGTCGTTTGATGTGTTTGGAT 59.996 43.478 0.00 0.00 0.00 3.41
144 145 3.004210 TGGTCGTTTGATGTGTTTGGATG 59.996 43.478 0.00 0.00 0.00 3.51
145 146 3.564511 GTCGTTTGATGTGTTTGGATGG 58.435 45.455 0.00 0.00 0.00 3.51
146 147 2.556189 TCGTTTGATGTGTTTGGATGGG 59.444 45.455 0.00 0.00 0.00 4.00
147 148 2.295909 CGTTTGATGTGTTTGGATGGGT 59.704 45.455 0.00 0.00 0.00 4.51
150 151 1.349357 TGATGTGTTTGGATGGGTCGA 59.651 47.619 0.00 0.00 0.00 4.20
151 152 2.026356 TGATGTGTTTGGATGGGTCGAT 60.026 45.455 0.00 0.00 0.00 3.59
152 153 2.577606 TGTGTTTGGATGGGTCGATT 57.422 45.000 0.00 0.00 0.00 3.34
153 154 2.870175 TGTGTTTGGATGGGTCGATTT 58.130 42.857 0.00 0.00 0.00 2.17
154 155 2.556189 TGTGTTTGGATGGGTCGATTTG 59.444 45.455 0.00 0.00 0.00 2.32
155 156 2.556622 GTGTTTGGATGGGTCGATTTGT 59.443 45.455 0.00 0.00 0.00 2.83
156 157 2.817258 TGTTTGGATGGGTCGATTTGTC 59.183 45.455 0.00 0.00 0.00 3.18
157 158 3.081804 GTTTGGATGGGTCGATTTGTCT 58.918 45.455 0.00 0.00 0.00 3.41
158 159 3.433306 TTGGATGGGTCGATTTGTCTT 57.567 42.857 0.00 0.00 0.00 3.01
159 160 2.710377 TGGATGGGTCGATTTGTCTTG 58.290 47.619 0.00 0.00 0.00 3.02
160 161 2.304470 TGGATGGGTCGATTTGTCTTGA 59.696 45.455 0.00 0.00 0.00 3.02
161 162 2.678336 GGATGGGTCGATTTGTCTTGAC 59.322 50.000 0.00 0.00 0.00 3.18
162 163 2.178912 TGGGTCGATTTGTCTTGACC 57.821 50.000 1.66 1.66 45.55 4.02
166 167 1.725164 GTCGATTTGTCTTGACCGGTC 59.275 52.381 28.17 28.17 0.00 4.79
167 168 1.341852 TCGATTTGTCTTGACCGGTCA 59.658 47.619 33.23 33.23 37.91 4.02
168 169 2.139917 CGATTTGTCTTGACCGGTCAA 58.860 47.619 39.81 39.81 46.27 3.18
181 182 2.973420 GGTCAATGACCGATCCGTC 58.027 57.895 17.46 7.20 43.14 4.79
182 183 0.529992 GGTCAATGACCGATCCGTCC 60.530 60.000 17.46 0.00 43.14 4.79
183 184 0.870307 GTCAATGACCGATCCGTCCG 60.870 60.000 11.04 1.56 31.35 4.79
184 185 1.141019 CAATGACCGATCCGTCCGT 59.859 57.895 11.04 0.00 31.35 4.69
185 186 0.870307 CAATGACCGATCCGTCCGTC 60.870 60.000 11.04 0.00 34.47 4.79
187 188 3.136123 GACCGATCCGTCCGTCCA 61.136 66.667 3.07 0.00 29.68 4.02
188 189 3.122250 GACCGATCCGTCCGTCCAG 62.122 68.421 3.07 0.00 29.68 3.86
189 190 2.827190 CCGATCCGTCCGTCCAGA 60.827 66.667 0.00 0.00 0.00 3.86
203 204 2.334838 GTCCAGACGTTTAAGATGCGT 58.665 47.619 0.00 0.00 41.81 5.24
210 211 4.992951 AGACGTTTAAGATGCGTTTACCTT 59.007 37.500 0.00 0.00 39.06 3.50
244 253 2.415512 GCTAGGAAAAGCGTAACAGGTG 59.584 50.000 0.00 0.00 31.76 4.00
245 254 1.235724 AGGAAAAGCGTAACAGGTGC 58.764 50.000 0.00 0.00 0.00 5.01
247 256 0.240145 GAAAAGCGTAACAGGTGCCC 59.760 55.000 0.00 0.00 0.00 5.36
252 261 0.102844 GCGTAACAGGTGCCCGTATA 59.897 55.000 0.00 0.00 0.00 1.47
304 313 6.578020 GATACGTCGACATGGACATTTTAA 57.422 37.500 17.16 0.00 36.73 1.52
313 322 6.183360 CGACATGGACATTTTAAAGAGACTCC 60.183 42.308 0.00 0.00 0.00 3.85
325 334 1.555967 GAGACTCCTCTGGTGCTCTT 58.444 55.000 0.00 0.00 36.50 2.85
326 335 1.476488 GAGACTCCTCTGGTGCTCTTC 59.524 57.143 0.00 0.00 36.50 2.87
327 336 0.172352 GACTCCTCTGGTGCTCTTCG 59.828 60.000 0.00 0.00 0.00 3.79
328 337 0.251386 ACTCCTCTGGTGCTCTTCGA 60.251 55.000 0.00 0.00 0.00 3.71
330 339 0.967887 TCCTCTGGTGCTCTTCGAGG 60.968 60.000 10.32 10.32 42.00 4.63
332 341 1.228894 TCTGGTGCTCTTCGAGGGT 60.229 57.895 0.00 0.00 0.00 4.34
333 342 1.079543 CTGGTGCTCTTCGAGGGTG 60.080 63.158 0.00 0.00 0.00 4.61
334 343 1.821061 CTGGTGCTCTTCGAGGGTGT 61.821 60.000 0.00 0.00 0.00 4.16
335 344 1.371558 GGTGCTCTTCGAGGGTGTT 59.628 57.895 0.00 0.00 0.00 3.32
336 345 0.250338 GGTGCTCTTCGAGGGTGTTT 60.250 55.000 0.00 0.00 0.00 2.83
338 347 0.468226 TGCTCTTCGAGGGTGTTTGT 59.532 50.000 0.00 0.00 0.00 2.83
340 349 1.947456 GCTCTTCGAGGGTGTTTGTTT 59.053 47.619 0.00 0.00 0.00 2.83
341 350 2.031944 GCTCTTCGAGGGTGTTTGTTTC 60.032 50.000 0.00 0.00 0.00 2.78
343 352 2.092861 TCTTCGAGGGTGTTTGTTTCCA 60.093 45.455 0.00 0.00 0.00 3.53
344 353 1.961793 TCGAGGGTGTTTGTTTCCAG 58.038 50.000 0.00 0.00 0.00 3.86
345 354 0.951558 CGAGGGTGTTTGTTTCCAGG 59.048 55.000 0.00 0.00 0.00 4.45
346 355 1.328279 GAGGGTGTTTGTTTCCAGGG 58.672 55.000 0.00 0.00 0.00 4.45
347 356 0.930726 AGGGTGTTTGTTTCCAGGGA 59.069 50.000 0.00 0.00 0.00 4.20
348 357 1.037493 GGGTGTTTGTTTCCAGGGAC 58.963 55.000 0.00 0.00 0.00 4.46
349 358 1.411074 GGGTGTTTGTTTCCAGGGACT 60.411 52.381 0.00 0.00 43.88 3.85
351 360 3.558033 GGTGTTTGTTTCCAGGGACTTA 58.442 45.455 0.00 0.00 34.60 2.24
352 361 4.149598 GGTGTTTGTTTCCAGGGACTTAT 58.850 43.478 0.00 0.00 34.60 1.73
356 365 4.463050 TTGTTTCCAGGGACTTATTGGT 57.537 40.909 0.00 0.00 34.60 3.67
358 367 4.810345 TGTTTCCAGGGACTTATTGGTTT 58.190 39.130 0.00 0.00 34.60 3.27
359 368 5.954757 TGTTTCCAGGGACTTATTGGTTTA 58.045 37.500 0.00 0.00 34.60 2.01
363 372 3.526019 CCAGGGACTTATTGGTTTAGGGA 59.474 47.826 0.00 0.00 34.60 4.20
364 373 4.524053 CAGGGACTTATTGGTTTAGGGAC 58.476 47.826 0.00 0.00 34.60 4.46
365 374 4.227527 CAGGGACTTATTGGTTTAGGGACT 59.772 45.833 0.00 0.00 39.39 3.85
366 375 4.856182 AGGGACTTATTGGTTTAGGGACTT 59.144 41.667 0.00 0.00 34.75 3.01
368 377 6.506413 AGGGACTTATTGGTTTAGGGACTTAA 59.494 38.462 0.00 0.00 34.75 1.85
369 378 7.018851 AGGGACTTATTGGTTTAGGGACTTAAA 59.981 37.037 0.00 0.00 34.75 1.52
370 379 7.670979 GGGACTTATTGGTTTAGGGACTTAAAA 59.329 37.037 0.00 0.00 41.75 1.52
371 380 9.081204 GGACTTATTGGTTTAGGGACTTAAAAA 57.919 33.333 0.00 0.00 41.75 1.94
393 402 8.401955 AAAAAGTCCCTATAAGTCCCATCTAA 57.598 34.615 0.00 0.00 0.00 2.10
394 403 8.401955 AAAAGTCCCTATAAGTCCCATCTAAA 57.598 34.615 0.00 0.00 0.00 1.85
397 406 5.605488 GTCCCTATAAGTCCCATCTAAACCA 59.395 44.000 0.00 0.00 0.00 3.67
399 408 6.679303 TCCCTATAAGTCCCATCTAAACCAAA 59.321 38.462 0.00 0.00 0.00 3.28
400 409 6.771267 CCCTATAAGTCCCATCTAAACCAAAC 59.229 42.308 0.00 0.00 0.00 2.93
402 411 7.499232 CCTATAAGTCCCATCTAAACCAAACAG 59.501 40.741 0.00 0.00 0.00 3.16
404 413 3.655777 AGTCCCATCTAAACCAAACAGGA 59.344 43.478 0.00 0.00 41.22 3.86
405 414 4.010349 GTCCCATCTAAACCAAACAGGAG 58.990 47.826 0.00 0.00 41.22 3.69
407 416 3.356290 CCATCTAAACCAAACAGGAGGG 58.644 50.000 0.00 0.00 41.22 4.30
408 417 3.010138 CCATCTAAACCAAACAGGAGGGA 59.990 47.826 0.00 0.00 41.22 4.20
411 420 3.720002 TCTAAACCAAACAGGAGGGACTT 59.280 43.478 0.00 0.00 41.55 3.01
417 426 3.136626 CCAAACAGGAGGGACTTATAGGG 59.863 52.174 0.00 0.00 41.55 3.53
419 428 3.331718 ACAGGAGGGACTTATAGGGAC 57.668 52.381 0.00 0.00 41.55 4.46
421 430 3.275228 ACAGGAGGGACTTATAGGGACTT 59.725 47.826 0.00 0.00 41.55 3.01
422 431 4.485021 ACAGGAGGGACTTATAGGGACTTA 59.515 45.833 0.00 0.00 41.55 2.24
424 433 5.903589 CAGGAGGGACTTATAGGGACTTAAA 59.096 44.000 0.00 0.00 41.55 1.52
426 435 5.904169 GGAGGGACTTATAGGGACTTAAAGT 59.096 44.000 0.00 0.00 42.31 2.66
428 437 5.666265 AGGGACTTATAGGGACTTAAAGTGG 59.334 44.000 0.00 0.00 40.60 4.00
432 441 5.432060 ACTTATAGGGACTTAAAGTGGGCAT 59.568 40.000 0.00 0.00 39.58 4.40
433 442 4.881157 ATAGGGACTTAAAGTGGGCATT 57.119 40.909 0.00 0.00 41.75 3.56
434 443 3.542969 AGGGACTTAAAGTGGGCATTT 57.457 42.857 0.00 0.00 27.25 2.32
436 445 3.161866 GGGACTTAAAGTGGGCATTTGA 58.838 45.455 0.00 0.00 0.00 2.69
437 446 3.193479 GGGACTTAAAGTGGGCATTTGAG 59.807 47.826 0.00 0.00 31.53 3.02
438 447 4.079253 GGACTTAAAGTGGGCATTTGAGA 58.921 43.478 7.52 0.00 30.26 3.27
439 448 4.082733 GGACTTAAAGTGGGCATTTGAGAC 60.083 45.833 7.52 2.89 30.26 3.36
441 450 5.140454 ACTTAAAGTGGGCATTTGAGACTT 58.860 37.500 7.52 0.00 30.26 3.01
443 452 6.948309 ACTTAAAGTGGGCATTTGAGACTTAT 59.052 34.615 7.52 0.00 30.26 1.73
448 457 5.954150 AGTGGGCATTTGAGACTTATGAAAT 59.046 36.000 0.00 0.00 0.00 2.17
466 475 4.471386 TGAAATAAGACTCTCAAGGAGGGG 59.529 45.833 0.00 0.00 45.83 4.79
468 477 1.945580 AAGACTCTCAAGGAGGGGAC 58.054 55.000 0.00 0.00 45.83 4.46
469 478 1.089123 AGACTCTCAAGGAGGGGACT 58.911 55.000 0.00 0.00 45.83 3.85
470 479 1.435168 AGACTCTCAAGGAGGGGACTT 59.565 52.381 0.00 0.00 45.83 3.01
474 483 3.295973 CTCTCAAGGAGGGGACTTAGAG 58.704 54.545 0.00 0.00 44.43 2.43
476 485 1.008449 TCAAGGAGGGGACTTAGAGGG 59.992 57.143 0.00 0.00 44.43 4.30
477 486 1.008449 CAAGGAGGGGACTTAGAGGGA 59.992 57.143 0.00 0.00 44.43 4.20
478 487 0.637743 AGGAGGGGACTTAGAGGGAC 59.362 60.000 0.00 0.00 44.43 4.46
497 1253 9.091220 AGAGGGACTTATAGTTGTAATATGGTC 57.909 37.037 0.00 0.00 41.55 4.02
500 1256 9.708092 GGGACTTATAGTTGTAATATGGTCTTC 57.292 37.037 0.00 0.00 0.00 2.87
508 1264 8.554490 AGTTGTAATATGGTCTTCTAGTCCAT 57.446 34.615 9.73 9.73 44.36 3.41
509 1265 8.424918 AGTTGTAATATGGTCTTCTAGTCCATG 58.575 37.037 13.41 0.00 42.62 3.66
511 1267 8.319057 TGTAATATGGTCTTCTAGTCCATGTT 57.681 34.615 15.13 15.13 42.62 2.71
518 1274 5.395435 GGTCTTCTAGTCCATGTTAAGTCCC 60.395 48.000 0.00 0.00 0.00 4.46
519 1275 5.187186 GTCTTCTAGTCCATGTTAAGTCCCA 59.813 44.000 0.00 0.00 0.00 4.37
521 1277 4.030913 TCTAGTCCATGTTAAGTCCCAGG 58.969 47.826 0.00 0.00 0.00 4.45
523 1279 3.256704 AGTCCATGTTAAGTCCCAGGAA 58.743 45.455 0.00 0.00 0.00 3.36
524 1280 3.009143 AGTCCATGTTAAGTCCCAGGAAC 59.991 47.826 0.00 0.00 0.00 3.62
525 1281 2.307686 TCCATGTTAAGTCCCAGGAACC 59.692 50.000 0.00 0.00 0.00 3.62
527 1283 3.499563 CCATGTTAAGTCCCAGGAACCAA 60.500 47.826 0.00 0.00 0.00 3.67
529 1285 3.558033 TGTTAAGTCCCAGGAACCAAAC 58.442 45.455 0.00 0.00 0.00 2.93
531 1287 2.364972 AAGTCCCAGGAACCAAACAG 57.635 50.000 0.00 0.00 0.00 3.16
532 1288 0.478507 AGTCCCAGGAACCAAACAGG 59.521 55.000 0.00 0.00 45.67 4.00
546 1302 5.959618 CCAAACAGGTAGGGACTTTTTAG 57.040 43.478 0.00 0.00 41.75 1.85
547 1303 4.765339 CCAAACAGGTAGGGACTTTTTAGG 59.235 45.833 0.00 0.00 41.75 2.69
550 1306 3.586174 ACAGGTAGGGACTTTTTAGGGAC 59.414 47.826 0.00 0.00 41.75 4.46
551 1307 3.844804 CAGGTAGGGACTTTTTAGGGACT 59.155 47.826 0.00 0.00 41.75 3.85
554 1310 3.808834 AGGGACTTTTTAGGGACTTGG 57.191 47.619 0.00 0.00 34.75 3.61
555 1311 3.332968 AGGGACTTTTTAGGGACTTGGA 58.667 45.455 0.00 0.00 34.75 3.53
557 1313 3.825014 GGGACTTTTTAGGGACTTGGAAC 59.175 47.826 0.00 0.00 41.75 3.62
558 1314 4.447325 GGGACTTTTTAGGGACTTGGAACT 60.447 45.833 0.00 0.00 41.75 3.01
560 1316 6.301486 GGACTTTTTAGGGACTTGGAACTTA 58.699 40.000 0.00 0.00 41.75 2.24
561 1317 6.946583 GGACTTTTTAGGGACTTGGAACTTAT 59.053 38.462 0.00 0.00 41.75 1.73
563 1319 9.511272 GACTTTTTAGGGACTTGGAACTTATAA 57.489 33.333 0.00 0.00 41.75 0.98
572 1328 7.829706 GGGACTTGGAACTTATAAATTGAGACT 59.170 37.037 0.00 0.00 0.00 3.24
573 1329 9.886132 GGACTTGGAACTTATAAATTGAGACTA 57.114 33.333 0.00 0.00 0.00 2.59
606 1362 6.371825 CCTAAGACTTATGAACCAAACAGGAC 59.628 42.308 0.00 0.00 41.22 3.85
617 1373 3.135167 ACCAAACAGGACCTTCGTTTCTA 59.865 43.478 6.92 0.00 41.22 2.10
619 1375 4.124238 CAAACAGGACCTTCGTTTCTACA 58.876 43.478 6.92 0.00 30.66 2.74
620 1376 3.662247 ACAGGACCTTCGTTTCTACAG 57.338 47.619 0.00 0.00 0.00 2.74
621 1377 2.963782 ACAGGACCTTCGTTTCTACAGT 59.036 45.455 0.00 0.00 0.00 3.55
656 5228 3.007506 ACCAATCCACGTCACTCATAACA 59.992 43.478 0.00 0.00 0.00 2.41
674 5246 1.489230 ACACCTCCCTTTGTCGTTCTT 59.511 47.619 0.00 0.00 0.00 2.52
678 5250 2.143925 CTCCCTTTGTCGTTCTTGTCC 58.856 52.381 0.00 0.00 0.00 4.02
695 5282 4.011517 CCGGTGGCCCACGTTAGT 62.012 66.667 7.99 0.00 34.83 2.24
703 5290 0.462047 GCCCACGTTAGTCATGGAGG 60.462 60.000 0.00 0.00 35.33 4.30
724 5311 2.047274 CCACCGCAGTACACCCAG 60.047 66.667 0.00 0.00 0.00 4.45
737 5324 0.106569 CACCCAGGCATGCTGGAATA 60.107 55.000 27.62 0.00 44.39 1.75
738 5325 0.855598 ACCCAGGCATGCTGGAATAT 59.144 50.000 27.62 13.46 44.39 1.28
741 5328 2.224843 CCCAGGCATGCTGGAATATACA 60.225 50.000 27.62 0.00 44.39 2.29
745 5332 4.581824 CAGGCATGCTGGAATATACAAGTT 59.418 41.667 18.92 0.00 0.00 2.66
750 5337 6.404623 GCATGCTGGAATATACAAGTTGAACA 60.405 38.462 11.37 0.00 0.00 3.18
751 5338 7.537715 CATGCTGGAATATACAAGTTGAACAA 58.462 34.615 10.54 0.00 0.00 2.83
752 5339 7.701539 TGCTGGAATATACAAGTTGAACAAT 57.298 32.000 10.54 0.42 0.00 2.71
753 5340 7.537715 TGCTGGAATATACAAGTTGAACAATG 58.462 34.615 10.54 0.00 0.00 2.82
754 5341 6.974622 GCTGGAATATACAAGTTGAACAATGG 59.025 38.462 10.54 0.00 0.00 3.16
755 5342 7.362920 GCTGGAATATACAAGTTGAACAATGGT 60.363 37.037 10.54 0.00 0.00 3.55
756 5343 8.415950 TGGAATATACAAGTTGAACAATGGTT 57.584 30.769 10.54 0.00 40.76 3.67
764 5351 4.285863 AGTTGAACAATGGTTTCCCTTCA 58.714 39.130 0.00 0.00 37.36 3.02
766 5353 4.870123 TGAACAATGGTTTCCCTTCATG 57.130 40.909 0.00 0.00 37.36 3.07
776 5363 2.734755 TCCCTTCATGCATGGTTAGG 57.265 50.000 25.97 25.17 0.00 2.69
871 5458 6.394039 CCTTCCTCCATTTCCCCCATATATAT 59.606 42.308 0.00 0.00 0.00 0.86
920 5511 0.396811 AACTCACCCACTTTCCTCCG 59.603 55.000 0.00 0.00 0.00 4.63
922 5513 1.152204 TCACCCACTTTCCTCCGGA 60.152 57.895 2.93 2.93 0.00 5.14
1012 5641 0.311790 CAATACCATGGCGGCATCAC 59.688 55.000 23.19 0.00 39.03 3.06
1035 5664 0.460987 CCTGCGCCTTCTTCTTCGAT 60.461 55.000 4.18 0.00 0.00 3.59
1128 5757 2.791503 CGACAGCGACGTCTTCATGTAT 60.792 50.000 14.70 0.00 40.82 2.29
1129 5758 2.530177 ACAGCGACGTCTTCATGTATG 58.470 47.619 14.70 4.02 0.00 2.39
1162 5792 2.504163 CTTCTGCAGCGAGGAGTGCT 62.504 60.000 9.47 0.00 45.31 4.40
1343 6003 7.579726 AGATCTGAATTCTGAAGAAAACAACG 58.420 34.615 17.62 0.00 37.61 4.10
1390 6050 2.842496 TCTCTTTGGAGGCATCTGATGT 59.158 45.455 18.19 0.00 39.86 3.06
1394 6054 1.288188 TGGAGGCATCTGATGTTCCA 58.712 50.000 27.35 27.35 40.96 3.53
1405 6067 0.755686 GATGTTCCATCTCTCCGGCT 59.244 55.000 0.00 0.00 0.00 5.52
1423 6093 0.975040 CTGGTGCTCTAGCCTGGTCT 60.975 60.000 0.00 0.00 41.18 3.85
1430 6100 0.339859 TCTAGCCTGGTCTGGTGGAT 59.660 55.000 0.00 0.00 0.00 3.41
1473 6149 1.520342 CTACGAGAGGCAAGGCAGC 60.520 63.158 0.00 0.00 0.00 5.25
1543 6245 0.737219 GCATGTGTTCAGATGGGAGC 59.263 55.000 10.97 0.00 0.00 4.70
1563 6265 5.915196 GGAGCAAATTGTACTTGTTCAGTTC 59.085 40.000 10.77 1.86 36.17 3.01
1705 6650 1.672356 GTCGCATGTCTGCCCACTT 60.672 57.895 0.00 0.00 46.07 3.16
1720 6665 3.866449 GCCCACTTTGTTTGGTTTTGTCA 60.866 43.478 0.00 0.00 31.46 3.58
1737 6682 7.093771 GGTTTTGTCACCTAAATGATTGGATCT 60.094 37.037 0.00 0.00 33.50 2.75
1813 8431 2.632377 ACAGTTCATGGCAATCGGTAG 58.368 47.619 0.00 0.00 0.00 3.18
1814 8432 1.331756 CAGTTCATGGCAATCGGTAGC 59.668 52.381 0.00 0.00 0.00 3.58
1816 8434 0.813610 TTCATGGCAATCGGTAGCGG 60.814 55.000 15.23 0.00 0.00 5.52
1860 8478 5.449041 CCAAACAGATACATGATTTGTCGGG 60.449 44.000 0.00 2.85 39.87 5.14
1883 8507 2.194201 TCATCCCTTTGGGTTCGAAC 57.806 50.000 20.14 20.14 44.74 3.95
1888 8512 1.960689 CCCTTTGGGTTCGAACATTGT 59.039 47.619 28.24 0.00 38.25 2.71
1901 8533 2.047274 ATTGTGACGGTGGCGGAG 60.047 61.111 0.00 0.00 0.00 4.63
1902 8534 3.605749 ATTGTGACGGTGGCGGAGG 62.606 63.158 0.00 0.00 0.00 4.30
1904 8536 4.436998 GTGACGGTGGCGGAGGAG 62.437 72.222 0.00 0.00 0.00 3.69
1905 8537 4.671590 TGACGGTGGCGGAGGAGA 62.672 66.667 0.00 0.00 0.00 3.71
1906 8538 3.148279 GACGGTGGCGGAGGAGAT 61.148 66.667 0.00 0.00 0.00 2.75
1907 8539 3.432051 GACGGTGGCGGAGGAGATG 62.432 68.421 0.00 0.00 0.00 2.90
1908 8540 3.147595 CGGTGGCGGAGGAGATGA 61.148 66.667 0.00 0.00 0.00 2.92
1945 8577 2.741985 CGCACAAGGATGCCGACA 60.742 61.111 0.00 0.00 42.99 4.35
1968 8600 1.586154 GCAACATTGGTGGAGGACGG 61.586 60.000 3.45 0.00 0.00 4.79
1972 8604 2.367202 ATTGGTGGAGGACGGCGAT 61.367 57.895 16.62 0.00 0.00 4.58
2000 8632 2.268920 GTTGGAGAGGATGGCGCA 59.731 61.111 10.83 0.00 0.00 6.09
2004 8636 1.374190 GGAGAGGATGGCGCATGAT 59.626 57.895 10.83 0.00 0.00 2.45
2005 8637 0.673022 GGAGAGGATGGCGCATGATC 60.673 60.000 10.83 7.26 0.00 2.92
2006 8638 0.034476 GAGAGGATGGCGCATGATCA 59.966 55.000 10.83 0.00 0.00 2.92
2007 8639 0.471191 AGAGGATGGCGCATGATCAA 59.529 50.000 10.83 0.00 0.00 2.57
2010 8642 0.956633 GGATGGCGCATGATCAACAT 59.043 50.000 10.83 0.00 40.17 2.71
2012 8644 2.161012 GGATGGCGCATGATCAACATAG 59.839 50.000 10.83 0.00 37.46 2.23
2014 8646 2.212652 TGGCGCATGATCAACATAGTC 58.787 47.619 10.83 0.00 37.46 2.59
2018 8650 2.284952 CGCATGATCAACATAGTCGCAA 59.715 45.455 0.00 0.00 37.46 4.85
2019 8651 3.611517 GCATGATCAACATAGTCGCAAC 58.388 45.455 0.00 0.00 37.46 4.17
2020 8652 3.063861 GCATGATCAACATAGTCGCAACA 59.936 43.478 0.00 0.00 37.46 3.33
2022 8654 4.661993 TGATCAACATAGTCGCAACAAC 57.338 40.909 0.00 0.00 0.00 3.32
2024 8656 1.795872 TCAACATAGTCGCAACAACGG 59.204 47.619 0.00 0.00 0.00 4.44
2025 8657 1.795872 CAACATAGTCGCAACAACGGA 59.204 47.619 0.00 0.00 0.00 4.69
2096 8729 1.258445 GCGAGAGGAGAAAGGGGTCA 61.258 60.000 0.00 0.00 0.00 4.02
2098 8731 1.834263 CGAGAGGAGAAAGGGGTCAAT 59.166 52.381 0.00 0.00 0.00 2.57
2105 8738 6.493802 AGAGGAGAAAGGGGTCAATTTAAAAC 59.506 38.462 0.00 0.00 0.00 2.43
2111 8744 6.650427 AAGGGGTCAATTTAAAACTGAGAC 57.350 37.500 4.12 3.11 0.00 3.36
2113 8746 6.314917 AGGGGTCAATTTAAAACTGAGACAT 58.685 36.000 4.12 0.00 0.00 3.06
2123 8756 1.089920 ACTGAGACATCGCCAAATGC 58.910 50.000 0.00 0.00 0.00 3.56
2127 8760 1.470098 GAGACATCGCCAAATGCACTT 59.530 47.619 0.00 0.00 41.33 3.16
2145 8778 3.331150 ACTTTGTGTGTTGTCGAAGTGA 58.669 40.909 0.00 0.00 37.05 3.41
2177 8810 3.127030 GCCCACTACAATGTTTAGCTGTC 59.873 47.826 0.00 0.00 0.00 3.51
2179 8812 3.370978 CCACTACAATGTTTAGCTGTCGG 59.629 47.826 0.00 0.00 0.00 4.79
2181 8814 4.327357 CACTACAATGTTTAGCTGTCGGAG 59.673 45.833 0.00 0.00 0.00 4.63
2183 8816 2.301870 ACAATGTTTAGCTGTCGGAGGA 59.698 45.455 0.00 0.00 0.00 3.71
2190 8823 0.328592 AGCTGTCGGAGGAGACACTA 59.671 55.000 0.00 0.00 45.18 2.74
2195 8828 0.683504 TCGGAGGAGACACTAAGGGC 60.684 60.000 0.00 0.00 0.00 5.19
2214 8847 0.744281 CCCGCCACTTTTGTTTCTGT 59.256 50.000 0.00 0.00 0.00 3.41
2215 8848 1.950909 CCCGCCACTTTTGTTTCTGTA 59.049 47.619 0.00 0.00 0.00 2.74
2219 8852 5.047188 CCGCCACTTTTGTTTCTGTATTTT 58.953 37.500 0.00 0.00 0.00 1.82
2225 8858 8.174422 CCACTTTTGTTTCTGTATTTTTGGTTG 58.826 33.333 0.00 0.00 0.00 3.77
2226 8859 8.930760 CACTTTTGTTTCTGTATTTTTGGTTGA 58.069 29.630 0.00 0.00 0.00 3.18
2242 8875 7.470289 TTTGGTTGAAAATAACATCCAAACG 57.530 32.000 14.87 0.00 44.68 3.60
2249 8882 2.373540 TAACATCCAAACGAGGACGG 57.626 50.000 0.00 0.00 41.30 4.79
2251 8884 0.682852 ACATCCAAACGAGGACGGAA 59.317 50.000 0.00 0.00 41.30 4.30
2252 8885 1.071071 ACATCCAAACGAGGACGGAAA 59.929 47.619 0.00 0.00 41.30 3.13
2255 8888 0.872388 CCAAACGAGGACGGAAAAGG 59.128 55.000 0.00 0.00 44.46 3.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.613977 CCCATCAGCGACTCCATAATCC 60.614 54.545 0.00 0.00 0.00 3.01
1 2 2.693069 CCCATCAGCGACTCCATAATC 58.307 52.381 0.00 0.00 0.00 1.75
2 3 1.271054 GCCCATCAGCGACTCCATAAT 60.271 52.381 0.00 0.00 0.00 1.28
3 4 0.106708 GCCCATCAGCGACTCCATAA 59.893 55.000 0.00 0.00 0.00 1.90
4 5 1.748403 GCCCATCAGCGACTCCATA 59.252 57.895 0.00 0.00 0.00 2.74
5 6 2.507944 GCCCATCAGCGACTCCAT 59.492 61.111 0.00 0.00 0.00 3.41
7 8 4.899239 CGGCCCATCAGCGACTCC 62.899 72.222 0.00 0.00 0.00 3.85
8 9 4.899239 CCGGCCCATCAGCGACTC 62.899 72.222 0.00 0.00 0.00 3.36
23 24 4.436998 GTCCGTCTGACAGGCCCG 62.437 72.222 8.73 0.00 43.85 6.13
24 25 4.436998 CGTCCGTCTGACAGGCCC 62.437 72.222 8.73 4.06 44.71 5.80
27 28 4.039357 ACGCGTCCGTCTGACAGG 62.039 66.667 5.58 10.03 46.39 4.00
36 37 4.007940 CACACCCAAACGCGTCCG 62.008 66.667 14.44 6.54 41.14 4.79
37 38 4.322385 GCACACCCAAACGCGTCC 62.322 66.667 14.44 0.00 0.00 4.79
54 55 4.157120 GACATGGGACGGTCCGGG 62.157 72.222 20.35 14.11 37.43 5.73
55 56 4.157120 GGACATGGGACGGTCCGG 62.157 72.222 20.35 14.44 43.50 5.14
58 59 2.183555 GACGGACATGGGACGGTC 59.816 66.667 0.00 0.00 35.05 4.79
59 60 2.503846 TAGGACGGACATGGGACGGT 62.504 60.000 0.00 0.00 0.00 4.83
60 61 1.735376 CTAGGACGGACATGGGACGG 61.735 65.000 0.00 0.00 0.00 4.79
61 62 0.750546 TCTAGGACGGACATGGGACG 60.751 60.000 0.00 0.63 0.00 4.79
62 63 1.705873 ATCTAGGACGGACATGGGAC 58.294 55.000 0.00 0.00 0.00 4.46
63 64 2.434336 CAAATCTAGGACGGACATGGGA 59.566 50.000 0.00 0.00 0.00 4.37
65 66 3.722147 CTCAAATCTAGGACGGACATGG 58.278 50.000 0.00 0.00 0.00 3.66
66 67 3.126831 GCTCAAATCTAGGACGGACATG 58.873 50.000 0.00 0.00 0.00 3.21
67 68 3.034635 AGCTCAAATCTAGGACGGACAT 58.965 45.455 0.00 0.00 0.00 3.06
68 69 2.166459 CAGCTCAAATCTAGGACGGACA 59.834 50.000 0.00 0.00 0.00 4.02
69 70 2.482142 CCAGCTCAAATCTAGGACGGAC 60.482 54.545 0.00 0.00 0.00 4.79
70 71 1.757118 CCAGCTCAAATCTAGGACGGA 59.243 52.381 0.00 0.00 0.00 4.69
72 73 3.742433 ATCCAGCTCAAATCTAGGACG 57.258 47.619 0.00 0.00 0.00 4.79
73 74 6.352016 TCATATCCAGCTCAAATCTAGGAC 57.648 41.667 0.00 0.00 0.00 3.85
74 75 5.483231 CCTCATATCCAGCTCAAATCTAGGA 59.517 44.000 0.00 0.00 0.00 2.94
75 76 5.338219 CCCTCATATCCAGCTCAAATCTAGG 60.338 48.000 0.00 0.00 0.00 3.02
76 77 5.483231 TCCCTCATATCCAGCTCAAATCTAG 59.517 44.000 0.00 0.00 0.00 2.43
77 78 5.406163 TCCCTCATATCCAGCTCAAATCTA 58.594 41.667 0.00 0.00 0.00 1.98
78 79 4.237843 TCCCTCATATCCAGCTCAAATCT 58.762 43.478 0.00 0.00 0.00 2.40
79 80 4.630644 TCCCTCATATCCAGCTCAAATC 57.369 45.455 0.00 0.00 0.00 2.17
80 81 4.353191 ACATCCCTCATATCCAGCTCAAAT 59.647 41.667 0.00 0.00 0.00 2.32
81 82 3.718434 ACATCCCTCATATCCAGCTCAAA 59.282 43.478 0.00 0.00 0.00 2.69
82 83 3.321039 ACATCCCTCATATCCAGCTCAA 58.679 45.455 0.00 0.00 0.00 3.02
83 84 2.902486 GACATCCCTCATATCCAGCTCA 59.098 50.000 0.00 0.00 0.00 4.26
84 85 2.094286 CGACATCCCTCATATCCAGCTC 60.094 54.545 0.00 0.00 0.00 4.09
85 86 1.898472 CGACATCCCTCATATCCAGCT 59.102 52.381 0.00 0.00 0.00 4.24
86 87 1.066573 CCGACATCCCTCATATCCAGC 60.067 57.143 0.00 0.00 0.00 4.85
87 88 2.232452 GTCCGACATCCCTCATATCCAG 59.768 54.545 0.00 0.00 0.00 3.86
90 91 3.555168 GGTTGTCCGACATCCCTCATATC 60.555 52.174 15.33 0.00 33.01 1.63
91 92 2.368875 GGTTGTCCGACATCCCTCATAT 59.631 50.000 15.33 0.00 33.01 1.78
92 93 1.760613 GGTTGTCCGACATCCCTCATA 59.239 52.381 15.33 0.00 33.01 2.15
93 94 0.541863 GGTTGTCCGACATCCCTCAT 59.458 55.000 15.33 0.00 33.01 2.90
94 95 1.980052 GGTTGTCCGACATCCCTCA 59.020 57.895 15.33 0.00 33.01 3.86
95 96 4.934989 GGTTGTCCGACATCCCTC 57.065 61.111 15.33 0.24 33.01 4.30
105 106 0.028374 CCACAAACGTTCGGTTGTCC 59.972 55.000 22.71 0.00 39.30 4.02
106 107 0.728542 ACCACAAACGTTCGGTTGTC 59.271 50.000 22.71 0.00 39.30 3.18
108 109 0.315544 CGACCACAAACGTTCGGTTG 60.316 55.000 19.18 19.18 39.30 3.77
109 110 0.740516 ACGACCACAAACGTTCGGTT 60.741 50.000 15.66 1.85 39.75 4.44
110 111 1.153588 ACGACCACAAACGTTCGGT 60.154 52.632 14.76 14.76 39.75 4.69
111 112 3.708741 ACGACCACAAACGTTCGG 58.291 55.556 0.00 5.49 39.75 4.30
115 116 2.011222 ACATCAAACGACCACAAACGT 58.989 42.857 0.00 0.00 44.57 3.99
116 117 2.223157 ACACATCAAACGACCACAAACG 60.223 45.455 0.00 0.00 0.00 3.60
117 118 3.414549 ACACATCAAACGACCACAAAC 57.585 42.857 0.00 0.00 0.00 2.93
118 119 4.169508 CAAACACATCAAACGACCACAAA 58.830 39.130 0.00 0.00 0.00 2.83
119 120 3.428180 CCAAACACATCAAACGACCACAA 60.428 43.478 0.00 0.00 0.00 3.33
120 121 2.098280 CCAAACACATCAAACGACCACA 59.902 45.455 0.00 0.00 0.00 4.17
121 122 2.356382 TCCAAACACATCAAACGACCAC 59.644 45.455 0.00 0.00 0.00 4.16
123 124 3.564511 CATCCAAACACATCAAACGACC 58.435 45.455 0.00 0.00 0.00 4.79
127 128 3.611530 CGACCCATCCAAACACATCAAAC 60.612 47.826 0.00 0.00 0.00 2.93
128 129 2.556189 CGACCCATCCAAACACATCAAA 59.444 45.455 0.00 0.00 0.00 2.69
130 131 1.349357 TCGACCCATCCAAACACATCA 59.651 47.619 0.00 0.00 0.00 3.07
132 133 2.806945 ATCGACCCATCCAAACACAT 57.193 45.000 0.00 0.00 0.00 3.21
134 135 2.556622 ACAAATCGACCCATCCAAACAC 59.443 45.455 0.00 0.00 0.00 3.32
135 136 2.817258 GACAAATCGACCCATCCAAACA 59.183 45.455 0.00 0.00 0.00 2.83
136 137 3.081804 AGACAAATCGACCCATCCAAAC 58.918 45.455 0.00 0.00 0.00 2.93
138 139 3.081061 CAAGACAAATCGACCCATCCAA 58.919 45.455 0.00 0.00 0.00 3.53
139 140 2.304470 TCAAGACAAATCGACCCATCCA 59.696 45.455 0.00 0.00 0.00 3.41
140 141 2.678336 GTCAAGACAAATCGACCCATCC 59.322 50.000 0.00 0.00 0.00 3.51
141 142 2.678336 GGTCAAGACAAATCGACCCATC 59.322 50.000 2.29 0.00 41.77 3.51
142 143 2.711542 GGTCAAGACAAATCGACCCAT 58.288 47.619 2.29 0.00 41.77 4.00
143 144 1.606994 CGGTCAAGACAAATCGACCCA 60.607 52.381 2.29 0.00 44.20 4.51
144 145 1.076332 CGGTCAAGACAAATCGACCC 58.924 55.000 2.29 0.00 44.20 4.46
145 146 1.076332 CCGGTCAAGACAAATCGACC 58.924 55.000 2.29 0.00 43.73 4.79
146 147 1.725164 GACCGGTCAAGACAAATCGAC 59.275 52.381 29.75 0.00 0.00 4.20
147 148 1.341852 TGACCGGTCAAGACAAATCGA 59.658 47.619 34.60 6.79 36.53 3.59
166 167 1.141019 ACGGACGGATCGGTCATTG 59.859 57.895 28.25 20.66 38.70 2.82
167 168 3.612251 ACGGACGGATCGGTCATT 58.388 55.556 28.25 15.34 38.70 2.57
172 173 2.827190 TCTGGACGGACGGATCGG 60.827 66.667 0.00 0.00 0.00 4.18
173 174 2.408022 GTCTGGACGGACGGATCG 59.592 66.667 0.00 0.00 0.00 3.69
183 184 2.334838 ACGCATCTTAAACGTCTGGAC 58.665 47.619 0.00 0.00 34.35 4.02
184 185 2.736144 ACGCATCTTAAACGTCTGGA 57.264 45.000 0.00 0.00 34.35 3.86
185 186 3.806316 AAACGCATCTTAAACGTCTGG 57.194 42.857 0.00 0.00 39.49 3.86
187 188 4.563061 AGGTAAACGCATCTTAAACGTCT 58.437 39.130 0.00 0.00 39.49 4.18
188 189 4.916099 AGGTAAACGCATCTTAAACGTC 57.084 40.909 0.00 0.00 39.49 4.34
189 190 4.751098 TGAAGGTAAACGCATCTTAAACGT 59.249 37.500 0.00 0.00 42.81 3.99
197 198 1.076332 ACGCTGAAGGTAAACGCATC 58.924 50.000 0.00 0.00 0.00 3.91
202 203 3.729217 GCAAAAGAACGCTGAAGGTAAAC 59.271 43.478 0.00 0.00 0.00 2.01
203 204 3.630312 AGCAAAAGAACGCTGAAGGTAAA 59.370 39.130 0.00 0.00 37.02 2.01
210 211 2.831685 TCCTAGCAAAAGAACGCTGA 57.168 45.000 0.00 0.00 39.30 4.26
244 253 1.629043 TCAGGACTGGATATACGGGC 58.371 55.000 0.00 0.00 0.00 6.13
245 254 3.431415 TGATCAGGACTGGATATACGGG 58.569 50.000 0.00 0.00 0.00 5.28
247 256 5.106118 ACGATTGATCAGGACTGGATATACG 60.106 44.000 0.00 0.00 0.00 3.06
252 261 2.366916 GGACGATTGATCAGGACTGGAT 59.633 50.000 0.00 0.00 0.00 3.41
323 332 2.290641 CTGGAAACAAACACCCTCGAAG 59.709 50.000 0.00 0.00 42.06 3.79
325 334 1.476110 CCTGGAAACAAACACCCTCGA 60.476 52.381 0.00 0.00 42.06 4.04
326 335 0.951558 CCTGGAAACAAACACCCTCG 59.048 55.000 0.00 0.00 42.06 4.63
327 336 1.133606 TCCCTGGAAACAAACACCCTC 60.134 52.381 0.00 0.00 42.06 4.30
328 337 0.930726 TCCCTGGAAACAAACACCCT 59.069 50.000 0.00 0.00 42.06 4.34
330 339 2.067365 AGTCCCTGGAAACAAACACC 57.933 50.000 0.00 0.00 42.06 4.16
332 341 4.586841 CCAATAAGTCCCTGGAAACAAACA 59.413 41.667 0.00 0.00 42.06 2.83
333 342 4.587262 ACCAATAAGTCCCTGGAAACAAAC 59.413 41.667 0.00 0.00 42.06 2.93
334 343 4.810345 ACCAATAAGTCCCTGGAAACAAA 58.190 39.130 0.00 0.00 42.06 2.83
335 344 4.463050 ACCAATAAGTCCCTGGAAACAA 57.537 40.909 0.00 0.00 42.06 2.83
336 345 4.463050 AACCAATAAGTCCCTGGAAACA 57.537 40.909 0.00 0.00 39.59 2.83
338 347 5.517655 CCCTAAACCAATAAGTCCCTGGAAA 60.518 44.000 0.00 0.00 34.16 3.13
340 349 3.526019 CCCTAAACCAATAAGTCCCTGGA 59.474 47.826 0.00 0.00 34.16 3.86
341 350 3.526019 TCCCTAAACCAATAAGTCCCTGG 59.474 47.826 0.00 0.00 36.24 4.45
343 352 4.445564 AGTCCCTAAACCAATAAGTCCCT 58.554 43.478 0.00 0.00 0.00 4.20
344 353 4.857130 AGTCCCTAAACCAATAAGTCCC 57.143 45.455 0.00 0.00 0.00 4.46
345 354 8.640063 TTTTAAGTCCCTAAACCAATAAGTCC 57.360 34.615 0.00 0.00 0.00 3.85
368 377 6.910259 AGATGGGACTTATAGGGACTTTTT 57.090 37.500 0.00 0.00 41.75 1.94
369 378 8.272889 GTTTAGATGGGACTTATAGGGACTTTT 58.727 37.037 0.00 0.00 41.75 2.27
370 379 7.147355 GGTTTAGATGGGACTTATAGGGACTTT 60.147 40.741 0.00 0.00 41.75 2.66
371 380 6.329460 GGTTTAGATGGGACTTATAGGGACTT 59.671 42.308 0.00 0.00 41.75 3.01
372 381 5.845065 GGTTTAGATGGGACTTATAGGGACT 59.155 44.000 0.00 0.00 46.37 3.85
374 383 5.795079 TGGTTTAGATGGGACTTATAGGGA 58.205 41.667 0.00 0.00 0.00 4.20
375 384 6.509523 TTGGTTTAGATGGGACTTATAGGG 57.490 41.667 0.00 0.00 0.00 3.53
376 385 7.343357 TGTTTGGTTTAGATGGGACTTATAGG 58.657 38.462 0.00 0.00 0.00 2.57
378 387 7.183112 TCCTGTTTGGTTTAGATGGGACTTATA 59.817 37.037 0.00 0.00 37.07 0.98
379 388 6.011981 TCCTGTTTGGTTTAGATGGGACTTAT 60.012 38.462 0.00 0.00 37.07 1.73
383 392 4.010349 CTCCTGTTTGGTTTAGATGGGAC 58.990 47.826 0.00 0.00 37.07 4.46
384 393 3.010138 CCTCCTGTTTGGTTTAGATGGGA 59.990 47.826 0.00 0.00 37.07 4.37
386 395 3.010138 TCCCTCCTGTTTGGTTTAGATGG 59.990 47.826 0.00 0.00 37.07 3.51
388 397 3.916989 AGTCCCTCCTGTTTGGTTTAGAT 59.083 43.478 0.00 0.00 37.07 1.98
389 398 3.323775 AGTCCCTCCTGTTTGGTTTAGA 58.676 45.455 0.00 0.00 37.07 2.10
392 401 4.741928 ATAAGTCCCTCCTGTTTGGTTT 57.258 40.909 0.00 0.00 37.07 3.27
393 402 4.227527 CCTATAAGTCCCTCCTGTTTGGTT 59.772 45.833 0.00 0.00 37.07 3.67
394 403 3.780850 CCTATAAGTCCCTCCTGTTTGGT 59.219 47.826 0.00 0.00 37.07 3.67
397 406 4.038633 GTCCCTATAAGTCCCTCCTGTTT 58.961 47.826 0.00 0.00 0.00 2.83
399 408 2.866454 AGTCCCTATAAGTCCCTCCTGT 59.134 50.000 0.00 0.00 0.00 4.00
400 409 3.621682 AGTCCCTATAAGTCCCTCCTG 57.378 52.381 0.00 0.00 0.00 3.86
402 411 5.904169 ACTTTAAGTCCCTATAAGTCCCTCC 59.096 44.000 0.00 0.00 0.00 4.30
404 413 5.666265 CCACTTTAAGTCCCTATAAGTCCCT 59.334 44.000 0.00 0.00 0.00 4.20
405 414 5.163227 CCCACTTTAAGTCCCTATAAGTCCC 60.163 48.000 0.00 0.00 0.00 4.46
407 416 5.104652 TGCCCACTTTAAGTCCCTATAAGTC 60.105 44.000 0.00 0.00 0.00 3.01
408 417 4.786454 TGCCCACTTTAAGTCCCTATAAGT 59.214 41.667 0.00 0.00 0.00 2.24
410 419 5.987019 ATGCCCACTTTAAGTCCCTATAA 57.013 39.130 0.00 0.00 0.00 0.98
411 420 5.987019 AATGCCCACTTTAAGTCCCTATA 57.013 39.130 0.00 0.00 0.00 1.31
417 426 4.762251 AGTCTCAAATGCCCACTTTAAGTC 59.238 41.667 0.00 0.00 0.00 3.01
419 428 5.712152 AAGTCTCAAATGCCCACTTTAAG 57.288 39.130 0.00 0.00 0.00 1.85
421 430 6.480763 TCATAAGTCTCAAATGCCCACTTTA 58.519 36.000 0.00 0.00 0.00 1.85
422 431 5.324409 TCATAAGTCTCAAATGCCCACTTT 58.676 37.500 0.00 0.00 0.00 2.66
424 433 4.574674 TCATAAGTCTCAAATGCCCACT 57.425 40.909 0.00 0.00 0.00 4.00
426 435 7.833682 TCTTATTTCATAAGTCTCAAATGCCCA 59.166 33.333 3.93 0.00 42.21 5.36
428 437 8.897752 AGTCTTATTTCATAAGTCTCAAATGCC 58.102 33.333 3.93 0.00 42.21 4.40
436 445 9.261035 TCCTTGAGAGTCTTATTTCATAAGTCT 57.739 33.333 0.00 3.77 41.61 3.24
437 446 9.528018 CTCCTTGAGAGTCTTATTTCATAAGTC 57.472 37.037 0.00 0.00 37.60 3.01
438 447 8.482128 CCTCCTTGAGAGTCTTATTTCATAAGT 58.518 37.037 0.00 0.00 41.47 2.24
439 448 7.930865 CCCTCCTTGAGAGTCTTATTTCATAAG 59.069 40.741 0.00 0.00 41.47 1.73
441 450 6.327626 CCCCTCCTTGAGAGTCTTATTTCATA 59.672 42.308 0.00 0.00 41.47 2.15
443 452 4.471386 CCCCTCCTTGAGAGTCTTATTTCA 59.529 45.833 0.00 0.00 41.47 2.69
448 457 2.655407 AGTCCCCTCCTTGAGAGTCTTA 59.345 50.000 0.00 0.00 41.47 2.10
451 460 1.945580 AAGTCCCCTCCTTGAGAGTC 58.054 55.000 0.00 0.00 41.47 3.36
452 461 2.655407 TCTAAGTCCCCTCCTTGAGAGT 59.345 50.000 0.00 0.00 41.47 3.24
455 464 2.393646 CCTCTAAGTCCCCTCCTTGAG 58.606 57.143 0.00 0.00 0.00 3.02
456 465 1.008449 CCCTCTAAGTCCCCTCCTTGA 59.992 57.143 0.00 0.00 0.00 3.02
457 466 1.008449 TCCCTCTAAGTCCCCTCCTTG 59.992 57.143 0.00 0.00 0.00 3.61
458 467 1.008571 GTCCCTCTAAGTCCCCTCCTT 59.991 57.143 0.00 0.00 0.00 3.36
461 470 2.553911 AAGTCCCTCTAAGTCCCCTC 57.446 55.000 0.00 0.00 0.00 4.30
463 472 5.077369 ACTATAAGTCCCTCTAAGTCCCC 57.923 47.826 0.00 0.00 0.00 4.81
464 473 5.898397 ACAACTATAAGTCCCTCTAAGTCCC 59.102 44.000 0.00 0.00 0.00 4.46
474 483 9.708092 GAAGACCATATTACAACTATAAGTCCC 57.292 37.037 0.00 0.00 0.00 4.46
497 1253 5.395768 CCTGGGACTTAACATGGACTAGAAG 60.396 48.000 0.00 0.00 0.00 2.85
500 1256 4.030913 TCCTGGGACTTAACATGGACTAG 58.969 47.826 0.00 0.00 0.00 2.57
502 1258 2.915869 TCCTGGGACTTAACATGGACT 58.084 47.619 0.00 0.00 0.00 3.85
503 1259 3.344515 GTTCCTGGGACTTAACATGGAC 58.655 50.000 0.00 0.00 0.00 4.02
508 1264 3.053544 TGTTTGGTTCCTGGGACTTAACA 60.054 43.478 16.45 16.45 0.00 2.41
509 1265 3.558033 TGTTTGGTTCCTGGGACTTAAC 58.442 45.455 4.84 9.92 0.00 2.01
511 1267 2.107552 CCTGTTTGGTTCCTGGGACTTA 59.892 50.000 4.84 0.00 0.00 2.24
513 1269 0.478507 CCTGTTTGGTTCCTGGGACT 59.521 55.000 4.84 0.00 0.00 3.85
514 1270 3.036431 CCTGTTTGGTTCCTGGGAC 57.964 57.895 0.00 0.00 0.00 4.46
524 1280 4.765339 CCTAAAAAGTCCCTACCTGTTTGG 59.235 45.833 0.00 0.00 42.93 3.28
525 1281 4.765339 CCCTAAAAAGTCCCTACCTGTTTG 59.235 45.833 0.00 0.00 0.00 2.93
527 1283 4.042560 GTCCCTAAAAAGTCCCTACCTGTT 59.957 45.833 0.00 0.00 0.00 3.16
529 1285 3.844804 AGTCCCTAAAAAGTCCCTACCTG 59.155 47.826 0.00 0.00 0.00 4.00
531 1287 4.567116 CCAAGTCCCTAAAAAGTCCCTACC 60.567 50.000 0.00 0.00 0.00 3.18
532 1288 4.287845 TCCAAGTCCCTAAAAAGTCCCTAC 59.712 45.833 0.00 0.00 0.00 3.18
536 1292 4.726583 AGTTCCAAGTCCCTAAAAAGTCC 58.273 43.478 0.00 0.00 0.00 3.85
537 1293 7.997773 ATAAGTTCCAAGTCCCTAAAAAGTC 57.002 36.000 0.00 0.00 0.00 3.01
546 1302 7.829706 AGTCTCAATTTATAAGTTCCAAGTCCC 59.170 37.037 0.00 0.00 0.00 4.46
547 1303 8.794335 AGTCTCAATTTATAAGTTCCAAGTCC 57.206 34.615 0.00 0.00 0.00 3.85
582 1338 6.371825 GGTCCTGTTTGGTTCATAAGTCTTAG 59.628 42.308 0.00 0.00 37.07 2.18
583 1339 6.043938 AGGTCCTGTTTGGTTCATAAGTCTTA 59.956 38.462 0.00 0.00 37.07 2.10
584 1340 5.070685 GGTCCTGTTTGGTTCATAAGTCTT 58.929 41.667 0.00 0.00 37.07 3.01
587 1343 4.724279 AGGTCCTGTTTGGTTCATAAGT 57.276 40.909 0.00 0.00 37.07 2.24
588 1344 4.154195 CGAAGGTCCTGTTTGGTTCATAAG 59.846 45.833 0.00 0.00 37.07 1.73
589 1345 4.069304 CGAAGGTCCTGTTTGGTTCATAA 58.931 43.478 0.00 0.00 37.07 1.90
590 1346 3.071892 ACGAAGGTCCTGTTTGGTTCATA 59.928 43.478 0.00 0.00 37.07 2.15
592 1348 1.210967 ACGAAGGTCCTGTTTGGTTCA 59.789 47.619 0.00 0.00 37.07 3.18
593 1349 1.963172 ACGAAGGTCCTGTTTGGTTC 58.037 50.000 0.00 0.00 37.07 3.62
595 1351 2.092592 AGAAACGAAGGTCCTGTTTGGT 60.093 45.455 11.14 0.00 36.06 3.67
597 1353 4.124238 TGTAGAAACGAAGGTCCTGTTTG 58.876 43.478 11.14 0.00 36.06 2.93
599 1355 3.387050 ACTGTAGAAACGAAGGTCCTGTT 59.613 43.478 0.00 0.00 0.00 3.16
617 1373 8.258708 GTGGATTGGTTCTTTATCTACTACTGT 58.741 37.037 0.00 0.00 30.06 3.55
619 1375 7.123847 ACGTGGATTGGTTCTTTATCTACTACT 59.876 37.037 0.00 0.00 30.36 2.57
620 1376 7.263496 ACGTGGATTGGTTCTTTATCTACTAC 58.737 38.462 0.00 0.00 30.36 2.73
621 1377 7.123098 TGACGTGGATTGGTTCTTTATCTACTA 59.877 37.037 0.00 0.00 30.36 1.82
656 5228 1.489230 ACAAGAACGACAAAGGGAGGT 59.511 47.619 0.00 0.00 0.00 3.85
678 5250 3.945304 GACTAACGTGGGCCACCGG 62.945 68.421 30.03 19.54 40.75 5.28
695 5282 2.350895 CGGTGGTTGCCTCCATGA 59.649 61.111 0.00 0.00 39.81 3.07
703 5290 2.613506 GGTGTACTGCGGTGGTTGC 61.614 63.158 8.92 0.00 0.00 4.17
724 5311 4.580167 TCAACTTGTATATTCCAGCATGCC 59.420 41.667 15.66 0.00 31.97 4.40
754 5341 3.131046 CCTAACCATGCATGAAGGGAAAC 59.869 47.826 28.31 0.00 0.00 2.78
755 5342 3.364549 CCTAACCATGCATGAAGGGAAA 58.635 45.455 28.31 0.00 0.00 3.13
756 5343 2.949963 GCCTAACCATGCATGAAGGGAA 60.950 50.000 28.31 6.16 0.00 3.97
764 5351 0.106519 GGGTCTGCCTAACCATGCAT 60.107 55.000 0.00 0.00 38.62 3.96
766 5353 0.106519 ATGGGTCTGCCTAACCATGC 60.107 55.000 4.23 0.00 41.88 4.06
776 5363 4.830765 TGCGCGGTATGGGTCTGC 62.831 66.667 8.83 0.00 0.00 4.26
920 5511 3.797546 GCGCTGCTGCTCTTGTCC 61.798 66.667 14.03 0.00 36.97 4.02
922 5513 1.970114 AATGCGCTGCTGCTCTTGT 60.970 52.632 9.73 0.00 36.97 3.16
937 5528 4.329528 GCTTCAGAGCTAGAACTCACAATG 59.670 45.833 0.00 0.00 45.65 2.82
939 5536 3.919216 GCTTCAGAGCTAGAACTCACAA 58.081 45.455 0.00 0.00 45.65 3.33
1257 5899 2.203788 ACCTTCCTGGACTGCCGA 60.204 61.111 0.00 0.00 39.71 5.54
1343 6003 5.651530 TCGATGGTTCTTCAGAATACAGAC 58.348 41.667 0.00 0.00 36.33 3.51
1390 6050 1.306141 ACCAGCCGGAGAGATGGAA 60.306 57.895 5.05 0.00 36.62 3.53
1394 6054 2.364842 AGCACCAGCCGGAGAGAT 60.365 61.111 5.05 0.00 43.56 2.75
1405 6067 1.079256 AGACCAGGCTAGAGCACCA 59.921 57.895 3.54 0.00 44.36 4.17
1423 6093 1.284313 TGCATCTGGTACATCCACCA 58.716 50.000 0.00 0.00 46.46 4.17
1430 6100 2.803133 GCGCTAAGATGCATCTGGTACA 60.803 50.000 29.34 11.58 37.19 2.90
1443 6113 2.825387 TCGTAGGCGGCGCTAAGA 60.825 61.111 32.30 23.24 38.89 2.10
1473 6149 4.435970 TGATGCTGCCCTGCCTGG 62.436 66.667 0.00 0.00 0.00 4.45
1474 6150 2.829003 CTGATGCTGCCCTGCCTG 60.829 66.667 0.00 0.00 0.00 4.85
1475 6151 4.124943 CCTGATGCTGCCCTGCCT 62.125 66.667 0.00 0.00 0.00 4.75
1502 6180 2.706190 GGGAATCTACAGGCACCTATGT 59.294 50.000 0.00 0.00 0.00 2.29
1543 6245 7.584123 CGAGAAGAACTGAACAAGTACAATTTG 59.416 37.037 0.00 0.00 38.56 2.32
1563 6265 0.453793 AGCACAGATCGACCGAGAAG 59.546 55.000 0.00 0.00 0.00 2.85
1617 6319 8.160765 TCTTCAGATCCATGGTGTTTACTTTTA 58.839 33.333 12.58 0.00 0.00 1.52
1681 6626 1.503542 GCAGACATGCGACCCAAAG 59.496 57.895 0.00 0.00 43.87 2.77
1705 6650 6.936279 TCATTTAGGTGACAAAACCAAACAA 58.064 32.000 0.00 0.00 43.20 2.83
1720 6665 6.725834 ACCAAACAAGATCCAATCATTTAGGT 59.274 34.615 0.00 0.00 0.00 3.08
1737 6682 3.433615 CGCAAAAGGACAAAACCAAACAA 59.566 39.130 0.00 0.00 0.00 2.83
1813 8431 2.818274 CCGGTTGGAGTTAGCCGC 60.818 66.667 0.00 0.00 42.24 6.53
1814 8432 1.447314 GACCGGTTGGAGTTAGCCG 60.447 63.158 9.42 0.00 43.06 5.52
1816 8434 1.154197 GTTGACCGGTTGGAGTTAGC 58.846 55.000 9.42 0.00 39.21 3.09
1883 8507 2.358125 TCCGCCACCGTCACAATG 60.358 61.111 0.00 0.00 0.00 2.82
1888 8512 3.957435 ATCTCCTCCGCCACCGTCA 62.957 63.158 0.00 0.00 0.00 4.35
1901 8533 1.542987 GCTCTCCATTGCCTCATCTCC 60.543 57.143 0.00 0.00 0.00 3.71
1902 8534 1.873069 CGCTCTCCATTGCCTCATCTC 60.873 57.143 0.00 0.00 0.00 2.75
1903 8535 0.106335 CGCTCTCCATTGCCTCATCT 59.894 55.000 0.00 0.00 0.00 2.90
1904 8536 0.883814 CCGCTCTCCATTGCCTCATC 60.884 60.000 0.00 0.00 0.00 2.92
1905 8537 1.147824 CCGCTCTCCATTGCCTCAT 59.852 57.895 0.00 0.00 0.00 2.90
1906 8538 2.244117 GACCGCTCTCCATTGCCTCA 62.244 60.000 0.00 0.00 0.00 3.86
1907 8539 1.522580 GACCGCTCTCCATTGCCTC 60.523 63.158 0.00 0.00 0.00 4.70
1908 8540 2.586792 GACCGCTCTCCATTGCCT 59.413 61.111 0.00 0.00 0.00 4.75
1945 8577 0.542702 CCTCCACCAATGTTGCCCTT 60.543 55.000 0.00 0.00 0.00 3.95
1955 8587 3.000819 ATCGCCGTCCTCCACCAA 61.001 61.111 0.00 0.00 0.00 3.67
1958 8590 2.509336 CACATCGCCGTCCTCCAC 60.509 66.667 0.00 0.00 0.00 4.02
1968 8600 0.664166 CCAACACCTTTGCACATCGC 60.664 55.000 0.00 0.00 42.89 4.58
1972 8604 1.679139 CTCTCCAACACCTTTGCACA 58.321 50.000 0.00 0.00 0.00 4.57
2000 8632 4.201714 CGTTGTTGCGACTATGTTGATCAT 60.202 41.667 5.50 0.00 40.25 2.45
2004 8636 1.795872 CCGTTGTTGCGACTATGTTGA 59.204 47.619 5.50 0.00 0.00 3.18
2005 8637 1.795872 TCCGTTGTTGCGACTATGTTG 59.204 47.619 5.50 0.00 0.00 3.33
2006 8638 2.066262 CTCCGTTGTTGCGACTATGTT 58.934 47.619 5.50 0.00 0.00 2.71
2007 8639 1.271379 TCTCCGTTGTTGCGACTATGT 59.729 47.619 5.50 0.00 0.00 2.29
2010 8642 0.242825 CCTCTCCGTTGTTGCGACTA 59.757 55.000 5.50 0.00 0.00 2.59
2012 8644 0.599204 TTCCTCTCCGTTGTTGCGAC 60.599 55.000 0.00 0.00 0.00 5.19
2014 8646 0.878523 TGTTCCTCTCCGTTGTTGCG 60.879 55.000 0.00 0.00 0.00 4.85
2018 8650 1.129058 AAGGTGTTCCTCTCCGTTGT 58.871 50.000 0.00 0.00 44.35 3.32
2019 8651 1.512926 CAAGGTGTTCCTCTCCGTTG 58.487 55.000 0.00 0.00 44.35 4.10
2020 8652 0.396811 CCAAGGTGTTCCTCTCCGTT 59.603 55.000 0.00 0.00 44.35 4.44
2022 8654 1.376037 GCCAAGGTGTTCCTCTCCG 60.376 63.158 0.00 0.00 44.35 4.63
2024 8656 0.250513 ATCGCCAAGGTGTTCCTCTC 59.749 55.000 0.00 0.00 44.35 3.20
2025 8657 0.036010 CATCGCCAAGGTGTTCCTCT 60.036 55.000 0.00 0.00 44.35 3.69
2096 8729 5.957842 TGGCGATGTCTCAGTTTTAAATT 57.042 34.783 0.00 0.00 0.00 1.82
2098 8731 5.759506 TTTGGCGATGTCTCAGTTTTAAA 57.240 34.783 0.00 0.00 0.00 1.52
2105 8738 3.911989 GCATTTGGCGATGTCTCAG 57.088 52.632 0.00 0.00 0.00 3.35
2127 8760 1.656594 CGTCACTTCGACAACACACAA 59.343 47.619 0.00 0.00 45.70 3.33
2151 8784 0.881118 AAACATTGTAGTGGGCAGCG 59.119 50.000 0.00 0.00 0.00 5.18
2159 8792 4.495422 CTCCGACAGCTAAACATTGTAGT 58.505 43.478 0.00 0.00 0.00 2.73
2162 8795 2.301870 TCCTCCGACAGCTAAACATTGT 59.698 45.455 0.00 0.00 0.00 2.71
2177 8810 1.677637 GGCCCTTAGTGTCTCCTCCG 61.678 65.000 0.00 0.00 0.00 4.63
2179 8812 1.677637 CGGGCCCTTAGTGTCTCCTC 61.678 65.000 22.43 0.00 0.00 3.71
2181 8814 2.901042 CGGGCCCTTAGTGTCTCC 59.099 66.667 22.43 0.00 0.00 3.71
2183 8816 3.400054 GGCGGGCCCTTAGTGTCT 61.400 66.667 22.43 0.00 0.00 3.41
2190 8823 2.917227 CAAAAGTGGCGGGCCCTT 60.917 61.111 22.43 3.24 34.56 3.95
2195 8828 0.744281 ACAGAAACAAAAGTGGCGGG 59.256 50.000 0.00 0.00 0.00 6.13
2219 8852 6.806751 TCGTTTGGATGTTATTTTCAACCAA 58.193 32.000 0.00 0.00 42.80 3.67
2225 8858 5.321516 CGTCCTCGTTTGGATGTTATTTTC 58.678 41.667 0.00 0.00 38.52 2.29
2226 8859 4.155280 CCGTCCTCGTTTGGATGTTATTTT 59.845 41.667 11.09 0.00 40.56 1.82
2237 8870 1.589803 ACCTTTTCCGTCCTCGTTTG 58.410 50.000 0.00 0.00 35.01 2.93
2242 8875 3.676093 AGATTCAACCTTTTCCGTCCTC 58.324 45.455 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.