Multiple sequence alignment - TraesCS2B01G475200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G475200 chr2B 100.000 2713 0 0 1 2713 672319060 672321772 0.000000e+00 5011.0
1 TraesCS2B01G475200 chr2B 99.140 465 4 0 2249 2713 658484450 658483986 0.000000e+00 837.0
2 TraesCS2B01G475200 chr2B 85.614 855 58 21 94 890 672086019 672086866 0.000000e+00 837.0
3 TraesCS2B01G475200 chr2B 82.994 688 79 21 1083 1746 672646576 672647249 3.010000e-164 588.0
4 TraesCS2B01G475200 chr2B 84.391 583 70 9 1083 1645 673050933 673051514 1.100000e-153 553.0
5 TraesCS2B01G475200 chr2B 77.954 948 123 55 875 1758 672530606 672531531 5.180000e-142 514.0
6 TraesCS2B01G475200 chr2B 99.180 244 0 2 1759 2001 672320757 672320999 3.210000e-119 438.0
7 TraesCS2B01G475200 chr2B 99.180 244 0 2 1698 1940 672320818 672321060 3.210000e-119 438.0
8 TraesCS2B01G475200 chr2B 96.721 244 7 1 887 1130 672098819 672099061 3.250000e-109 405.0
9 TraesCS2B01G475200 chr2B 99.448 181 0 1 1820 1999 672320757 672320937 7.240000e-86 327.0
10 TraesCS2B01G475200 chr2B 99.448 181 0 1 1698 1878 672320879 672321058 7.240000e-86 327.0
11 TraesCS2B01G475200 chr2B 100.000 122 0 0 1880 2001 672320757 672320878 2.720000e-55 226.0
12 TraesCS2B01G475200 chr2B 100.000 122 0 0 1698 1819 672320939 672321060 2.720000e-55 226.0
13 TraesCS2B01G475200 chr2B 90.141 142 13 1 1941 2081 672531471 672531612 1.660000e-42 183.0
14 TraesCS2B01G475200 chr2B 87.421 159 17 3 1542 1699 673093395 673093551 2.150000e-41 180.0
15 TraesCS2B01G475200 chr2B 82.667 150 22 3 874 1023 672081072 672081217 2.190000e-26 130.0
16 TraesCS2B01G475200 chr2B 100.000 61 0 0 1941 2001 672320757 672320817 2.210000e-21 113.0
17 TraesCS2B01G475200 chr2B 100.000 61 0 0 1698 1758 672321000 672321060 2.210000e-21 113.0
18 TraesCS2B01G475200 chr2B 100.000 55 0 0 2086 2140 658484504 658484450 4.780000e-18 102.0
19 TraesCS2B01G475200 chr2B 96.721 61 2 0 1759 1819 672531471 672531531 4.780000e-18 102.0
20 TraesCS2B01G475200 chr2B 96.721 61 2 0 1880 1940 672531471 672531531 4.780000e-18 102.0
21 TraesCS2B01G475200 chr2B 98.214 56 1 0 1820 1875 672531471 672531526 6.180000e-17 99.0
22 TraesCS2B01G475200 chr2B 86.364 66 4 4 1543 1606 672861000 672861062 1.740000e-07 67.6
23 TraesCS2B01G475200 chr2D 87.183 1537 128 35 265 1758 562448429 562449939 0.000000e+00 1683.0
24 TraesCS2B01G475200 chr2D 84.296 554 56 19 1083 1609 562807911 562808460 1.860000e-141 512.0
25 TraesCS2B01G475200 chr2D 85.513 497 58 9 1084 1566 562754098 562754594 8.670000e-140 507.0
26 TraesCS2B01G475200 chr2D 82.401 608 65 23 877 1452 562581062 562581659 2.430000e-135 492.0
27 TraesCS2B01G475200 chr2D 88.410 371 41 2 1084 1452 562839672 562840042 1.920000e-121 446.0
28 TraesCS2B01G475200 chr2D 88.108 370 44 0 1083 1452 562785598 562785967 8.920000e-120 440.0
29 TraesCS2B01G475200 chr2D 83.459 266 24 10 1 252 562448111 562448370 2.100000e-56 230.0
30 TraesCS2B01G475200 chr2D 92.254 142 10 1 1941 2081 562449879 562450020 1.650000e-47 200.0
31 TraesCS2B01G475200 chr5B 95.024 623 27 1 2091 2713 562301673 562302291 0.000000e+00 976.0
32 TraesCS2B01G475200 chr2A 84.646 762 77 21 1027 1758 703105741 703106492 0.000000e+00 723.0
33 TraesCS2B01G475200 chr2A 90.948 464 37 3 413 874 703105065 703105525 1.070000e-173 619.0
34 TraesCS2B01G475200 chr2A 90.960 354 32 0 1083 1436 703291238 703291591 6.800000e-131 477.0
35 TraesCS2B01G475200 chr2A 94.326 141 8 0 1941 2081 703106432 703106572 1.640000e-52 217.0
36 TraesCS2B01G475200 chr2A 76.961 408 40 24 13 375 703104662 703105060 1.660000e-42 183.0
37 TraesCS2B01G475200 chr2A 79.608 255 30 14 778 1017 703095049 703095296 2.160000e-36 163.0
38 TraesCS2B01G475200 chr2A 85.065 154 12 8 877 1019 703110765 703110918 2.180000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G475200 chr2B 672319060 672321772 2712 False 802.111111 5011 99.695111 1 2713 9 chr2B.!!$F8 2712
1 TraesCS2B01G475200 chr2B 672086019 672086866 847 False 837.000000 837 85.614000 94 890 1 chr2B.!!$F2 796
2 TraesCS2B01G475200 chr2B 672646576 672647249 673 False 588.000000 588 82.994000 1083 1746 1 chr2B.!!$F4 663
3 TraesCS2B01G475200 chr2B 673050933 673051514 581 False 553.000000 553 84.391000 1083 1645 1 chr2B.!!$F6 562
4 TraesCS2B01G475200 chr2B 658483986 658484504 518 True 469.500000 837 99.570000 2086 2713 2 chr2B.!!$R1 627
5 TraesCS2B01G475200 chr2D 562448111 562450020 1909 False 704.333333 1683 87.632000 1 2081 3 chr2D.!!$F6 2080
6 TraesCS2B01G475200 chr2D 562807911 562808460 549 False 512.000000 512 84.296000 1083 1609 1 chr2D.!!$F4 526
7 TraesCS2B01G475200 chr2D 562581062 562581659 597 False 492.000000 492 82.401000 877 1452 1 chr2D.!!$F1 575
8 TraesCS2B01G475200 chr5B 562301673 562302291 618 False 976.000000 976 95.024000 2091 2713 1 chr5B.!!$F1 622
9 TraesCS2B01G475200 chr2A 703104662 703106572 1910 False 435.500000 723 86.720250 13 2081 4 chr2A.!!$F4 2068

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
132 155 0.035176 TCCTCGGTTAAACAACCCGG 59.965 55.0 0.0 0.0 39.68 5.73 F
1019 1223 0.179029 ACCAAACTCACCCACCTTCG 60.179 55.0 0.0 0.0 0.00 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1350 1606 0.176680 CGATGGACACCTTCCTGGAG 59.823 60.0 0.00 0.0 46.10 3.86 R
2187 2533 1.906105 AATTCGAAGTGCGGGGGCTA 61.906 55.0 3.35 0.0 41.33 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.331265 GGCATGGAAACCTATCGGC 58.669 57.895 0.00 0.00 0.00 5.54
22 23 0.393077 ATGGAAACCTATCGGCGGAG 59.607 55.000 7.21 4.77 0.00 4.63
61 62 2.483014 TAATTACGGCCTGCAACTGT 57.517 45.000 0.00 6.17 0.00 3.55
62 63 2.483014 AATTACGGCCTGCAACTGTA 57.517 45.000 0.00 4.37 0.00 2.74
63 64 2.483014 ATTACGGCCTGCAACTGTAA 57.517 45.000 18.26 18.26 41.71 2.41
64 65 1.515081 TTACGGCCTGCAACTGTAAC 58.485 50.000 14.01 0.00 34.69 2.50
65 66 0.682852 TACGGCCTGCAACTGTAACT 59.317 50.000 0.00 0.00 0.00 2.24
66 67 0.179029 ACGGCCTGCAACTGTAACTT 60.179 50.000 0.00 0.00 0.00 2.66
67 68 0.951558 CGGCCTGCAACTGTAACTTT 59.048 50.000 0.00 0.00 0.00 2.66
68 69 2.147958 CGGCCTGCAACTGTAACTTTA 58.852 47.619 0.00 0.00 0.00 1.85
69 70 2.095919 CGGCCTGCAACTGTAACTTTAC 60.096 50.000 0.00 0.00 0.00 2.01
70 71 3.146847 GGCCTGCAACTGTAACTTTACT 58.853 45.455 0.00 0.00 34.77 2.24
71 72 3.568430 GGCCTGCAACTGTAACTTTACTT 59.432 43.478 0.00 0.00 34.77 2.24
74 75 5.560953 GCCTGCAACTGTAACTTTACTTCAG 60.561 44.000 1.04 0.00 34.77 3.02
81 82 4.980573 TGTAACTTTACTTCAGGGTGCAT 58.019 39.130 0.00 0.00 34.77 3.96
129 152 1.804748 CAGCTCCTCGGTTAAACAACC 59.195 52.381 0.00 0.00 39.44 3.77
131 154 1.435577 CTCCTCGGTTAAACAACCCG 58.564 55.000 1.09 0.00 39.68 5.28
132 155 0.035176 TCCTCGGTTAAACAACCCGG 59.965 55.000 0.00 0.00 39.68 5.73
162 185 1.600485 CCCAAAGTTTTCAGCGTACGT 59.400 47.619 17.90 0.00 0.00 3.57
163 186 2.801679 CCCAAAGTTTTCAGCGTACGTA 59.198 45.455 17.90 0.00 0.00 3.57
164 187 3.363280 CCCAAAGTTTTCAGCGTACGTAC 60.363 47.826 17.90 15.90 0.00 3.67
241 285 1.301423 AGAACTTTACGCGTGCCAAA 58.699 45.000 24.59 13.81 0.00 3.28
252 318 1.101049 CGTGCCAAACTCCCAGTGTT 61.101 55.000 0.00 0.00 0.00 3.32
253 319 0.385390 GTGCCAAACTCCCAGTGTTG 59.615 55.000 0.00 0.00 0.00 3.33
256 322 1.762708 CCAAACTCCCAGTGTTGTGT 58.237 50.000 0.00 0.00 0.00 3.72
257 323 2.099405 CCAAACTCCCAGTGTTGTGTT 58.901 47.619 0.00 0.00 0.00 3.32
258 324 2.159254 CCAAACTCCCAGTGTTGTGTTG 60.159 50.000 0.00 0.00 0.00 3.33
259 325 2.491693 CAAACTCCCAGTGTTGTGTTGT 59.508 45.455 0.00 0.00 0.00 3.32
262 328 2.213499 CTCCCAGTGTTGTGTTGTCTC 58.787 52.381 0.00 0.00 0.00 3.36
263 329 1.557371 TCCCAGTGTTGTGTTGTCTCA 59.443 47.619 0.00 0.00 0.00 3.27
317 407 1.672854 CGGATGGAGCACCCGACTAA 61.673 60.000 0.00 0.00 45.58 2.24
320 410 0.469917 ATGGAGCACCCGACTAATGG 59.530 55.000 0.00 0.00 37.93 3.16
350 440 3.498397 GTGGCATCGAACTCTTTTTCTGA 59.502 43.478 0.00 0.00 0.00 3.27
351 441 3.498397 TGGCATCGAACTCTTTTTCTGAC 59.502 43.478 0.00 0.00 0.00 3.51
502 607 3.872182 TGCGTTTGTTTGTTCTAGTGCTA 59.128 39.130 0.00 0.00 0.00 3.49
555 690 8.331730 TGAAGTTACTTTAATCCAAAGCTACC 57.668 34.615 0.00 0.00 46.50 3.18
709 861 1.068194 CCTGTCCTAATCGATCGCCTC 60.068 57.143 11.09 0.00 0.00 4.70
746 898 3.759086 GACATGGACACTCTACAGAGACA 59.241 47.826 13.13 6.68 44.74 3.41
922 1105 2.568090 CGGACCATGGTTTGCAGC 59.432 61.111 20.85 4.46 0.00 5.25
960 1158 3.423154 GCTTTCCCGTGCTCCGTG 61.423 66.667 0.00 0.00 33.66 4.94
1019 1223 0.179029 ACCAAACTCACCCACCTTCG 60.179 55.000 0.00 0.00 0.00 3.79
1023 1227 3.636231 CTCACCCACCTTCGCCCA 61.636 66.667 0.00 0.00 0.00 5.36
1024 1228 2.933287 TCACCCACCTTCGCCCAT 60.933 61.111 0.00 0.00 0.00 4.00
1025 1229 2.035626 CACCCACCTTCGCCCATT 59.964 61.111 0.00 0.00 0.00 3.16
1081 1325 0.534412 CTCTCCCCAGCCATATAGCG 59.466 60.000 0.00 0.00 38.01 4.26
1102 1346 4.854924 CCATGGCGGCATCGGTGA 62.855 66.667 23.19 0.00 36.79 4.02
1404 1674 1.466866 GGCCGCGGAAAGTATTGTTTC 60.467 52.381 33.48 5.54 35.95 2.78
1447 1722 5.532406 TCTGAAGAAAACAGCAGCTGTATTT 59.468 36.000 28.48 25.72 44.62 1.40
1462 1769 5.645497 AGCTGTATTTTGAATGTCTCTGTCC 59.355 40.000 0.00 0.00 0.00 4.02
1484 1791 4.704833 GGCCGGTGCTCTTGCTGA 62.705 66.667 1.90 0.00 40.48 4.26
1488 1796 1.597854 CGGTGCTCTTGCTGAACCA 60.598 57.895 0.00 0.00 40.48 3.67
1490 1798 0.250467 GGTGCTCTTGCTGAACCAGA 60.250 55.000 0.00 0.00 40.48 3.86
1498 1806 1.203441 TGCTGAACCAGAGGAGGCAT 61.203 55.000 0.00 0.00 32.44 4.40
1516 1832 2.547640 ATCAGATGCACCTTGGCGCT 62.548 55.000 7.64 0.00 36.28 5.92
1587 1921 2.354805 GCCTGTAGATTTCCCTCACGTT 60.355 50.000 0.00 0.00 0.00 3.99
1648 1990 1.001048 TGTACTTGTTCTCGGTCGGTG 60.001 52.381 0.00 0.00 0.00 4.94
1659 2001 2.894879 GTCGGTGTGTGCTGTGCA 60.895 61.111 0.00 0.00 35.60 4.57
1749 2094 9.850628 CAGACATGATTCACAATTTGTTTATCT 57.149 29.630 15.97 4.31 0.00 1.98
1764 2109 9.829507 ATTTGTTTATCTTCAATTTGAACACCA 57.170 25.926 7.74 0.00 32.21 4.17
1765 2110 9.829507 TTTGTTTATCTTCAATTTGAACACCAT 57.170 25.926 7.74 1.74 32.21 3.55
1766 2111 8.815141 TGTTTATCTTCAATTTGAACACCATG 57.185 30.769 7.74 0.00 32.21 3.66
1767 2112 7.871973 TGTTTATCTTCAATTTGAACACCATGG 59.128 33.333 11.19 11.19 32.21 3.66
1768 2113 7.773489 TTATCTTCAATTTGAACACCATGGA 57.227 32.000 21.47 3.10 32.21 3.41
1769 2114 6.862469 ATCTTCAATTTGAACACCATGGAT 57.138 33.333 21.47 2.53 32.21 3.41
1770 2115 6.271488 TCTTCAATTTGAACACCATGGATC 57.729 37.500 21.47 13.86 32.21 3.36
1771 2116 6.012113 TCTTCAATTTGAACACCATGGATCT 58.988 36.000 21.47 0.62 32.21 2.75
1772 2117 5.648178 TCAATTTGAACACCATGGATCTG 57.352 39.130 21.47 9.24 0.00 2.90
1773 2118 5.323581 TCAATTTGAACACCATGGATCTGA 58.676 37.500 21.47 9.97 0.00 3.27
1774 2119 5.774184 TCAATTTGAACACCATGGATCTGAA 59.226 36.000 21.47 12.22 0.00 3.02
1775 2120 5.909621 ATTTGAACACCATGGATCTGAAG 57.090 39.130 21.47 1.41 0.00 3.02
1776 2121 4.639078 TTGAACACCATGGATCTGAAGA 57.361 40.909 21.47 0.00 0.00 2.87
1777 2122 4.212143 TGAACACCATGGATCTGAAGAG 57.788 45.455 21.47 0.00 0.00 2.85
1778 2123 3.840078 TGAACACCATGGATCTGAAGAGA 59.160 43.478 21.47 0.00 0.00 3.10
1779 2124 4.081254 TGAACACCATGGATCTGAAGAGAG 60.081 45.833 21.47 0.00 0.00 3.20
1780 2125 2.170187 ACACCATGGATCTGAAGAGAGC 59.830 50.000 21.47 0.00 33.54 4.09
1781 2126 2.169978 CACCATGGATCTGAAGAGAGCA 59.830 50.000 21.47 0.00 36.24 4.26
1782 2127 2.842496 ACCATGGATCTGAAGAGAGCAA 59.158 45.455 21.47 0.00 36.24 3.91
1783 2128 3.204526 CCATGGATCTGAAGAGAGCAAC 58.795 50.000 5.56 0.00 36.24 4.17
1784 2129 3.204526 CATGGATCTGAAGAGAGCAACC 58.795 50.000 0.00 0.00 36.24 3.77
1785 2130 2.259917 TGGATCTGAAGAGAGCAACCA 58.740 47.619 0.00 0.00 36.24 3.67
1786 2131 2.235650 TGGATCTGAAGAGAGCAACCAG 59.764 50.000 0.00 0.00 36.24 4.00
1787 2132 2.499289 GGATCTGAAGAGAGCAACCAGA 59.501 50.000 0.00 0.00 36.24 3.86
1788 2133 3.520569 GATCTGAAGAGAGCAACCAGAC 58.479 50.000 0.00 0.00 36.80 3.51
1789 2134 2.319844 TCTGAAGAGAGCAACCAGACA 58.680 47.619 0.00 0.00 0.00 3.41
1790 2135 2.902486 TCTGAAGAGAGCAACCAGACAT 59.098 45.455 0.00 0.00 0.00 3.06
1791 2136 3.001414 CTGAAGAGAGCAACCAGACATG 58.999 50.000 0.00 0.00 0.00 3.21
1792 2137 2.634453 TGAAGAGAGCAACCAGACATGA 59.366 45.455 0.00 0.00 0.00 3.07
1793 2138 3.262660 TGAAGAGAGCAACCAGACATGAT 59.737 43.478 0.00 0.00 0.00 2.45
1794 2139 3.996921 AGAGAGCAACCAGACATGATT 57.003 42.857 0.00 0.00 0.00 2.57
1795 2140 3.871485 AGAGAGCAACCAGACATGATTC 58.129 45.455 0.00 0.00 0.00 2.52
1796 2141 3.262660 AGAGAGCAACCAGACATGATTCA 59.737 43.478 0.00 0.00 0.00 2.57
1797 2142 3.341823 AGAGCAACCAGACATGATTCAC 58.658 45.455 0.00 0.00 0.00 3.18
1798 2143 3.076621 GAGCAACCAGACATGATTCACA 58.923 45.455 0.00 0.00 0.00 3.58
1799 2144 3.489355 AGCAACCAGACATGATTCACAA 58.511 40.909 0.00 0.00 0.00 3.33
1800 2145 4.084287 AGCAACCAGACATGATTCACAAT 58.916 39.130 0.00 0.00 0.00 2.71
1801 2146 4.525487 AGCAACCAGACATGATTCACAATT 59.475 37.500 0.00 0.00 0.00 2.32
1802 2147 5.011329 AGCAACCAGACATGATTCACAATTT 59.989 36.000 0.00 0.00 0.00 1.82
1803 2148 5.119588 GCAACCAGACATGATTCACAATTTG 59.880 40.000 0.00 0.00 0.00 2.32
1804 2149 6.218019 CAACCAGACATGATTCACAATTTGT 58.782 36.000 0.00 0.00 0.00 2.83
1805 2150 6.409524 ACCAGACATGATTCACAATTTGTT 57.590 33.333 0.00 0.00 0.00 2.83
1806 2151 6.819284 ACCAGACATGATTCACAATTTGTTT 58.181 32.000 0.00 0.00 0.00 2.83
1807 2152 7.950512 ACCAGACATGATTCACAATTTGTTTA 58.049 30.769 0.00 0.00 0.00 2.01
1808 2153 8.587608 ACCAGACATGATTCACAATTTGTTTAT 58.412 29.630 0.00 0.00 0.00 1.40
1809 2154 9.079833 CCAGACATGATTCACAATTTGTTTATC 57.920 33.333 0.00 6.51 0.00 1.75
1810 2155 9.850628 CAGACATGATTCACAATTTGTTTATCT 57.149 29.630 15.97 4.31 0.00 1.98
1825 2170 9.829507 ATTTGTTTATCTTCAATTTGAACACCA 57.170 25.926 7.74 0.00 32.21 4.17
1826 2171 9.829507 TTTGTTTATCTTCAATTTGAACACCAT 57.170 25.926 7.74 1.74 32.21 3.55
1827 2172 8.815141 TGTTTATCTTCAATTTGAACACCATG 57.185 30.769 7.74 0.00 32.21 3.66
1828 2173 7.871973 TGTTTATCTTCAATTTGAACACCATGG 59.128 33.333 11.19 11.19 32.21 3.66
1829 2174 7.773489 TTATCTTCAATTTGAACACCATGGA 57.227 32.000 21.47 3.10 32.21 3.41
1830 2175 6.862469 ATCTTCAATTTGAACACCATGGAT 57.138 33.333 21.47 2.53 32.21 3.41
1831 2176 6.271488 TCTTCAATTTGAACACCATGGATC 57.729 37.500 21.47 13.86 32.21 3.36
1832 2177 6.012113 TCTTCAATTTGAACACCATGGATCT 58.988 36.000 21.47 0.62 32.21 2.75
1833 2178 5.648178 TCAATTTGAACACCATGGATCTG 57.352 39.130 21.47 9.24 0.00 2.90
1834 2179 5.323581 TCAATTTGAACACCATGGATCTGA 58.676 37.500 21.47 9.97 0.00 3.27
1835 2180 5.774184 TCAATTTGAACACCATGGATCTGAA 59.226 36.000 21.47 12.22 0.00 3.02
1836 2181 5.909621 ATTTGAACACCATGGATCTGAAG 57.090 39.130 21.47 1.41 0.00 3.02
1837 2182 4.639078 TTGAACACCATGGATCTGAAGA 57.361 40.909 21.47 0.00 0.00 2.87
1838 2183 4.212143 TGAACACCATGGATCTGAAGAG 57.788 45.455 21.47 0.00 0.00 2.85
1839 2184 3.840078 TGAACACCATGGATCTGAAGAGA 59.160 43.478 21.47 0.00 0.00 3.10
1840 2185 4.081254 TGAACACCATGGATCTGAAGAGAG 60.081 45.833 21.47 0.00 0.00 3.20
1841 2186 2.170187 ACACCATGGATCTGAAGAGAGC 59.830 50.000 21.47 0.00 33.54 4.09
1842 2187 2.169978 CACCATGGATCTGAAGAGAGCA 59.830 50.000 21.47 0.00 36.24 4.26
1843 2188 2.842496 ACCATGGATCTGAAGAGAGCAA 59.158 45.455 21.47 0.00 36.24 3.91
1844 2189 3.204526 CCATGGATCTGAAGAGAGCAAC 58.795 50.000 5.56 0.00 36.24 4.17
1845 2190 3.204526 CATGGATCTGAAGAGAGCAACC 58.795 50.000 0.00 0.00 36.24 3.77
1846 2191 2.259917 TGGATCTGAAGAGAGCAACCA 58.740 47.619 0.00 0.00 36.24 3.67
1847 2192 2.235650 TGGATCTGAAGAGAGCAACCAG 59.764 50.000 0.00 0.00 36.24 4.00
1848 2193 2.499289 GGATCTGAAGAGAGCAACCAGA 59.501 50.000 0.00 0.00 36.24 3.86
1849 2194 3.520569 GATCTGAAGAGAGCAACCAGAC 58.479 50.000 0.00 0.00 36.80 3.51
1850 2195 2.319844 TCTGAAGAGAGCAACCAGACA 58.680 47.619 0.00 0.00 0.00 3.41
1851 2196 2.902486 TCTGAAGAGAGCAACCAGACAT 59.098 45.455 0.00 0.00 0.00 3.06
1852 2197 3.001414 CTGAAGAGAGCAACCAGACATG 58.999 50.000 0.00 0.00 0.00 3.21
1853 2198 2.634453 TGAAGAGAGCAACCAGACATGA 59.366 45.455 0.00 0.00 0.00 3.07
1854 2199 3.262660 TGAAGAGAGCAACCAGACATGAT 59.737 43.478 0.00 0.00 0.00 2.45
1855 2200 3.996921 AGAGAGCAACCAGACATGATT 57.003 42.857 0.00 0.00 0.00 2.57
1856 2201 3.871485 AGAGAGCAACCAGACATGATTC 58.129 45.455 0.00 0.00 0.00 2.52
1857 2202 3.262660 AGAGAGCAACCAGACATGATTCA 59.737 43.478 0.00 0.00 0.00 2.57
1858 2203 3.341823 AGAGCAACCAGACATGATTCAC 58.658 45.455 0.00 0.00 0.00 3.18
1859 2204 3.076621 GAGCAACCAGACATGATTCACA 58.923 45.455 0.00 0.00 0.00 3.58
1860 2205 3.489355 AGCAACCAGACATGATTCACAA 58.511 40.909 0.00 0.00 0.00 3.33
1861 2206 4.084287 AGCAACCAGACATGATTCACAAT 58.916 39.130 0.00 0.00 0.00 2.71
1862 2207 4.525487 AGCAACCAGACATGATTCACAATT 59.475 37.500 0.00 0.00 0.00 2.32
1863 2208 5.011329 AGCAACCAGACATGATTCACAATTT 59.989 36.000 0.00 0.00 0.00 1.82
1864 2209 5.119588 GCAACCAGACATGATTCACAATTTG 59.880 40.000 0.00 0.00 0.00 2.32
1865 2210 6.218019 CAACCAGACATGATTCACAATTTGT 58.782 36.000 0.00 0.00 0.00 2.83
1866 2211 6.409524 ACCAGACATGATTCACAATTTGTT 57.590 33.333 0.00 0.00 0.00 2.83
1867 2212 6.819284 ACCAGACATGATTCACAATTTGTTT 58.181 32.000 0.00 0.00 0.00 2.83
1868 2213 7.950512 ACCAGACATGATTCACAATTTGTTTA 58.049 30.769 0.00 0.00 0.00 2.01
1869 2214 8.587608 ACCAGACATGATTCACAATTTGTTTAT 58.412 29.630 0.00 0.00 0.00 1.40
1870 2215 9.079833 CCAGACATGATTCACAATTTGTTTATC 57.920 33.333 0.00 6.51 0.00 1.75
1871 2216 9.850628 CAGACATGATTCACAATTTGTTTATCT 57.149 29.630 15.97 4.31 0.00 1.98
1885 2230 9.829507 AATTTGTTTATCTTCAATTGAACACCA 57.170 25.926 16.91 5.65 0.00 4.17
1887 2232 8.815141 TTGTTTATCTTCAATTGAACACCATG 57.185 30.769 16.91 6.65 0.00 3.66
1888 2233 7.377398 TGTTTATCTTCAATTGAACACCATGG 58.623 34.615 16.91 11.19 0.00 3.66
1889 2234 7.232330 TGTTTATCTTCAATTGAACACCATGGA 59.768 33.333 21.47 11.02 0.00 3.41
1890 2235 7.959658 TTATCTTCAATTGAACACCATGGAT 57.040 32.000 21.47 16.60 0.00 3.41
1891 2236 5.902613 TCTTCAATTGAACACCATGGATC 57.097 39.130 21.47 13.86 0.00 3.36
1892 2237 5.573219 TCTTCAATTGAACACCATGGATCT 58.427 37.500 21.47 0.62 0.00 2.75
1893 2238 5.416639 TCTTCAATTGAACACCATGGATCTG 59.583 40.000 21.47 9.24 0.00 2.90
1894 2239 4.920999 TCAATTGAACACCATGGATCTGA 58.079 39.130 21.47 10.29 0.00 3.27
1895 2240 5.323581 TCAATTGAACACCATGGATCTGAA 58.676 37.500 21.47 5.74 0.00 3.02
1896 2241 5.416639 TCAATTGAACACCATGGATCTGAAG 59.583 40.000 21.47 6.30 0.00 3.02
1897 2242 4.639078 TTGAACACCATGGATCTGAAGA 57.361 40.909 21.47 0.00 0.00 2.87
1898 2243 4.212143 TGAACACCATGGATCTGAAGAG 57.788 45.455 21.47 0.00 0.00 2.85
1899 2244 3.840078 TGAACACCATGGATCTGAAGAGA 59.160 43.478 21.47 0.00 0.00 3.10
1900 2245 4.081254 TGAACACCATGGATCTGAAGAGAG 60.081 45.833 21.47 0.00 0.00 3.20
1901 2246 2.170187 ACACCATGGATCTGAAGAGAGC 59.830 50.000 21.47 0.00 33.54 4.09
1902 2247 2.169978 CACCATGGATCTGAAGAGAGCA 59.830 50.000 21.47 0.00 36.24 4.26
1903 2248 2.842496 ACCATGGATCTGAAGAGAGCAA 59.158 45.455 21.47 0.00 36.24 3.91
1904 2249 3.204526 CCATGGATCTGAAGAGAGCAAC 58.795 50.000 5.56 0.00 36.24 4.17
1905 2250 3.204526 CATGGATCTGAAGAGAGCAACC 58.795 50.000 0.00 0.00 36.24 3.77
1906 2251 2.259917 TGGATCTGAAGAGAGCAACCA 58.740 47.619 0.00 0.00 36.24 3.67
1907 2252 2.235650 TGGATCTGAAGAGAGCAACCAG 59.764 50.000 0.00 0.00 36.24 4.00
1908 2253 2.499289 GGATCTGAAGAGAGCAACCAGA 59.501 50.000 0.00 0.00 36.24 3.86
1909 2254 3.520569 GATCTGAAGAGAGCAACCAGAC 58.479 50.000 0.00 0.00 36.80 3.51
1910 2255 2.319844 TCTGAAGAGAGCAACCAGACA 58.680 47.619 0.00 0.00 0.00 3.41
1911 2256 2.902486 TCTGAAGAGAGCAACCAGACAT 59.098 45.455 0.00 0.00 0.00 3.06
1912 2257 3.001414 CTGAAGAGAGCAACCAGACATG 58.999 50.000 0.00 0.00 0.00 3.21
1913 2258 2.634453 TGAAGAGAGCAACCAGACATGA 59.366 45.455 0.00 0.00 0.00 3.07
1914 2259 3.262660 TGAAGAGAGCAACCAGACATGAT 59.737 43.478 0.00 0.00 0.00 2.45
1915 2260 3.996921 AGAGAGCAACCAGACATGATT 57.003 42.857 0.00 0.00 0.00 2.57
1916 2261 3.871485 AGAGAGCAACCAGACATGATTC 58.129 45.455 0.00 0.00 0.00 2.52
1917 2262 3.262660 AGAGAGCAACCAGACATGATTCA 59.737 43.478 0.00 0.00 0.00 2.57
1918 2263 3.341823 AGAGCAACCAGACATGATTCAC 58.658 45.455 0.00 0.00 0.00 3.18
1919 2264 3.076621 GAGCAACCAGACATGATTCACA 58.923 45.455 0.00 0.00 0.00 3.58
1920 2265 3.489355 AGCAACCAGACATGATTCACAA 58.511 40.909 0.00 0.00 0.00 3.33
1921 2266 4.084287 AGCAACCAGACATGATTCACAAT 58.916 39.130 0.00 0.00 0.00 2.71
1922 2267 4.525487 AGCAACCAGACATGATTCACAATT 59.475 37.500 0.00 0.00 0.00 2.32
1923 2268 5.011329 AGCAACCAGACATGATTCACAATTT 59.989 36.000 0.00 0.00 0.00 1.82
1924 2269 5.119588 GCAACCAGACATGATTCACAATTTG 59.880 40.000 0.00 0.00 0.00 2.32
1925 2270 6.218019 CAACCAGACATGATTCACAATTTGT 58.782 36.000 0.00 0.00 0.00 2.83
1926 2271 6.409524 ACCAGACATGATTCACAATTTGTT 57.590 33.333 0.00 0.00 0.00 2.83
1927 2272 6.819284 ACCAGACATGATTCACAATTTGTTT 58.181 32.000 0.00 0.00 0.00 2.83
1928 2273 7.950512 ACCAGACATGATTCACAATTTGTTTA 58.049 30.769 0.00 0.00 0.00 2.01
1929 2274 8.587608 ACCAGACATGATTCACAATTTGTTTAT 58.412 29.630 0.00 0.00 0.00 1.40
1930 2275 9.079833 CCAGACATGATTCACAATTTGTTTATC 57.920 33.333 0.00 6.51 0.00 1.75
1931 2276 9.850628 CAGACATGATTCACAATTTGTTTATCT 57.149 29.630 15.97 4.31 0.00 1.98
1946 2291 9.829507 ATTTGTTTATCTTCAATTTGAACACCA 57.170 25.926 7.74 0.00 32.21 4.17
1947 2292 9.829507 TTTGTTTATCTTCAATTTGAACACCAT 57.170 25.926 7.74 1.74 32.21 3.55
1948 2293 8.815141 TGTTTATCTTCAATTTGAACACCATG 57.185 30.769 7.74 0.00 32.21 3.66
1949 2294 7.871973 TGTTTATCTTCAATTTGAACACCATGG 59.128 33.333 11.19 11.19 32.21 3.66
1950 2295 7.773489 TTATCTTCAATTTGAACACCATGGA 57.227 32.000 21.47 3.10 32.21 3.41
1951 2296 6.862469 ATCTTCAATTTGAACACCATGGAT 57.138 33.333 21.47 2.53 32.21 3.41
1952 2297 6.271488 TCTTCAATTTGAACACCATGGATC 57.729 37.500 21.47 13.86 32.21 3.36
1953 2298 6.012113 TCTTCAATTTGAACACCATGGATCT 58.988 36.000 21.47 0.62 32.21 2.75
1954 2299 5.648178 TCAATTTGAACACCATGGATCTG 57.352 39.130 21.47 9.24 0.00 2.90
1955 2300 5.323581 TCAATTTGAACACCATGGATCTGA 58.676 37.500 21.47 9.97 0.00 3.27
1956 2301 5.774184 TCAATTTGAACACCATGGATCTGAA 59.226 36.000 21.47 12.22 0.00 3.02
1957 2302 5.909621 ATTTGAACACCATGGATCTGAAG 57.090 39.130 21.47 1.41 0.00 3.02
1958 2303 4.639078 TTGAACACCATGGATCTGAAGA 57.361 40.909 21.47 0.00 0.00 2.87
1959 2304 4.212143 TGAACACCATGGATCTGAAGAG 57.788 45.455 21.47 0.00 0.00 2.85
1960 2305 3.840078 TGAACACCATGGATCTGAAGAGA 59.160 43.478 21.47 0.00 0.00 3.10
1961 2306 4.081254 TGAACACCATGGATCTGAAGAGAG 60.081 45.833 21.47 0.00 0.00 3.20
1962 2307 2.170187 ACACCATGGATCTGAAGAGAGC 59.830 50.000 21.47 0.00 33.54 4.09
1963 2308 2.169978 CACCATGGATCTGAAGAGAGCA 59.830 50.000 21.47 0.00 36.24 4.26
1964 2309 2.842496 ACCATGGATCTGAAGAGAGCAA 59.158 45.455 21.47 0.00 36.24 3.91
1965 2310 3.204526 CCATGGATCTGAAGAGAGCAAC 58.795 50.000 5.56 0.00 36.24 4.17
1966 2311 3.204526 CATGGATCTGAAGAGAGCAACC 58.795 50.000 0.00 0.00 36.24 3.77
1967 2312 2.259917 TGGATCTGAAGAGAGCAACCA 58.740 47.619 0.00 0.00 36.24 3.67
1968 2313 2.235650 TGGATCTGAAGAGAGCAACCAG 59.764 50.000 0.00 0.00 36.24 4.00
1969 2314 2.499289 GGATCTGAAGAGAGCAACCAGA 59.501 50.000 0.00 0.00 36.24 3.86
1970 2315 3.520569 GATCTGAAGAGAGCAACCAGAC 58.479 50.000 0.00 0.00 36.80 3.51
1971 2316 2.319844 TCTGAAGAGAGCAACCAGACA 58.680 47.619 0.00 0.00 0.00 3.41
1972 2317 2.902486 TCTGAAGAGAGCAACCAGACAT 59.098 45.455 0.00 0.00 0.00 3.06
1973 2318 3.001414 CTGAAGAGAGCAACCAGACATG 58.999 50.000 0.00 0.00 0.00 3.21
1974 2319 2.634453 TGAAGAGAGCAACCAGACATGA 59.366 45.455 0.00 0.00 0.00 3.07
1975 2320 3.262660 TGAAGAGAGCAACCAGACATGAT 59.737 43.478 0.00 0.00 0.00 2.45
1976 2321 3.996921 AGAGAGCAACCAGACATGATT 57.003 42.857 0.00 0.00 0.00 2.57
1977 2322 3.871485 AGAGAGCAACCAGACATGATTC 58.129 45.455 0.00 0.00 0.00 2.52
1978 2323 3.262660 AGAGAGCAACCAGACATGATTCA 59.737 43.478 0.00 0.00 0.00 2.57
1979 2324 3.341823 AGAGCAACCAGACATGATTCAC 58.658 45.455 0.00 0.00 0.00 3.18
1980 2325 3.076621 GAGCAACCAGACATGATTCACA 58.923 45.455 0.00 0.00 0.00 3.58
1981 2326 3.489355 AGCAACCAGACATGATTCACAA 58.511 40.909 0.00 0.00 0.00 3.33
1982 2327 4.084287 AGCAACCAGACATGATTCACAAT 58.916 39.130 0.00 0.00 0.00 2.71
1983 2328 4.525487 AGCAACCAGACATGATTCACAATT 59.475 37.500 0.00 0.00 0.00 2.32
1984 2329 5.011329 AGCAACCAGACATGATTCACAATTT 59.989 36.000 0.00 0.00 0.00 1.82
1985 2330 5.119588 GCAACCAGACATGATTCACAATTTG 59.880 40.000 0.00 0.00 0.00 2.32
1986 2331 6.218019 CAACCAGACATGATTCACAATTTGT 58.782 36.000 0.00 0.00 0.00 2.83
1987 2332 6.409524 ACCAGACATGATTCACAATTTGTT 57.590 33.333 0.00 0.00 0.00 2.83
1988 2333 6.819284 ACCAGACATGATTCACAATTTGTTT 58.181 32.000 0.00 0.00 0.00 2.83
1989 2334 7.950512 ACCAGACATGATTCACAATTTGTTTA 58.049 30.769 0.00 0.00 0.00 2.01
1990 2335 8.587608 ACCAGACATGATTCACAATTTGTTTAT 58.412 29.630 0.00 0.00 0.00 1.40
1991 2336 9.079833 CCAGACATGATTCACAATTTGTTTATC 57.920 33.333 0.00 6.51 0.00 1.75
2012 2357 1.902938 TCAATTTGGGTCGCATGTCA 58.097 45.000 0.00 0.00 0.00 3.58
2027 2372 3.726607 CATGTCAGCCCACTCTCTTATC 58.273 50.000 0.00 0.00 0.00 1.75
2030 2375 3.027412 GTCAGCCCACTCTCTTATCTCA 58.973 50.000 0.00 0.00 0.00 3.27
2066 2412 3.636679 TGGATCCTGTTTGGTTTTGTCA 58.363 40.909 14.23 0.00 37.07 3.58
2081 2427 0.248825 TGTCATTTTGCGTGCACACC 60.249 50.000 18.64 7.63 0.00 4.16
2082 2428 0.030638 GTCATTTTGCGTGCACACCT 59.969 50.000 18.64 0.00 0.00 4.00
2083 2429 1.265635 GTCATTTTGCGTGCACACCTA 59.734 47.619 18.64 0.90 0.00 3.08
2084 2430 2.095263 GTCATTTTGCGTGCACACCTAT 60.095 45.455 18.64 0.11 0.00 2.57
2144 2490 0.687354 CCGGCTACTCCCTATGCATT 59.313 55.000 3.54 0.00 0.00 3.56
2148 2494 3.406764 GGCTACTCCCTATGCATTTCAG 58.593 50.000 3.54 0.00 0.00 3.02
2197 2543 3.161450 GACCTGATAGCCCCCGCA 61.161 66.667 0.00 0.00 37.52 5.69
2226 2572 4.329545 GCACAGAACGCCCCAGGA 62.330 66.667 0.00 0.00 0.00 3.86
2237 2583 0.817654 GCCCCAGGAAAGCACATAAC 59.182 55.000 0.00 0.00 0.00 1.89
2305 2651 2.906354 AGCAAGAACACGAACAGACTT 58.094 42.857 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.811317 GCACGCCTGAAGACTCCG 60.811 66.667 0.00 0.00 0.00 4.63
22 23 2.049063 AGTCGCACGCCTGAAGAC 60.049 61.111 4.47 4.47 0.00 3.01
61 62 4.585879 GGATGCACCCTGAAGTAAAGTTA 58.414 43.478 0.00 0.00 0.00 2.24
62 63 3.421844 GGATGCACCCTGAAGTAAAGTT 58.578 45.455 0.00 0.00 0.00 2.66
63 64 3.073274 GGATGCACCCTGAAGTAAAGT 57.927 47.619 0.00 0.00 0.00 2.66
81 82 2.043349 TCATCGCCGGAAGAGGGA 60.043 61.111 5.05 2.99 0.00 4.20
86 87 1.227089 CTGGTCTCATCGCCGGAAG 60.227 63.158 5.05 0.00 33.04 3.46
88 89 3.838271 GCTGGTCTCATCGCCGGA 61.838 66.667 5.05 0.00 33.04 5.14
129 152 0.181350 CTTTGGGGAGAAGGATCCGG 59.819 60.000 5.98 0.00 40.56 5.14
131 154 3.458044 AAACTTTGGGGAGAAGGATCC 57.542 47.619 2.48 2.48 38.76 3.36
132 155 4.407365 TGAAAACTTTGGGGAGAAGGATC 58.593 43.478 0.00 0.00 0.00 3.36
162 185 5.194432 GACACTTGAGATCCACTCCTAGTA 58.806 45.833 0.00 0.00 44.34 1.82
163 186 4.020543 GACACTTGAGATCCACTCCTAGT 58.979 47.826 0.00 0.00 44.34 2.57
164 187 3.066064 CGACACTTGAGATCCACTCCTAG 59.934 52.174 0.00 0.00 44.34 3.02
241 285 1.559682 AGACAACACAACACTGGGAGT 59.440 47.619 0.00 0.00 0.00 3.85
252 318 1.300931 GCTCGCCTGAGACAACACA 60.301 57.895 0.00 0.00 45.57 3.72
253 319 0.671781 ATGCTCGCCTGAGACAACAC 60.672 55.000 0.00 0.00 45.57 3.32
256 322 1.742880 GCATGCTCGCCTGAGACAA 60.743 57.895 11.37 0.00 45.57 3.18
257 323 2.125391 GCATGCTCGCCTGAGACA 60.125 61.111 11.37 0.00 45.57 3.41
258 324 2.125391 TGCATGCTCGCCTGAGAC 60.125 61.111 20.33 0.00 45.57 3.36
259 325 2.125391 GTGCATGCTCGCCTGAGA 60.125 61.111 20.33 0.00 45.57 3.27
284 374 0.258774 CATCCGGGAATCTTTGGGGT 59.741 55.000 0.00 0.00 0.00 4.95
317 407 3.071874 TCGATGCCACTTCTTTTCCAT 57.928 42.857 0.00 0.00 0.00 3.41
320 410 3.748568 AGAGTTCGATGCCACTTCTTTTC 59.251 43.478 0.00 0.00 0.00 2.29
472 577 1.754226 ACAAACAAACGCAAGGGACAT 59.246 42.857 0.00 0.00 46.39 3.06
502 607 5.424252 TCTTGGTGTCGATAATTAGGGTTCT 59.576 40.000 0.00 0.00 0.00 3.01
555 690 1.002251 GAGGGCGTCGAATCTACTCTG 60.002 57.143 0.00 0.00 0.00 3.35
709 861 4.865365 GTCCATGTCGACCTAGAGAAAAAG 59.135 45.833 14.12 0.00 0.00 2.27
746 898 3.587170 AACGGAGAGGGCTCGAGGT 62.587 63.158 15.58 0.00 42.25 3.85
800 952 1.006571 GACGAGAACGACAAGGGCA 60.007 57.895 0.00 0.00 42.66 5.36
828 980 0.876399 GTTGGCCGATGGTTAACGTT 59.124 50.000 5.88 5.88 0.00 3.99
922 1105 1.037030 ATTATTGGTGCACTGGCGGG 61.037 55.000 17.98 0.00 45.35 6.13
960 1158 0.106868 GGCGGGTATATATTGGGGGC 60.107 60.000 0.00 0.00 0.00 5.80
966 1170 1.492764 CGGGAGGGCGGGTATATATT 58.507 55.000 0.00 0.00 0.00 1.28
1019 1223 1.135170 GCTTGAGCTTCAGAAATGGGC 60.135 52.381 0.00 0.00 38.21 5.36
1023 1227 0.445436 CGCGCTTGAGCTTCAGAAAT 59.555 50.000 5.56 0.00 39.32 2.17
1024 1228 0.599991 TCGCGCTTGAGCTTCAGAAA 60.600 50.000 5.56 0.00 39.32 2.52
1025 1229 1.006220 TCGCGCTTGAGCTTCAGAA 60.006 52.632 5.56 0.00 39.32 3.02
1046 1286 0.252479 AGAGATGCTCCTTGTGGCAG 59.748 55.000 0.00 0.00 41.88 4.85
1056 1296 1.417288 ATGGCTGGGGAGAGATGCTC 61.417 60.000 0.00 0.00 43.17 4.26
1102 1346 1.374758 CGAAGAAGAAGGCGCAGGT 60.375 57.895 10.83 0.00 0.00 4.00
1251 1495 2.435586 AGGTGCATCTGCTCGTGC 60.436 61.111 0.00 1.71 42.66 5.34
1300 1544 3.114616 CGTGAACCTCTGCAGCCG 61.115 66.667 9.47 3.34 0.00 5.52
1350 1606 0.176680 CGATGGACACCTTCCTGGAG 59.823 60.000 0.00 0.00 46.10 3.86
1447 1722 1.550524 CGGAGGGACAGAGACATTCAA 59.449 52.381 0.00 0.00 0.00 2.69
1479 1786 1.203441 ATGCCTCCTCTGGTTCAGCA 61.203 55.000 0.00 0.00 0.00 4.41
1483 1790 1.198713 TCTGATGCCTCCTCTGGTTC 58.801 55.000 0.00 0.00 0.00 3.62
1484 1791 1.489649 CATCTGATGCCTCCTCTGGTT 59.510 52.381 4.47 0.00 0.00 3.67
1563 1897 2.027192 GTGAGGGAAATCTACAGGCACA 60.027 50.000 0.00 0.00 0.00 4.57
1587 1921 4.654091 GCTTAATTAGCTTGCCATGGAA 57.346 40.909 18.40 0.00 46.77 3.53
1622 1956 4.446385 CGACCGAGAACAAGTACAATTTCA 59.554 41.667 0.00 0.00 0.00 2.69
1648 1990 4.627611 ATAATTCATCTGCACAGCACAC 57.372 40.909 0.00 0.00 33.79 3.82
1689 2034 7.505585 TCTTCAGATCCATGGTGTTTACTTTTT 59.494 33.333 12.58 0.00 0.00 1.94
1749 2094 5.774184 TCAGATCCATGGTGTTCAAATTGAA 59.226 36.000 12.58 4.03 33.32 2.69
1750 2095 5.323581 TCAGATCCATGGTGTTCAAATTGA 58.676 37.500 12.58 4.98 0.00 2.57
1751 2096 5.648178 TCAGATCCATGGTGTTCAAATTG 57.352 39.130 12.58 2.85 0.00 2.32
1752 2097 6.012113 TCTTCAGATCCATGGTGTTCAAATT 58.988 36.000 12.58 0.00 0.00 1.82
1753 2098 5.573219 TCTTCAGATCCATGGTGTTCAAAT 58.427 37.500 12.58 0.00 0.00 2.32
1754 2099 4.984295 TCTTCAGATCCATGGTGTTCAAA 58.016 39.130 12.58 5.89 0.00 2.69
1755 2100 4.286808 TCTCTTCAGATCCATGGTGTTCAA 59.713 41.667 12.58 0.01 0.00 2.69
1756 2101 3.840078 TCTCTTCAGATCCATGGTGTTCA 59.160 43.478 12.58 0.00 0.00 3.18
1757 2102 4.440880 CTCTCTTCAGATCCATGGTGTTC 58.559 47.826 12.58 7.75 0.00 3.18
1758 2103 3.370315 GCTCTCTTCAGATCCATGGTGTT 60.370 47.826 12.58 0.00 0.00 3.32
1759 2104 2.170187 GCTCTCTTCAGATCCATGGTGT 59.830 50.000 12.58 1.34 0.00 4.16
1760 2105 2.169978 TGCTCTCTTCAGATCCATGGTG 59.830 50.000 12.58 2.68 0.00 4.17
1761 2106 2.475155 TGCTCTCTTCAGATCCATGGT 58.525 47.619 12.58 0.00 0.00 3.55
1762 2107 3.204526 GTTGCTCTCTTCAGATCCATGG 58.795 50.000 4.97 4.97 0.00 3.66
1763 2108 3.204526 GGTTGCTCTCTTCAGATCCATG 58.795 50.000 0.00 0.00 0.00 3.66
1764 2109 2.842496 TGGTTGCTCTCTTCAGATCCAT 59.158 45.455 0.00 0.00 0.00 3.41
1765 2110 2.235650 CTGGTTGCTCTCTTCAGATCCA 59.764 50.000 0.00 0.00 0.00 3.41
1766 2111 2.499289 TCTGGTTGCTCTCTTCAGATCC 59.501 50.000 0.00 0.00 30.58 3.36
1767 2112 3.056250 TGTCTGGTTGCTCTCTTCAGATC 60.056 47.826 0.00 0.00 36.93 2.75
1768 2113 2.902486 TGTCTGGTTGCTCTCTTCAGAT 59.098 45.455 0.00 0.00 36.93 2.90
1769 2114 2.319844 TGTCTGGTTGCTCTCTTCAGA 58.680 47.619 0.00 0.00 32.79 3.27
1770 2115 2.827800 TGTCTGGTTGCTCTCTTCAG 57.172 50.000 0.00 0.00 0.00 3.02
1771 2116 2.634453 TCATGTCTGGTTGCTCTCTTCA 59.366 45.455 0.00 0.00 0.00 3.02
1772 2117 3.325293 TCATGTCTGGTTGCTCTCTTC 57.675 47.619 0.00 0.00 0.00 2.87
1773 2118 3.996921 ATCATGTCTGGTTGCTCTCTT 57.003 42.857 0.00 0.00 0.00 2.85
1774 2119 3.262660 TGAATCATGTCTGGTTGCTCTCT 59.737 43.478 0.00 0.00 0.00 3.10
1775 2120 3.373439 GTGAATCATGTCTGGTTGCTCTC 59.627 47.826 0.00 0.00 0.00 3.20
1776 2121 3.244665 TGTGAATCATGTCTGGTTGCTCT 60.245 43.478 0.00 0.00 0.00 4.09
1777 2122 3.076621 TGTGAATCATGTCTGGTTGCTC 58.923 45.455 0.00 0.00 0.00 4.26
1778 2123 3.144657 TGTGAATCATGTCTGGTTGCT 57.855 42.857 0.00 0.00 0.00 3.91
1779 2124 3.921119 TTGTGAATCATGTCTGGTTGC 57.079 42.857 0.00 0.00 0.00 4.17
1780 2125 6.218019 ACAAATTGTGAATCATGTCTGGTTG 58.782 36.000 0.00 0.00 0.00 3.77
1781 2126 6.409524 ACAAATTGTGAATCATGTCTGGTT 57.590 33.333 0.00 0.00 0.00 3.67
1782 2127 6.409524 AACAAATTGTGAATCATGTCTGGT 57.590 33.333 0.00 0.00 0.00 4.00
1783 2128 8.991243 ATAAACAAATTGTGAATCATGTCTGG 57.009 30.769 0.00 0.00 0.00 3.86
1784 2129 9.850628 AGATAAACAAATTGTGAATCATGTCTG 57.149 29.630 17.61 0.00 29.60 3.51
1799 2144 9.829507 TGGTGTTCAAATTGAAGATAAACAAAT 57.170 25.926 8.88 0.00 37.00 2.32
1800 2145 9.829507 ATGGTGTTCAAATTGAAGATAAACAAA 57.170 25.926 8.88 0.00 37.00 2.83
1801 2146 9.258826 CATGGTGTTCAAATTGAAGATAAACAA 57.741 29.630 8.88 0.00 37.00 2.83
1802 2147 7.871973 CCATGGTGTTCAAATTGAAGATAAACA 59.128 33.333 8.88 4.96 37.00 2.83
1803 2148 8.087750 TCCATGGTGTTCAAATTGAAGATAAAC 58.912 33.333 12.58 0.00 37.00 2.01
1804 2149 8.187913 TCCATGGTGTTCAAATTGAAGATAAA 57.812 30.769 12.58 0.00 37.00 1.40
1805 2150 7.773489 TCCATGGTGTTCAAATTGAAGATAA 57.227 32.000 12.58 1.18 37.00 1.75
1806 2151 7.835682 AGATCCATGGTGTTCAAATTGAAGATA 59.164 33.333 12.58 2.34 37.00 1.98
1807 2152 6.666546 AGATCCATGGTGTTCAAATTGAAGAT 59.333 34.615 12.58 6.39 37.00 2.40
1808 2153 6.012113 AGATCCATGGTGTTCAAATTGAAGA 58.988 36.000 12.58 4.94 37.00 2.87
1809 2154 6.071784 TCAGATCCATGGTGTTCAAATTGAAG 60.072 38.462 12.58 0.00 37.00 3.02
1810 2155 5.774184 TCAGATCCATGGTGTTCAAATTGAA 59.226 36.000 12.58 4.03 33.32 2.69
1811 2156 5.323581 TCAGATCCATGGTGTTCAAATTGA 58.676 37.500 12.58 4.98 0.00 2.57
1812 2157 5.648178 TCAGATCCATGGTGTTCAAATTG 57.352 39.130 12.58 2.85 0.00 2.32
1813 2158 6.012113 TCTTCAGATCCATGGTGTTCAAATT 58.988 36.000 12.58 0.00 0.00 1.82
1814 2159 5.573219 TCTTCAGATCCATGGTGTTCAAAT 58.427 37.500 12.58 0.00 0.00 2.32
1815 2160 4.984295 TCTTCAGATCCATGGTGTTCAAA 58.016 39.130 12.58 5.89 0.00 2.69
1816 2161 4.286808 TCTCTTCAGATCCATGGTGTTCAA 59.713 41.667 12.58 0.01 0.00 2.69
1817 2162 3.840078 TCTCTTCAGATCCATGGTGTTCA 59.160 43.478 12.58 0.00 0.00 3.18
1818 2163 4.440880 CTCTCTTCAGATCCATGGTGTTC 58.559 47.826 12.58 7.75 0.00 3.18
1819 2164 3.370315 GCTCTCTTCAGATCCATGGTGTT 60.370 47.826 12.58 0.00 0.00 3.32
1820 2165 2.170187 GCTCTCTTCAGATCCATGGTGT 59.830 50.000 12.58 1.34 0.00 4.16
1821 2166 2.169978 TGCTCTCTTCAGATCCATGGTG 59.830 50.000 12.58 2.68 0.00 4.17
1822 2167 2.475155 TGCTCTCTTCAGATCCATGGT 58.525 47.619 12.58 0.00 0.00 3.55
1823 2168 3.204526 GTTGCTCTCTTCAGATCCATGG 58.795 50.000 4.97 4.97 0.00 3.66
1824 2169 3.204526 GGTTGCTCTCTTCAGATCCATG 58.795 50.000 0.00 0.00 0.00 3.66
1825 2170 2.842496 TGGTTGCTCTCTTCAGATCCAT 59.158 45.455 0.00 0.00 0.00 3.41
1826 2171 2.235650 CTGGTTGCTCTCTTCAGATCCA 59.764 50.000 0.00 0.00 0.00 3.41
1827 2172 2.499289 TCTGGTTGCTCTCTTCAGATCC 59.501 50.000 0.00 0.00 30.58 3.36
1828 2173 3.056250 TGTCTGGTTGCTCTCTTCAGATC 60.056 47.826 0.00 0.00 36.93 2.75
1829 2174 2.902486 TGTCTGGTTGCTCTCTTCAGAT 59.098 45.455 0.00 0.00 36.93 2.90
1830 2175 2.319844 TGTCTGGTTGCTCTCTTCAGA 58.680 47.619 0.00 0.00 32.79 3.27
1831 2176 2.827800 TGTCTGGTTGCTCTCTTCAG 57.172 50.000 0.00 0.00 0.00 3.02
1832 2177 2.634453 TCATGTCTGGTTGCTCTCTTCA 59.366 45.455 0.00 0.00 0.00 3.02
1833 2178 3.325293 TCATGTCTGGTTGCTCTCTTC 57.675 47.619 0.00 0.00 0.00 2.87
1834 2179 3.996921 ATCATGTCTGGTTGCTCTCTT 57.003 42.857 0.00 0.00 0.00 2.85
1835 2180 3.262660 TGAATCATGTCTGGTTGCTCTCT 59.737 43.478 0.00 0.00 0.00 3.10
1836 2181 3.373439 GTGAATCATGTCTGGTTGCTCTC 59.627 47.826 0.00 0.00 0.00 3.20
1837 2182 3.244665 TGTGAATCATGTCTGGTTGCTCT 60.245 43.478 0.00 0.00 0.00 4.09
1838 2183 3.076621 TGTGAATCATGTCTGGTTGCTC 58.923 45.455 0.00 0.00 0.00 4.26
1839 2184 3.144657 TGTGAATCATGTCTGGTTGCT 57.855 42.857 0.00 0.00 0.00 3.91
1840 2185 3.921119 TTGTGAATCATGTCTGGTTGC 57.079 42.857 0.00 0.00 0.00 4.17
1841 2186 6.218019 ACAAATTGTGAATCATGTCTGGTTG 58.782 36.000 0.00 0.00 0.00 3.77
1842 2187 6.409524 ACAAATTGTGAATCATGTCTGGTT 57.590 33.333 0.00 0.00 0.00 3.67
1843 2188 6.409524 AACAAATTGTGAATCATGTCTGGT 57.590 33.333 0.00 0.00 0.00 4.00
1844 2189 8.991243 ATAAACAAATTGTGAATCATGTCTGG 57.009 30.769 0.00 0.00 0.00 3.86
1845 2190 9.850628 AGATAAACAAATTGTGAATCATGTCTG 57.149 29.630 17.61 0.00 29.60 3.51
1859 2204 9.829507 TGGTGTTCAATTGAAGATAAACAAATT 57.170 25.926 21.05 0.00 34.27 1.82
1861 2206 9.258826 CATGGTGTTCAATTGAAGATAAACAAA 57.741 29.630 21.05 7.72 34.27 2.83
1862 2207 7.871973 CCATGGTGTTCAATTGAAGATAAACAA 59.128 33.333 21.05 8.80 34.27 2.83
1863 2208 7.232330 TCCATGGTGTTCAATTGAAGATAAACA 59.768 33.333 21.05 15.23 34.27 2.83
1864 2209 7.601856 TCCATGGTGTTCAATTGAAGATAAAC 58.398 34.615 21.05 9.70 34.27 2.01
1865 2210 7.773489 TCCATGGTGTTCAATTGAAGATAAA 57.227 32.000 21.05 9.96 34.27 1.40
1866 2211 7.835682 AGATCCATGGTGTTCAATTGAAGATAA 59.164 33.333 21.05 12.27 34.27 1.75
1867 2212 7.283807 CAGATCCATGGTGTTCAATTGAAGATA 59.716 37.037 21.05 13.16 34.27 1.98
1868 2213 6.096423 CAGATCCATGGTGTTCAATTGAAGAT 59.904 38.462 21.05 16.68 34.27 2.40
1869 2214 5.416639 CAGATCCATGGTGTTCAATTGAAGA 59.583 40.000 21.05 17.27 34.27 2.87
1870 2215 5.416639 TCAGATCCATGGTGTTCAATTGAAG 59.583 40.000 21.05 8.33 34.27 3.02
1871 2216 5.323581 TCAGATCCATGGTGTTCAATTGAA 58.676 37.500 16.91 16.91 0.00 2.69
1872 2217 4.920999 TCAGATCCATGGTGTTCAATTGA 58.079 39.130 12.58 3.38 0.00 2.57
1873 2218 5.416639 TCTTCAGATCCATGGTGTTCAATTG 59.583 40.000 12.58 0.00 0.00 2.32
1874 2219 5.573219 TCTTCAGATCCATGGTGTTCAATT 58.427 37.500 12.58 0.00 0.00 2.32
1875 2220 5.045359 TCTCTTCAGATCCATGGTGTTCAAT 60.045 40.000 12.58 0.00 0.00 2.57
1876 2221 4.286808 TCTCTTCAGATCCATGGTGTTCAA 59.713 41.667 12.58 0.01 0.00 2.69
1877 2222 3.840078 TCTCTTCAGATCCATGGTGTTCA 59.160 43.478 12.58 0.00 0.00 3.18
1878 2223 4.440880 CTCTCTTCAGATCCATGGTGTTC 58.559 47.826 12.58 7.75 0.00 3.18
1879 2224 3.370315 GCTCTCTTCAGATCCATGGTGTT 60.370 47.826 12.58 0.00 0.00 3.32
1880 2225 2.170187 GCTCTCTTCAGATCCATGGTGT 59.830 50.000 12.58 1.34 0.00 4.16
1881 2226 2.169978 TGCTCTCTTCAGATCCATGGTG 59.830 50.000 12.58 2.68 0.00 4.17
1882 2227 2.475155 TGCTCTCTTCAGATCCATGGT 58.525 47.619 12.58 0.00 0.00 3.55
1883 2228 3.204526 GTTGCTCTCTTCAGATCCATGG 58.795 50.000 4.97 4.97 0.00 3.66
1884 2229 3.204526 GGTTGCTCTCTTCAGATCCATG 58.795 50.000 0.00 0.00 0.00 3.66
1885 2230 2.842496 TGGTTGCTCTCTTCAGATCCAT 59.158 45.455 0.00 0.00 0.00 3.41
1886 2231 2.235650 CTGGTTGCTCTCTTCAGATCCA 59.764 50.000 0.00 0.00 0.00 3.41
1887 2232 2.499289 TCTGGTTGCTCTCTTCAGATCC 59.501 50.000 0.00 0.00 30.58 3.36
1888 2233 3.056250 TGTCTGGTTGCTCTCTTCAGATC 60.056 47.826 0.00 0.00 36.93 2.75
1889 2234 2.902486 TGTCTGGTTGCTCTCTTCAGAT 59.098 45.455 0.00 0.00 36.93 2.90
1890 2235 2.319844 TGTCTGGTTGCTCTCTTCAGA 58.680 47.619 0.00 0.00 32.79 3.27
1891 2236 2.827800 TGTCTGGTTGCTCTCTTCAG 57.172 50.000 0.00 0.00 0.00 3.02
1892 2237 2.634453 TCATGTCTGGTTGCTCTCTTCA 59.366 45.455 0.00 0.00 0.00 3.02
1893 2238 3.325293 TCATGTCTGGTTGCTCTCTTC 57.675 47.619 0.00 0.00 0.00 2.87
1894 2239 3.996921 ATCATGTCTGGTTGCTCTCTT 57.003 42.857 0.00 0.00 0.00 2.85
1895 2240 3.262660 TGAATCATGTCTGGTTGCTCTCT 59.737 43.478 0.00 0.00 0.00 3.10
1896 2241 3.373439 GTGAATCATGTCTGGTTGCTCTC 59.627 47.826 0.00 0.00 0.00 3.20
1897 2242 3.244665 TGTGAATCATGTCTGGTTGCTCT 60.245 43.478 0.00 0.00 0.00 4.09
1898 2243 3.076621 TGTGAATCATGTCTGGTTGCTC 58.923 45.455 0.00 0.00 0.00 4.26
1899 2244 3.144657 TGTGAATCATGTCTGGTTGCT 57.855 42.857 0.00 0.00 0.00 3.91
1900 2245 3.921119 TTGTGAATCATGTCTGGTTGC 57.079 42.857 0.00 0.00 0.00 4.17
1901 2246 6.218019 ACAAATTGTGAATCATGTCTGGTTG 58.782 36.000 0.00 0.00 0.00 3.77
1902 2247 6.409524 ACAAATTGTGAATCATGTCTGGTT 57.590 33.333 0.00 0.00 0.00 3.67
1903 2248 6.409524 AACAAATTGTGAATCATGTCTGGT 57.590 33.333 0.00 0.00 0.00 4.00
1904 2249 8.991243 ATAAACAAATTGTGAATCATGTCTGG 57.009 30.769 0.00 0.00 0.00 3.86
1905 2250 9.850628 AGATAAACAAATTGTGAATCATGTCTG 57.149 29.630 17.61 0.00 29.60 3.51
1920 2265 9.829507 TGGTGTTCAAATTGAAGATAAACAAAT 57.170 25.926 8.88 0.00 37.00 2.32
1921 2266 9.829507 ATGGTGTTCAAATTGAAGATAAACAAA 57.170 25.926 8.88 0.00 37.00 2.83
1922 2267 9.258826 CATGGTGTTCAAATTGAAGATAAACAA 57.741 29.630 8.88 0.00 37.00 2.83
1923 2268 7.871973 CCATGGTGTTCAAATTGAAGATAAACA 59.128 33.333 8.88 4.96 37.00 2.83
1924 2269 8.087750 TCCATGGTGTTCAAATTGAAGATAAAC 58.912 33.333 12.58 0.00 37.00 2.01
1925 2270 8.187913 TCCATGGTGTTCAAATTGAAGATAAA 57.812 30.769 12.58 0.00 37.00 1.40
1926 2271 7.773489 TCCATGGTGTTCAAATTGAAGATAA 57.227 32.000 12.58 1.18 37.00 1.75
1927 2272 7.835682 AGATCCATGGTGTTCAAATTGAAGATA 59.164 33.333 12.58 2.34 37.00 1.98
1928 2273 6.666546 AGATCCATGGTGTTCAAATTGAAGAT 59.333 34.615 12.58 6.39 37.00 2.40
1929 2274 6.012113 AGATCCATGGTGTTCAAATTGAAGA 58.988 36.000 12.58 4.94 37.00 2.87
1930 2275 6.071784 TCAGATCCATGGTGTTCAAATTGAAG 60.072 38.462 12.58 0.00 37.00 3.02
1931 2276 5.774184 TCAGATCCATGGTGTTCAAATTGAA 59.226 36.000 12.58 4.03 33.32 2.69
1932 2277 5.323581 TCAGATCCATGGTGTTCAAATTGA 58.676 37.500 12.58 4.98 0.00 2.57
1933 2278 5.648178 TCAGATCCATGGTGTTCAAATTG 57.352 39.130 12.58 2.85 0.00 2.32
1934 2279 6.012113 TCTTCAGATCCATGGTGTTCAAATT 58.988 36.000 12.58 0.00 0.00 1.82
1935 2280 5.573219 TCTTCAGATCCATGGTGTTCAAAT 58.427 37.500 12.58 0.00 0.00 2.32
1936 2281 4.984295 TCTTCAGATCCATGGTGTTCAAA 58.016 39.130 12.58 5.89 0.00 2.69
1937 2282 4.286808 TCTCTTCAGATCCATGGTGTTCAA 59.713 41.667 12.58 0.01 0.00 2.69
1938 2283 3.840078 TCTCTTCAGATCCATGGTGTTCA 59.160 43.478 12.58 0.00 0.00 3.18
1939 2284 4.440880 CTCTCTTCAGATCCATGGTGTTC 58.559 47.826 12.58 7.75 0.00 3.18
1940 2285 3.370315 GCTCTCTTCAGATCCATGGTGTT 60.370 47.826 12.58 0.00 0.00 3.32
1941 2286 2.170187 GCTCTCTTCAGATCCATGGTGT 59.830 50.000 12.58 1.34 0.00 4.16
1942 2287 2.169978 TGCTCTCTTCAGATCCATGGTG 59.830 50.000 12.58 2.68 0.00 4.17
1943 2288 2.475155 TGCTCTCTTCAGATCCATGGT 58.525 47.619 12.58 0.00 0.00 3.55
1944 2289 3.204526 GTTGCTCTCTTCAGATCCATGG 58.795 50.000 4.97 4.97 0.00 3.66
1945 2290 3.204526 GGTTGCTCTCTTCAGATCCATG 58.795 50.000 0.00 0.00 0.00 3.66
1946 2291 2.842496 TGGTTGCTCTCTTCAGATCCAT 59.158 45.455 0.00 0.00 0.00 3.41
1947 2292 2.235650 CTGGTTGCTCTCTTCAGATCCA 59.764 50.000 0.00 0.00 0.00 3.41
1948 2293 2.499289 TCTGGTTGCTCTCTTCAGATCC 59.501 50.000 0.00 0.00 30.58 3.36
1949 2294 3.056250 TGTCTGGTTGCTCTCTTCAGATC 60.056 47.826 0.00 0.00 36.93 2.75
1950 2295 2.902486 TGTCTGGTTGCTCTCTTCAGAT 59.098 45.455 0.00 0.00 36.93 2.90
1951 2296 2.319844 TGTCTGGTTGCTCTCTTCAGA 58.680 47.619 0.00 0.00 32.79 3.27
1952 2297 2.827800 TGTCTGGTTGCTCTCTTCAG 57.172 50.000 0.00 0.00 0.00 3.02
1953 2298 2.634453 TCATGTCTGGTTGCTCTCTTCA 59.366 45.455 0.00 0.00 0.00 3.02
1954 2299 3.325293 TCATGTCTGGTTGCTCTCTTC 57.675 47.619 0.00 0.00 0.00 2.87
1955 2300 3.996921 ATCATGTCTGGTTGCTCTCTT 57.003 42.857 0.00 0.00 0.00 2.85
1956 2301 3.262660 TGAATCATGTCTGGTTGCTCTCT 59.737 43.478 0.00 0.00 0.00 3.10
1957 2302 3.373439 GTGAATCATGTCTGGTTGCTCTC 59.627 47.826 0.00 0.00 0.00 3.20
1958 2303 3.244665 TGTGAATCATGTCTGGTTGCTCT 60.245 43.478 0.00 0.00 0.00 4.09
1959 2304 3.076621 TGTGAATCATGTCTGGTTGCTC 58.923 45.455 0.00 0.00 0.00 4.26
1960 2305 3.144657 TGTGAATCATGTCTGGTTGCT 57.855 42.857 0.00 0.00 0.00 3.91
1961 2306 3.921119 TTGTGAATCATGTCTGGTTGC 57.079 42.857 0.00 0.00 0.00 4.17
1962 2307 6.218019 ACAAATTGTGAATCATGTCTGGTTG 58.782 36.000 0.00 0.00 0.00 3.77
1963 2308 6.409524 ACAAATTGTGAATCATGTCTGGTT 57.590 33.333 0.00 0.00 0.00 3.67
1964 2309 6.409524 AACAAATTGTGAATCATGTCTGGT 57.590 33.333 0.00 0.00 0.00 4.00
1965 2310 8.991243 ATAAACAAATTGTGAATCATGTCTGG 57.009 30.769 0.00 0.00 0.00 3.86
1966 2311 9.850628 AGATAAACAAATTGTGAATCATGTCTG 57.149 29.630 17.61 0.00 29.60 3.51
1976 2321 9.270640 CCCAAATTGAAGATAAACAAATTGTGA 57.729 29.630 0.00 0.00 36.06 3.58
1977 2322 9.054922 ACCCAAATTGAAGATAAACAAATTGTG 57.945 29.630 0.00 0.00 36.06 3.33
1978 2323 9.271828 GACCCAAATTGAAGATAAACAAATTGT 57.728 29.630 0.00 0.00 36.06 2.71
1979 2324 8.434661 CGACCCAAATTGAAGATAAACAAATTG 58.565 33.333 0.00 0.00 36.94 2.32
1980 2325 7.117667 GCGACCCAAATTGAAGATAAACAAATT 59.882 33.333 0.00 0.00 0.00 1.82
1981 2326 6.589907 GCGACCCAAATTGAAGATAAACAAAT 59.410 34.615 0.00 0.00 0.00 2.32
1982 2327 5.923684 GCGACCCAAATTGAAGATAAACAAA 59.076 36.000 0.00 0.00 0.00 2.83
1983 2328 5.010112 TGCGACCCAAATTGAAGATAAACAA 59.990 36.000 0.00 0.00 0.00 2.83
1984 2329 4.520874 TGCGACCCAAATTGAAGATAAACA 59.479 37.500 0.00 0.00 0.00 2.83
1985 2330 5.054390 TGCGACCCAAATTGAAGATAAAC 57.946 39.130 0.00 0.00 0.00 2.01
1986 2331 5.184864 ACATGCGACCCAAATTGAAGATAAA 59.815 36.000 0.00 0.00 0.00 1.40
1987 2332 4.704540 ACATGCGACCCAAATTGAAGATAA 59.295 37.500 0.00 0.00 0.00 1.75
1988 2333 4.269183 ACATGCGACCCAAATTGAAGATA 58.731 39.130 0.00 0.00 0.00 1.98
1989 2334 3.091545 ACATGCGACCCAAATTGAAGAT 58.908 40.909 0.00 0.00 0.00 2.40
1990 2335 2.487762 GACATGCGACCCAAATTGAAGA 59.512 45.455 0.00 0.00 0.00 2.87
1991 2336 2.228582 TGACATGCGACCCAAATTGAAG 59.771 45.455 0.00 0.00 0.00 3.02
2012 2357 3.645687 GGAATGAGATAAGAGAGTGGGCT 59.354 47.826 0.00 0.00 0.00 5.19
2027 2372 5.713861 GGATCCAATCATTTAGGGGAATGAG 59.286 44.000 6.95 0.00 46.02 2.90
2030 2375 5.136737 ACAGGATCCAATCATTTAGGGGAAT 59.863 40.000 15.82 0.00 0.00 3.01
2066 2412 3.605634 TCTATAGGTGTGCACGCAAAAT 58.394 40.909 29.97 20.76 0.00 1.82
2081 2427 8.470805 AGTACATGATATTTTCCCGCTCTATAG 58.529 37.037 0.00 0.00 0.00 1.31
2082 2428 8.362464 AGTACATGATATTTTCCCGCTCTATA 57.638 34.615 0.00 0.00 0.00 1.31
2083 2429 7.246171 AGTACATGATATTTTCCCGCTCTAT 57.754 36.000 0.00 0.00 0.00 1.98
2084 2430 6.295123 GGAGTACATGATATTTTCCCGCTCTA 60.295 42.308 0.00 0.00 0.00 2.43
2148 2494 6.262944 TGTCCATGTATTTTGTATCAGATGGC 59.737 38.462 0.00 0.00 0.00 4.40
2168 2514 4.152248 CAGGTCCCATCCTGTCCA 57.848 61.111 4.75 0.00 46.92 4.02
2187 2533 1.906105 AATTCGAAGTGCGGGGGCTA 61.906 55.000 3.35 0.00 41.33 3.93
2197 2543 3.617669 CGTTCTGTGCAAAATTCGAAGT 58.382 40.909 3.35 0.00 0.00 3.01
2226 2572 6.598064 GGGACATTAGTACTGTTATGTGCTTT 59.402 38.462 24.30 6.63 38.76 3.51
2237 2583 6.106673 CCAAGTAACAGGGACATTAGTACTG 58.893 44.000 5.39 0.00 38.25 2.74
2305 2651 2.364973 TCGATGCCCTACAGCCCA 60.365 61.111 0.00 0.00 0.00 5.36
2440 2786 4.610714 GGAGGGATTCGCCGAGGC 62.611 72.222 3.59 3.59 37.63 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.