Multiple sequence alignment - TraesCS2B01G474900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G474900 chr2B 100.000 2282 0 0 1 2282 672022229 672024510 0.000000e+00 4215.0
1 TraesCS2B01G474900 chr2B 83.645 856 74 35 508 1331 672059066 672059887 0.000000e+00 745.0
2 TraesCS2B01G474900 chr2B 86.842 684 54 17 2 676 671903545 671904201 0.000000e+00 732.0
3 TraesCS2B01G474900 chr2B 85.509 697 54 19 668 1334 671909881 671910560 0.000000e+00 684.0
4 TraesCS2B01G474900 chr2B 86.022 279 30 7 1012 1287 673170698 673170970 7.970000e-75 291.0
5 TraesCS2B01G474900 chr2B 84.321 287 40 4 1002 1287 672796909 672796627 2.230000e-70 276.0
6 TraesCS2B01G474900 chr2D 88.079 1359 90 28 1 1334 562267030 562268341 0.000000e+00 1546.0
7 TraesCS2B01G474900 chr2D 86.111 1152 84 27 231 1332 562234492 562235617 0.000000e+00 1171.0
8 TraesCS2B01G474900 chr2D 84.177 632 72 19 723 1334 562340676 562341299 2.530000e-164 588.0
9 TraesCS2B01G474900 chr2D 80.161 746 87 32 1333 2046 562315892 562316608 3.380000e-138 501.0
10 TraesCS2B01G474900 chr2D 82.675 456 55 15 1333 1787 562268375 562268807 1.280000e-102 383.0
11 TraesCS2B01G474900 chr2D 84.880 291 37 4 999 1287 562449271 562449556 1.030000e-73 287.0
12 TraesCS2B01G474900 chr2D 85.121 289 27 11 1012 1294 562850847 562851125 4.800000e-72 281.0
13 TraesCS2B01G474900 chr2D 83.067 313 37 14 1333 1638 562341336 562341639 1.040000e-68 270.0
14 TraesCS2B01G474900 chr2D 91.979 187 15 0 1 187 562234289 562234475 1.740000e-66 263.0
15 TraesCS2B01G474900 chr2D 79.600 250 36 9 1909 2146 562236554 562236800 5.040000e-37 165.0
16 TraesCS2B01G474900 chr2D 81.421 183 29 4 1910 2091 562359427 562359605 6.570000e-31 145.0
17 TraesCS2B01G474900 chr2A 85.547 1363 131 42 1 1334 702939270 702940595 0.000000e+00 1365.0
18 TraesCS2B01G474900 chr2A 85.352 512 42 16 920 1407 702950939 702951441 1.220000e-137 499.0
19 TraesCS2B01G474900 chr2A 82.254 417 45 13 1869 2282 702953506 702953896 1.310000e-87 333.0
20 TraesCS2B01G474900 chr2A 87.018 285 27 8 1012 1293 703353829 703354106 1.700000e-81 313.0
21 TraesCS2B01G474900 chr2A 87.251 251 29 3 445 695 702948664 702948911 1.330000e-72 283.0
22 TraesCS2B01G474900 chr3B 85.185 54 8 0 2194 2247 146891605 146891658 3.170000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G474900 chr2B 672022229 672024510 2281 False 4215.000000 4215 100.000000 1 2282 1 chr2B.!!$F3 2281
1 TraesCS2B01G474900 chr2B 672059066 672059887 821 False 745.000000 745 83.645000 508 1331 1 chr2B.!!$F4 823
2 TraesCS2B01G474900 chr2B 671903545 671904201 656 False 732.000000 732 86.842000 2 676 1 chr2B.!!$F1 674
3 TraesCS2B01G474900 chr2B 671909881 671910560 679 False 684.000000 684 85.509000 668 1334 1 chr2B.!!$F2 666
4 TraesCS2B01G474900 chr2D 562267030 562268807 1777 False 964.500000 1546 85.377000 1 1787 2 chr2D.!!$F6 1786
5 TraesCS2B01G474900 chr2D 562234289 562236800 2511 False 533.000000 1171 85.896667 1 2146 3 chr2D.!!$F5 2145
6 TraesCS2B01G474900 chr2D 562315892 562316608 716 False 501.000000 501 80.161000 1333 2046 1 chr2D.!!$F1 713
7 TraesCS2B01G474900 chr2D 562340676 562341639 963 False 429.000000 588 83.622000 723 1638 2 chr2D.!!$F7 915
8 TraesCS2B01G474900 chr2A 702939270 702940595 1325 False 1365.000000 1365 85.547000 1 1334 1 chr2A.!!$F1 1333
9 TraesCS2B01G474900 chr2A 702948664 702953896 5232 False 371.666667 499 84.952333 445 2282 3 chr2A.!!$F3 1837

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
244 257 0.033601 ACCAAAGTGGGCACTGTTGA 60.034 50.0 2.05 0.0 43.37 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2177 6336 0.105913 AAACCCCTTTTCAGCCCGAA 60.106 50.0 0.0 0.0 0.0 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 88 1.429463 GCCAACCTCTACACTGTTCG 58.571 55.000 0.00 0.00 0.00 3.95
152 153 3.565214 ATGGACCACGGCACCACA 61.565 61.111 0.00 0.00 36.49 4.17
244 257 0.033601 ACCAAAGTGGGCACTGTTGA 60.034 50.000 2.05 0.00 43.37 3.18
335 348 3.975025 GGGCCCTAATACGGTCCA 58.025 61.111 17.04 0.00 45.23 4.02
353 366 5.433526 GGTCCACATTAGTTTATGCCAGTA 58.566 41.667 0.00 0.00 0.00 2.74
355 368 6.346096 GTCCACATTAGTTTATGCCAGTAGA 58.654 40.000 0.00 0.00 0.00 2.59
357 370 6.070481 TCCACATTAGTTTATGCCAGTAGACA 60.070 38.462 0.00 0.00 0.00 3.41
402 416 2.678836 CACGATTCCGACTAGACAGACT 59.321 50.000 0.00 0.00 39.50 3.24
404 418 3.870419 ACGATTCCGACTAGACAGACTAC 59.130 47.826 0.00 0.00 39.50 2.73
420 434 7.602644 AGACAGACTACAAATAATTCTTTCGCA 59.397 33.333 0.00 0.00 0.00 5.10
436 450 6.403049 TCTTTCGCACTTATGTTATTGGAGA 58.597 36.000 0.00 0.00 0.00 3.71
443 457 9.639601 CGCACTTATGTTATTGGAGAGAATATA 57.360 33.333 0.00 0.00 0.00 0.86
591 630 0.887387 CACACAGGTTTGGGGGTACG 60.887 60.000 0.00 0.00 29.54 3.67
780 2054 2.170607 TCGGAGCCCAGGAATAAAGAAG 59.829 50.000 0.00 0.00 0.00 2.85
816 2090 0.325296 TCCATGGTTAGCCTCGTCCT 60.325 55.000 12.58 0.00 35.27 3.85
840 2114 0.455410 GCGCATGGTATTTGCCTGAA 59.545 50.000 0.30 0.00 36.75 3.02
901 2246 3.955471 CTGGCAACCATATATACCCAGG 58.045 50.000 0.00 0.00 35.81 4.45
926 2272 1.521450 CTGGCTTGGTTCAGCACAGG 61.521 60.000 0.00 0.00 42.10 4.00
937 2901 2.288666 TCAGCACAGGAAACACTCAAC 58.711 47.619 0.00 0.00 0.00 3.18
938 2902 2.092968 TCAGCACAGGAAACACTCAACT 60.093 45.455 0.00 0.00 0.00 3.16
939 2903 2.684881 CAGCACAGGAAACACTCAACTT 59.315 45.455 0.00 0.00 0.00 2.66
940 2904 2.684881 AGCACAGGAAACACTCAACTTG 59.315 45.455 0.00 0.00 0.00 3.16
978 2963 2.021457 ACCAAAAGCAACAACGTAGCT 58.979 42.857 0.00 0.00 41.03 3.32
979 2964 3.002862 CACCAAAAGCAACAACGTAGCTA 59.997 43.478 5.36 0.00 37.70 3.32
980 2965 3.002965 ACCAAAAGCAACAACGTAGCTAC 59.997 43.478 14.19 14.19 37.70 3.58
981 2966 3.002862 CCAAAAGCAACAACGTAGCTACA 59.997 43.478 23.21 0.00 37.70 2.74
982 2967 4.496673 CCAAAAGCAACAACGTAGCTACAA 60.497 41.667 23.21 0.00 37.70 2.41
983 2968 4.468095 AAAGCAACAACGTAGCTACAAG 57.532 40.909 23.21 13.91 37.70 3.16
984 2969 2.413837 AGCAACAACGTAGCTACAAGG 58.586 47.619 23.21 13.27 36.73 3.61
985 2970 1.136057 GCAACAACGTAGCTACAAGGC 60.136 52.381 23.21 13.01 0.00 4.35
1024 3021 0.667487 CTGCGCCTTCTTCTTCGACA 60.667 55.000 4.18 0.00 0.00 4.35
1089 3086 3.123620 CTCTGCACCAAGCCGCTC 61.124 66.667 0.00 0.00 44.83 5.03
1397 3446 1.007734 GTCGTCGGAGTTGCTCACA 60.008 57.895 0.00 0.00 31.08 3.58
1442 3491 3.195698 GCCGCCGGTCAAGTGATC 61.196 66.667 4.45 0.00 0.00 2.92
1471 3520 1.447838 CGCAGCGGAAAAGGAGCTA 60.448 57.895 7.00 0.00 39.48 3.32
1475 3524 0.537653 AGCGGAAAAGGAGCTAGACC 59.462 55.000 0.00 0.00 39.74 3.85
1476 3525 0.537653 GCGGAAAAGGAGCTAGACCT 59.462 55.000 0.00 0.00 39.69 3.85
1484 3536 2.944129 AGGAGCTAGACCTGATCTGAC 58.056 52.381 7.90 0.00 38.49 3.51
1486 3538 1.606668 GAGCTAGACCTGATCTGACGG 59.393 57.143 0.38 0.00 38.49 4.79
1489 3541 2.746803 GCTAGACCTGATCTGACGGAGA 60.747 54.545 0.38 0.00 38.49 3.71
1496 3549 3.490590 CCTGATCTGACGGAGACAATCAG 60.491 52.174 0.38 5.25 41.63 2.90
1508 3561 5.486526 GGAGACAATCAGACAAGATTCACT 58.513 41.667 0.00 0.00 36.13 3.41
1510 3563 6.756074 GGAGACAATCAGACAAGATTCACTAG 59.244 42.308 0.00 0.00 36.13 2.57
1511 3564 6.105333 AGACAATCAGACAAGATTCACTAGC 58.895 40.000 0.00 0.00 36.13 3.42
1512 3565 5.798132 ACAATCAGACAAGATTCACTAGCA 58.202 37.500 0.00 0.00 36.13 3.49
1517 3571 9.453572 AATCAGACAAGATTCACTAGCAATTAA 57.546 29.630 0.00 0.00 33.03 1.40
1571 3645 2.811431 TCCCTGCGTTAAATGTCACTTG 59.189 45.455 0.00 0.00 0.00 3.16
1595 3669 6.260714 TGTGTATGAGAGCGAATTTGCAATAT 59.739 34.615 19.82 10.32 37.31 1.28
1606 5374 6.308766 GCGAATTTGCAATATCACTTTCACTT 59.691 34.615 13.04 0.00 34.15 3.16
1607 5375 7.484641 GCGAATTTGCAATATCACTTTCACTTA 59.515 33.333 13.04 0.00 34.15 2.24
1609 5377 8.693542 AATTTGCAATATCACTTTCACTTAGC 57.306 30.769 0.00 0.00 0.00 3.09
1611 5379 6.426980 TGCAATATCACTTTCACTTAGCAG 57.573 37.500 0.00 0.00 0.00 4.24
1616 5384 8.812329 CAATATCACTTTCACTTAGCAGACTAC 58.188 37.037 0.00 0.00 0.00 2.73
1624 5392 2.761208 ACTTAGCAGACTACCAAGCGAT 59.239 45.455 0.00 0.00 0.00 4.58
1643 5411 6.909909 AGCGATTCGACATATAACATGTCTA 58.090 36.000 10.88 2.39 44.50 2.59
1691 5466 2.372264 AGCGTGCCAATGAGATTGAAT 58.628 42.857 0.00 0.00 42.83 2.57
1701 5476 6.016443 GCCAATGAGATTGAATAAGCTAAGCT 60.016 38.462 0.00 0.00 42.83 3.74
1724 5507 4.214545 TGTTGGATGTTTACCACACGATTC 59.785 41.667 0.00 0.00 38.61 2.52
1762 5545 3.655777 TCTAAGACCTGGGGTGTCAAAAT 59.344 43.478 0.00 0.00 35.25 1.82
1764 5547 1.075536 AGACCTGGGGTGTCAAAATCC 59.924 52.381 0.00 0.00 35.25 3.01
1799 5637 9.727859 GTACTAATCTGATGTCTCCATCTACTA 57.272 37.037 4.51 0.00 46.38 1.82
1812 5650 5.674525 TCCATCTACTAAGCATCAACAAGG 58.325 41.667 0.00 0.00 0.00 3.61
1846 5708 1.762370 CCCACTTTTGGCCTTGAGTTT 59.238 47.619 3.32 0.00 42.35 2.66
1885 5747 3.810373 CAATGCTGGAGTTACGTTGTTC 58.190 45.455 0.00 0.00 0.00 3.18
1895 5757 3.120786 AGTTACGTTGTTCTGCGTATTGC 60.121 43.478 0.00 0.00 42.10 3.56
1939 6087 2.881074 TCGTGCAGAGAGCTTTATGTC 58.119 47.619 0.48 0.00 45.94 3.06
2027 6175 4.640201 CCAGTCCTAAATGTACAATGGTGG 59.360 45.833 0.00 0.00 0.00 4.61
2029 6177 4.013728 GTCCTAAATGTACAATGGTGGCA 58.986 43.478 0.00 0.00 0.00 4.92
2032 6180 5.045505 TCCTAAATGTACAATGGTGGCAGTA 60.046 40.000 0.00 0.00 0.00 2.74
2034 6182 4.301072 AATGTACAATGGTGGCAGTAGT 57.699 40.909 0.00 0.00 0.00 2.73
2036 6184 4.893829 TGTACAATGGTGGCAGTAGTTA 57.106 40.909 0.00 0.00 0.00 2.24
2037 6185 5.429681 TGTACAATGGTGGCAGTAGTTAT 57.570 39.130 0.00 0.00 0.00 1.89
2049 6197 7.062956 GGTGGCAGTAGTTATTTGTAAAATTGC 59.937 37.037 0.00 0.00 0.00 3.56
2053 6201 7.218204 GCAGTAGTTATTTGTAAAATTGCCTCG 59.782 37.037 0.00 0.00 0.00 4.63
2054 6202 7.696453 CAGTAGTTATTTGTAAAATTGCCTCGG 59.304 37.037 0.00 0.00 0.00 4.63
2071 6228 4.624604 GCCTCGGAAAATAAAGGAGGTGTA 60.625 45.833 7.18 0.00 44.81 2.90
2086 6243 7.195374 AGGAGGTGTATGTAAAAGCAATCTA 57.805 36.000 0.00 0.00 0.00 1.98
2125 6283 7.115414 AGAGGAAGGCTAATATATTTGGATGC 58.885 38.462 2.68 1.77 0.00 3.91
2133 6292 7.753580 GGCTAATATATTTGGATGCGGTTTTAC 59.246 37.037 2.68 0.00 0.00 2.01
2155 6314 3.519908 TCTTTTGTTGATCGTTCTGCG 57.480 42.857 0.00 0.00 43.01 5.18
2169 6328 0.944386 TCTGCGTCAAGTTGCCTTTC 59.056 50.000 0.00 0.00 0.00 2.62
2170 6329 0.040067 CTGCGTCAAGTTGCCTTTCC 60.040 55.000 0.00 0.00 0.00 3.13
2174 6333 2.481276 GCGTCAAGTTGCCTTTCCTTTT 60.481 45.455 0.00 0.00 0.00 2.27
2175 6334 3.780902 CGTCAAGTTGCCTTTCCTTTTT 58.219 40.909 0.00 0.00 0.00 1.94
2176 6335 3.796717 CGTCAAGTTGCCTTTCCTTTTTC 59.203 43.478 0.00 0.00 0.00 2.29
2177 6336 4.440112 CGTCAAGTTGCCTTTCCTTTTTCT 60.440 41.667 0.00 0.00 0.00 2.52
2178 6337 5.419542 GTCAAGTTGCCTTTCCTTTTTCTT 58.580 37.500 0.00 0.00 0.00 2.52
2183 6342 1.336887 GCCTTTCCTTTTTCTTCGGGC 60.337 52.381 0.00 0.00 0.00 6.13
2200 6359 2.565391 CGGGCTGAAAAGGGGTTTTATT 59.435 45.455 0.00 0.00 0.00 1.40
2208 6367 7.230510 GCTGAAAAGGGGTTTTATTCCAAAATT 59.769 33.333 0.00 0.00 0.00 1.82
2255 6416 1.674057 CCTCGATACATGGAGGCCC 59.326 63.158 0.00 0.00 44.10 5.80
2265 6427 4.814294 GGAGGCCCGTGTGTAGCG 62.814 72.222 0.00 0.00 0.00 4.26
2269 6431 2.674084 GGCCCGTGTGTAGCGAAAC 61.674 63.158 0.00 0.00 0.00 2.78
2272 6434 0.599204 CCCGTGTGTAGCGAAACAGT 60.599 55.000 0.00 0.00 0.00 3.55
2274 6436 0.506932 CGTGTGTAGCGAAACAGTGG 59.493 55.000 0.00 0.00 0.00 4.00
2277 6439 1.137282 TGTGTAGCGAAACAGTGGTGA 59.863 47.619 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
152 153 1.202879 TGCCGTTCTTTTCTCCATGGT 60.203 47.619 12.58 0.00 0.00 3.55
244 257 6.164176 GTGGTTAGGCACGCTAATTATAGAT 58.836 40.000 0.00 0.00 0.00 1.98
335 348 6.070194 AGGTGTCTACTGGCATAAACTAATGT 60.070 38.462 0.00 0.00 0.00 2.71
353 366 7.443575 GCATCAAATCTACATCATTAGGTGTCT 59.556 37.037 0.00 0.00 0.00 3.41
355 368 6.488006 GGCATCAAATCTACATCATTAGGTGT 59.512 38.462 0.00 0.00 0.00 4.16
357 370 6.006449 GGGCATCAAATCTACATCATTAGGT 58.994 40.000 0.00 0.00 0.00 3.08
436 450 7.769507 TCGGCGTAAGATCTGAGTATATATTCT 59.230 37.037 6.85 0.00 43.02 2.40
443 457 3.741249 TCTCGGCGTAAGATCTGAGTAT 58.259 45.455 6.85 0.00 43.02 2.12
456 470 1.135344 GCTCTACTTTTCTCTCGGCGT 60.135 52.381 6.85 0.00 0.00 5.68
591 630 3.063084 AGAGACGTCGCCCTCCAC 61.063 66.667 16.07 0.00 0.00 4.02
816 2090 2.439338 AAATACCATGCGCCGCCA 60.439 55.556 6.63 0.00 0.00 5.69
840 2114 3.374402 CGAGACGAGCCCACAGGT 61.374 66.667 0.00 0.00 34.57 4.00
901 2246 3.056328 GAACCAAGCCAGGGTCGC 61.056 66.667 0.00 0.00 37.77 5.19
911 2256 2.023673 TGTTTCCTGTGCTGAACCAAG 58.976 47.619 0.00 0.00 0.00 3.61
926 2272 1.609072 GGGAGGCAAGTTGAGTGTTTC 59.391 52.381 7.16 0.00 0.00 2.78
937 2901 4.101448 CCGGGAGTGGGAGGCAAG 62.101 72.222 0.00 0.00 0.00 4.01
978 2963 1.671845 GTGTTTTCGTGTGGCCTTGTA 59.328 47.619 3.32 0.00 0.00 2.41
979 2964 0.454196 GTGTTTTCGTGTGGCCTTGT 59.546 50.000 3.32 0.00 0.00 3.16
980 2965 0.591236 CGTGTTTTCGTGTGGCCTTG 60.591 55.000 3.32 0.00 0.00 3.61
981 2966 0.745128 TCGTGTTTTCGTGTGGCCTT 60.745 50.000 3.32 0.00 0.00 4.35
982 2967 0.534203 ATCGTGTTTTCGTGTGGCCT 60.534 50.000 3.32 0.00 0.00 5.19
983 2968 0.385473 CATCGTGTTTTCGTGTGGCC 60.385 55.000 0.00 0.00 0.00 5.36
984 2969 0.385473 CCATCGTGTTTTCGTGTGGC 60.385 55.000 0.00 0.00 33.86 5.01
985 2970 0.385473 GCCATCGTGTTTTCGTGTGG 60.385 55.000 0.00 0.00 39.03 4.17
1263 3270 2.330372 TTAGCTCGCGACGGACACT 61.330 57.895 3.71 0.00 0.00 3.55
1305 3312 1.024271 TCTTGTTTGCTCAGGTGCAC 58.976 50.000 8.80 8.80 43.20 4.57
1352 3397 3.190118 GTCTTGCTTCATCAACCAAGGAG 59.810 47.826 0.00 0.00 36.30 3.69
1364 3409 2.357034 GACCCGCGTCTTGCTTCA 60.357 61.111 4.92 0.00 43.27 3.02
1442 3491 2.404789 CGCTGCGTTTATGCCCAG 59.595 61.111 14.93 0.00 0.00 4.45
1471 3520 1.004862 TGTCTCCGTCAGATCAGGTCT 59.995 52.381 0.00 0.00 37.80 3.85
1475 3524 3.379688 TCTGATTGTCTCCGTCAGATCAG 59.620 47.826 0.00 5.11 42.36 2.90
1476 3525 3.129462 GTCTGATTGTCTCCGTCAGATCA 59.871 47.826 7.47 0.00 46.92 2.92
1484 3536 4.328440 GTGAATCTTGTCTGATTGTCTCCG 59.672 45.833 0.00 0.00 36.86 4.63
1486 3538 6.255453 GCTAGTGAATCTTGTCTGATTGTCTC 59.745 42.308 0.00 0.00 36.86 3.36
1489 3541 5.798132 TGCTAGTGAATCTTGTCTGATTGT 58.202 37.500 0.00 0.00 36.86 2.71
1496 3549 6.188175 CGCTTAATTGCTAGTGAATCTTGTC 58.812 40.000 0.00 0.00 0.00 3.18
1508 3561 1.675483 CACATGGCCGCTTAATTGCTA 59.325 47.619 0.00 0.00 0.00 3.49
1510 3563 0.173255 ACACATGGCCGCTTAATTGC 59.827 50.000 0.00 0.00 0.00 3.56
1511 3564 1.912001 CACACATGGCCGCTTAATTG 58.088 50.000 0.00 0.00 0.00 2.32
1512 3565 0.173255 GCACACATGGCCGCTTAATT 59.827 50.000 0.00 0.00 0.00 1.40
1560 3628 4.389992 CGCTCTCATACACAAGTGACATTT 59.610 41.667 7.28 0.00 0.00 2.32
1571 3645 4.340894 TTGCAAATTCGCTCTCATACAC 57.659 40.909 0.00 0.00 0.00 2.90
1595 3669 4.587262 TGGTAGTCTGCTAAGTGAAAGTGA 59.413 41.667 0.00 0.00 0.00 3.41
1606 5374 2.223502 CGAATCGCTTGGTAGTCTGCTA 60.224 50.000 0.00 0.00 0.00 3.49
1607 5375 1.469940 CGAATCGCTTGGTAGTCTGCT 60.470 52.381 0.00 0.00 0.00 4.24
1609 5377 2.186076 GTCGAATCGCTTGGTAGTCTG 58.814 52.381 0.00 0.00 0.00 3.51
1611 5379 2.273370 TGTCGAATCGCTTGGTAGTC 57.727 50.000 0.00 0.00 0.00 2.59
1616 5384 5.177511 ACATGTTATATGTCGAATCGCTTGG 59.822 40.000 0.00 0.00 0.00 3.61
1643 5411 3.890756 TGAACAGAAACAGGATTGCACAT 59.109 39.130 0.00 0.00 0.00 3.21
1691 5466 5.646360 GGTAAACATCCAACAGCTTAGCTTA 59.354 40.000 3.00 0.00 36.40 3.09
1701 5476 3.195471 TCGTGTGGTAAACATCCAACA 57.805 42.857 0.00 0.00 41.97 3.33
1762 5545 2.889045 CAGATTAGTACGGGGATTCGGA 59.111 50.000 0.00 0.00 0.00 4.55
1764 5547 4.022242 ACATCAGATTAGTACGGGGATTCG 60.022 45.833 0.00 0.00 0.00 3.34
1799 5637 2.590821 AGAGTTGCCTTGTTGATGCTT 58.409 42.857 0.00 0.00 0.00 3.91
1828 5690 2.430332 TCCAAACTCAAGGCCAAAAGTG 59.570 45.455 5.01 0.00 0.00 3.16
1874 5736 3.150731 GCAATACGCAGAACAACGTAAC 58.849 45.455 0.00 0.00 46.62 2.50
1961 6109 3.763057 CTGGGTTTGTAAAAGGCTAGGT 58.237 45.455 0.00 0.00 0.00 3.08
2027 6175 7.218204 CGAGGCAATTTTACAAATAACTACTGC 59.782 37.037 0.00 0.00 0.00 4.40
2029 6177 7.608761 TCCGAGGCAATTTTACAAATAACTACT 59.391 33.333 0.00 0.00 0.00 2.57
2032 6180 6.827586 TCCGAGGCAATTTTACAAATAACT 57.172 33.333 0.00 0.00 0.00 2.24
2036 6184 9.495572 TTTATTTTCCGAGGCAATTTTACAAAT 57.504 25.926 0.00 0.00 0.00 2.32
2037 6185 8.888579 TTTATTTTCCGAGGCAATTTTACAAA 57.111 26.923 0.00 0.00 0.00 2.83
2049 6197 3.951663 ACACCTCCTTTATTTTCCGAGG 58.048 45.455 0.00 0.00 44.74 4.63
2054 6202 9.569167 GCTTTTACATACACCTCCTTTATTTTC 57.431 33.333 0.00 0.00 0.00 2.29
2086 6243 4.386873 GCCTTCCTCTCCCCTGATAAAATT 60.387 45.833 0.00 0.00 0.00 1.82
2125 6283 6.196571 ACGATCAACAAAAGAAGTAAAACCG 58.803 36.000 0.00 0.00 0.00 4.44
2169 6328 3.552890 CCTTTTCAGCCCGAAGAAAAAGG 60.553 47.826 9.72 9.72 41.55 3.11
2170 6329 3.552890 CCCTTTTCAGCCCGAAGAAAAAG 60.553 47.826 0.00 0.00 41.55 2.27
2174 6333 0.251165 CCCCTTTTCAGCCCGAAGAA 60.251 55.000 0.00 0.00 34.32 2.52
2175 6334 1.378762 CCCCTTTTCAGCCCGAAGA 59.621 57.895 0.00 0.00 34.32 2.87
2176 6335 0.539669 AACCCCTTTTCAGCCCGAAG 60.540 55.000 0.00 0.00 34.32 3.79
2177 6336 0.105913 AAACCCCTTTTCAGCCCGAA 60.106 50.000 0.00 0.00 0.00 4.30
2178 6337 0.105913 AAAACCCCTTTTCAGCCCGA 60.106 50.000 0.00 0.00 0.00 5.14
2183 6342 8.690203 AATTTTGGAATAAAACCCCTTTTCAG 57.310 30.769 0.00 0.00 31.74 3.02
2208 6367 6.040504 TCTCGCCTCTGCTTTGTAATTCTATA 59.959 38.462 0.00 0.00 34.43 1.31
2214 6373 3.334583 TTCTCGCCTCTGCTTTGTAAT 57.665 42.857 0.00 0.00 34.43 1.89
2221 6380 0.463620 GAGGAATTCTCGCCTCTGCT 59.536 55.000 5.23 0.00 45.72 4.24
2240 6401 1.300931 CACGGGCCTCCATGTATCG 60.301 63.158 0.84 0.00 0.00 2.92
2241 6402 0.532862 CACACGGGCCTCCATGTATC 60.533 60.000 0.84 0.00 0.00 2.24
2242 6403 1.271840 ACACACGGGCCTCCATGTAT 61.272 55.000 0.84 0.00 0.00 2.29
2243 6404 0.615261 TACACACGGGCCTCCATGTA 60.615 55.000 0.84 4.52 0.00 2.29
2255 6416 0.506932 CCACTGTTTCGCTACACACG 59.493 55.000 0.00 0.00 0.00 4.49
2258 6420 1.525619 GTCACCACTGTTTCGCTACAC 59.474 52.381 0.00 0.00 0.00 2.90
2260 6422 1.525619 GTGTCACCACTGTTTCGCTAC 59.474 52.381 0.00 0.00 38.61 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.