Multiple sequence alignment - TraesCS2B01G473500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G473500 chr2B 100.000 4717 0 0 1 4717 670597475 670592759 0.000000e+00 8711.0
1 TraesCS2B01G473500 chr2B 93.233 2069 105 13 1794 3857 670297934 670295896 0.000000e+00 3013.0
2 TraesCS2B01G473500 chr2B 93.354 316 15 4 1302 1617 670325590 670325281 3.330000e-126 462.0
3 TraesCS2B01G473500 chr2B 81.955 532 55 21 4003 4519 670295783 670295278 3.400000e-111 412.0
4 TraesCS2B01G473500 chr2B 100.000 31 0 0 3815 3845 670593626 670593596 1.830000e-04 58.4
5 TraesCS2B01G473500 chr2B 100.000 31 0 0 3850 3880 670593661 670593631 1.830000e-04 58.4
6 TraesCS2B01G473500 chr2D 86.228 3391 261 99 1 3310 561046191 561049456 0.000000e+00 3485.0
7 TraesCS2B01G473500 chr2D 87.738 734 52 13 2016 2730 561289493 561290207 0.000000e+00 822.0
8 TraesCS2B01G473500 chr2D 83.829 773 71 23 3073 3836 561316196 561316923 0.000000e+00 686.0
9 TraesCS2B01G473500 chr2D 90.467 535 25 7 3316 3850 561049494 561050002 0.000000e+00 682.0
10 TraesCS2B01G473500 chr2D 86.239 654 60 16 4057 4687 561050126 561050772 0.000000e+00 682.0
11 TraesCS2B01G473500 chr2D 91.899 358 27 2 2721 3076 561297690 561298047 2.530000e-137 499.0
12 TraesCS2B01G473500 chr2A 92.344 1267 71 12 1941 3198 701011444 701012693 0.000000e+00 1779.0
13 TraesCS2B01G473500 chr2A 84.968 1244 87 42 733 1899 701010227 701011447 0.000000e+00 1170.0
14 TraesCS2B01G473500 chr2A 90.167 539 30 8 3316 3850 701012792 701013311 0.000000e+00 680.0
15 TraesCS2B01G473500 chr2A 88.350 515 33 14 3921 4415 701013331 701013838 1.130000e-165 593.0
16 TraesCS2B01G473500 chr2A 83.862 378 41 9 2 379 700994779 700995136 4.520000e-90 342.0
17 TraesCS2B01G473500 chr2A 91.398 93 7 1 643 735 701004773 701004864 4.960000e-25 126.0
18 TraesCS2B01G473500 chr3B 81.613 310 53 4 1886 2193 214707824 214707517 2.180000e-63 254.0
19 TraesCS2B01G473500 chr6D 79.882 169 30 3 649 816 353655405 353655570 2.310000e-23 121.0
20 TraesCS2B01G473500 chr3D 80.952 105 20 0 4544 4648 582846780 582846676 3.020000e-12 84.2
21 TraesCS2B01G473500 chr7A 87.500 72 8 1 4620 4690 675241893 675241822 1.090000e-11 82.4
22 TraesCS2B01G473500 chrUn 95.833 48 2 0 4544 4591 90112181 90112134 1.410000e-10 78.7
23 TraesCS2B01G473500 chr3A 100.000 29 0 0 3341 3369 434491277 434491249 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G473500 chr2B 670592759 670597475 4716 True 2942.600000 8711 100.000000 1 4717 3 chr2B.!!$R3 4716
1 TraesCS2B01G473500 chr2B 670295278 670297934 2656 True 1712.500000 3013 87.594000 1794 4519 2 chr2B.!!$R2 2725
2 TraesCS2B01G473500 chr2D 561046191 561050772 4581 False 1616.333333 3485 87.644667 1 4687 3 chr2D.!!$F4 4686
3 TraesCS2B01G473500 chr2D 561289493 561290207 714 False 822.000000 822 87.738000 2016 2730 1 chr2D.!!$F1 714
4 TraesCS2B01G473500 chr2D 561316196 561316923 727 False 686.000000 686 83.829000 3073 3836 1 chr2D.!!$F3 763
5 TraesCS2B01G473500 chr2A 701010227 701013838 3611 False 1055.500000 1779 88.957250 733 4415 4 chr2A.!!$F3 3682

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
934 1021 0.178990 GGGGCGATTTAGGGCAGAAT 60.179 55.0 0.00 0.0 0.00 2.40 F
1102 1221 0.674581 CATGGCGACCAAGAGCAAGA 60.675 55.0 2.68 0.0 36.95 3.02 F
2052 2213 0.600255 CTTTGTGGCTCGTCGGAAGT 60.600 55.0 0.00 0.0 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1964 2125 0.984230 CCTTACCAGGAGCAGGTTCA 59.016 55.000 0.00 0.0 44.19 3.18 R
2265 2440 1.075374 AGGTGAAATGCTGGGCACTAA 59.925 47.619 0.00 0.0 43.04 2.24 R
3717 3972 0.175302 CAGGGCTCACTGCTCAGTAG 59.825 60.000 1.79 0.0 46.80 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 8.314143 AGATAAAAATTGATGCCAAAGTTGTG 57.686 30.769 0.00 0.00 35.67 3.33
52 53 3.472283 TGATGCCAAAGTTGTGCAATT 57.528 38.095 10.03 0.00 37.70 2.32
53 54 4.597404 TGATGCCAAAGTTGTGCAATTA 57.403 36.364 10.03 0.71 37.70 1.40
54 55 4.953667 TGATGCCAAAGTTGTGCAATTAA 58.046 34.783 10.03 0.00 37.70 1.40
55 56 5.549347 TGATGCCAAAGTTGTGCAATTAAT 58.451 33.333 10.03 0.00 37.70 1.40
56 57 6.695429 TGATGCCAAAGTTGTGCAATTAATA 58.305 32.000 10.03 0.00 37.70 0.98
124 125 5.181811 TCTGCAACATATCACTGACCAAAAG 59.818 40.000 0.00 0.00 0.00 2.27
125 126 4.826733 TGCAACATATCACTGACCAAAAGT 59.173 37.500 0.00 0.00 0.00 2.66
126 127 5.048782 TGCAACATATCACTGACCAAAAGTC 60.049 40.000 0.00 0.00 46.51 3.01
127 128 5.619981 GCAACATATCACTGACCAAAAGTCC 60.620 44.000 0.00 0.00 45.68 3.85
128 129 5.241403 ACATATCACTGACCAAAAGTCCA 57.759 39.130 0.00 0.00 45.68 4.02
129 130 5.630121 ACATATCACTGACCAAAAGTCCAA 58.370 37.500 0.00 0.00 45.68 3.53
130 131 6.068010 ACATATCACTGACCAAAAGTCCAAA 58.932 36.000 0.00 0.00 45.68 3.28
131 132 6.549364 ACATATCACTGACCAAAAGTCCAAAA 59.451 34.615 0.00 0.00 45.68 2.44
140 141 2.703007 CAAAAGTCCAAAACCCATCCCA 59.297 45.455 0.00 0.00 0.00 4.37
172 173 2.433868 AATTATCCGTCGATGGTCGG 57.566 50.000 22.88 14.44 46.93 4.79
194 195 2.143876 AACAGGTACCCATTGCCATC 57.856 50.000 8.74 0.00 0.00 3.51
215 216 2.361757 CTCACTCTCATCCATCTCGCTT 59.638 50.000 0.00 0.00 0.00 4.68
216 217 2.360483 TCACTCTCATCCATCTCGCTTC 59.640 50.000 0.00 0.00 0.00 3.86
228 229 1.970917 CTCGCTTCGCACCAATCCAC 61.971 60.000 0.00 0.00 0.00 4.02
230 231 3.039202 GCTTCGCACCAATCCACCG 62.039 63.158 0.00 0.00 0.00 4.94
239 240 0.251916 CCAATCCACCGCCTGACTTA 59.748 55.000 0.00 0.00 0.00 2.24
241 242 2.213499 CAATCCACCGCCTGACTTATC 58.787 52.381 0.00 0.00 0.00 1.75
242 243 0.389391 ATCCACCGCCTGACTTATCG 59.611 55.000 0.00 0.00 0.00 2.92
255 256 1.134037 ACTTATCGGACGAGCTCTCCT 60.134 52.381 22.12 12.14 0.00 3.69
258 259 0.535553 ATCGGACGAGCTCTCCTACC 60.536 60.000 22.12 13.07 0.00 3.18
259 260 1.451567 CGGACGAGCTCTCCTACCA 60.452 63.158 22.12 0.00 0.00 3.25
262 263 2.054140 GACGAGCTCTCCTACCAGCG 62.054 65.000 12.85 0.00 40.84 5.18
264 265 1.731093 GAGCTCTCCTACCAGCGAC 59.269 63.158 6.43 0.00 40.84 5.19
275 276 3.330720 CAGCGACCCCCTCCCTTT 61.331 66.667 0.00 0.00 0.00 3.11
282 283 2.234296 CCCCCTCCCTTTGCTCAGT 61.234 63.158 0.00 0.00 0.00 3.41
297 298 2.610727 GCTCAGTCAAACCGCTACTTCT 60.611 50.000 0.00 0.00 0.00 2.85
301 302 2.067013 GTCAAACCGCTACTTCTCCAC 58.933 52.381 0.00 0.00 0.00 4.02
302 303 1.001633 TCAAACCGCTACTTCTCCACC 59.998 52.381 0.00 0.00 0.00 4.61
303 304 0.323957 AAACCGCTACTTCTCCACCC 59.676 55.000 0.00 0.00 0.00 4.61
304 305 0.544595 AACCGCTACTTCTCCACCCT 60.545 55.000 0.00 0.00 0.00 4.34
305 306 0.333993 ACCGCTACTTCTCCACCCTA 59.666 55.000 0.00 0.00 0.00 3.53
306 307 0.745468 CCGCTACTTCTCCACCCTAC 59.255 60.000 0.00 0.00 0.00 3.18
307 308 0.745468 CGCTACTTCTCCACCCTACC 59.255 60.000 0.00 0.00 0.00 3.18
308 309 1.685491 CGCTACTTCTCCACCCTACCT 60.685 57.143 0.00 0.00 0.00 3.08
309 310 2.033372 GCTACTTCTCCACCCTACCTC 58.967 57.143 0.00 0.00 0.00 3.85
310 311 2.299521 CTACTTCTCCACCCTACCTCG 58.700 57.143 0.00 0.00 0.00 4.63
311 312 0.971447 ACTTCTCCACCCTACCTCGC 60.971 60.000 0.00 0.00 0.00 5.03
342 343 3.702792 TCTCCTTCTCCGAAGACATCTT 58.297 45.455 5.24 0.00 39.23 2.40
343 344 3.697045 TCTCCTTCTCCGAAGACATCTTC 59.303 47.826 11.00 11.00 46.63 2.87
366 367 3.455910 CTCCCTTCTCTCTCTCTCTCTCA 59.544 52.174 0.00 0.00 0.00 3.27
370 371 4.080919 CCTTCTCTCTCTCTCTCTCACTCA 60.081 50.000 0.00 0.00 0.00 3.41
374 375 3.837731 TCTCTCTCTCTCTCACTCACTCA 59.162 47.826 0.00 0.00 0.00 3.41
378 379 3.326297 TCTCTCTCTCACTCACTCACTCA 59.674 47.826 0.00 0.00 0.00 3.41
382 383 3.145286 CTCTCACTCACTCACTCACTCA 58.855 50.000 0.00 0.00 0.00 3.41
383 384 2.881513 TCTCACTCACTCACTCACTCAC 59.118 50.000 0.00 0.00 0.00 3.51
384 385 2.620585 CTCACTCACTCACTCACTCACA 59.379 50.000 0.00 0.00 0.00 3.58
385 386 2.359214 TCACTCACTCACTCACTCACAC 59.641 50.000 0.00 0.00 0.00 3.82
386 387 2.099756 CACTCACTCACTCACTCACACA 59.900 50.000 0.00 0.00 0.00 3.72
387 388 2.099921 ACTCACTCACTCACTCACACAC 59.900 50.000 0.00 0.00 0.00 3.82
388 389 2.099405 TCACTCACTCACTCACACACA 58.901 47.619 0.00 0.00 0.00 3.72
389 390 2.159240 TCACTCACTCACTCACACACAC 60.159 50.000 0.00 0.00 0.00 3.82
390 391 1.824852 ACTCACTCACTCACACACACA 59.175 47.619 0.00 0.00 0.00 3.72
391 392 2.196749 CTCACTCACTCACACACACAC 58.803 52.381 0.00 0.00 0.00 3.82
392 393 1.548269 TCACTCACTCACACACACACA 59.452 47.619 0.00 0.00 0.00 3.72
393 394 1.660607 CACTCACTCACACACACACAC 59.339 52.381 0.00 0.00 0.00 3.82
394 395 1.275010 ACTCACTCACACACACACACA 59.725 47.619 0.00 0.00 0.00 3.72
395 396 2.289382 ACTCACTCACACACACACACAA 60.289 45.455 0.00 0.00 0.00 3.33
396 397 2.741517 CTCACTCACACACACACACAAA 59.258 45.455 0.00 0.00 0.00 2.83
397 398 2.482336 TCACTCACACACACACACAAAC 59.518 45.455 0.00 0.00 0.00 2.93
398 399 2.225255 CACTCACACACACACACAAACA 59.775 45.455 0.00 0.00 0.00 2.83
399 400 2.225491 ACTCACACACACACACAAACAC 59.775 45.455 0.00 0.00 0.00 3.32
400 401 2.222027 TCACACACACACACAAACACA 58.778 42.857 0.00 0.00 0.00 3.72
401 402 2.031595 TCACACACACACACAAACACAC 60.032 45.455 0.00 0.00 0.00 3.82
402 403 1.950216 ACACACACACACAAACACACA 59.050 42.857 0.00 0.00 0.00 3.72
403 404 2.287308 ACACACACACACAAACACACAC 60.287 45.455 0.00 0.00 0.00 3.82
404 405 1.950216 ACACACACACAAACACACACA 59.050 42.857 0.00 0.00 0.00 3.72
405 406 2.287308 ACACACACACAAACACACACAC 60.287 45.455 0.00 0.00 0.00 3.82
406 407 1.950216 ACACACACAAACACACACACA 59.050 42.857 0.00 0.00 0.00 3.72
407 408 2.287308 ACACACACAAACACACACACAC 60.287 45.455 0.00 0.00 0.00 3.82
408 409 1.950216 ACACACAAACACACACACACA 59.050 42.857 0.00 0.00 0.00 3.72
409 410 2.287308 ACACACAAACACACACACACAC 60.287 45.455 0.00 0.00 0.00 3.82
410 411 1.950216 ACACAAACACACACACACACA 59.050 42.857 0.00 0.00 0.00 3.72
411 412 2.287308 ACACAAACACACACACACACAC 60.287 45.455 0.00 0.00 0.00 3.82
412 413 1.950216 ACAAACACACACACACACACA 59.050 42.857 0.00 0.00 0.00 3.72
413 414 2.287308 ACAAACACACACACACACACAC 60.287 45.455 0.00 0.00 0.00 3.82
414 415 1.598882 AACACACACACACACACACA 58.401 45.000 0.00 0.00 0.00 3.72
415 416 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
416 417 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
417 418 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
418 419 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
419 420 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
420 421 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
421 422 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
422 423 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
423 424 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
424 425 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
425 426 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
426 427 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
427 428 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
428 429 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
429 430 1.265365 CACACACACACACACACACAA 59.735 47.619 0.00 0.00 0.00 3.33
430 431 1.950216 ACACACACACACACACACAAA 59.050 42.857 0.00 0.00 0.00 2.83
431 432 2.287308 ACACACACACACACACACAAAC 60.287 45.455 0.00 0.00 0.00 2.93
432 433 1.950216 ACACACACACACACACAAACA 59.050 42.857 0.00 0.00 0.00 2.83
433 434 2.287308 ACACACACACACACACAAACAC 60.287 45.455 0.00 0.00 0.00 3.32
434 435 1.950216 ACACACACACACACAAACACA 59.050 42.857 0.00 0.00 0.00 3.72
435 436 2.287308 ACACACACACACACAAACACAC 60.287 45.455 0.00 0.00 0.00 3.82
436 437 1.950216 ACACACACACACAAACACACA 59.050 42.857 0.00 0.00 0.00 3.72
437 438 2.287308 ACACACACACACAAACACACAC 60.287 45.455 0.00 0.00 0.00 3.82
438 439 1.950216 ACACACACACAAACACACACA 59.050 42.857 0.00 0.00 0.00 3.72
439 440 2.556189 ACACACACACAAACACACACAT 59.444 40.909 0.00 0.00 0.00 3.21
442 443 3.178267 CACACACAAACACACACATTCC 58.822 45.455 0.00 0.00 0.00 3.01
449 450 0.179032 ACACACACATTCCAAGCCGA 60.179 50.000 0.00 0.00 0.00 5.54
455 456 1.736645 CATTCCAAGCCGACGACGT 60.737 57.895 0.00 0.00 37.88 4.34
457 458 2.830704 ATTCCAAGCCGACGACGTCC 62.831 60.000 21.63 9.14 37.88 4.79
459 460 4.351938 CAAGCCGACGACGTCCCA 62.352 66.667 21.63 0.00 37.88 4.37
472 524 1.186200 CGTCCCACTCTTCATCCTCA 58.814 55.000 0.00 0.00 0.00 3.86
477 529 3.845992 TCCCACTCTTCATCCTCATTCAA 59.154 43.478 0.00 0.00 0.00 2.69
480 532 4.515361 CACTCTTCATCCTCATTCAAGCT 58.485 43.478 0.00 0.00 0.00 3.74
481 533 4.942483 CACTCTTCATCCTCATTCAAGCTT 59.058 41.667 0.00 0.00 0.00 3.74
482 534 5.415077 CACTCTTCATCCTCATTCAAGCTTT 59.585 40.000 0.00 0.00 0.00 3.51
493 545 1.317613 TCAAGCTTTGACGGTGCAAT 58.682 45.000 0.00 0.00 34.08 3.56
510 562 0.324943 AATGACAAGGAGGTGGACGG 59.675 55.000 0.00 0.00 0.00 4.79
514 566 2.683933 AAGGAGGTGGACGGCGAT 60.684 61.111 16.62 0.00 0.00 4.58
527 579 2.553172 GACGGCGATAGATTGGAGTAGT 59.447 50.000 16.62 0.00 39.76 2.73
531 583 3.321111 GGCGATAGATTGGAGTAGTGGAA 59.679 47.826 0.00 0.00 39.76 3.53
554 606 7.274904 GGAAAATATCCTAAAGTTGTTTTCGCC 59.725 37.037 0.00 0.00 45.56 5.54
561 613 5.458779 CCTAAAGTTGTTTTCGCCTTTTCTG 59.541 40.000 0.00 0.00 0.00 3.02
567 619 6.530181 AGTTGTTTTCGCCTTTTCTGTTTTAG 59.470 34.615 0.00 0.00 0.00 1.85
588 663 2.359981 TAGGGTGTCTCGTATCTGGG 57.640 55.000 0.00 0.00 0.00 4.45
590 665 1.567649 AGGGTGTCTCGTATCTGGGTA 59.432 52.381 0.00 0.00 0.00 3.69
591 666 1.680207 GGGTGTCTCGTATCTGGGTAC 59.320 57.143 0.00 0.00 0.00 3.34
593 668 2.098770 GGTGTCTCGTATCTGGGTACAC 59.901 54.545 0.00 0.00 36.02 2.90
594 669 2.098770 GTGTCTCGTATCTGGGTACACC 59.901 54.545 0.00 0.00 40.81 4.16
609 684 4.251268 GGTACACCCTGTATGTTGTTCTC 58.749 47.826 0.00 0.00 35.05 2.87
614 689 4.466370 CACCCTGTATGTTGTTCTCCTCTA 59.534 45.833 0.00 0.00 0.00 2.43
690 768 3.211963 GGGATGGCAAGCGCGAAT 61.212 61.111 12.10 0.00 39.92 3.34
691 769 1.891919 GGGATGGCAAGCGCGAATA 60.892 57.895 12.10 0.00 39.92 1.75
715 793 2.151202 CGAATGGTAGTTTGTGTGGCT 58.849 47.619 0.00 0.00 0.00 4.75
739 817 3.181459 GGGGTGGCATTTTACAAAACTGT 60.181 43.478 0.00 0.00 0.00 3.55
772 850 7.768582 AGTTTGTTTAATTTGGAGGGAGTTTTG 59.231 33.333 0.00 0.00 0.00 2.44
789 867 4.478206 TTTTGGGCAAAAACTGACATCA 57.522 36.364 0.00 0.00 37.35 3.07
807 885 6.097839 TGACATCATCAGATCAAGATCAGACA 59.902 38.462 12.21 1.65 40.22 3.41
866 944 5.568747 ACGTTCGGCAAATAACATTTTTG 57.431 34.783 0.00 0.00 37.18 2.44
872 950 7.644986 TCGGCAAATAACATTTTTGGTAAAG 57.355 32.000 0.00 0.00 35.18 1.85
874 952 8.091449 TCGGCAAATAACATTTTTGGTAAAGAT 58.909 29.630 0.00 0.00 35.18 2.40
909 988 1.092921 CCGGGAGAGACAGAGAGACG 61.093 65.000 0.00 0.00 0.00 4.18
929 1016 2.280865 CTCGGGGCGATTTAGGGC 60.281 66.667 0.00 0.00 34.61 5.19
934 1021 0.178990 GGGGCGATTTAGGGCAGAAT 60.179 55.000 0.00 0.00 0.00 2.40
978 1070 0.968901 AACCGTGACTGGATCGGCTA 60.969 55.000 2.72 0.00 46.92 3.93
1011 1103 4.933064 GCGGCGATGGAGGAGACG 62.933 72.222 12.98 0.00 39.77 4.18
1055 1174 2.456119 CGCGTGCTAAGAAGGCCAG 61.456 63.158 5.01 0.00 0.00 4.85
1062 1181 1.899437 CTAAGAAGGCCAGGGACGCA 61.899 60.000 5.01 0.00 0.00 5.24
1097 1216 1.078759 GACGACATGGCGACCAAGAG 61.079 60.000 31.27 0.00 36.95 2.85
1098 1217 2.456119 CGACATGGCGACCAAGAGC 61.456 63.158 18.41 0.51 36.95 4.09
1099 1218 1.375908 GACATGGCGACCAAGAGCA 60.376 57.895 7.87 0.00 36.95 4.26
1100 1219 0.955428 GACATGGCGACCAAGAGCAA 60.955 55.000 7.87 0.00 36.95 3.91
1101 1220 0.957395 ACATGGCGACCAAGAGCAAG 60.957 55.000 7.87 0.00 36.95 4.01
1102 1221 0.674581 CATGGCGACCAAGAGCAAGA 60.675 55.000 2.68 0.00 36.95 3.02
1105 1224 1.004440 GCGACCAAGAGCAAGACCT 60.004 57.895 0.00 0.00 0.00 3.85
1109 1228 2.672478 CGACCAAGAGCAAGACCTACTG 60.672 54.545 0.00 0.00 0.00 2.74
1154 1273 3.878519 GGAGTCTCGTCGCCTCCG 61.879 72.222 8.90 0.00 35.79 4.63
1206 1325 2.187946 CCTGGTCCGGCTGATGAC 59.812 66.667 0.00 0.00 0.00 3.06
1318 1444 3.189618 CCCCCGACTTCAGGTAATTAC 57.810 52.381 7.09 7.09 0.00 1.89
1325 1451 4.201753 CGACTTCAGGTAATTACTCGACGA 60.202 45.833 15.05 0.00 0.00 4.20
1380 1534 1.434555 GTGGCGTGCTATGTGTTGTA 58.565 50.000 0.00 0.00 0.00 2.41
1381 1535 2.006888 GTGGCGTGCTATGTGTTGTAT 58.993 47.619 0.00 0.00 0.00 2.29
1382 1536 2.030457 GTGGCGTGCTATGTGTTGTATC 59.970 50.000 0.00 0.00 0.00 2.24
1383 1537 1.257936 GGCGTGCTATGTGTTGTATCG 59.742 52.381 0.00 0.00 0.00 2.92
1384 1538 1.924524 GCGTGCTATGTGTTGTATCGT 59.075 47.619 0.00 0.00 0.00 3.73
1437 1591 6.926272 AGATAAAAGCTCTGAATCACGATACC 59.074 38.462 0.00 0.00 0.00 2.73
1537 1691 5.706916 CAATTAGCTGCAGTCAATCAAACT 58.293 37.500 16.64 2.70 0.00 2.66
1540 1694 4.660789 AGCTGCAGTCAATCAAACTTTT 57.339 36.364 16.64 0.00 0.00 2.27
1622 1780 4.445452 ACAATGCAAGGTGCTTATGAAG 57.555 40.909 0.00 0.00 45.31 3.02
1631 1789 2.239907 GGTGCTTATGAAGAGGAACCCT 59.760 50.000 0.00 0.00 36.03 4.34
1691 1849 4.618927 GCCTCTGCAATATGAAAAAGCACA 60.619 41.667 0.00 0.00 37.47 4.57
1732 1890 5.070001 TGGTTTATTCTTACAAGCACTGCT 58.930 37.500 0.00 0.00 42.56 4.24
1784 1942 9.612620 CTAGTGGTTTGTCATGAAAATTACTTC 57.387 33.333 12.43 3.04 0.00 3.01
1878 2038 8.993121 CAGTAATTAAGTGAAGTCAGTCATTGT 58.007 33.333 0.00 0.00 0.00 2.71
1917 2077 6.748198 TGTTTTGTTTTACCTTGCTAACTTCG 59.252 34.615 0.00 0.00 0.00 3.79
1929 2089 4.794169 TGCTAACTTCGCCAATTTCTTTC 58.206 39.130 0.00 0.00 0.00 2.62
1964 2125 1.274728 GCTGATCAGGGCGATGAGTAT 59.725 52.381 23.89 0.00 37.64 2.12
2052 2213 0.600255 CTTTGTGGCTCGTCGGAAGT 60.600 55.000 0.00 0.00 0.00 3.01
2073 2234 1.004560 TCTGGCTGCTTGTCCTTCG 60.005 57.895 0.00 0.00 0.00 3.79
2180 2344 7.434492 GTTGGTATCTACTTGCTAGCTTGATA 58.566 38.462 17.23 9.07 0.00 2.15
2205 2378 2.012673 CTTACCTCTCTGTTGCCATGC 58.987 52.381 0.00 0.00 0.00 4.06
2214 2387 2.284039 TTGCCATGCCATGCACCT 60.284 55.556 0.00 0.00 43.04 4.00
2262 2437 5.860941 TTTCATCATCTGGAGAGGTCTAC 57.139 43.478 0.00 0.00 0.00 2.59
2265 2440 4.079500 TCATCATCTGGAGAGGTCTACTGT 60.080 45.833 0.00 0.00 0.00 3.55
2335 2520 2.095461 GAAGCCCTCTGGAAACCAATC 58.905 52.381 0.00 0.00 30.80 2.67
2432 2617 0.393808 GGCCCATGCTTTTACGAGGA 60.394 55.000 0.00 0.00 37.74 3.71
2446 2631 6.401047 TTTACGAGGATGAGTAGTTATGGG 57.599 41.667 0.00 0.00 0.00 4.00
2611 2804 7.081526 AGAAGTTTATCTGTGCAGCTAATTG 57.918 36.000 0.00 0.00 0.00 2.32
2616 2809 8.258007 AGTTTATCTGTGCAGCTAATTGTACTA 58.742 33.333 0.00 0.00 35.12 1.82
2649 2842 0.890683 CATGCTTCTGTGTTTCCCCC 59.109 55.000 0.00 0.00 0.00 5.40
2666 2859 2.242196 CCCCCTCCAATGTATTCTGTGT 59.758 50.000 0.00 0.00 0.00 3.72
2791 2984 7.036863 TGGTCCATCTTCCTTAGATTACCTTTT 60.037 37.037 13.25 0.00 41.78 2.27
2792 2985 8.491958 GGTCCATCTTCCTTAGATTACCTTTTA 58.508 37.037 0.00 0.00 41.78 1.52
3040 3241 5.389859 CTGATCACTTCAGCTCCTATAGG 57.610 47.826 13.07 13.07 45.16 2.57
3052 3253 3.137446 TCCTATAGGAGTGCTACGTCC 57.863 52.381 18.00 0.00 39.78 4.79
3199 3410 8.950007 TTTAGATGTTCCCTTTCCTGTTTAAT 57.050 30.769 0.00 0.00 0.00 1.40
3207 3418 8.364894 GTTCCCTTTCCTGTTTAATGTTTATGT 58.635 33.333 0.00 0.00 0.00 2.29
3291 3510 6.917217 ACTTTATCTCTCTTTGCACATAGC 57.083 37.500 0.00 0.00 45.96 2.97
3507 3762 0.175302 TGTTGCTTGGCCTGTGTTTG 59.825 50.000 3.32 0.00 0.00 2.93
3691 3946 3.614092 GCCATCACCAAGAGATCTTTGA 58.386 45.455 15.13 0.86 33.11 2.69
3700 3955 5.067805 ACCAAGAGATCTTTGAAAAGCGTTT 59.932 36.000 15.13 0.00 35.99 3.60
3701 3956 5.979517 CCAAGAGATCTTTGAAAAGCGTTTT 59.020 36.000 15.13 0.00 35.99 2.43
3717 3972 3.123116 GCGTTTTTGCTCCTACTACTGAC 59.877 47.826 0.00 0.00 0.00 3.51
3718 3973 4.557205 CGTTTTTGCTCCTACTACTGACT 58.443 43.478 0.00 0.00 0.00 3.41
3719 3974 5.706916 CGTTTTTGCTCCTACTACTGACTA 58.293 41.667 0.00 0.00 0.00 2.59
3720 3975 5.572126 CGTTTTTGCTCCTACTACTGACTAC 59.428 44.000 0.00 0.00 0.00 2.73
3721 3976 6.569994 CGTTTTTGCTCCTACTACTGACTACT 60.570 42.308 0.00 0.00 0.00 2.57
3722 3977 5.899120 TTTGCTCCTACTACTGACTACTG 57.101 43.478 0.00 0.00 0.00 2.74
3723 3978 4.838904 TGCTCCTACTACTGACTACTGA 57.161 45.455 0.00 0.00 0.00 3.41
3742 3997 3.978272 CAGTGAGCCCTGCTTCAC 58.022 61.111 9.27 9.27 39.88 3.18
3743 3998 1.673665 CAGTGAGCCCTGCTTCACC 60.674 63.158 12.06 0.00 39.88 4.02
3782 4045 5.639506 AGAAAACAGACTTGTCGTATGATGG 59.360 40.000 0.00 0.00 36.99 3.51
3802 4065 7.375053 TGATGGTTTAGTTAGATTTTGTTGGC 58.625 34.615 0.00 0.00 0.00 4.52
3803 4066 5.764131 TGGTTTAGTTAGATTTTGTTGGCG 58.236 37.500 0.00 0.00 0.00 5.69
3804 4067 5.158494 GGTTTAGTTAGATTTTGTTGGCGG 58.842 41.667 0.00 0.00 0.00 6.13
3805 4068 5.048573 GGTTTAGTTAGATTTTGTTGGCGGA 60.049 40.000 0.00 0.00 0.00 5.54
3806 4069 5.873179 TTAGTTAGATTTTGTTGGCGGAG 57.127 39.130 0.00 0.00 0.00 4.63
3841 4114 5.941058 TGCCTTTTCGAATGACCTATGTAAA 59.059 36.000 0.00 0.00 0.00 2.01
3844 4117 7.973944 GCCTTTTCGAATGACCTATGTAAATTT 59.026 33.333 0.00 0.00 0.00 1.82
3855 4128 8.792633 TGACCTATGTAAATTTTATAGCATGCC 58.207 33.333 15.66 0.00 0.00 4.40
3856 4129 8.940397 ACCTATGTAAATTTTATAGCATGCCT 57.060 30.769 15.66 4.66 0.00 4.75
3857 4130 9.367160 ACCTATGTAAATTTTATAGCATGCCTT 57.633 29.630 15.66 4.45 0.00 4.35
3861 4134 8.627487 TGTAAATTTTATAGCATGCCTTTTCG 57.373 30.769 15.66 0.00 0.00 3.46
3862 4135 8.462811 TGTAAATTTTATAGCATGCCTTTTCGA 58.537 29.630 15.66 0.00 0.00 3.71
3864 4137 8.947055 AAATTTTATAGCATGCCTTTTCGAAT 57.053 26.923 15.66 3.94 0.00 3.34
3865 4138 7.935338 ATTTTATAGCATGCCTTTTCGAATG 57.065 32.000 15.66 0.00 0.00 2.67
3867 4140 2.927553 AGCATGCCTTTTCGAATGAC 57.072 45.000 15.66 0.00 0.00 3.06
3868 4141 1.474077 AGCATGCCTTTTCGAATGACC 59.526 47.619 15.66 0.00 0.00 4.02
3869 4142 1.474077 GCATGCCTTTTCGAATGACCT 59.526 47.619 6.36 0.00 0.00 3.85
3870 4143 2.682856 GCATGCCTTTTCGAATGACCTA 59.317 45.455 6.36 0.00 0.00 3.08
3871 4144 3.316308 GCATGCCTTTTCGAATGACCTAT 59.684 43.478 6.36 0.00 0.00 2.57
3872 4145 4.790766 GCATGCCTTTTCGAATGACCTATG 60.791 45.833 6.36 1.92 0.00 2.23
3873 4146 3.950397 TGCCTTTTCGAATGACCTATGT 58.050 40.909 0.00 0.00 0.00 2.29
3874 4147 5.092554 TGCCTTTTCGAATGACCTATGTA 57.907 39.130 0.00 0.00 0.00 2.29
3875 4148 5.492895 TGCCTTTTCGAATGACCTATGTAA 58.507 37.500 0.00 0.00 0.00 2.41
3876 4149 5.941058 TGCCTTTTCGAATGACCTATGTAAA 59.059 36.000 0.00 0.00 0.00 2.01
3877 4150 6.601613 TGCCTTTTCGAATGACCTATGTAAAT 59.398 34.615 0.00 0.00 0.00 1.40
3878 4151 7.122055 TGCCTTTTCGAATGACCTATGTAAATT 59.878 33.333 0.00 0.00 0.00 1.82
3879 4152 7.973944 GCCTTTTCGAATGACCTATGTAAATTT 59.026 33.333 0.00 0.00 0.00 1.82
3916 4189 7.772332 AGTATGCCTTTTCGAATTACTAGTG 57.228 36.000 5.39 0.00 0.00 2.74
3917 4190 6.761714 AGTATGCCTTTTCGAATTACTAGTGG 59.238 38.462 5.39 0.00 0.00 4.00
3918 4191 4.258543 TGCCTTTTCGAATTACTAGTGGG 58.741 43.478 5.39 0.00 0.00 4.61
3919 4192 3.064958 GCCTTTTCGAATTACTAGTGGGC 59.935 47.826 5.39 0.00 0.00 5.36
3953 4229 8.547967 AAACTTGTATAAGTATGACCACTGTG 57.452 34.615 5.19 0.00 46.14 3.66
3990 4268 3.247648 GTGCTTCAGTGTACATCGTTTGT 59.752 43.478 0.00 0.00 42.62 2.83
3991 4269 3.247411 TGCTTCAGTGTACATCGTTTGTG 59.753 43.478 0.00 0.00 39.48 3.33
3992 4270 3.799035 CTTCAGTGTACATCGTTTGTGC 58.201 45.455 0.00 3.81 39.48 4.57
3993 4271 3.106242 TCAGTGTACATCGTTTGTGCT 57.894 42.857 0.00 0.00 41.13 4.40
3994 4272 3.462982 TCAGTGTACATCGTTTGTGCTT 58.537 40.909 0.00 0.00 41.13 3.91
3995 4273 3.493129 TCAGTGTACATCGTTTGTGCTTC 59.507 43.478 0.00 4.87 41.13 3.86
3998 4276 2.546368 TGTACATCGTTTGTGCTTCACC 59.454 45.455 0.00 0.00 41.13 4.02
4000 4278 0.586319 CATCGTTTGTGCTTCACCGT 59.414 50.000 0.00 0.00 32.73 4.83
4001 4279 0.865769 ATCGTTTGTGCTTCACCGTC 59.134 50.000 0.00 0.00 32.73 4.79
4136 4443 5.012239 TGCAAGAAAGCTAAATGTCATCCT 58.988 37.500 0.00 0.00 34.99 3.24
4153 4460 3.777106 TCCTGCTGATATTGGGATGAC 57.223 47.619 0.00 0.00 0.00 3.06
4198 4505 9.965902 ATAGATAGCTTTGGATTCCGAAATAAT 57.034 29.630 6.82 0.97 0.00 1.28
4200 4508 8.571336 AGATAGCTTTGGATTCCGAAATAATTG 58.429 33.333 6.82 0.00 0.00 2.32
4291 4609 3.196039 TGCATGACCATTCCATTTTCCTG 59.804 43.478 0.00 0.00 0.00 3.86
4330 4648 5.083533 TGTTCACCATTATTGGAAATGCC 57.916 39.130 10.62 0.00 46.92 4.40
4347 4665 6.292919 GGAAATGCCGAATACTTCTGTATCAC 60.293 42.308 0.00 0.00 38.33 3.06
4386 4704 9.225682 TGGATTATCTCTCCAAATAGTTTAGGT 57.774 33.333 0.00 0.00 39.83 3.08
4457 4775 9.086336 GTTTGCAATATAAAAAGCTATCTTGCA 57.914 29.630 13.16 13.16 43.73 4.08
4518 4836 5.809001 TGATGAGAAAACAACATAGCTCCT 58.191 37.500 0.00 0.00 0.00 3.69
4523 4841 6.147164 TGAGAAAACAACATAGCTCCTAAACG 59.853 38.462 0.00 0.00 0.00 3.60
4532 4850 3.512033 AGCTCCTAAACGACATCTCAC 57.488 47.619 0.00 0.00 0.00 3.51
4541 4859 1.899814 ACGACATCTCACCTAAAGGCA 59.100 47.619 0.00 0.00 39.32 4.75
4542 4860 2.501723 ACGACATCTCACCTAAAGGCAT 59.498 45.455 0.00 0.00 39.32 4.40
4554 4872 6.639676 ACCTAAAGGCATACCAACCTGTGG 62.640 50.000 0.00 0.00 46.41 4.17
4567 4898 4.019681 CCAACCTGTGGTTAGATGGTTAGA 60.020 45.833 1.34 0.00 45.01 2.10
4576 4907 5.546499 TGGTTAGATGGTTAGAAGGACAGTT 59.454 40.000 0.00 0.00 0.00 3.16
4579 4910 7.310237 GGTTAGATGGTTAGAAGGACAGTTGTA 60.310 40.741 0.00 0.00 0.00 2.41
4582 4913 5.068234 TGGTTAGAAGGACAGTTGTATCG 57.932 43.478 0.00 0.00 0.00 2.92
4599 4930 1.817099 CGCCAGCCCATCAGAGTTC 60.817 63.158 0.00 0.00 0.00 3.01
4605 4936 2.027377 CAGCCCATCAGAGTTCAAGTCT 60.027 50.000 0.00 0.00 0.00 3.24
4608 4939 4.287067 AGCCCATCAGAGTTCAAGTCTTAA 59.713 41.667 0.00 0.00 0.00 1.85
4625 4956 4.024809 GTCTTAAACTTGACACTGGTGCTC 60.025 45.833 0.17 0.00 33.75 4.26
4626 4957 2.418368 AAACTTGACACTGGTGCTCA 57.582 45.000 0.17 2.06 0.00 4.26
4641 4972 6.995091 ACTGGTGCTCATATTTTCCTAGATTC 59.005 38.462 0.00 0.00 0.00 2.52
4642 4973 6.899089 TGGTGCTCATATTTTCCTAGATTCA 58.101 36.000 0.00 0.00 0.00 2.57
4644 4975 8.000709 TGGTGCTCATATTTTCCTAGATTCATT 58.999 33.333 0.00 0.00 0.00 2.57
4645 4976 8.854117 GGTGCTCATATTTTCCTAGATTCATTT 58.146 33.333 0.00 0.00 0.00 2.32
4646 4977 9.890352 GTGCTCATATTTTCCTAGATTCATTTC 57.110 33.333 0.00 0.00 0.00 2.17
4656 4987 7.257790 TCCTAGATTCATTTCAAGTCTTCCA 57.742 36.000 0.00 0.00 0.00 3.53
4659 4990 5.568392 AGATTCATTTCAAGTCTTCCAGCT 58.432 37.500 0.00 0.00 0.00 4.24
4664 4995 6.946340 TCATTTCAAGTCTTCCAGCTATGTA 58.054 36.000 0.00 0.00 0.00 2.29
4669 5000 4.803098 AGTCTTCCAGCTATGTACGTTT 57.197 40.909 0.00 0.00 0.00 3.60
4673 5004 4.098960 TCTTCCAGCTATGTACGTTTAGGG 59.901 45.833 0.00 0.00 0.00 3.53
4678 5009 2.036862 GCTATGTACGTTTAGGGGAGGG 59.963 54.545 0.00 0.00 0.00 4.30
4681 5012 1.008693 TGTACGTTTAGGGGAGGGGAT 59.991 52.381 0.00 0.00 0.00 3.85
4687 5018 0.693092 TTAGGGGAGGGGATGTTCCG 60.693 60.000 0.00 0.00 37.43 4.30
4688 5019 2.615191 TAGGGGAGGGGATGTTCCGG 62.615 65.000 0.00 0.00 37.43 5.14
4689 5020 2.691252 GGGAGGGGATGTTCCGGT 60.691 66.667 0.00 0.00 37.43 5.28
4690 5021 1.383525 GGGAGGGGATGTTCCGGTA 60.384 63.158 0.00 0.00 37.43 4.02
4691 5022 0.984432 GGGAGGGGATGTTCCGGTAA 60.984 60.000 0.00 0.00 37.43 2.85
4692 5023 1.137697 GGAGGGGATGTTCCGGTAAT 58.862 55.000 0.00 0.00 37.43 1.89
4693 5024 1.202770 GGAGGGGATGTTCCGGTAATG 60.203 57.143 0.00 0.00 37.43 1.90
4694 5025 0.182775 AGGGGATGTTCCGGTAATGC 59.817 55.000 0.00 0.00 37.43 3.56
4695 5026 1.164041 GGGGATGTTCCGGTAATGCG 61.164 60.000 0.00 0.00 37.43 4.73
4696 5027 0.463116 GGGATGTTCCGGTAATGCGT 60.463 55.000 0.00 0.00 37.43 5.24
4697 5028 1.202557 GGGATGTTCCGGTAATGCGTA 60.203 52.381 0.00 0.00 37.43 4.42
4698 5029 2.549349 GGGATGTTCCGGTAATGCGTAT 60.549 50.000 0.00 0.00 37.43 3.06
4699 5030 2.478894 GGATGTTCCGGTAATGCGTATG 59.521 50.000 0.00 0.00 0.00 2.39
4700 5031 2.676632 TGTTCCGGTAATGCGTATGT 57.323 45.000 0.00 0.00 0.00 2.29
4701 5032 2.272678 TGTTCCGGTAATGCGTATGTG 58.727 47.619 0.00 0.00 0.00 3.21
4702 5033 1.595794 GTTCCGGTAATGCGTATGTGG 59.404 52.381 0.00 0.00 0.00 4.17
4703 5034 0.531090 TCCGGTAATGCGTATGTGGC 60.531 55.000 0.00 0.00 0.00 5.01
4704 5035 1.562691 CGGTAATGCGTATGTGGCG 59.437 57.895 0.00 0.00 0.00 5.69
4705 5036 0.872451 CGGTAATGCGTATGTGGCGA 60.872 55.000 0.00 0.00 0.00 5.54
4706 5037 0.580104 GGTAATGCGTATGTGGCGAC 59.420 55.000 0.00 0.00 0.00 5.19
4707 5038 1.567504 GTAATGCGTATGTGGCGACT 58.432 50.000 0.00 0.00 0.00 4.18
4708 5039 1.931172 GTAATGCGTATGTGGCGACTT 59.069 47.619 0.00 0.00 0.00 3.01
4709 5040 1.448985 AATGCGTATGTGGCGACTTT 58.551 45.000 0.00 0.00 0.00 2.66
4710 5041 0.726827 ATGCGTATGTGGCGACTTTG 59.273 50.000 0.00 0.00 0.00 2.77
4711 5042 0.601576 TGCGTATGTGGCGACTTTGT 60.602 50.000 0.00 0.00 0.00 2.83
4712 5043 0.094730 GCGTATGTGGCGACTTTGTC 59.905 55.000 0.00 0.00 0.00 3.18
4713 5044 1.424403 CGTATGTGGCGACTTTGTCA 58.576 50.000 0.00 0.00 32.09 3.58
4714 5045 1.795872 CGTATGTGGCGACTTTGTCAA 59.204 47.619 0.00 0.00 32.09 3.18
4715 5046 2.415168 CGTATGTGGCGACTTTGTCAAT 59.585 45.455 0.00 0.00 32.09 2.57
4716 5047 3.483574 CGTATGTGGCGACTTTGTCAATC 60.484 47.826 0.00 0.00 32.09 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 8.473219 TCATATATTAATTGCACAACTTTGGCA 58.527 29.630 0.00 2.22 34.25 4.92
94 95 5.520288 GTCAGTGATATGTTGCAGACGTATT 59.480 40.000 0.00 0.00 39.89 1.89
103 104 5.376854 ACTTTTGGTCAGTGATATGTTGC 57.623 39.130 0.00 0.00 0.00 4.17
114 115 2.763448 TGGGTTTTGGACTTTTGGTCAG 59.237 45.455 0.00 0.00 46.16 3.51
124 125 6.994421 ATTATTATGGGATGGGTTTTGGAC 57.006 37.500 0.00 0.00 0.00 4.02
125 126 7.245292 CCTATTATTATGGGATGGGTTTTGGA 58.755 38.462 0.00 0.00 34.43 3.53
126 127 6.440328 CCCTATTATTATGGGATGGGTTTTGG 59.560 42.308 0.00 0.00 43.47 3.28
127 128 7.016296 ACCCTATTATTATGGGATGGGTTTTG 58.984 38.462 4.11 0.00 43.41 2.44
128 129 7.187148 ACCCTATTATTATGGGATGGGTTTT 57.813 36.000 4.11 0.00 43.41 2.43
129 130 6.813724 ACCCTATTATTATGGGATGGGTTT 57.186 37.500 4.11 0.00 43.41 3.27
130 131 7.915209 TTACCCTATTATTATGGGATGGGTT 57.085 36.000 5.66 0.00 43.41 4.11
131 132 8.490747 AATTACCCTATTATTATGGGATGGGT 57.509 34.615 4.11 0.00 46.93 4.51
161 162 0.179119 CCTGTTACCCGACCATCGAC 60.179 60.000 0.00 0.00 43.74 4.20
194 195 1.955778 AGCGAGATGGATGAGAGTGAG 59.044 52.381 0.00 0.00 0.00 3.51
228 229 1.299165 CGTCCGATAAGTCAGGCGG 60.299 63.158 0.00 0.00 44.83 6.13
230 231 0.595310 GCTCGTCCGATAAGTCAGGC 60.595 60.000 0.00 0.00 0.00 4.85
239 240 0.535553 GGTAGGAGAGCTCGTCCGAT 60.536 60.000 19.96 10.86 39.30 4.18
241 242 1.440938 CTGGTAGGAGAGCTCGTCCG 61.441 65.000 19.96 7.64 39.30 4.79
242 243 1.730451 GCTGGTAGGAGAGCTCGTCC 61.730 65.000 19.05 19.05 32.12 4.79
255 256 4.791069 GGGAGGGGGTCGCTGGTA 62.791 72.222 0.00 0.00 35.21 3.25
262 263 2.203549 CTGAGCAAAGGGAGGGGGTC 62.204 65.000 0.00 0.00 0.00 4.46
264 265 2.203549 GACTGAGCAAAGGGAGGGGG 62.204 65.000 0.00 0.00 0.00 5.40
274 275 1.070134 AGTAGCGGTTTGACTGAGCAA 59.930 47.619 0.00 0.00 0.00 3.91
275 276 0.679505 AGTAGCGGTTTGACTGAGCA 59.320 50.000 0.00 0.00 0.00 4.26
282 283 1.001633 GGTGGAGAAGTAGCGGTTTGA 59.998 52.381 0.00 0.00 0.00 2.69
297 298 3.248248 AAGGGCGAGGTAGGGTGGA 62.248 63.158 0.00 0.00 0.00 4.02
301 302 0.688087 AAGAGAAGGGCGAGGTAGGG 60.688 60.000 0.00 0.00 0.00 3.53
302 303 1.137282 GAAAGAGAAGGGCGAGGTAGG 59.863 57.143 0.00 0.00 0.00 3.18
303 304 2.100087 GAGAAAGAGAAGGGCGAGGTAG 59.900 54.545 0.00 0.00 0.00 3.18
304 305 2.100989 GAGAAAGAGAAGGGCGAGGTA 58.899 52.381 0.00 0.00 0.00 3.08
305 306 0.899019 GAGAAAGAGAAGGGCGAGGT 59.101 55.000 0.00 0.00 0.00 3.85
306 307 0.176910 GGAGAAAGAGAAGGGCGAGG 59.823 60.000 0.00 0.00 0.00 4.63
307 308 1.190643 AGGAGAAAGAGAAGGGCGAG 58.809 55.000 0.00 0.00 0.00 5.03
308 309 1.550976 GAAGGAGAAAGAGAAGGGCGA 59.449 52.381 0.00 0.00 0.00 5.54
309 310 1.552792 AGAAGGAGAAAGAGAAGGGCG 59.447 52.381 0.00 0.00 0.00 6.13
310 311 2.093181 GGAGAAGGAGAAAGAGAAGGGC 60.093 54.545 0.00 0.00 0.00 5.19
311 312 2.167487 CGGAGAAGGAGAAAGAGAAGGG 59.833 54.545 0.00 0.00 0.00 3.95
342 343 2.777692 GAGAGAGAGAGAGAAGGGAGGA 59.222 54.545 0.00 0.00 0.00 3.71
343 344 2.780010 AGAGAGAGAGAGAGAAGGGAGG 59.220 54.545 0.00 0.00 0.00 4.30
345 346 3.199946 GTGAGAGAGAGAGAGAGAAGGGA 59.800 52.174 0.00 0.00 0.00 4.20
346 347 3.200825 AGTGAGAGAGAGAGAGAGAAGGG 59.799 52.174 0.00 0.00 0.00 3.95
347 348 4.080919 TGAGTGAGAGAGAGAGAGAGAAGG 60.081 50.000 0.00 0.00 0.00 3.46
348 349 4.872691 GTGAGTGAGAGAGAGAGAGAGAAG 59.127 50.000 0.00 0.00 0.00 2.85
349 350 4.532126 AGTGAGTGAGAGAGAGAGAGAGAA 59.468 45.833 0.00 0.00 0.00 2.87
366 367 2.099921 GTGTGTGAGTGAGTGAGTGAGT 59.900 50.000 0.00 0.00 0.00 3.41
370 371 1.824852 TGTGTGTGTGAGTGAGTGAGT 59.175 47.619 0.00 0.00 0.00 3.41
374 375 1.275010 TGTGTGTGTGTGTGAGTGAGT 59.725 47.619 0.00 0.00 0.00 3.41
378 379 2.225491 GTGTTTGTGTGTGTGTGTGAGT 59.775 45.455 0.00 0.00 0.00 3.41
382 383 1.950216 TGTGTGTTTGTGTGTGTGTGT 59.050 42.857 0.00 0.00 0.00 3.72
383 384 2.287248 TGTGTGTGTTTGTGTGTGTGTG 60.287 45.455 0.00 0.00 0.00 3.82
384 385 1.950216 TGTGTGTGTTTGTGTGTGTGT 59.050 42.857 0.00 0.00 0.00 3.72
385 386 2.287248 TGTGTGTGTGTTTGTGTGTGTG 60.287 45.455 0.00 0.00 0.00 3.82
386 387 1.950216 TGTGTGTGTGTTTGTGTGTGT 59.050 42.857 0.00 0.00 0.00 3.72
387 388 2.287248 TGTGTGTGTGTGTTTGTGTGTG 60.287 45.455 0.00 0.00 0.00 3.82
388 389 1.950216 TGTGTGTGTGTGTTTGTGTGT 59.050 42.857 0.00 0.00 0.00 3.72
389 390 2.287248 TGTGTGTGTGTGTGTTTGTGTG 60.287 45.455 0.00 0.00 0.00 3.82
390 391 1.950216 TGTGTGTGTGTGTGTTTGTGT 59.050 42.857 0.00 0.00 0.00 3.72
391 392 2.287248 TGTGTGTGTGTGTGTGTTTGTG 60.287 45.455 0.00 0.00 0.00 3.33
392 393 1.950216 TGTGTGTGTGTGTGTGTTTGT 59.050 42.857 0.00 0.00 0.00 2.83
393 394 2.287248 TGTGTGTGTGTGTGTGTGTTTG 60.287 45.455 0.00 0.00 0.00 2.93
394 395 1.950216 TGTGTGTGTGTGTGTGTGTTT 59.050 42.857 0.00 0.00 0.00 2.83
395 396 1.265635 GTGTGTGTGTGTGTGTGTGTT 59.734 47.619 0.00 0.00 0.00 3.32
396 397 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
397 398 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
398 399 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
399 400 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
400 401 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
401 402 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
402 403 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
403 404 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
404 405 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
405 406 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
406 407 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
407 408 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
408 409 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
409 410 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
410 411 1.598882 TTGTGTGTGTGTGTGTGTGT 58.401 45.000 0.00 0.00 0.00 3.72
411 412 2.287248 TGTTTGTGTGTGTGTGTGTGTG 60.287 45.455 0.00 0.00 0.00 3.82
412 413 1.950216 TGTTTGTGTGTGTGTGTGTGT 59.050 42.857 0.00 0.00 0.00 3.72
413 414 2.287248 TGTGTTTGTGTGTGTGTGTGTG 60.287 45.455 0.00 0.00 0.00 3.82
414 415 1.950216 TGTGTTTGTGTGTGTGTGTGT 59.050 42.857 0.00 0.00 0.00 3.72
415 416 2.287248 TGTGTGTTTGTGTGTGTGTGTG 60.287 45.455 0.00 0.00 0.00 3.82
416 417 1.950216 TGTGTGTTTGTGTGTGTGTGT 59.050 42.857 0.00 0.00 0.00 3.72
417 418 2.287248 TGTGTGTGTTTGTGTGTGTGTG 60.287 45.455 0.00 0.00 0.00 3.82
418 419 1.950216 TGTGTGTGTTTGTGTGTGTGT 59.050 42.857 0.00 0.00 0.00 3.72
419 420 2.695613 TGTGTGTGTTTGTGTGTGTG 57.304 45.000 0.00 0.00 0.00 3.82
420 421 3.366883 GGAATGTGTGTGTTTGTGTGTGT 60.367 43.478 0.00 0.00 0.00 3.72
421 422 3.178267 GGAATGTGTGTGTTTGTGTGTG 58.822 45.455 0.00 0.00 0.00 3.82
422 423 2.822561 TGGAATGTGTGTGTTTGTGTGT 59.177 40.909 0.00 0.00 0.00 3.72
423 424 3.500558 TGGAATGTGTGTGTTTGTGTG 57.499 42.857 0.00 0.00 0.00 3.82
424 425 3.675775 GCTTGGAATGTGTGTGTTTGTGT 60.676 43.478 0.00 0.00 0.00 3.72
425 426 2.859538 GCTTGGAATGTGTGTGTTTGTG 59.140 45.455 0.00 0.00 0.00 3.33
426 427 2.159114 GGCTTGGAATGTGTGTGTTTGT 60.159 45.455 0.00 0.00 0.00 2.83
427 428 2.472816 GGCTTGGAATGTGTGTGTTTG 58.527 47.619 0.00 0.00 0.00 2.93
428 429 1.066908 CGGCTTGGAATGTGTGTGTTT 59.933 47.619 0.00 0.00 0.00 2.83
429 430 0.667993 CGGCTTGGAATGTGTGTGTT 59.332 50.000 0.00 0.00 0.00 3.32
430 431 0.179032 TCGGCTTGGAATGTGTGTGT 60.179 50.000 0.00 0.00 0.00 3.72
431 432 0.238289 GTCGGCTTGGAATGTGTGTG 59.762 55.000 0.00 0.00 0.00 3.82
432 433 1.227999 CGTCGGCTTGGAATGTGTGT 61.228 55.000 0.00 0.00 0.00 3.72
433 434 0.948623 TCGTCGGCTTGGAATGTGTG 60.949 55.000 0.00 0.00 0.00 3.82
434 435 0.949105 GTCGTCGGCTTGGAATGTGT 60.949 55.000 0.00 0.00 0.00 3.72
435 436 1.787847 GTCGTCGGCTTGGAATGTG 59.212 57.895 0.00 0.00 0.00 3.21
436 437 1.736645 CGTCGTCGGCTTGGAATGT 60.737 57.895 0.00 0.00 0.00 2.71
437 438 1.683790 GACGTCGTCGGCTTGGAATG 61.684 60.000 10.05 0.00 42.52 2.67
438 439 1.445582 GACGTCGTCGGCTTGGAAT 60.446 57.895 10.05 0.00 42.52 3.01
439 440 2.049802 GACGTCGTCGGCTTGGAA 60.050 61.111 10.05 0.00 42.52 3.53
442 443 4.351938 TGGGACGTCGTCGGCTTG 62.352 66.667 18.61 0.00 45.51 4.01
449 450 0.526662 GATGAAGAGTGGGACGTCGT 59.473 55.000 9.92 0.00 0.00 4.34
455 456 3.453868 TGAATGAGGATGAAGAGTGGGA 58.546 45.455 0.00 0.00 0.00 4.37
457 458 3.626670 GCTTGAATGAGGATGAAGAGTGG 59.373 47.826 0.00 0.00 0.00 4.00
458 459 4.515361 AGCTTGAATGAGGATGAAGAGTG 58.485 43.478 0.00 0.00 0.00 3.51
459 460 4.840716 AGCTTGAATGAGGATGAAGAGT 57.159 40.909 0.00 0.00 0.00 3.24
472 524 1.317613 TGCACCGTCAAAGCTTGAAT 58.682 45.000 0.00 0.00 42.15 2.57
477 529 0.593128 GTCATTGCACCGTCAAAGCT 59.407 50.000 0.00 0.00 0.00 3.74
480 532 1.336440 CCTTGTCATTGCACCGTCAAA 59.664 47.619 0.00 0.00 0.00 2.69
481 533 0.950836 CCTTGTCATTGCACCGTCAA 59.049 50.000 0.00 0.00 0.00 3.18
482 534 0.107643 TCCTTGTCATTGCACCGTCA 59.892 50.000 0.00 0.00 0.00 4.35
493 545 2.879233 GCCGTCCACCTCCTTGTCA 61.879 63.158 0.00 0.00 0.00 3.58
510 562 4.585955 TTCCACTACTCCAATCTATCGC 57.414 45.455 0.00 0.00 0.00 4.58
531 583 7.462571 AGGCGAAAACAACTTTAGGATATTT 57.537 32.000 0.00 0.00 0.00 1.40
541 593 4.450082 ACAGAAAAGGCGAAAACAACTT 57.550 36.364 0.00 0.00 0.00 2.66
554 606 7.307219 CGAGACACCCTAACTAAAACAGAAAAG 60.307 40.741 0.00 0.00 0.00 2.27
561 613 6.750963 CAGATACGAGACACCCTAACTAAAAC 59.249 42.308 0.00 0.00 0.00 2.43
567 619 2.361438 CCCAGATACGAGACACCCTAAC 59.639 54.545 0.00 0.00 0.00 2.34
588 663 4.020485 AGGAGAACAACATACAGGGTGTAC 60.020 45.833 0.00 0.00 35.42 2.90
590 665 2.979678 AGGAGAACAACATACAGGGTGT 59.020 45.455 0.00 0.00 0.00 4.16
591 666 3.261897 AGAGGAGAACAACATACAGGGTG 59.738 47.826 0.00 0.00 0.00 4.61
593 668 5.129485 ACATAGAGGAGAACAACATACAGGG 59.871 44.000 0.00 0.00 0.00 4.45
594 669 6.227298 ACATAGAGGAGAACAACATACAGG 57.773 41.667 0.00 0.00 0.00 4.00
673 751 1.891919 TATTCGCGCTTGCCATCCC 60.892 57.895 5.56 0.00 34.11 3.85
690 768 2.638855 ACACAAACTACCATTCGGGGTA 59.361 45.455 0.00 0.00 42.42 3.69
691 769 1.422402 ACACAAACTACCATTCGGGGT 59.578 47.619 0.00 0.00 45.10 4.95
715 793 2.103153 TTTGTAAAATGCCACCCCCA 57.897 45.000 0.00 0.00 0.00 4.96
739 817 7.432869 CCTCCAAATTAAACAAACTGTCATGA 58.567 34.615 0.00 0.00 0.00 3.07
772 850 3.940209 TGATGATGTCAGTTTTTGCCC 57.060 42.857 0.00 0.00 31.80 5.36
787 865 4.650131 AGCTGTCTGATCTTGATCTGATGA 59.350 41.667 18.43 10.58 32.49 2.92
789 867 4.897076 AGAGCTGTCTGATCTTGATCTGAT 59.103 41.667 18.43 7.08 38.41 2.90
866 944 4.334481 CCGTGGGACAAATGTATCTTTACC 59.666 45.833 0.00 0.00 44.16 2.85
872 950 1.021968 GGCCGTGGGACAAATGTATC 58.978 55.000 0.00 0.00 44.16 2.24
874 952 1.376166 CGGCCGTGGGACAAATGTA 60.376 57.895 19.50 0.00 44.16 2.29
909 988 1.069258 CCTAAATCGCCCCGAGTCC 59.931 63.158 0.00 0.00 39.91 3.85
929 1016 2.208431 GGTCAGCTCCGATTGATTCTG 58.792 52.381 0.00 0.00 0.00 3.02
934 1021 2.367202 GGGGGTCAGCTCCGATTGA 61.367 63.158 0.00 0.00 35.58 2.57
953 1040 1.553690 ATCCAGTCACGGTTGGGGAG 61.554 60.000 0.00 0.00 35.13 4.30
1055 1174 4.436998 CCTCAGACCGTGCGTCCC 62.437 72.222 0.00 0.00 43.08 4.46
1062 1181 1.654954 CGTCGGATTCCTCAGACCGT 61.655 60.000 0.00 0.00 41.78 4.83
1097 1216 2.744768 GCGCTGCAGTAGGTCTTGC 61.745 63.158 16.64 3.37 0.00 4.01
1098 1217 2.103042 GGCGCTGCAGTAGGTCTTG 61.103 63.158 16.64 0.00 0.00 3.02
1099 1218 2.266055 GGCGCTGCAGTAGGTCTT 59.734 61.111 16.64 0.00 0.00 3.01
1100 1219 4.135153 CGGCGCTGCAGTAGGTCT 62.135 66.667 16.64 0.00 0.00 3.85
1128 1247 1.078285 ACGAGACTCCTCCTCCGAC 60.078 63.158 0.00 0.00 36.04 4.79
1139 1258 3.432588 CACGGAGGCGACGAGACT 61.433 66.667 10.63 0.00 44.42 3.24
1140 1259 2.974489 TTCACGGAGGCGACGAGAC 61.974 63.158 10.63 0.00 31.07 3.36
1154 1273 3.486263 CCGCTGATTCGGGTTCAC 58.514 61.111 0.00 0.00 45.38 3.18
1206 1325 0.593128 CCCACCTTGACTTTGCTTCG 59.407 55.000 0.00 0.00 0.00 3.79
1273 1398 2.348888 GGAGAGGAGGCGAACGGAA 61.349 63.158 0.00 0.00 0.00 4.30
1318 1444 2.416432 GGAAGGAGGGGTCGTCGAG 61.416 68.421 0.00 0.00 0.00 4.04
1325 1451 0.398664 ATCGAATCGGAAGGAGGGGT 60.399 55.000 1.76 0.00 0.00 4.95
1373 1523 3.057734 GGCCTAGCATACGATACAACAC 58.942 50.000 0.00 0.00 0.00 3.32
1380 1534 4.090090 ACATCTTAGGCCTAGCATACGAT 58.910 43.478 13.36 6.74 34.96 3.73
1381 1535 3.497332 ACATCTTAGGCCTAGCATACGA 58.503 45.455 13.36 4.73 28.86 3.43
1382 1536 3.255888 TGACATCTTAGGCCTAGCATACG 59.744 47.826 13.36 3.71 0.00 3.06
1383 1537 4.561105 GTGACATCTTAGGCCTAGCATAC 58.439 47.826 13.36 5.43 0.00 2.39
1384 1538 3.255888 CGTGACATCTTAGGCCTAGCATA 59.744 47.826 13.36 0.00 0.00 3.14
1437 1591 3.345737 CTGAAGGCATTGCAGCATG 57.654 52.632 11.39 0.00 40.87 4.06
1553 1707 3.258872 TGCCAGCTTTCTATGCATTTGTT 59.741 39.130 3.54 0.00 0.00 2.83
1556 1710 2.827322 TGTGCCAGCTTTCTATGCATTT 59.173 40.909 3.54 0.00 33.62 2.32
1709 1867 5.070001 AGCAGTGCTTGTAAGAATAAACCA 58.930 37.500 13.14 0.00 33.89 3.67
1732 1890 5.309638 TGTAGTACAATGCAAGGTGCTTAA 58.690 37.500 14.89 4.07 45.31 1.85
1749 1907 6.666113 TCATGACAAACCACTAGGATGTAGTA 59.334 38.462 0.00 0.00 38.16 1.82
1750 1908 5.483937 TCATGACAAACCACTAGGATGTAGT 59.516 40.000 0.00 0.00 38.16 2.73
1751 1909 5.977635 TCATGACAAACCACTAGGATGTAG 58.022 41.667 0.00 0.00 38.16 2.74
1791 1949 7.782242 TGCGCAAAATCTGTTAAAAATGTAAG 58.218 30.769 8.16 0.00 0.00 2.34
1811 1971 9.060547 CAAATTTATTATAATTATCGCTGCGCA 57.939 29.630 18.65 10.98 0.00 6.09
1852 2012 8.993121 ACAATGACTGACTTCACTTAATTACTG 58.007 33.333 0.00 0.00 0.00 2.74
1878 2038 7.489574 AAAACAAAACAGAACAAAGAAGCAA 57.510 28.000 0.00 0.00 0.00 3.91
1917 2077 5.727434 ACAATCATGGAGAAAGAAATTGGC 58.273 37.500 0.00 0.00 0.00 4.52
1929 2089 3.697542 TGATCAGCCAAACAATCATGGAG 59.302 43.478 0.00 0.00 39.12 3.86
1964 2125 0.984230 CCTTACCAGGAGCAGGTTCA 59.016 55.000 0.00 0.00 44.19 3.18
2052 2213 2.033141 GGACAAGCAGCCAGAGCA 59.967 61.111 0.00 0.00 43.56 4.26
2180 2344 1.348036 GCAACAGAGAGGTAAGGGTGT 59.652 52.381 0.00 0.00 0.00 4.16
2205 2378 7.624360 TCTTTAAAGTACATAAGGTGCATGG 57.376 36.000 14.74 0.00 34.11 3.66
2214 2387 8.943594 ACCCAATGGTTCTTTAAAGTACATAA 57.056 30.769 21.84 10.55 44.75 1.90
2262 2437 2.095059 GTGAAATGCTGGGCACTAACAG 60.095 50.000 0.00 0.00 43.04 3.16
2265 2440 1.075374 AGGTGAAATGCTGGGCACTAA 59.925 47.619 0.00 0.00 43.04 2.24
2335 2520 5.983118 AGGCAACCTAAAGAAATTTCAAACG 59.017 36.000 19.99 5.97 28.47 3.60
2454 2640 4.988540 GGTCAAAACCAGAAAATAGCAACC 59.011 41.667 0.00 0.00 45.68 3.77
2516 2709 3.198417 TCTGGCAGAAGAATGAGCACATA 59.802 43.478 16.28 0.00 35.50 2.29
2616 2809 9.219603 ACACAGAAGCATGCGTATAATATTTAT 57.780 29.630 13.01 0.00 0.00 1.40
2623 2816 4.094294 GGAAACACAGAAGCATGCGTATAA 59.906 41.667 13.01 0.00 0.00 0.98
2649 2842 8.830580 CAGGTAAATACACAGAATACATTGGAG 58.169 37.037 0.00 0.00 0.00 3.86
2680 2873 7.944729 ATCTGTACTGTCTTATTGCCAAAAT 57.055 32.000 0.00 0.00 0.00 1.82
2791 2984 9.483489 TTCAGGTAATTAGTGTGAAGGTCTATA 57.517 33.333 0.00 0.00 0.00 1.31
2792 2985 7.973048 TCAGGTAATTAGTGTGAAGGTCTAT 57.027 36.000 0.00 0.00 0.00 1.98
2918 3119 3.925116 GCTGAGGCAAGTAAGGAGACTTC 60.925 52.174 0.00 0.00 43.80 3.01
3040 3241 1.813786 ACTTGAGAGGACGTAGCACTC 59.186 52.381 0.00 0.00 34.43 3.51
3051 3252 1.891811 TGAGACTGCAGACTTGAGAGG 59.108 52.381 23.35 0.00 0.00 3.69
3052 3253 3.872511 ATGAGACTGCAGACTTGAGAG 57.127 47.619 23.35 0.00 0.00 3.20
3291 3510 5.827267 TCCACACATGATATAACACCCAATG 59.173 40.000 0.00 0.00 0.00 2.82
3507 3762 2.050985 GCAAACACAGTCCGCTGC 60.051 61.111 0.00 0.00 46.30 5.25
3685 3940 3.862845 GGAGCAAAAACGCTTTTCAAAGA 59.137 39.130 3.35 0.00 44.01 2.52
3691 3946 4.820173 AGTAGTAGGAGCAAAAACGCTTTT 59.180 37.500 0.00 0.00 44.01 2.27
3700 3955 5.567430 TCAGTAGTCAGTAGTAGGAGCAAA 58.433 41.667 0.00 0.00 0.00 3.68
3701 3956 5.175388 TCAGTAGTCAGTAGTAGGAGCAA 57.825 43.478 0.00 0.00 0.00 3.91
3717 3972 0.175302 CAGGGCTCACTGCTCAGTAG 59.825 60.000 1.79 0.00 46.80 2.57
3718 3973 2.280835 CAGGGCTCACTGCTCAGTA 58.719 57.895 1.79 0.00 46.80 2.74
3719 3974 3.067091 CAGGGCTCACTGCTCAGT 58.933 61.111 0.00 0.00 46.80 3.41
3782 4045 6.004408 TCCGCCAACAAAATCTAACTAAAC 57.996 37.500 0.00 0.00 0.00 2.01
3799 4062 2.745308 ATGCCACATAGCTCCGCCA 61.745 57.895 0.00 0.00 0.00 5.69
3801 4064 2.901292 GCATGCCACATAGCTCCGC 61.901 63.158 6.36 0.00 0.00 5.54
3802 4065 2.256591 GGCATGCCACATAGCTCCG 61.257 63.158 32.08 0.00 35.81 4.63
3803 4066 0.466922 AAGGCATGCCACATAGCTCC 60.467 55.000 37.18 7.34 38.92 4.70
3804 4067 1.396653 AAAGGCATGCCACATAGCTC 58.603 50.000 37.18 8.13 38.92 4.09
3805 4068 1.753073 GAAAAGGCATGCCACATAGCT 59.247 47.619 37.18 13.31 38.92 3.32
3806 4069 1.534595 CGAAAAGGCATGCCACATAGC 60.535 52.381 37.18 19.50 38.92 2.97
3807 4070 2.016318 TCGAAAAGGCATGCCACATAG 58.984 47.619 37.18 24.03 38.92 2.23
3808 4071 2.121291 TCGAAAAGGCATGCCACATA 57.879 45.000 37.18 15.23 38.92 2.29
3809 4072 1.255882 TTCGAAAAGGCATGCCACAT 58.744 45.000 37.18 22.39 38.92 3.21
3810 4073 1.067706 CATTCGAAAAGGCATGCCACA 60.068 47.619 37.18 13.48 38.92 4.17
3841 4114 7.649306 GTCATTCGAAAAGGCATGCTATAAAAT 59.351 33.333 18.92 6.56 0.00 1.82
3844 4117 5.008613 GGTCATTCGAAAAGGCATGCTATAA 59.991 40.000 18.92 3.38 0.00 0.98
3847 4120 2.682856 GGTCATTCGAAAAGGCATGCTA 59.317 45.455 18.92 0.00 0.00 3.49
3848 4121 1.474077 GGTCATTCGAAAAGGCATGCT 59.526 47.619 18.92 0.00 0.00 3.79
3851 4124 4.526970 ACATAGGTCATTCGAAAAGGCAT 58.473 39.130 0.00 0.00 0.00 4.40
3890 4163 9.477484 CACTAGTAATTCGAAAAGGCATACTAT 57.523 33.333 0.00 0.00 0.00 2.12
3891 4164 7.924412 CCACTAGTAATTCGAAAAGGCATACTA 59.076 37.037 0.00 7.76 0.00 1.82
3892 4165 6.761714 CCACTAGTAATTCGAAAAGGCATACT 59.238 38.462 0.00 7.06 0.00 2.12
3893 4166 6.018180 CCCACTAGTAATTCGAAAAGGCATAC 60.018 42.308 0.00 0.00 0.00 2.39
3894 4167 6.053005 CCCACTAGTAATTCGAAAAGGCATA 58.947 40.000 0.00 0.00 0.00 3.14
3895 4168 4.881850 CCCACTAGTAATTCGAAAAGGCAT 59.118 41.667 0.00 0.00 0.00 4.40
3896 4169 4.258543 CCCACTAGTAATTCGAAAAGGCA 58.741 43.478 0.00 0.00 0.00 4.75
3897 4170 3.064958 GCCCACTAGTAATTCGAAAAGGC 59.935 47.826 0.00 0.70 0.00 4.35
3898 4171 3.308866 CGCCCACTAGTAATTCGAAAAGG 59.691 47.826 0.00 0.00 0.00 3.11
3899 4172 3.930848 ACGCCCACTAGTAATTCGAAAAG 59.069 43.478 0.00 0.00 0.00 2.27
3900 4173 3.680937 CACGCCCACTAGTAATTCGAAAA 59.319 43.478 0.00 0.00 0.00 2.29
3901 4174 3.255725 CACGCCCACTAGTAATTCGAAA 58.744 45.455 0.00 0.00 0.00 3.46
3902 4175 2.231964 ACACGCCCACTAGTAATTCGAA 59.768 45.455 0.00 0.00 0.00 3.71
3903 4176 1.820519 ACACGCCCACTAGTAATTCGA 59.179 47.619 0.00 0.00 0.00 3.71
3904 4177 2.288961 ACACGCCCACTAGTAATTCG 57.711 50.000 0.00 0.00 0.00 3.34
3905 4178 7.775397 TTATTTACACGCCCACTAGTAATTC 57.225 36.000 0.00 0.00 0.00 2.17
3906 4179 7.825761 AGTTTATTTACACGCCCACTAGTAATT 59.174 33.333 0.00 0.00 0.00 1.40
3907 4180 7.333323 AGTTTATTTACACGCCCACTAGTAAT 58.667 34.615 0.00 0.00 0.00 1.89
3908 4181 6.700352 AGTTTATTTACACGCCCACTAGTAA 58.300 36.000 0.00 0.00 0.00 2.24
3909 4182 6.284891 AGTTTATTTACACGCCCACTAGTA 57.715 37.500 0.00 0.00 0.00 1.82
3910 4183 5.156608 AGTTTATTTACACGCCCACTAGT 57.843 39.130 0.00 0.00 0.00 2.57
3911 4184 5.410439 ACAAGTTTATTTACACGCCCACTAG 59.590 40.000 0.00 0.00 0.00 2.57
3912 4185 5.307204 ACAAGTTTATTTACACGCCCACTA 58.693 37.500 0.00 0.00 0.00 2.74
3913 4186 4.139038 ACAAGTTTATTTACACGCCCACT 58.861 39.130 0.00 0.00 0.00 4.00
3914 4187 4.492791 ACAAGTTTATTTACACGCCCAC 57.507 40.909 0.00 0.00 0.00 4.61
3915 4188 7.607223 ACTTATACAAGTTTATTTACACGCCCA 59.393 33.333 0.00 0.00 42.51 5.36
3916 4189 7.977904 ACTTATACAAGTTTATTTACACGCCC 58.022 34.615 0.00 0.00 42.51 6.13
3949 4225 8.506437 TGAAGCACAAATATTAGAGAAACACAG 58.494 33.333 0.00 0.00 0.00 3.66
3953 4229 8.507249 ACACTGAAGCACAAATATTAGAGAAAC 58.493 33.333 0.00 0.00 0.00 2.78
3990 4268 1.367471 CAGACCTGACGGTGAAGCA 59.633 57.895 0.00 0.00 45.73 3.91
3991 4269 2.029844 GCAGACCTGACGGTGAAGC 61.030 63.158 0.47 0.00 45.73 3.86
3992 4270 0.888619 TAGCAGACCTGACGGTGAAG 59.111 55.000 0.47 0.00 45.73 3.02
3993 4271 1.476891 GATAGCAGACCTGACGGTGAA 59.523 52.381 0.47 0.00 45.73 3.18
3994 4272 1.103803 GATAGCAGACCTGACGGTGA 58.896 55.000 0.47 0.00 45.73 4.02
3995 4273 1.107114 AGATAGCAGACCTGACGGTG 58.893 55.000 0.47 0.00 45.73 4.94
3998 4276 2.685388 TCAGAAGATAGCAGACCTGACG 59.315 50.000 0.47 0.00 0.00 4.35
4000 4278 4.206375 CTCTCAGAAGATAGCAGACCTGA 58.794 47.826 0.47 0.00 0.00 3.86
4001 4279 3.953612 ACTCTCAGAAGATAGCAGACCTG 59.046 47.826 0.00 0.00 0.00 4.00
4005 4295 3.951037 GACCACTCTCAGAAGATAGCAGA 59.049 47.826 0.00 0.00 0.00 4.26
4136 4443 7.894753 TTTTATTGTCATCCCAATATCAGCA 57.105 32.000 0.00 0.00 37.20 4.41
4347 4665 9.525409 GGAGAGATAATCCACAAAAATCAAATG 57.475 33.333 0.00 0.00 36.79 2.32
4486 4804 5.068855 TGTTGTTTTCTCATCAAATCTGCCA 59.931 36.000 0.00 0.00 0.00 4.92
4518 4836 4.020928 TGCCTTTAGGTGAGATGTCGTTTA 60.021 41.667 0.00 0.00 37.57 2.01
4523 4841 4.141711 TGGTATGCCTTTAGGTGAGATGTC 60.142 45.833 0.16 0.00 37.57 3.06
4532 4850 3.016736 CACAGGTTGGTATGCCTTTAGG 58.983 50.000 0.16 0.00 38.53 2.69
4554 4872 6.465084 ACAACTGTCCTTCTAACCATCTAAC 58.535 40.000 0.00 0.00 0.00 2.34
4562 4893 3.864003 GGCGATACAACTGTCCTTCTAAC 59.136 47.826 0.00 0.00 0.00 2.34
4567 4898 1.676014 GCTGGCGATACAACTGTCCTT 60.676 52.381 0.00 0.00 0.00 3.36
4576 4907 1.048160 TCTGATGGGCTGGCGATACA 61.048 55.000 0.00 0.00 0.00 2.29
4579 4910 1.630126 AACTCTGATGGGCTGGCGAT 61.630 55.000 0.00 0.00 0.00 4.58
4582 4913 0.322816 TTGAACTCTGATGGGCTGGC 60.323 55.000 0.00 0.00 0.00 4.85
4605 4936 3.879998 TGAGCACCAGTGTCAAGTTTAA 58.120 40.909 0.00 0.00 0.00 1.52
4608 4939 2.645838 ATGAGCACCAGTGTCAAGTT 57.354 45.000 0.00 0.00 0.00 2.66
4612 4943 4.009675 GGAAAATATGAGCACCAGTGTCA 58.990 43.478 0.00 3.08 0.00 3.58
4619 4950 7.992754 ATGAATCTAGGAAAATATGAGCACC 57.007 36.000 0.00 0.00 0.00 5.01
4641 4972 6.237942 CGTACATAGCTGGAAGACTTGAAATG 60.238 42.308 0.00 0.00 34.07 2.32
4642 4973 5.812642 CGTACATAGCTGGAAGACTTGAAAT 59.187 40.000 0.00 0.00 34.07 2.17
4644 4975 4.219944 ACGTACATAGCTGGAAGACTTGAA 59.780 41.667 0.00 0.00 34.07 2.69
4645 4976 3.762288 ACGTACATAGCTGGAAGACTTGA 59.238 43.478 0.00 0.00 34.07 3.02
4646 4977 4.111375 ACGTACATAGCTGGAAGACTTG 57.889 45.455 0.00 0.00 34.07 3.16
4648 4979 4.803098 AAACGTACATAGCTGGAAGACT 57.197 40.909 0.00 0.00 34.07 3.24
4650 4981 4.098960 CCCTAAACGTACATAGCTGGAAGA 59.901 45.833 0.00 0.00 34.07 2.87
4656 4987 2.963782 CCTCCCCTAAACGTACATAGCT 59.036 50.000 0.00 0.00 0.00 3.32
4659 4990 2.247111 TCCCCTCCCCTAAACGTACATA 59.753 50.000 0.00 0.00 0.00 2.29
4664 4995 0.253020 ACATCCCCTCCCCTAAACGT 60.253 55.000 0.00 0.00 0.00 3.99
4669 5000 1.074775 CGGAACATCCCCTCCCCTA 60.075 63.158 0.00 0.00 31.13 3.53
4673 5004 1.137697 ATTACCGGAACATCCCCTCC 58.862 55.000 9.46 0.00 31.13 4.30
4678 5009 2.228138 TACGCATTACCGGAACATCC 57.772 50.000 9.46 0.00 0.00 3.51
4681 5012 2.272678 CACATACGCATTACCGGAACA 58.727 47.619 9.46 0.00 0.00 3.18
4687 5018 0.580104 GTCGCCACATACGCATTACC 59.420 55.000 0.00 0.00 0.00 2.85
4688 5019 1.567504 AGTCGCCACATACGCATTAC 58.432 50.000 0.00 0.00 0.00 1.89
4689 5020 2.303163 AAGTCGCCACATACGCATTA 57.697 45.000 0.00 0.00 0.00 1.90
4690 5021 1.130373 CAAAGTCGCCACATACGCATT 59.870 47.619 0.00 0.00 0.00 3.56
4691 5022 0.726827 CAAAGTCGCCACATACGCAT 59.273 50.000 0.00 0.00 0.00 4.73
4692 5023 0.601576 ACAAAGTCGCCACATACGCA 60.602 50.000 0.00 0.00 0.00 5.24
4693 5024 0.094730 GACAAAGTCGCCACATACGC 59.905 55.000 0.00 0.00 0.00 4.42
4694 5025 1.424403 TGACAAAGTCGCCACATACG 58.576 50.000 0.00 0.00 34.95 3.06
4695 5026 4.003519 GATTGACAAAGTCGCCACATAC 57.996 45.455 0.00 0.00 34.95 2.39


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.