Multiple sequence alignment - TraesCS2B01G472700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G472700 chr2B 100.000 4454 0 0 1 4454 669348784 669344331 0.000000e+00 8226.0
1 TraesCS2B01G472700 chr2B 83.884 968 134 13 2924 3890 669221618 669222564 0.000000e+00 904.0
2 TraesCS2B01G472700 chr2B 86.546 773 75 12 906 1663 669220851 669221609 0.000000e+00 824.0
3 TraesCS2B01G472700 chr2B 89.965 289 23 2 1 288 602892911 602893194 7.040000e-98 368.0
4 TraesCS2B01G472700 chr2B 92.576 229 17 0 1 229 162387949 162388177 3.320000e-86 329.0
5 TraesCS2B01G472700 chr2B 81.115 323 51 8 13 333 602893093 602893407 2.660000e-62 250.0
6 TraesCS2B01G472700 chr2B 86.076 79 6 1 499 577 508006507 508006434 3.690000e-11 80.5
7 TraesCS2B01G472700 chr2D 95.931 3834 108 27 635 4454 560601770 560605569 0.000000e+00 6172.0
8 TraesCS2B01G472700 chr2D 86.310 2856 327 30 912 3762 560781537 560778741 0.000000e+00 3049.0
9 TraesCS2B01G472700 chr2D 88.851 296 13 8 638 913 560856163 560855868 3.300000e-91 346.0
10 TraesCS2B01G472700 chr2D 83.568 213 28 6 4098 4306 411531853 411531644 4.550000e-45 193.0
11 TraesCS2B01G472700 chr2D 93.443 122 7 1 377 498 560601502 560601622 3.540000e-41 180.0
12 TraesCS2B01G472700 chr2D 96.923 65 2 0 570 634 560601668 560601732 4.710000e-20 110.0
13 TraesCS2B01G472700 chr2A 97.217 3054 80 3 838 3886 700363852 700366905 0.000000e+00 5164.0
14 TraesCS2B01G472700 chr2A 82.633 2712 399 46 907 3575 700372621 700375303 0.000000e+00 2333.0
15 TraesCS2B01G472700 chr2A 92.481 399 19 5 4058 4454 700366903 700367292 1.080000e-155 560.0
16 TraesCS2B01G472700 chr2A 84.388 237 30 5 4093 4324 36834306 36834072 4.480000e-55 226.0
17 TraesCS2B01G472700 chr2A 84.545 220 25 6 4093 4306 141758873 141759089 4.510000e-50 209.0
18 TraesCS2B01G472700 chr6B 93.450 229 14 1 1 229 444364162 444363935 5.520000e-89 339.0
19 TraesCS2B01G472700 chr6B 86.957 138 9 8 198 333 444363551 444363421 3.590000e-31 147.0
20 TraesCS2B01G472700 chrUn 89.811 265 19 4 1 265 129914341 129914085 2.570000e-87 333.0
21 TraesCS2B01G472700 chrUn 85.882 85 4 3 499 583 218382201 218382125 2.850000e-12 84.2
22 TraesCS2B01G472700 chrUn 85.882 85 4 3 499 583 218399749 218399673 2.850000e-12 84.2
23 TraesCS2B01G472700 chr6D 88.259 247 24 1 4093 4334 468951851 468952097 1.570000e-74 291.0
24 TraesCS2B01G472700 chr6A 85.714 266 25 6 1 265 463800764 463800511 7.340000e-68 268.0
25 TraesCS2B01G472700 chr6A 87.179 78 2 3 499 576 607965049 607965118 1.030000e-11 82.4
26 TraesCS2B01G472700 chr6A 95.000 40 2 0 300 339 568170735 568170696 3.720000e-06 63.9
27 TraesCS2B01G472700 chr3A 85.062 241 26 5 4093 4331 345223246 345223478 2.070000e-58 237.0
28 TraesCS2B01G472700 chr3B 83.806 247 28 5 4094 4331 237364678 237364435 1.610000e-54 224.0
29 TraesCS2B01G472700 chr3B 95.455 44 1 1 290 333 409964543 409964501 7.990000e-08 69.4
30 TraesCS2B01G472700 chr4D 83.200 250 27 12 4093 4331 156424689 156424934 9.700000e-52 215.0
31 TraesCS2B01G472700 chr5A 83.550 231 26 7 4105 4326 513177486 513177259 5.840000e-49 206.0
32 TraesCS2B01G472700 chr5D 90.566 106 10 0 1 106 383003984 383003879 1.670000e-29 141.0
33 TraesCS2B01G472700 chr5D 90.196 51 3 1 291 339 428342572 428342522 1.030000e-06 65.8
34 TraesCS2B01G472700 chr5D 92.683 41 2 1 294 333 108700011 108700051 1.730000e-04 58.4
35 TraesCS2B01G472700 chr1D 91.176 68 1 1 498 565 148604052 148603990 2.210000e-13 87.9
36 TraesCS2B01G472700 chr1D 87.179 78 2 3 499 576 276691260 276691329 1.030000e-11 82.4
37 TraesCS2B01G472700 chr1A 91.045 67 1 1 499 565 517377067 517377128 7.940000e-13 86.1
38 TraesCS2B01G472700 chr1A 92.000 50 3 1 291 339 321560255 321560206 7.990000e-08 69.4
39 TraesCS2B01G472700 chr1A 90.196 51 3 2 290 339 477510755 477510804 1.030000e-06 65.8
40 TraesCS2B01G472700 chr7D 85.542 83 3 5 499 581 463580931 463580858 1.330000e-10 78.7
41 TraesCS2B01G472700 chr7D 85.542 83 3 4 499 581 607677671 607677598 1.330000e-10 78.7
42 TraesCS2B01G472700 chr1B 93.750 48 3 0 292 339 97385799 97385846 6.180000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G472700 chr2B 669344331 669348784 4453 True 8226 8226 100.000000 1 4454 1 chr2B.!!$R2 4453
1 TraesCS2B01G472700 chr2B 669220851 669222564 1713 False 864 904 85.215000 906 3890 2 chr2B.!!$F3 2984
2 TraesCS2B01G472700 chr2D 560778741 560781537 2796 True 3049 3049 86.310000 912 3762 1 chr2D.!!$R2 2850
3 TraesCS2B01G472700 chr2D 560601502 560605569 4067 False 2154 6172 95.432333 377 4454 3 chr2D.!!$F1 4077
4 TraesCS2B01G472700 chr2A 700363852 700367292 3440 False 2862 5164 94.849000 838 4454 2 chr2A.!!$F3 3616
5 TraesCS2B01G472700 chr2A 700372621 700375303 2682 False 2333 2333 82.633000 907 3575 1 chr2A.!!$F2 2668
6 TraesCS2B01G472700 chr6B 444363421 444364162 741 True 243 339 90.203500 1 333 2 chr6B.!!$R1 332

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
577 578 0.107459 ACGGAGGAGGGAGTACGTAC 60.107 60.0 18.1 18.1 32.3 3.67 F
744 788 0.110486 TGCCTGGTCCCTGAACTTTC 59.890 55.0 0.0 0.0 0.0 2.62 F
2515 2614 0.038343 CACGGTGGGAAATTGGCTTG 60.038 55.0 0.0 0.0 0.0 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2497 2596 0.178975 TCAAGCCAATTTCCCACCGT 60.179 50.0 0.00 0.00 0.00 4.83 R
2695 2794 1.058057 GAAAATGCGTGACGGCGTTC 61.058 55.0 16.19 10.08 41.08 3.95 R
3637 4182 2.496070 GGACCTAATTTGTTCCAAGCCC 59.504 50.0 0.00 0.00 0.00 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.586235 ATATGCTGGTGCGGGGCC 62.586 66.667 0.00 0.00 43.34 5.80
35 36 1.741770 GCCACGGCTAGTCACAAGG 60.742 63.158 0.00 0.00 38.26 3.61
51 52 4.265056 GGGTGGTGGGAAGCGTGT 62.265 66.667 0.00 0.00 0.00 4.49
107 108 2.843545 GGTTGGTTGCTGGGGAGA 59.156 61.111 0.00 0.00 0.00 3.71
108 109 1.384191 GGTTGGTTGCTGGGGAGAT 59.616 57.895 0.00 0.00 0.00 2.75
109 110 0.967380 GGTTGGTTGCTGGGGAGATG 60.967 60.000 0.00 0.00 0.00 2.90
110 111 0.967380 GTTGGTTGCTGGGGAGATGG 60.967 60.000 0.00 0.00 0.00 3.51
111 112 2.153898 TTGGTTGCTGGGGAGATGGG 62.154 60.000 0.00 0.00 0.00 4.00
112 113 2.308722 GGTTGCTGGGGAGATGGGA 61.309 63.158 0.00 0.00 0.00 4.37
113 114 1.225704 GTTGCTGGGGAGATGGGAG 59.774 63.158 0.00 0.00 0.00 4.30
114 115 2.002977 TTGCTGGGGAGATGGGAGG 61.003 63.158 0.00 0.00 0.00 4.30
115 116 3.883549 GCTGGGGAGATGGGAGGC 61.884 72.222 0.00 0.00 0.00 4.70
116 117 3.554342 CTGGGGAGATGGGAGGCG 61.554 72.222 0.00 0.00 0.00 5.52
133 134 4.729918 GGGGCAGTGGCTGGTCTG 62.730 72.222 17.16 0.00 40.87 3.51
134 135 3.958860 GGGCAGTGGCTGGTCTGT 61.959 66.667 17.16 0.00 40.87 3.41
135 136 2.359230 GGCAGTGGCTGGTCTGTC 60.359 66.667 9.90 0.00 40.87 3.51
136 137 2.740055 GCAGTGGCTGGTCTGTCG 60.740 66.667 0.00 0.00 36.96 4.35
137 138 2.047844 CAGTGGCTGGTCTGTCGG 60.048 66.667 0.00 0.00 0.00 4.79
138 139 2.203640 AGTGGCTGGTCTGTCGGA 60.204 61.111 0.00 0.00 0.00 4.55
139 140 1.837051 AGTGGCTGGTCTGTCGGAA 60.837 57.895 0.00 0.00 0.00 4.30
140 141 1.374758 GTGGCTGGTCTGTCGGAAG 60.375 63.158 0.00 0.00 0.00 3.46
141 142 2.266055 GGCTGGTCTGTCGGAAGG 59.734 66.667 0.00 0.00 0.00 3.46
142 143 2.584391 GGCTGGTCTGTCGGAAGGT 61.584 63.158 0.00 0.00 0.00 3.50
143 144 1.374758 GCTGGTCTGTCGGAAGGTG 60.375 63.158 0.00 0.00 0.00 4.00
144 145 1.293498 CTGGTCTGTCGGAAGGTGG 59.707 63.158 0.00 0.00 0.00 4.61
145 146 2.172483 CTGGTCTGTCGGAAGGTGGG 62.172 65.000 0.00 0.00 0.00 4.61
146 147 1.911766 GGTCTGTCGGAAGGTGGGA 60.912 63.158 0.00 0.00 0.00 4.37
147 148 1.592223 GTCTGTCGGAAGGTGGGAG 59.408 63.158 0.00 0.00 0.00 4.30
148 149 1.609501 TCTGTCGGAAGGTGGGAGG 60.610 63.158 0.00 0.00 0.00 4.30
149 150 3.316573 CTGTCGGAAGGTGGGAGGC 62.317 68.421 0.00 0.00 0.00 4.70
150 151 4.452733 GTCGGAAGGTGGGAGGCG 62.453 72.222 0.00 0.00 0.00 5.52
182 183 4.101448 CGCCAGGAAGGTGGGAGG 62.101 72.222 0.00 0.00 44.45 4.30
183 184 4.432741 GCCAGGAAGGTGGGAGGC 62.433 72.222 0.00 0.00 40.61 4.70
184 185 4.101448 CCAGGAAGGTGGGAGGCG 62.101 72.222 0.00 0.00 33.46 5.52
185 186 4.101448 CAGGAAGGTGGGAGGCGG 62.101 72.222 0.00 0.00 0.00 6.13
204 205 4.314440 GCAGTGGCTGGTCACCGA 62.314 66.667 1.46 0.00 38.34 4.69
205 206 2.047844 CAGTGGCTGGTCACCGAG 60.048 66.667 1.46 0.00 38.34 4.63
206 207 3.314331 AGTGGCTGGTCACCGAGG 61.314 66.667 1.46 0.00 38.34 4.63
207 208 3.311110 GTGGCTGGTCACCGAGGA 61.311 66.667 0.00 0.00 0.00 3.71
208 209 2.997315 TGGCTGGTCACCGAGGAG 60.997 66.667 0.00 0.00 0.00 3.69
292 293 4.227134 CGGGAGGTGGGAGCATCG 62.227 72.222 0.00 0.00 34.37 3.84
301 302 2.031163 GGAGCATCGCGCCCTTAT 59.969 61.111 0.00 0.00 42.60 1.73
302 303 1.292223 GGAGCATCGCGCCCTTATA 59.708 57.895 0.00 0.00 42.60 0.98
303 304 0.320421 GGAGCATCGCGCCCTTATAA 60.320 55.000 0.00 0.00 42.60 0.98
304 305 1.071605 GAGCATCGCGCCCTTATAAG 58.928 55.000 0.00 5.43 44.04 1.73
305 306 0.320771 AGCATCGCGCCCTTATAAGG 60.321 55.000 22.75 22.75 46.06 2.69
306 307 1.912371 GCATCGCGCCCTTATAAGGC 61.912 60.000 24.05 17.90 45.10 4.35
313 314 2.850016 CCCTTATAAGGCGAGGGGT 58.150 57.895 24.05 0.00 45.27 4.95
314 315 2.019807 CCCTTATAAGGCGAGGGGTA 57.980 55.000 24.05 0.00 45.27 3.69
315 316 2.332117 CCCTTATAAGGCGAGGGGTAA 58.668 52.381 24.05 0.00 45.27 2.85
316 317 2.038164 CCCTTATAAGGCGAGGGGTAAC 59.962 54.545 24.05 0.00 45.27 2.50
317 318 2.701951 CCTTATAAGGCGAGGGGTAACA 59.298 50.000 18.52 0.00 39.76 2.41
318 319 3.244112 CCTTATAAGGCGAGGGGTAACAG 60.244 52.174 18.52 0.00 39.76 3.16
319 320 2.170012 ATAAGGCGAGGGGTAACAGA 57.830 50.000 0.00 0.00 39.74 3.41
320 321 1.941377 TAAGGCGAGGGGTAACAGAA 58.059 50.000 0.00 0.00 39.74 3.02
321 322 1.286248 AAGGCGAGGGGTAACAGAAT 58.714 50.000 0.00 0.00 39.74 2.40
322 323 2.170012 AGGCGAGGGGTAACAGAATA 57.830 50.000 0.00 0.00 39.74 1.75
323 324 2.474112 AGGCGAGGGGTAACAGAATAA 58.526 47.619 0.00 0.00 39.74 1.40
324 325 3.046374 AGGCGAGGGGTAACAGAATAAT 58.954 45.455 0.00 0.00 39.74 1.28
325 326 4.228824 AGGCGAGGGGTAACAGAATAATA 58.771 43.478 0.00 0.00 39.74 0.98
326 327 4.844655 AGGCGAGGGGTAACAGAATAATAT 59.155 41.667 0.00 0.00 39.74 1.28
327 328 5.309806 AGGCGAGGGGTAACAGAATAATATT 59.690 40.000 0.00 0.00 39.74 1.28
328 329 5.642491 GGCGAGGGGTAACAGAATAATATTC 59.358 44.000 4.89 4.89 39.74 1.75
329 330 6.465084 GCGAGGGGTAACAGAATAATATTCT 58.535 40.000 9.56 9.56 39.74 2.40
432 433 1.152756 GAACAGTGGCACCCCAAGT 60.153 57.895 15.27 2.73 44.33 3.16
449 450 1.745232 AGTCTGCGACTCTAGGTCTG 58.255 55.000 5.54 5.05 38.71 3.51
498 499 2.115911 CAGCGCCTCGAGGTAGACT 61.116 63.158 31.43 20.00 37.57 3.24
499 500 0.814410 CAGCGCCTCGAGGTAGACTA 60.814 60.000 31.43 0.00 37.57 2.59
500 501 0.108963 AGCGCCTCGAGGTAGACTAT 59.891 55.000 31.43 9.19 37.57 2.12
501 502 0.518195 GCGCCTCGAGGTAGACTATC 59.482 60.000 31.43 11.99 37.57 2.08
502 503 1.878948 GCGCCTCGAGGTAGACTATCT 60.879 57.143 31.43 0.00 37.57 1.98
503 504 2.612471 GCGCCTCGAGGTAGACTATCTA 60.612 54.545 31.43 0.00 37.57 1.98
505 506 3.056678 CGCCTCGAGGTAGACTATCTAGA 60.057 52.174 31.43 5.56 37.57 2.43
506 507 4.561123 CGCCTCGAGGTAGACTATCTAGAA 60.561 50.000 31.43 0.00 37.57 2.10
507 508 4.692155 GCCTCGAGGTAGACTATCTAGAAC 59.308 50.000 31.43 6.09 37.57 3.01
508 509 5.511888 GCCTCGAGGTAGACTATCTAGAACT 60.512 48.000 31.43 0.00 37.57 3.01
509 510 6.295236 GCCTCGAGGTAGACTATCTAGAACTA 60.295 46.154 31.43 0.00 37.57 2.24
511 512 8.149647 CCTCGAGGTAGACTATCTAGAACTAAA 58.850 40.741 24.04 0.00 28.01 1.85
512 513 9.545105 CTCGAGGTAGACTATCTAGAACTAAAA 57.455 37.037 3.91 0.00 28.01 1.52
537 538 9.574458 AATACATCTAGATACATTCATACGTGC 57.426 33.333 4.54 0.00 0.00 5.34
538 539 6.981722 ACATCTAGATACATTCATACGTGCA 58.018 36.000 4.54 0.00 0.00 4.57
539 540 7.433680 ACATCTAGATACATTCATACGTGCAA 58.566 34.615 4.54 0.00 0.00 4.08
541 542 6.801575 TCTAGATACATTCATACGTGCAACA 58.198 36.000 0.00 0.00 35.74 3.33
543 544 6.735678 AGATACATTCATACGTGCAACAAA 57.264 33.333 0.00 0.00 35.74 2.83
544 545 7.139896 AGATACATTCATACGTGCAACAAAA 57.860 32.000 0.00 0.00 35.74 2.44
545 546 7.021196 AGATACATTCATACGTGCAACAAAAC 58.979 34.615 0.00 0.00 35.74 2.43
546 547 4.926244 ACATTCATACGTGCAACAAAACA 58.074 34.783 0.00 0.00 35.74 2.83
547 548 5.344066 ACATTCATACGTGCAACAAAACAA 58.656 33.333 0.00 0.00 35.74 2.83
548 549 5.458452 ACATTCATACGTGCAACAAAACAAG 59.542 36.000 0.00 0.00 35.74 3.16
549 550 4.624336 TCATACGTGCAACAAAACAAGT 57.376 36.364 0.00 0.00 35.74 3.16
550 551 5.736486 TCATACGTGCAACAAAACAAGTA 57.264 34.783 0.00 0.00 35.74 2.24
551 552 6.120378 TCATACGTGCAACAAAACAAGTAA 57.880 33.333 0.00 0.00 35.06 2.24
552 553 6.730175 TCATACGTGCAACAAAACAAGTAAT 58.270 32.000 0.00 0.00 35.06 1.89
553 554 7.197017 TCATACGTGCAACAAAACAAGTAATT 58.803 30.769 0.00 0.00 35.06 1.40
554 555 5.942325 ACGTGCAACAAAACAAGTAATTC 57.058 34.783 0.00 0.00 35.74 2.17
555 556 4.497608 ACGTGCAACAAAACAAGTAATTCG 59.502 37.500 0.00 0.00 35.74 3.34
556 557 4.085822 CGTGCAACAAAACAAGTAATTCGG 60.086 41.667 0.00 0.00 35.74 4.30
557 558 5.038033 GTGCAACAAAACAAGTAATTCGGA 58.962 37.500 0.00 0.00 36.32 4.55
558 559 5.517054 GTGCAACAAAACAAGTAATTCGGAA 59.483 36.000 0.00 0.00 36.32 4.30
559 560 5.517054 TGCAACAAAACAAGTAATTCGGAAC 59.483 36.000 0.00 0.00 0.00 3.62
577 578 0.107459 ACGGAGGAGGGAGTACGTAC 60.107 60.000 18.10 18.10 32.30 3.67
606 607 4.088634 TGCCATCTTGTTTTTATCAGCCT 58.911 39.130 0.00 0.00 0.00 4.58
664 702 0.975887 GAGGCCTTGGCATGGAAAAA 59.024 50.000 22.50 0.00 0.00 1.94
673 711 0.316841 GCATGGAAAAAGGCAACGGA 59.683 50.000 0.00 0.00 46.39 4.69
736 780 4.021925 GAGCGTTGCCTGGTCCCT 62.022 66.667 0.00 0.00 0.00 4.20
737 781 4.335647 AGCGTTGCCTGGTCCCTG 62.336 66.667 0.00 0.00 0.00 4.45
738 782 4.329545 GCGTTGCCTGGTCCCTGA 62.330 66.667 0.00 0.00 0.00 3.86
739 783 2.429930 CGTTGCCTGGTCCCTGAA 59.570 61.111 0.00 0.00 0.00 3.02
740 784 1.966451 CGTTGCCTGGTCCCTGAAC 60.966 63.158 0.00 0.00 0.00 3.18
741 785 1.456287 GTTGCCTGGTCCCTGAACT 59.544 57.895 0.00 0.00 0.00 3.01
742 786 0.178990 GTTGCCTGGTCCCTGAACTT 60.179 55.000 0.00 0.00 0.00 2.66
743 787 0.555769 TTGCCTGGTCCCTGAACTTT 59.444 50.000 0.00 0.00 0.00 2.66
744 788 0.110486 TGCCTGGTCCCTGAACTTTC 59.890 55.000 0.00 0.00 0.00 2.62
745 789 0.402121 GCCTGGTCCCTGAACTTTCT 59.598 55.000 0.00 0.00 0.00 2.52
746 790 1.611936 GCCTGGTCCCTGAACTTTCTC 60.612 57.143 0.00 0.00 0.00 2.87
747 791 1.338200 CCTGGTCCCTGAACTTTCTCG 60.338 57.143 0.00 0.00 0.00 4.04
748 792 1.618837 CTGGTCCCTGAACTTTCTCGA 59.381 52.381 0.00 0.00 0.00 4.04
749 793 2.234908 CTGGTCCCTGAACTTTCTCGAT 59.765 50.000 0.00 0.00 0.00 3.59
750 794 3.437213 TGGTCCCTGAACTTTCTCGATA 58.563 45.455 0.00 0.00 0.00 2.92
751 795 3.194968 TGGTCCCTGAACTTTCTCGATAC 59.805 47.826 0.00 0.00 0.00 2.24
752 796 3.194968 GGTCCCTGAACTTTCTCGATACA 59.805 47.826 0.00 0.00 0.00 2.29
753 797 4.425520 GTCCCTGAACTTTCTCGATACAG 58.574 47.826 0.00 0.00 0.00 2.74
754 798 4.158025 GTCCCTGAACTTTCTCGATACAGA 59.842 45.833 0.00 0.00 0.00 3.41
755 799 4.956700 TCCCTGAACTTTCTCGATACAGAT 59.043 41.667 0.00 0.00 0.00 2.90
756 800 6.039493 GTCCCTGAACTTTCTCGATACAGATA 59.961 42.308 0.00 0.00 0.00 1.98
757 801 6.039493 TCCCTGAACTTTCTCGATACAGATAC 59.961 42.308 0.00 0.00 0.00 2.24
765 809 4.392047 TCTCGATACAGATACCGGCTTTA 58.608 43.478 0.00 0.00 0.00 1.85
779 823 3.139077 CGGCTTTATTCGCCTTCCTTAT 58.861 45.455 0.00 0.00 45.37 1.73
810 854 7.184067 AGACTTCCAAGTTATAATCGGAACT 57.816 36.000 8.40 4.53 39.88 3.01
922 977 0.387878 CGATCGCATCAGACCTAGCC 60.388 60.000 0.26 0.00 0.00 3.93
1130 1209 2.125673 CATCCTCCGGTTTCGCGT 60.126 61.111 5.77 0.00 34.56 6.01
1239 1318 1.266786 ACAAGTTCGTCGTCTTCGCG 61.267 55.000 0.00 0.00 37.70 5.87
1621 1703 0.951040 CAACCAGGACGTTCAGCTCC 60.951 60.000 0.00 0.00 0.00 4.70
1635 1717 0.329596 AGCTCCTGGGGTTCAACATC 59.670 55.000 0.00 0.00 0.00 3.06
1655 1749 4.855298 TCCTAAAATCCGTCTTGGGAAT 57.145 40.909 0.00 0.00 40.09 3.01
1773 1867 1.541588 GCCATTCTTTGCTTCTCCGTT 59.458 47.619 0.00 0.00 0.00 4.44
2287 2385 0.334676 CCAGGTTGAGGGGGCAAATA 59.665 55.000 0.00 0.00 0.00 1.40
2497 2596 4.295051 GCGTGCTTTCTTTGAATTTACCA 58.705 39.130 0.00 0.00 0.00 3.25
2515 2614 0.038343 CACGGTGGGAAATTGGCTTG 60.038 55.000 0.00 0.00 0.00 4.01
2610 2709 4.460263 TCAACTTGATAAGCACCAACACT 58.540 39.130 0.00 0.00 0.00 3.55
2695 2794 1.300971 CTTCACACCGGCTGGACATG 61.301 60.000 21.41 13.11 39.21 3.21
2781 2880 0.467474 ATGTGGCCGTCGAGATAGGA 60.467 55.000 0.00 0.00 0.00 2.94
2971 3070 0.796312 CTCCACCCGTGAATTCAACG 59.204 55.000 10.35 15.17 0.00 4.10
3382 3482 2.526873 ACGACAACTCCCCAGCCT 60.527 61.111 0.00 0.00 0.00 4.58
3453 3553 2.027897 ACGCCGACACAACGCTAA 59.972 55.556 0.00 0.00 0.00 3.09
3631 4176 2.137528 TGCTCCCAACTGACGGTCA 61.138 57.895 10.88 10.88 0.00 4.02
3637 4182 3.605634 TCCCAACTGACGGTCATAATTG 58.394 45.455 11.86 15.04 0.00 2.32
3640 4185 2.038387 ACTGACGGTCATAATTGGGC 57.962 50.000 11.86 0.00 0.00 5.36
3890 4436 4.217550 CCGTGAGAGCCATTTTCCTTTTTA 59.782 41.667 0.00 0.00 0.00 1.52
3961 4508 9.442047 GTTTGGTATGAATATATCTAGCTTGCT 57.558 33.333 0.00 0.00 0.00 3.91
4024 4571 1.919240 ACGTGGGACTAGATGACACA 58.081 50.000 0.00 0.00 32.58 3.72
4029 4576 2.028112 TGGGACTAGATGACACAGTTGC 60.028 50.000 0.00 0.00 0.00 4.17
4039 4586 0.240945 ACACAGTTGCGCTAATTGGC 59.759 50.000 9.73 3.26 30.87 4.52
4070 4617 0.798776 CTCCAACCTGCAAGTAAGCG 59.201 55.000 0.00 0.00 37.31 4.68
4080 4627 3.521560 TGCAAGTAAGCGAACTATGGAG 58.478 45.455 0.00 0.00 37.31 3.86
4096 4643 6.257586 ACTATGGAGGTCAAGAGAACTACTT 58.742 40.000 0.00 0.00 43.33 2.24
4117 4664 6.536447 ACTTCCTCCGTTTTTATTTACTCCA 58.464 36.000 0.00 0.00 0.00 3.86
4158 4705 6.625873 AAGTCAAGCTTCCTAAACTTTGAG 57.374 37.500 0.00 0.00 30.06 3.02
4160 4707 5.994668 AGTCAAGCTTCCTAAACTTTGAGAG 59.005 40.000 0.00 0.00 0.00 3.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.670546 CACCCTTGTGACTAGCCGTG 60.671 60.000 0.00 0.00 45.76 4.94
20 21 1.671742 CACCCTTGTGACTAGCCGT 59.328 57.895 0.00 0.00 45.76 5.68
21 22 1.079127 CCACCCTTGTGACTAGCCG 60.079 63.158 0.00 0.00 45.76 5.52
35 36 2.668550 GACACGCTTCCCACCACC 60.669 66.667 0.00 0.00 0.00 4.61
88 89 4.966787 TCCCCAGCAACCAACCGC 62.967 66.667 0.00 0.00 0.00 5.68
116 117 4.729918 CAGACCAGCCACTGCCCC 62.730 72.222 0.00 0.00 38.69 5.80
117 118 3.909086 GACAGACCAGCCACTGCCC 62.909 68.421 0.00 0.00 38.69 5.36
118 119 2.359230 GACAGACCAGCCACTGCC 60.359 66.667 0.00 0.00 38.69 4.85
119 120 2.740055 CGACAGACCAGCCACTGC 60.740 66.667 0.00 0.00 37.61 4.40
120 121 2.047844 CCGACAGACCAGCCACTG 60.048 66.667 0.00 0.00 39.65 3.66
121 122 1.821061 CTTCCGACAGACCAGCCACT 61.821 60.000 0.00 0.00 0.00 4.00
122 123 1.374758 CTTCCGACAGACCAGCCAC 60.375 63.158 0.00 0.00 0.00 5.01
123 124 2.583441 CCTTCCGACAGACCAGCCA 61.583 63.158 0.00 0.00 0.00 4.75
124 125 2.266055 CCTTCCGACAGACCAGCC 59.734 66.667 0.00 0.00 0.00 4.85
125 126 1.374758 CACCTTCCGACAGACCAGC 60.375 63.158 0.00 0.00 0.00 4.85
126 127 1.293498 CCACCTTCCGACAGACCAG 59.707 63.158 0.00 0.00 0.00 4.00
127 128 2.214216 CCCACCTTCCGACAGACCA 61.214 63.158 0.00 0.00 0.00 4.02
128 129 1.889530 CTCCCACCTTCCGACAGACC 61.890 65.000 0.00 0.00 0.00 3.85
129 130 1.592223 CTCCCACCTTCCGACAGAC 59.408 63.158 0.00 0.00 0.00 3.51
130 131 1.609501 CCTCCCACCTTCCGACAGA 60.610 63.158 0.00 0.00 0.00 3.41
131 132 2.982130 CCTCCCACCTTCCGACAG 59.018 66.667 0.00 0.00 0.00 3.51
132 133 3.319198 GCCTCCCACCTTCCGACA 61.319 66.667 0.00 0.00 0.00 4.35
133 134 4.452733 CGCCTCCCACCTTCCGAC 62.453 72.222 0.00 0.00 0.00 4.79
161 162 3.636231 CCACCTTCCTGGCGACCA 61.636 66.667 0.00 0.00 40.22 4.02
162 163 4.410400 CCCACCTTCCTGGCGACC 62.410 72.222 0.00 0.00 40.22 4.79
163 164 3.316573 CTCCCACCTTCCTGGCGAC 62.317 68.421 0.00 0.00 40.22 5.19
164 165 3.003173 CTCCCACCTTCCTGGCGA 61.003 66.667 0.00 0.00 40.22 5.54
165 166 4.101448 CCTCCCACCTTCCTGGCG 62.101 72.222 0.00 0.00 40.22 5.69
166 167 4.432741 GCCTCCCACCTTCCTGGC 62.433 72.222 0.00 0.00 40.22 4.85
167 168 4.101448 CGCCTCCCACCTTCCTGG 62.101 72.222 0.00 0.00 42.93 4.45
168 169 4.101448 CCGCCTCCCACCTTCCTG 62.101 72.222 0.00 0.00 0.00 3.86
187 188 4.314440 TCGGTGACCAGCCACTGC 62.314 66.667 1.11 0.00 41.84 4.40
188 189 2.047844 CTCGGTGACCAGCCACTG 60.048 66.667 1.11 0.00 43.08 3.66
189 190 3.314331 CCTCGGTGACCAGCCACT 61.314 66.667 1.11 0.00 37.24 4.00
190 191 3.302347 CTCCTCGGTGACCAGCCAC 62.302 68.421 1.11 0.00 36.37 5.01
191 192 2.997315 CTCCTCGGTGACCAGCCA 60.997 66.667 1.11 0.00 0.00 4.75
192 193 3.775654 CCTCCTCGGTGACCAGCC 61.776 72.222 1.11 0.00 0.00 4.85
193 194 2.997897 ACCTCCTCGGTGACCAGC 60.998 66.667 1.11 0.00 46.80 4.85
274 275 3.866582 GATGCTCCCACCTCCCGG 61.867 72.222 0.00 0.00 0.00 5.73
275 276 4.227134 CGATGCTCCCACCTCCCG 62.227 72.222 0.00 0.00 0.00 5.14
276 277 4.554036 GCGATGCTCCCACCTCCC 62.554 72.222 0.00 0.00 0.00 4.30
277 278 4.899239 CGCGATGCTCCCACCTCC 62.899 72.222 0.00 0.00 0.00 4.30
286 287 0.320771 CCTTATAAGGGCGCGATGCT 60.321 55.000 22.09 0.00 45.43 3.79
287 288 1.912371 GCCTTATAAGGGCGCGATGC 61.912 60.000 28.81 11.15 46.56 3.91
288 289 2.162716 GCCTTATAAGGGCGCGATG 58.837 57.895 28.81 5.37 46.56 3.84
289 290 4.695560 GCCTTATAAGGGCGCGAT 57.304 55.556 28.81 0.00 46.56 4.58
297 298 3.640029 TCTGTTACCCCTCGCCTTATAAG 59.360 47.826 5.43 5.43 0.00 1.73
298 299 3.645434 TCTGTTACCCCTCGCCTTATAA 58.355 45.455 0.00 0.00 0.00 0.98
299 300 3.317455 TCTGTTACCCCTCGCCTTATA 57.683 47.619 0.00 0.00 0.00 0.98
300 301 2.170012 TCTGTTACCCCTCGCCTTAT 57.830 50.000 0.00 0.00 0.00 1.73
301 302 1.941377 TTCTGTTACCCCTCGCCTTA 58.059 50.000 0.00 0.00 0.00 2.69
302 303 1.286248 ATTCTGTTACCCCTCGCCTT 58.714 50.000 0.00 0.00 0.00 4.35
303 304 2.170012 TATTCTGTTACCCCTCGCCT 57.830 50.000 0.00 0.00 0.00 5.52
304 305 2.994186 TTATTCTGTTACCCCTCGCC 57.006 50.000 0.00 0.00 0.00 5.54
305 306 6.369065 CAGAATATTATTCTGTTACCCCTCGC 59.631 42.308 27.48 0.00 40.63 5.03
306 307 7.891183 CAGAATATTATTCTGTTACCCCTCG 57.109 40.000 27.48 7.94 40.63 4.63
395 396 9.400638 CACTGTTCAAAGTTTACACTTAAACAA 57.599 29.630 16.88 7.40 46.66 2.83
402 403 4.013728 TGCCACTGTTCAAAGTTTACACT 58.986 39.130 0.00 0.00 33.11 3.55
418 419 2.839098 CAGACTTGGGGTGCCACT 59.161 61.111 0.00 0.00 0.00 4.00
449 450 1.569479 GCTTGACCTCGACAAGTGGC 61.569 60.000 13.78 0.21 44.25 5.01
511 512 9.574458 GCACGTATGAATGTATCTAGATGTATT 57.426 33.333 15.79 14.21 0.00 1.89
512 513 8.739972 TGCACGTATGAATGTATCTAGATGTAT 58.260 33.333 15.79 6.61 0.00 2.29
513 514 8.106247 TGCACGTATGAATGTATCTAGATGTA 57.894 34.615 15.79 4.44 0.00 2.29
514 515 6.981722 TGCACGTATGAATGTATCTAGATGT 58.018 36.000 15.79 0.00 0.00 3.06
515 516 7.382218 TGTTGCACGTATGAATGTATCTAGATG 59.618 37.037 15.79 0.00 0.00 2.90
516 517 7.433680 TGTTGCACGTATGAATGTATCTAGAT 58.566 34.615 10.73 10.73 0.00 1.98
518 519 7.463469 TTGTTGCACGTATGAATGTATCTAG 57.537 36.000 0.00 0.00 0.00 2.43
519 520 7.835634 TTTGTTGCACGTATGAATGTATCTA 57.164 32.000 0.00 0.00 0.00 1.98
520 521 6.735678 TTTGTTGCACGTATGAATGTATCT 57.264 33.333 0.00 0.00 0.00 1.98
521 522 6.799441 TGTTTTGTTGCACGTATGAATGTATC 59.201 34.615 0.00 0.00 0.00 2.24
522 523 6.673106 TGTTTTGTTGCACGTATGAATGTAT 58.327 32.000 0.00 0.00 0.00 2.29
523 524 6.061231 TGTTTTGTTGCACGTATGAATGTA 57.939 33.333 0.00 0.00 0.00 2.29
524 525 4.926244 TGTTTTGTTGCACGTATGAATGT 58.074 34.783 0.00 0.00 0.00 2.71
525 526 5.458452 ACTTGTTTTGTTGCACGTATGAATG 59.542 36.000 0.00 0.00 0.00 2.67
526 527 5.587289 ACTTGTTTTGTTGCACGTATGAAT 58.413 33.333 0.00 0.00 0.00 2.57
527 528 4.987832 ACTTGTTTTGTTGCACGTATGAA 58.012 34.783 0.00 0.00 0.00 2.57
528 529 4.624336 ACTTGTTTTGTTGCACGTATGA 57.376 36.364 0.00 0.00 0.00 2.15
529 530 6.984740 ATTACTTGTTTTGTTGCACGTATG 57.015 33.333 0.00 0.00 0.00 2.39
531 532 5.677612 CGAATTACTTGTTTTGTTGCACGTA 59.322 36.000 0.00 0.00 0.00 3.57
532 533 4.497608 CGAATTACTTGTTTTGTTGCACGT 59.502 37.500 0.00 0.00 0.00 4.49
533 534 4.085822 CCGAATTACTTGTTTTGTTGCACG 60.086 41.667 0.00 0.00 0.00 5.34
535 536 5.250235 TCCGAATTACTTGTTTTGTTGCA 57.750 34.783 0.00 0.00 0.00 4.08
537 538 5.172411 CCGTTCCGAATTACTTGTTTTGTTG 59.828 40.000 0.00 0.00 0.00 3.33
538 539 5.066246 TCCGTTCCGAATTACTTGTTTTGTT 59.934 36.000 0.00 0.00 0.00 2.83
539 540 4.575645 TCCGTTCCGAATTACTTGTTTTGT 59.424 37.500 0.00 0.00 0.00 2.83
541 542 4.214758 CCTCCGTTCCGAATTACTTGTTTT 59.785 41.667 0.00 0.00 0.00 2.43
543 544 3.007182 TCCTCCGTTCCGAATTACTTGTT 59.993 43.478 0.00 0.00 0.00 2.83
544 545 2.564062 TCCTCCGTTCCGAATTACTTGT 59.436 45.455 0.00 0.00 0.00 3.16
545 546 3.187700 CTCCTCCGTTCCGAATTACTTG 58.812 50.000 0.00 0.00 0.00 3.16
546 547 2.167900 CCTCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
547 548 1.755380 CCTCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
548 549 1.202498 CCCTCCTCCGTTCCGAATTAC 60.202 57.143 0.00 0.00 0.00 1.89
549 550 1.117150 CCCTCCTCCGTTCCGAATTA 58.883 55.000 0.00 0.00 0.00 1.40
550 551 0.616679 TCCCTCCTCCGTTCCGAATT 60.617 55.000 0.00 0.00 0.00 2.17
551 552 1.001248 TCCCTCCTCCGTTCCGAAT 59.999 57.895 0.00 0.00 0.00 3.34
552 553 1.681327 CTCCCTCCTCCGTTCCGAA 60.681 63.158 0.00 0.00 0.00 4.30
553 554 1.565390 TACTCCCTCCTCCGTTCCGA 61.565 60.000 0.00 0.00 0.00 4.55
554 555 1.077212 TACTCCCTCCTCCGTTCCG 60.077 63.158 0.00 0.00 0.00 4.30
555 556 1.382692 CGTACTCCCTCCTCCGTTCC 61.383 65.000 0.00 0.00 0.00 3.62
556 557 0.679321 ACGTACTCCCTCCTCCGTTC 60.679 60.000 0.00 0.00 0.00 3.95
557 558 0.620556 TACGTACTCCCTCCTCCGTT 59.379 55.000 0.00 0.00 0.00 4.44
558 559 0.107459 GTACGTACTCCCTCCTCCGT 60.107 60.000 18.47 0.00 0.00 4.69
559 560 1.156645 CGTACGTACTCCCTCCTCCG 61.157 65.000 22.55 2.49 0.00 4.63
560 561 0.107459 ACGTACGTACTCCCTCCTCC 60.107 60.000 21.41 0.00 0.00 4.30
561 562 2.205911 GTACGTACGTACTCCCTCCTC 58.794 57.143 38.40 18.08 45.30 3.71
562 563 1.471676 CGTACGTACGTACTCCCTCCT 60.472 57.143 40.05 13.62 46.22 3.69
563 564 0.931005 CGTACGTACGTACTCCCTCC 59.069 60.000 40.05 22.55 46.22 4.30
577 578 3.740044 AAAACAAGATGGCATCGTACG 57.260 42.857 21.01 9.53 0.00 3.67
606 607 2.809446 CGATGATTCTTACACGGAGCA 58.191 47.619 0.00 0.00 0.00 4.26
636 674 2.358737 CAAGGCCTCCACCACGTC 60.359 66.667 5.23 0.00 0.00 4.34
730 774 3.194968 TGTATCGAGAAAGTTCAGGGACC 59.805 47.826 0.00 0.00 0.00 4.46
731 775 4.158025 TCTGTATCGAGAAAGTTCAGGGAC 59.842 45.833 0.00 0.00 0.00 4.46
733 777 4.720649 TCTGTATCGAGAAAGTTCAGGG 57.279 45.455 0.00 0.00 0.00 4.45
734 778 6.210078 GGTATCTGTATCGAGAAAGTTCAGG 58.790 44.000 0.00 0.00 0.00 3.86
735 779 5.910166 CGGTATCTGTATCGAGAAAGTTCAG 59.090 44.000 0.00 0.00 36.54 3.02
736 780 5.220989 CCGGTATCTGTATCGAGAAAGTTCA 60.221 44.000 0.00 0.00 36.54 3.18
737 781 5.213675 CCGGTATCTGTATCGAGAAAGTTC 58.786 45.833 0.00 0.00 36.54 3.01
738 782 4.499357 GCCGGTATCTGTATCGAGAAAGTT 60.499 45.833 1.90 0.00 36.54 2.66
739 783 3.004524 GCCGGTATCTGTATCGAGAAAGT 59.995 47.826 1.90 0.00 36.54 2.66
740 784 3.253677 AGCCGGTATCTGTATCGAGAAAG 59.746 47.826 1.90 0.00 36.54 2.62
741 785 3.220110 AGCCGGTATCTGTATCGAGAAA 58.780 45.455 1.90 0.00 36.54 2.52
742 786 2.860009 AGCCGGTATCTGTATCGAGAA 58.140 47.619 1.90 0.00 36.54 2.87
743 787 2.563261 AGCCGGTATCTGTATCGAGA 57.437 50.000 1.90 0.00 36.54 4.04
744 788 3.644884 AAAGCCGGTATCTGTATCGAG 57.355 47.619 1.90 0.00 36.54 4.04
745 789 5.618418 CGAATAAAGCCGGTATCTGTATCGA 60.618 44.000 1.90 0.00 36.54 3.59
746 790 4.557690 CGAATAAAGCCGGTATCTGTATCG 59.442 45.833 1.90 0.71 34.21 2.92
747 791 4.326548 GCGAATAAAGCCGGTATCTGTATC 59.673 45.833 1.90 0.00 0.00 2.24
748 792 4.243270 GCGAATAAAGCCGGTATCTGTAT 58.757 43.478 1.90 0.00 0.00 2.29
749 793 3.553508 GGCGAATAAAGCCGGTATCTGTA 60.554 47.826 1.90 0.00 45.58 2.74
750 794 2.480845 GCGAATAAAGCCGGTATCTGT 58.519 47.619 1.90 0.00 0.00 3.41
751 795 1.798813 GGCGAATAAAGCCGGTATCTG 59.201 52.381 1.90 0.00 45.58 2.90
752 796 2.165319 GGCGAATAAAGCCGGTATCT 57.835 50.000 1.90 0.00 45.58 1.98
779 823 7.277098 CGATTATAACTTGGAAGTCTTTTCCGA 59.723 37.037 1.87 0.00 41.43 4.55
831 877 5.992217 AGCAGTCCGATTCCAAGTATAATTC 59.008 40.000 0.00 0.00 0.00 2.17
833 879 5.552870 AGCAGTCCGATTCCAAGTATAAT 57.447 39.130 0.00 0.00 0.00 1.28
922 977 4.404324 CTTGCCGCGTGATATACTACTAG 58.596 47.826 4.92 0.00 0.00 2.57
1254 1333 4.715523 ACCGCCATGGACCCGTTG 62.716 66.667 18.40 0.40 42.00 4.10
1569 1651 1.483827 TGCTGAGTAGGATTGCAGAGG 59.516 52.381 0.00 0.00 0.00 3.69
1621 1703 4.402474 GGATTTTAGGATGTTGAACCCCAG 59.598 45.833 6.62 0.00 0.00 4.45
1635 1717 3.560068 CGATTCCCAAGACGGATTTTAGG 59.440 47.826 0.00 0.00 36.56 2.69
1655 1749 1.951602 TCTTTGTCACGGAGTCTTCGA 59.048 47.619 7.76 0.00 41.61 3.71
1773 1867 1.658994 GTGTGAAGGTTTCCGTGTCA 58.341 50.000 0.00 0.00 0.00 3.58
2287 2385 5.881443 CCGATAATACCTCCTTATCTCGACT 59.119 44.000 0.00 0.00 34.73 4.18
2497 2596 0.178975 TCAAGCCAATTTCCCACCGT 60.179 50.000 0.00 0.00 0.00 4.83
2610 2709 3.760738 TGGGTTGCACATAAAGTCATCA 58.239 40.909 0.00 0.00 0.00 3.07
2638 2737 1.300971 CCCAGACACTTGATGGCACG 61.301 60.000 0.00 0.00 39.81 5.34
2695 2794 1.058057 GAAAATGCGTGACGGCGTTC 61.058 55.000 16.19 10.08 41.08 3.95
2781 2880 2.026262 AGCCAAGGTTCCGTTGATGTAT 60.026 45.455 0.00 0.00 31.88 2.29
2837 2936 2.046285 GGCGGCTTACCAATGCAGT 61.046 57.895 0.00 0.00 34.57 4.40
2971 3070 1.226746 CTTGGTTCACACGGAAGGAC 58.773 55.000 0.00 0.00 35.82 3.85
3382 3482 3.437795 GAACCGAGGGAGCGACGA 61.438 66.667 0.00 0.00 0.00 4.20
3631 4176 6.443527 ACCTAATTTGTTCCAAGCCCAATTAT 59.556 34.615 0.00 0.00 0.00 1.28
3637 4182 2.496070 GGACCTAATTTGTTCCAAGCCC 59.504 50.000 0.00 0.00 0.00 5.19
3640 4185 3.439129 GTCCGGACCTAATTTGTTCCAAG 59.561 47.826 24.75 0.00 0.00 3.61
4039 4586 2.868583 CAGGTTGGAGTTCATATCTGCG 59.131 50.000 0.00 0.00 0.00 5.18
4045 4592 3.788227 ACTTGCAGGTTGGAGTTCATA 57.212 42.857 0.00 0.00 0.00 2.15
4070 4617 5.669164 AGTTCTCTTGACCTCCATAGTTC 57.331 43.478 0.00 0.00 0.00 3.01
4080 4627 3.119424 CGGAGGAAGTAGTTCTCTTGACC 60.119 52.174 10.10 3.57 32.72 4.02
4096 4643 5.867330 TGTGGAGTAAATAAAAACGGAGGA 58.133 37.500 0.00 0.00 0.00 3.71
4398 4948 7.846644 TTTCTTTTGACGGTTCACTTAACTA 57.153 32.000 0.00 0.00 38.23 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.