Multiple sequence alignment - TraesCS2B01G472200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G472200 chr2B 100.000 3678 0 0 1 3678 668681361 668685038 0.000000e+00 6793.0
1 TraesCS2B01G472200 chr2B 80.126 317 48 8 2900 3213 363444118 363444422 4.780000e-54 222.0
2 TraesCS2B01G472200 chr2A 93.487 2303 103 20 559 2844 699979947 699982219 0.000000e+00 3378.0
3 TraesCS2B01G472200 chr2A 79.116 249 37 7 273 508 745215113 745215359 1.370000e-34 158.0
4 TraesCS2B01G472200 chr2D 94.717 2158 90 14 700 2848 559830826 559832968 0.000000e+00 3332.0
5 TraesCS2B01G472200 chr2D 90.275 473 35 5 2846 3312 559834033 559834500 3.140000e-170 608.0
6 TraesCS2B01G472200 chr2D 87.537 337 21 11 3327 3655 559834489 559834812 1.610000e-98 370.0
7 TraesCS2B01G472200 chr2D 80.000 185 35 2 326 509 615027505 615027688 6.410000e-28 135.0
8 TraesCS2B01G472200 chr7D 79.280 1028 181 21 1616 2636 629310916 629311918 0.000000e+00 689.0
9 TraesCS2B01G472200 chr7D 83.333 246 25 6 273 506 478795811 478796052 2.880000e-51 213.0
10 TraesCS2B01G472200 chr7D 93.023 43 2 1 3183 3225 23518594 23518635 1.100000e-05 62.1
11 TraesCS2B01G472200 chr5D 82.131 291 39 7 2922 3209 5567159 5566879 1.710000e-58 237.0
12 TraesCS2B01G472200 chr4D 81.985 272 45 4 2909 3177 301509802 301510072 1.030000e-55 228.0
13 TraesCS2B01G472200 chr4D 81.022 274 44 4 2907 3173 204704178 204703906 1.030000e-50 211.0
14 TraesCS2B01G472200 chr4A 81.985 272 42 6 2906 3173 235663172 235662904 1.330000e-54 224.0
15 TraesCS2B01G472200 chr4A 87.671 73 9 0 1 73 297449781 297449709 6.540000e-13 86.1
16 TraesCS2B01G472200 chr4A 100.000 33 0 0 512 544 321329309 321329341 1.100000e-05 62.1
17 TraesCS2B01G472200 chr7B 83.871 248 24 7 273 508 504479920 504480163 4.780000e-54 222.0
18 TraesCS2B01G472200 chr3A 81.618 272 44 5 2906 3173 664136860 664136591 1.720000e-53 220.0
19 TraesCS2B01G472200 chr5B 81.784 269 42 5 2907 3173 490050791 490051054 6.180000e-53 219.0
20 TraesCS2B01G472200 chr4B 86.528 193 23 3 317 508 112038313 112038123 3.720000e-50 209.0
21 TraesCS2B01G472200 chr4B 76.147 327 57 17 2908 3226 537992350 537992663 6.360000e-33 152.0
22 TraesCS2B01G472200 chr4B 78.992 238 29 12 273 490 652289792 652290028 3.830000e-30 143.0
23 TraesCS2B01G472200 chr4B 74.618 327 61 18 2908 3226 208798718 208799030 1.390000e-24 124.0
24 TraesCS2B01G472200 chr4B 91.667 60 5 0 14 73 29730431 29730490 2.350000e-12 84.2
25 TraesCS2B01G472200 chr5A 80.515 272 47 4 2907 3173 700311842 700311572 1.730000e-48 204.0
26 TraesCS2B01G472200 chr5A 82.500 240 24 8 282 508 661659470 661659704 1.040000e-45 195.0
27 TraesCS2B01G472200 chr6D 84.277 159 21 4 350 507 38192013 38191858 6.360000e-33 152.0
28 TraesCS2B01G472200 chr6D 91.549 71 6 0 3 73 418272032 418271962 8.410000e-17 99.0
29 TraesCS2B01G472200 chr6B 76.000 325 55 17 2908 3226 110644837 110644530 2.960000e-31 147.0
30 TraesCS2B01G472200 chr6B 75.076 329 57 21 2908 3226 197417789 197417476 2.980000e-26 130.0
31 TraesCS2B01G472200 chr6B 77.660 188 29 6 276 450 563531683 563531870 6.500000e-18 102.0
32 TraesCS2B01G472200 chr1B 80.214 187 29 7 326 509 667350713 667350894 2.300000e-27 134.0
33 TraesCS2B01G472200 chr1B 74.312 327 63 18 2908 3226 74013141 74013454 6.450000e-23 119.0
34 TraesCS2B01G472200 chrUn 77.778 162 33 3 317 476 225284014 225284174 3.020000e-16 97.1
35 TraesCS2B01G472200 chrUn 77.778 162 33 3 317 476 322576953 322577113 3.020000e-16 97.1
36 TraesCS2B01G472200 chrUn 77.778 162 33 3 317 476 359567116 359566956 3.020000e-16 97.1
37 TraesCS2B01G472200 chrUn 77.778 162 33 3 317 476 386167706 386167546 3.020000e-16 97.1
38 TraesCS2B01G472200 chrUn 100.000 31 0 0 512 542 339374450 339374480 1.430000e-04 58.4
39 TraesCS2B01G472200 chrUn 100.000 31 0 0 512 542 391665866 391665896 1.430000e-04 58.4
40 TraesCS2B01G472200 chrUn 100.000 31 0 0 512 542 459619218 459619188 1.430000e-04 58.4
41 TraesCS2B01G472200 chr3B 89.062 64 6 1 1 64 829397049 829396987 1.100000e-10 78.7
42 TraesCS2B01G472200 chr7A 100.000 33 0 0 3183 3215 87025457 87025489 1.100000e-05 62.1
43 TraesCS2B01G472200 chr1A 100.000 28 0 0 273 300 22045008 22044981 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G472200 chr2B 668681361 668685038 3677 False 6793.000000 6793 100.000 1 3678 1 chr2B.!!$F2 3677
1 TraesCS2B01G472200 chr2A 699979947 699982219 2272 False 3378.000000 3378 93.487 559 2844 1 chr2A.!!$F1 2285
2 TraesCS2B01G472200 chr2D 559830826 559834812 3986 False 1436.666667 3332 90.843 700 3655 3 chr2D.!!$F2 2955
3 TraesCS2B01G472200 chr7D 629310916 629311918 1002 False 689.000000 689 79.280 1616 2636 1 chr7D.!!$F3 1020

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
29 30 0.033781 AATGTTGCATGGCACCACAC 59.966 50.0 0.0 0.0 38.71 3.82 F
273 274 0.036010 ATGCAAGCCTACGAGTTGCT 60.036 50.0 7.7 0.0 45.56 3.91 F
1899 1915 0.182775 AACTTCCTTGAACAGCCCGT 59.817 50.0 0.0 0.0 0.00 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1450 1460 0.316204 ATGGCAAGTCAACAAGCAGC 59.684 50.0 0.0 0.0 0.00 5.25 R
1963 1979 0.900421 GGAAGTAGCTTGGGTACGGT 59.100 55.0 0.0 0.0 40.83 4.83 R
3572 4681 0.035343 ACGGATGTGGACGAGAGAGA 60.035 55.0 0.0 0.0 0.00 3.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.923928 ATAAATAAAATGTTGCATGGCACC 57.076 33.333 0.00 0.00 38.71 5.01
26 27 3.977134 ATAAAATGTTGCATGGCACCA 57.023 38.095 0.00 0.00 38.71 4.17
27 28 1.881591 AAAATGTTGCATGGCACCAC 58.118 45.000 0.00 0.00 38.71 4.16
28 29 0.757512 AAATGTTGCATGGCACCACA 59.242 45.000 0.00 0.00 38.71 4.17
29 30 0.033781 AATGTTGCATGGCACCACAC 59.966 50.000 0.00 0.00 38.71 3.82
30 31 1.114119 ATGTTGCATGGCACCACACA 61.114 50.000 0.00 0.00 38.71 3.72
31 32 1.114119 TGTTGCATGGCACCACACAT 61.114 50.000 0.00 0.00 38.71 3.21
32 33 0.887247 GTTGCATGGCACCACACATA 59.113 50.000 0.00 0.00 38.71 2.29
33 34 1.477700 GTTGCATGGCACCACACATAT 59.522 47.619 0.00 0.00 38.71 1.78
34 35 1.104630 TGCATGGCACCACACATATG 58.895 50.000 0.00 0.00 31.71 1.78
35 36 1.105457 GCATGGCACCACACATATGT 58.895 50.000 1.41 1.41 40.80 2.29
36 37 1.477700 GCATGGCACCACACATATGTT 59.522 47.619 5.37 0.00 36.72 2.71
37 38 2.687425 GCATGGCACCACACATATGTTA 59.313 45.455 5.37 0.00 36.72 2.41
38 39 3.489059 GCATGGCACCACACATATGTTAC 60.489 47.826 5.37 0.00 36.72 2.50
39 40 3.712016 TGGCACCACACATATGTTACT 57.288 42.857 5.37 0.00 36.72 2.24
40 41 3.605634 TGGCACCACACATATGTTACTC 58.394 45.455 5.37 0.00 36.72 2.59
41 42 2.607635 GGCACCACACATATGTTACTCG 59.392 50.000 5.37 0.00 36.72 4.18
42 43 3.259064 GCACCACACATATGTTACTCGT 58.741 45.455 5.37 0.00 36.72 4.18
43 44 3.306166 GCACCACACATATGTTACTCGTC 59.694 47.826 5.37 0.00 36.72 4.20
44 45 4.490743 CACCACACATATGTTACTCGTCA 58.509 43.478 5.37 0.00 36.72 4.35
45 46 4.326278 CACCACACATATGTTACTCGTCAC 59.674 45.833 5.37 0.00 36.72 3.67
46 47 4.219944 ACCACACATATGTTACTCGTCACT 59.780 41.667 5.37 0.00 36.72 3.41
47 48 5.416639 ACCACACATATGTTACTCGTCACTA 59.583 40.000 5.37 0.00 36.72 2.74
48 49 6.096423 ACCACACATATGTTACTCGTCACTAT 59.904 38.462 5.37 0.00 36.72 2.12
49 50 7.283807 ACCACACATATGTTACTCGTCACTATA 59.716 37.037 5.37 0.00 36.72 1.31
50 51 7.803659 CCACACATATGTTACTCGTCACTATAG 59.196 40.741 5.37 0.00 36.72 1.31
51 52 8.557029 CACACATATGTTACTCGTCACTATAGA 58.443 37.037 5.37 0.00 36.72 1.98
52 53 9.286170 ACACATATGTTACTCGTCACTATAGAT 57.714 33.333 5.37 0.00 34.46 1.98
53 54 9.548208 CACATATGTTACTCGTCACTATAGATG 57.452 37.037 5.37 1.48 0.00 2.90
54 55 9.286170 ACATATGTTACTCGTCACTATAGATGT 57.714 33.333 6.78 0.00 0.00 3.06
57 58 8.905660 ATGTTACTCGTCACTATAGATGTAGT 57.094 34.615 6.78 5.87 35.34 2.73
58 59 9.993454 ATGTTACTCGTCACTATAGATGTAGTA 57.007 33.333 6.78 4.98 33.29 1.82
59 60 9.822185 TGTTACTCGTCACTATAGATGTAGTAA 57.178 33.333 6.78 10.11 33.29 2.24
61 62 9.822185 TTACTCGTCACTATAGATGTAGTAACA 57.178 33.333 6.78 0.00 40.69 2.41
63 64 9.993454 ACTCGTCACTATAGATGTAGTAACATA 57.007 33.333 6.78 0.00 46.49 2.29
88 89 8.644374 AAATTAGTAATGCAAGTTACTTCCCA 57.356 30.769 15.89 0.00 40.96 4.37
89 90 7.625828 ATTAGTAATGCAAGTTACTTCCCAC 57.374 36.000 15.89 0.00 40.96 4.61
90 91 5.242795 AGTAATGCAAGTTACTTCCCACT 57.757 39.130 6.86 0.00 40.96 4.00
91 92 6.368779 AGTAATGCAAGTTACTTCCCACTA 57.631 37.500 6.86 0.00 40.96 2.74
92 93 6.958767 AGTAATGCAAGTTACTTCCCACTAT 58.041 36.000 6.86 0.00 40.96 2.12
93 94 6.823689 AGTAATGCAAGTTACTTCCCACTATG 59.176 38.462 6.86 0.00 40.96 2.23
94 95 3.950397 TGCAAGTTACTTCCCACTATGG 58.050 45.455 0.00 0.00 37.25 2.74
95 96 3.585289 TGCAAGTTACTTCCCACTATGGA 59.415 43.478 0.00 0.00 40.96 3.41
96 97 4.227300 TGCAAGTTACTTCCCACTATGGAT 59.773 41.667 0.00 0.00 40.96 3.41
97 98 5.427157 TGCAAGTTACTTCCCACTATGGATA 59.573 40.000 0.00 0.00 40.96 2.59
98 99 5.992217 GCAAGTTACTTCCCACTATGGATAG 59.008 44.000 0.00 0.00 40.96 2.08
99 100 6.408206 GCAAGTTACTTCCCACTATGGATAGT 60.408 42.308 0.00 2.22 44.03 2.12
100 101 6.980416 AGTTACTTCCCACTATGGATAGTC 57.020 41.667 0.00 0.00 41.44 2.59
101 102 6.684538 AGTTACTTCCCACTATGGATAGTCT 58.315 40.000 0.00 0.00 41.44 3.24
102 103 7.133483 AGTTACTTCCCACTATGGATAGTCTT 58.867 38.462 0.00 0.00 41.44 3.01
103 104 8.287350 AGTTACTTCCCACTATGGATAGTCTTA 58.713 37.037 0.00 0.00 41.44 2.10
104 105 6.980416 ACTTCCCACTATGGATAGTCTTAC 57.020 41.667 0.00 0.00 41.44 2.34
105 106 6.441222 ACTTCCCACTATGGATAGTCTTACA 58.559 40.000 0.00 0.00 41.44 2.41
106 107 6.324254 ACTTCCCACTATGGATAGTCTTACAC 59.676 42.308 0.00 0.00 41.44 2.90
107 108 5.773091 TCCCACTATGGATAGTCTTACACA 58.227 41.667 0.00 0.00 41.44 3.72
108 109 6.382087 TCCCACTATGGATAGTCTTACACAT 58.618 40.000 0.00 0.00 41.44 3.21
109 110 6.844388 TCCCACTATGGATAGTCTTACACATT 59.156 38.462 0.00 0.00 41.44 2.71
110 111 7.347222 TCCCACTATGGATAGTCTTACACATTT 59.653 37.037 0.00 0.00 41.44 2.32
111 112 7.442364 CCCACTATGGATAGTCTTACACATTTG 59.558 40.741 0.00 0.00 41.44 2.32
112 113 8.204160 CCACTATGGATAGTCTTACACATTTGA 58.796 37.037 0.00 0.00 41.44 2.69
113 114 9.599866 CACTATGGATAGTCTTACACATTTGAA 57.400 33.333 0.00 0.00 41.44 2.69
117 118 9.685276 ATGGATAGTCTTACACATTTGAAATCA 57.315 29.630 0.00 0.00 0.00 2.57
118 119 9.685276 TGGATAGTCTTACACATTTGAAATCAT 57.315 29.630 0.00 0.00 0.00 2.45
122 123 8.627208 AGTCTTACACATTTGAAATCATCACT 57.373 30.769 0.00 0.00 37.92 3.41
123 124 9.071276 AGTCTTACACATTTGAAATCATCACTT 57.929 29.630 0.00 0.00 37.92 3.16
150 151 5.359194 TCCTGAAATACATGAGGAAGACC 57.641 43.478 0.00 0.00 0.00 3.85
151 152 4.782691 TCCTGAAATACATGAGGAAGACCA 59.217 41.667 0.00 0.00 38.94 4.02
152 153 5.250543 TCCTGAAATACATGAGGAAGACCAA 59.749 40.000 0.00 0.00 38.94 3.67
153 154 6.069440 TCCTGAAATACATGAGGAAGACCAAT 60.069 38.462 0.00 0.00 38.94 3.16
154 155 6.604795 CCTGAAATACATGAGGAAGACCAATT 59.395 38.462 0.00 0.00 38.94 2.32
155 156 7.775093 CCTGAAATACATGAGGAAGACCAATTA 59.225 37.037 0.00 0.00 38.94 1.40
156 157 8.506168 TGAAATACATGAGGAAGACCAATTAC 57.494 34.615 0.00 0.00 38.94 1.89
157 158 7.556275 TGAAATACATGAGGAAGACCAATTACC 59.444 37.037 0.00 0.00 38.94 2.85
158 159 4.236527 ACATGAGGAAGACCAATTACCC 57.763 45.455 0.00 0.00 38.94 3.69
159 160 3.852578 ACATGAGGAAGACCAATTACCCT 59.147 43.478 0.00 0.00 38.94 4.34
160 161 5.036916 ACATGAGGAAGACCAATTACCCTA 58.963 41.667 0.00 0.00 38.94 3.53
161 162 5.491078 ACATGAGGAAGACCAATTACCCTAA 59.509 40.000 0.00 0.00 38.94 2.69
162 163 6.011981 ACATGAGGAAGACCAATTACCCTAAA 60.012 38.462 0.00 0.00 38.94 1.85
163 164 5.812286 TGAGGAAGACCAATTACCCTAAAC 58.188 41.667 0.00 0.00 38.94 2.01
164 165 5.311121 TGAGGAAGACCAATTACCCTAAACA 59.689 40.000 0.00 0.00 38.94 2.83
165 166 6.183361 TGAGGAAGACCAATTACCCTAAACAA 60.183 38.462 0.00 0.00 38.94 2.83
166 167 6.616577 AGGAAGACCAATTACCCTAAACAAA 58.383 36.000 0.00 0.00 38.94 2.83
167 168 7.070629 AGGAAGACCAATTACCCTAAACAAAA 58.929 34.615 0.00 0.00 38.94 2.44
168 169 7.232737 AGGAAGACCAATTACCCTAAACAAAAG 59.767 37.037 0.00 0.00 38.94 2.27
169 170 6.911250 AGACCAATTACCCTAAACAAAAGG 57.089 37.500 0.00 0.00 0.00 3.11
170 171 6.616577 AGACCAATTACCCTAAACAAAAGGA 58.383 36.000 0.00 0.00 36.08 3.36
171 172 7.070629 AGACCAATTACCCTAAACAAAAGGAA 58.929 34.615 0.00 0.00 36.08 3.36
172 173 7.232737 AGACCAATTACCCTAAACAAAAGGAAG 59.767 37.037 0.00 0.00 36.08 3.46
173 174 7.070629 ACCAATTACCCTAAACAAAAGGAAGA 58.929 34.615 0.00 0.00 36.08 2.87
174 175 7.014905 ACCAATTACCCTAAACAAAAGGAAGAC 59.985 37.037 0.00 0.00 36.08 3.01
175 176 7.014808 CCAATTACCCTAAACAAAAGGAAGACA 59.985 37.037 0.00 0.00 36.08 3.41
176 177 8.417884 CAATTACCCTAAACAAAAGGAAGACAA 58.582 33.333 0.00 0.00 36.08 3.18
177 178 7.576861 TTACCCTAAACAAAAGGAAGACAAG 57.423 36.000 0.00 0.00 36.08 3.16
178 179 5.762279 ACCCTAAACAAAAGGAAGACAAGA 58.238 37.500 0.00 0.00 36.08 3.02
179 180 5.593095 ACCCTAAACAAAAGGAAGACAAGAC 59.407 40.000 0.00 0.00 36.08 3.01
180 181 5.009710 CCCTAAACAAAAGGAAGACAAGACC 59.990 44.000 0.00 0.00 36.08 3.85
181 182 5.592688 CCTAAACAAAAGGAAGACAAGACCA 59.407 40.000 0.00 0.00 36.08 4.02
182 183 5.993748 AAACAAAAGGAAGACAAGACCAA 57.006 34.783 0.00 0.00 0.00 3.67
183 184 5.993748 AACAAAAGGAAGACAAGACCAAA 57.006 34.783 0.00 0.00 0.00 3.28
184 185 5.993748 ACAAAAGGAAGACAAGACCAAAA 57.006 34.783 0.00 0.00 0.00 2.44
185 186 6.544928 ACAAAAGGAAGACAAGACCAAAAT 57.455 33.333 0.00 0.00 0.00 1.82
186 187 6.340522 ACAAAAGGAAGACAAGACCAAAATG 58.659 36.000 0.00 0.00 0.00 2.32
187 188 6.070824 ACAAAAGGAAGACAAGACCAAAATGT 60.071 34.615 0.00 0.00 0.00 2.71
188 189 7.123547 ACAAAAGGAAGACAAGACCAAAATGTA 59.876 33.333 0.00 0.00 0.00 2.29
189 190 7.839680 AAAGGAAGACAAGACCAAAATGTAT 57.160 32.000 0.00 0.00 0.00 2.29
190 191 8.934023 AAAGGAAGACAAGACCAAAATGTATA 57.066 30.769 0.00 0.00 0.00 1.47
191 192 9.533831 AAAGGAAGACAAGACCAAAATGTATAT 57.466 29.630 0.00 0.00 0.00 0.86
199 200 9.693739 ACAAGACCAAAATGTATATATTGTCCA 57.306 29.630 0.00 0.00 0.00 4.02
202 203 8.796475 AGACCAAAATGTATATATTGTCCATGC 58.204 33.333 0.00 0.00 0.00 4.06
203 204 7.895759 ACCAAAATGTATATATTGTCCATGCC 58.104 34.615 0.00 0.00 0.00 4.40
204 205 7.508636 ACCAAAATGTATATATTGTCCATGCCA 59.491 33.333 0.00 0.00 0.00 4.92
205 206 8.533657 CCAAAATGTATATATTGTCCATGCCAT 58.466 33.333 0.00 0.00 0.00 4.40
206 207 9.577110 CAAAATGTATATATTGTCCATGCCATC 57.423 33.333 0.00 0.00 0.00 3.51
207 208 8.882557 AAATGTATATATTGTCCATGCCATCA 57.117 30.769 0.00 0.00 0.00 3.07
208 209 8.882557 AATGTATATATTGTCCATGCCATCAA 57.117 30.769 0.00 0.00 0.00 2.57
209 210 7.686438 TGTATATATTGTCCATGCCATCAAC 57.314 36.000 0.00 0.00 0.00 3.18
210 211 6.658816 TGTATATATTGTCCATGCCATCAACC 59.341 38.462 0.00 0.00 0.00 3.77
211 212 2.234896 ATTGTCCATGCCATCAACCA 57.765 45.000 0.00 0.00 0.00 3.67
212 213 2.006805 TTGTCCATGCCATCAACCAA 57.993 45.000 0.00 0.00 0.00 3.67
213 214 2.234896 TGTCCATGCCATCAACCAAT 57.765 45.000 0.00 0.00 0.00 3.16
214 215 2.538222 TGTCCATGCCATCAACCAATT 58.462 42.857 0.00 0.00 0.00 2.32
215 216 2.905085 TGTCCATGCCATCAACCAATTT 59.095 40.909 0.00 0.00 0.00 1.82
216 217 3.055963 TGTCCATGCCATCAACCAATTTC 60.056 43.478 0.00 0.00 0.00 2.17
217 218 3.196254 GTCCATGCCATCAACCAATTTCT 59.804 43.478 0.00 0.00 0.00 2.52
218 219 3.839490 TCCATGCCATCAACCAATTTCTT 59.161 39.130 0.00 0.00 0.00 2.52
219 220 5.022122 TCCATGCCATCAACCAATTTCTTA 58.978 37.500 0.00 0.00 0.00 2.10
220 221 5.483231 TCCATGCCATCAACCAATTTCTTAA 59.517 36.000 0.00 0.00 0.00 1.85
221 222 6.013898 TCCATGCCATCAACCAATTTCTTAAA 60.014 34.615 0.00 0.00 0.00 1.52
222 223 6.824704 CCATGCCATCAACCAATTTCTTAAAT 59.175 34.615 0.00 0.00 0.00 1.40
223 224 7.201661 CCATGCCATCAACCAATTTCTTAAATG 60.202 37.037 0.00 0.00 0.00 2.32
224 225 7.002250 TGCCATCAACCAATTTCTTAAATGA 57.998 32.000 0.00 0.00 0.00 2.57
225 226 6.873076 TGCCATCAACCAATTTCTTAAATGAC 59.127 34.615 0.00 0.00 0.00 3.06
226 227 6.873076 GCCATCAACCAATTTCTTAAATGACA 59.127 34.615 0.00 0.00 0.00 3.58
227 228 7.387397 GCCATCAACCAATTTCTTAAATGACAA 59.613 33.333 0.00 0.00 0.00 3.18
228 229 8.928733 CCATCAACCAATTTCTTAAATGACAAG 58.071 33.333 0.00 0.00 0.00 3.16
229 230 7.945033 TCAACCAATTTCTTAAATGACAAGC 57.055 32.000 0.00 0.00 0.00 4.01
230 231 6.640499 TCAACCAATTTCTTAAATGACAAGCG 59.360 34.615 0.00 0.00 0.00 4.68
231 232 6.084326 ACCAATTTCTTAAATGACAAGCGT 57.916 33.333 0.00 0.00 0.00 5.07
232 233 7.209471 ACCAATTTCTTAAATGACAAGCGTA 57.791 32.000 0.00 0.00 0.00 4.42
233 234 7.826690 ACCAATTTCTTAAATGACAAGCGTAT 58.173 30.769 0.00 0.00 0.00 3.06
234 235 8.303876 ACCAATTTCTTAAATGACAAGCGTATT 58.696 29.630 0.00 0.00 0.00 1.89
235 236 9.781834 CCAATTTCTTAAATGACAAGCGTATTA 57.218 29.630 0.00 0.00 0.00 0.98
237 238 9.503427 AATTTCTTAAATGACAAGCGTATTAGC 57.497 29.630 0.00 0.00 37.41 3.09
252 253 7.653767 GCGTATTAGCTGGTACAAGATAATT 57.346 36.000 22.48 9.74 38.70 1.40
253 254 8.752766 GCGTATTAGCTGGTACAAGATAATTA 57.247 34.615 22.48 8.93 38.70 1.40
254 255 9.199982 GCGTATTAGCTGGTACAAGATAATTAA 57.800 33.333 22.48 6.40 38.70 1.40
258 259 8.972458 TTAGCTGGTACAAGATAATTAATGCA 57.028 30.769 3.78 0.00 38.70 3.96
259 260 7.880160 AGCTGGTACAAGATAATTAATGCAA 57.120 32.000 0.00 0.00 38.70 4.08
260 261 7.934457 AGCTGGTACAAGATAATTAATGCAAG 58.066 34.615 0.00 0.00 38.70 4.01
261 262 6.638468 GCTGGTACAAGATAATTAATGCAAGC 59.362 38.462 0.00 0.00 38.70 4.01
262 263 7.038154 TGGTACAAGATAATTAATGCAAGCC 57.962 36.000 0.00 0.00 31.92 4.35
263 264 6.833416 TGGTACAAGATAATTAATGCAAGCCT 59.167 34.615 0.00 0.00 31.92 4.58
264 265 7.996066 TGGTACAAGATAATTAATGCAAGCCTA 59.004 33.333 0.00 0.00 31.92 3.93
265 266 8.290325 GGTACAAGATAATTAATGCAAGCCTAC 58.710 37.037 0.00 0.00 0.00 3.18
266 267 6.959361 ACAAGATAATTAATGCAAGCCTACG 58.041 36.000 0.00 0.00 0.00 3.51
267 268 6.765989 ACAAGATAATTAATGCAAGCCTACGA 59.234 34.615 0.00 0.00 0.00 3.43
268 269 7.041780 ACAAGATAATTAATGCAAGCCTACGAG 60.042 37.037 0.00 0.00 0.00 4.18
269 270 6.525629 AGATAATTAATGCAAGCCTACGAGT 58.474 36.000 0.00 0.00 0.00 4.18
270 271 6.992715 AGATAATTAATGCAAGCCTACGAGTT 59.007 34.615 0.00 0.00 0.00 3.01
271 272 4.882671 ATTAATGCAAGCCTACGAGTTG 57.117 40.909 0.00 0.00 0.00 3.16
272 273 0.804989 AATGCAAGCCTACGAGTTGC 59.195 50.000 0.00 0.00 45.56 4.17
273 274 0.036010 ATGCAAGCCTACGAGTTGCT 60.036 50.000 7.70 0.00 45.56 3.91
274 275 0.250295 TGCAAGCCTACGAGTTGCTT 60.250 50.000 7.70 6.80 45.56 3.91
275 276 0.444260 GCAAGCCTACGAGTTGCTTC 59.556 55.000 8.92 3.44 43.10 3.86
276 277 1.079503 CAAGCCTACGAGTTGCTTCC 58.920 55.000 8.92 0.00 43.10 3.46
277 278 0.977395 AAGCCTACGAGTTGCTTCCT 59.023 50.000 6.80 0.00 41.23 3.36
278 279 0.533032 AGCCTACGAGTTGCTTCCTC 59.467 55.000 0.00 0.00 29.17 3.71
279 280 0.533032 GCCTACGAGTTGCTTCCTCT 59.467 55.000 0.00 0.00 0.00 3.69
280 281 1.737363 GCCTACGAGTTGCTTCCTCTG 60.737 57.143 0.00 0.00 0.00 3.35
281 282 1.546476 CCTACGAGTTGCTTCCTCTGT 59.454 52.381 0.00 0.00 0.00 3.41
282 283 2.028930 CCTACGAGTTGCTTCCTCTGTT 60.029 50.000 0.00 0.00 0.00 3.16
283 284 2.622064 ACGAGTTGCTTCCTCTGTTT 57.378 45.000 0.00 0.00 0.00 2.83
284 285 2.919228 ACGAGTTGCTTCCTCTGTTTT 58.081 42.857 0.00 0.00 0.00 2.43
285 286 3.279434 ACGAGTTGCTTCCTCTGTTTTT 58.721 40.909 0.00 0.00 0.00 1.94
286 287 4.448210 ACGAGTTGCTTCCTCTGTTTTTA 58.552 39.130 0.00 0.00 0.00 1.52
287 288 5.063880 ACGAGTTGCTTCCTCTGTTTTTAT 58.936 37.500 0.00 0.00 0.00 1.40
288 289 5.531287 ACGAGTTGCTTCCTCTGTTTTTATT 59.469 36.000 0.00 0.00 0.00 1.40
289 290 6.039382 ACGAGTTGCTTCCTCTGTTTTTATTT 59.961 34.615 0.00 0.00 0.00 1.40
290 291 7.227910 ACGAGTTGCTTCCTCTGTTTTTATTTA 59.772 33.333 0.00 0.00 0.00 1.40
291 292 7.534239 CGAGTTGCTTCCTCTGTTTTTATTTAC 59.466 37.037 0.00 0.00 0.00 2.01
292 293 8.465273 AGTTGCTTCCTCTGTTTTTATTTACT 57.535 30.769 0.00 0.00 0.00 2.24
293 294 8.568794 AGTTGCTTCCTCTGTTTTTATTTACTC 58.431 33.333 0.00 0.00 0.00 2.59
294 295 7.448748 TGCTTCCTCTGTTTTTATTTACTCC 57.551 36.000 0.00 0.00 0.00 3.85
295 296 6.148811 TGCTTCCTCTGTTTTTATTTACTCCG 59.851 38.462 0.00 0.00 0.00 4.63
296 297 6.490566 TTCCTCTGTTTTTATTTACTCCGC 57.509 37.500 0.00 0.00 0.00 5.54
297 298 5.553123 TCCTCTGTTTTTATTTACTCCGCA 58.447 37.500 0.00 0.00 0.00 5.69
298 299 6.177610 TCCTCTGTTTTTATTTACTCCGCAT 58.822 36.000 0.00 0.00 0.00 4.73
299 300 6.657541 TCCTCTGTTTTTATTTACTCCGCATT 59.342 34.615 0.00 0.00 0.00 3.56
300 301 7.825270 TCCTCTGTTTTTATTTACTCCGCATTA 59.175 33.333 0.00 0.00 0.00 1.90
301 302 8.455682 CCTCTGTTTTTATTTACTCCGCATTAA 58.544 33.333 0.00 0.00 0.00 1.40
302 303 9.274065 CTCTGTTTTTATTTACTCCGCATTAAC 57.726 33.333 0.00 0.00 0.00 2.01
303 304 9.005777 TCTGTTTTTATTTACTCCGCATTAACT 57.994 29.630 0.00 0.00 0.00 2.24
304 305 9.620660 CTGTTTTTATTTACTCCGCATTAACTT 57.379 29.630 0.00 0.00 0.00 2.66
305 306 9.968870 TGTTTTTATTTACTCCGCATTAACTTT 57.031 25.926 0.00 0.00 0.00 2.66
308 309 9.615295 TTTTATTTACTCCGCATTAACTTTGAC 57.385 29.630 0.00 0.00 0.00 3.18
309 310 6.811253 ATTTACTCCGCATTAACTTTGACA 57.189 33.333 0.00 0.00 0.00 3.58
310 311 5.856126 TTACTCCGCATTAACTTTGACAG 57.144 39.130 0.00 0.00 0.00 3.51
311 312 4.002906 ACTCCGCATTAACTTTGACAGA 57.997 40.909 0.00 0.00 0.00 3.41
312 313 4.385825 ACTCCGCATTAACTTTGACAGAA 58.614 39.130 0.00 0.00 0.00 3.02
313 314 4.452455 ACTCCGCATTAACTTTGACAGAAG 59.548 41.667 0.00 0.00 0.00 2.85
314 315 4.385825 TCCGCATTAACTTTGACAGAAGT 58.614 39.130 0.00 0.00 41.44 3.01
315 316 4.213270 TCCGCATTAACTTTGACAGAAGTG 59.787 41.667 4.48 0.00 39.68 3.16
316 317 4.213270 CCGCATTAACTTTGACAGAAGTGA 59.787 41.667 4.48 0.00 39.68 3.41
317 318 5.277779 CCGCATTAACTTTGACAGAAGTGAA 60.278 40.000 4.48 4.23 39.68 3.18
318 319 5.621228 CGCATTAACTTTGACAGAAGTGAAC 59.379 40.000 4.48 0.00 39.68 3.18
319 320 6.511767 CGCATTAACTTTGACAGAAGTGAACT 60.512 38.462 4.48 0.00 39.68 3.01
320 321 7.196331 GCATTAACTTTGACAGAAGTGAACTT 58.804 34.615 0.00 0.00 39.68 2.66
321 322 7.702348 GCATTAACTTTGACAGAAGTGAACTTT 59.298 33.333 0.00 0.00 39.68 2.66
408 409 6.513806 TTCAATGATGAATCCAACGACATT 57.486 33.333 0.00 0.00 40.59 2.71
409 410 5.882553 TCAATGATGAATCCAACGACATTG 58.117 37.500 0.00 0.00 42.08 2.82
410 411 5.647225 TCAATGATGAATCCAACGACATTGA 59.353 36.000 0.02 0.02 44.86 2.57
411 412 6.319405 TCAATGATGAATCCAACGACATTGAT 59.681 34.615 0.02 0.00 43.41 2.57
412 413 6.704289 ATGATGAATCCAACGACATTGATT 57.296 33.333 0.00 0.00 41.23 2.57
413 414 6.513806 TGATGAATCCAACGACATTGATTT 57.486 33.333 0.00 0.00 41.23 2.17
414 415 6.324042 TGATGAATCCAACGACATTGATTTG 58.676 36.000 0.00 0.00 41.23 2.32
415 416 5.703978 TGAATCCAACGACATTGATTTGT 57.296 34.783 0.00 0.00 41.23 2.83
416 417 6.083098 TGAATCCAACGACATTGATTTGTT 57.917 33.333 0.00 0.00 41.23 2.83
417 418 5.919707 TGAATCCAACGACATTGATTTGTTG 59.080 36.000 0.00 0.00 41.23 3.33
420 421 4.952445 CAACGACATTGATTTGTTGGTG 57.048 40.909 0.00 0.00 41.14 4.17
421 422 4.358851 CAACGACATTGATTTGTTGGTGT 58.641 39.130 2.36 0.00 41.76 4.16
422 423 5.515184 CAACGACATTGATTTGTTGGTGTA 58.485 37.500 2.36 0.00 41.76 2.90
423 424 5.957842 ACGACATTGATTTGTTGGTGTAT 57.042 34.783 0.00 0.00 35.64 2.29
424 425 7.301789 CAACGACATTGATTTGTTGGTGTATA 58.698 34.615 2.36 0.00 41.76 1.47
425 426 7.624360 ACGACATTGATTTGTTGGTGTATAT 57.376 32.000 0.00 0.00 35.64 0.86
426 427 8.725405 ACGACATTGATTTGTTGGTGTATATA 57.275 30.769 0.00 0.00 35.64 0.86
427 428 9.337396 ACGACATTGATTTGTTGGTGTATATAT 57.663 29.630 0.00 0.00 35.64 0.86
458 459 7.671495 ATTTTTCTGCAAACTTGTTGAAAGT 57.329 28.000 0.00 0.00 35.14 2.66
459 460 7.489574 TTTTTCTGCAAACTTGTTGAAAGTT 57.510 28.000 0.00 0.00 41.82 2.66
461 462 8.594881 TTTTCTGCAAACTTGTTGAAAGTTTA 57.405 26.923 14.04 2.12 45.57 2.01
462 463 8.770438 TTTCTGCAAACTTGTTGAAAGTTTAT 57.230 26.923 14.04 0.00 45.57 1.40
463 464 9.862371 TTTCTGCAAACTTGTTGAAAGTTTATA 57.138 25.926 14.04 7.17 45.57 0.98
464 465 9.862371 TTCTGCAAACTTGTTGAAAGTTTATAA 57.138 25.926 14.04 5.83 45.57 0.98
465 466 9.296400 TCTGCAAACTTGTTGAAAGTTTATAAC 57.704 29.630 14.04 7.81 45.57 1.89
466 467 8.109843 TGCAAACTTGTTGAAAGTTTATAACG 57.890 30.769 14.04 5.21 45.57 3.18
467 468 7.755822 TGCAAACTTGTTGAAAGTTTATAACGT 59.244 29.630 14.04 0.00 45.57 3.99
468 469 8.588789 GCAAACTTGTTGAAAGTTTATAACGTT 58.411 29.630 14.04 5.88 45.57 3.99
491 492 9.731519 CGTTTAACTTTAGACAAACCTAATACG 57.268 33.333 0.00 0.00 0.00 3.06
492 493 9.533983 GTTTAACTTTAGACAAACCTAATACGC 57.466 33.333 0.00 0.00 0.00 4.42
493 494 8.830201 TTAACTTTAGACAAACCTAATACGCA 57.170 30.769 0.00 0.00 0.00 5.24
494 495 7.733402 AACTTTAGACAAACCTAATACGCAA 57.267 32.000 0.00 0.00 0.00 4.85
496 497 7.156673 ACTTTAGACAAACCTAATACGCAAGA 58.843 34.615 0.00 0.00 43.62 3.02
497 498 7.331193 ACTTTAGACAAACCTAATACGCAAGAG 59.669 37.037 0.00 0.00 43.62 2.85
498 499 5.148651 AGACAAACCTAATACGCAAGAGT 57.851 39.130 0.00 0.00 43.62 3.24
499 500 6.276832 AGACAAACCTAATACGCAAGAGTA 57.723 37.500 0.00 0.00 43.62 2.59
500 501 6.098017 AGACAAACCTAATACGCAAGAGTAC 58.902 40.000 0.00 0.00 43.62 2.73
501 502 5.786311 ACAAACCTAATACGCAAGAGTACA 58.214 37.500 0.00 0.00 43.62 2.90
502 503 6.403878 ACAAACCTAATACGCAAGAGTACAT 58.596 36.000 0.00 0.00 43.62 2.29
503 504 7.549839 ACAAACCTAATACGCAAGAGTACATA 58.450 34.615 0.00 0.00 43.62 2.29
504 505 8.036575 ACAAACCTAATACGCAAGAGTACATAA 58.963 33.333 0.00 0.00 43.62 1.90
505 506 8.875803 CAAACCTAATACGCAAGAGTACATAAA 58.124 33.333 0.00 0.00 43.62 1.40
506 507 9.439500 AAACCTAATACGCAAGAGTACATAAAA 57.561 29.630 0.00 0.00 43.62 1.52
507 508 9.439500 AACCTAATACGCAAGAGTACATAAAAA 57.561 29.630 0.00 0.00 43.62 1.94
508 509 9.609346 ACCTAATACGCAAGAGTACATAAAAAT 57.391 29.630 0.00 0.00 43.62 1.82
519 520 9.950680 AAGAGTACATAAAAATTCAATATGCGG 57.049 29.630 0.00 0.00 31.66 5.69
520 521 9.337396 AGAGTACATAAAAATTCAATATGCGGA 57.663 29.630 0.00 0.00 31.66 5.54
521 522 9.944663 GAGTACATAAAAATTCAATATGCGGAA 57.055 29.630 0.00 0.00 31.66 4.30
537 538 9.927668 AATATGCGGAATAAATAAAAATGGAGG 57.072 29.630 0.00 0.00 0.00 4.30
538 539 6.155475 TGCGGAATAAATAAAAATGGAGGG 57.845 37.500 0.00 0.00 0.00 4.30
539 540 5.894393 TGCGGAATAAATAAAAATGGAGGGA 59.106 36.000 0.00 0.00 0.00 4.20
540 541 6.040391 TGCGGAATAAATAAAAATGGAGGGAG 59.960 38.462 0.00 0.00 0.00 4.30
541 542 6.040504 GCGGAATAAATAAAAATGGAGGGAGT 59.959 38.462 0.00 0.00 0.00 3.85
542 543 7.229907 GCGGAATAAATAAAAATGGAGGGAGTA 59.770 37.037 0.00 0.00 0.00 2.59
543 544 9.297037 CGGAATAAATAAAAATGGAGGGAGTAT 57.703 33.333 0.00 0.00 0.00 2.12
549 550 9.588096 AAATAAAAATGGAGGGAGTATATGACC 57.412 33.333 0.00 0.00 0.00 4.02
550 551 6.848562 AAAAATGGAGGGAGTATATGACCT 57.151 37.500 0.00 0.00 35.67 3.85
551 552 5.832539 AAATGGAGGGAGTATATGACCTG 57.167 43.478 0.00 0.00 32.42 4.00
552 553 3.260269 TGGAGGGAGTATATGACCTGG 57.740 52.381 0.00 0.00 32.42 4.45
553 554 1.903183 GGAGGGAGTATATGACCTGGC 59.097 57.143 0.00 0.00 32.42 4.85
554 555 2.493687 GGAGGGAGTATATGACCTGGCT 60.494 54.545 0.00 0.00 32.42 4.75
555 556 3.245658 GGAGGGAGTATATGACCTGGCTA 60.246 52.174 0.00 0.00 32.42 3.93
556 557 4.020543 GAGGGAGTATATGACCTGGCTAG 58.979 52.174 0.00 0.00 32.42 3.42
576 577 2.772287 GGCTGGCTAGGCTAATTACAG 58.228 52.381 16.84 5.54 45.44 2.74
579 580 4.020128 GGCTGGCTAGGCTAATTACAGTAT 60.020 45.833 16.84 0.00 45.44 2.12
692 693 4.944962 TGTTGTCAAGACAGTCAAAGTG 57.055 40.909 2.66 0.00 42.94 3.16
711 712 2.108514 CACGTATGGGTGCTGCCAG 61.109 63.158 0.00 0.00 39.65 4.85
730 731 3.796764 TGTGCCAAGATGACACACA 57.203 47.368 0.00 0.00 39.29 3.72
731 732 2.049888 TGTGCCAAGATGACACACAA 57.950 45.000 0.00 0.00 39.29 3.33
832 838 6.638610 TGAACCATGAAAACAACACAAAGAT 58.361 32.000 0.00 0.00 0.00 2.40
858 864 8.689061 TCTAATAACAGTAGGATTCGCTAACAA 58.311 33.333 0.00 0.00 0.00 2.83
916 922 0.546598 CCCTACTAAACCCCTGGCTG 59.453 60.000 0.00 0.00 0.00 4.85
1068 1075 0.885596 GCTCATGGCTCATCTCCTGC 60.886 60.000 0.00 0.00 38.06 4.85
1099 1106 0.247736 CCAGTTCTTCCACCTCTCCG 59.752 60.000 0.00 0.00 0.00 4.63
1111 1118 2.882137 CACCTCTCCGTCTTCTCCTATC 59.118 54.545 0.00 0.00 0.00 2.08
1121 1128 2.282958 CTCCTATCGGCCCCGCTA 60.283 66.667 0.00 0.00 39.59 4.26
1191 1198 2.610233 AGCTTCCTGCCAGCTCCT 60.610 61.111 0.00 0.00 44.77 3.69
1302 1312 1.000394 TCGCGGTTCAATGTTCTCAGA 60.000 47.619 6.13 0.00 0.00 3.27
1361 1371 0.752658 CACGTATGCTCCCTCATGGA 59.247 55.000 0.00 0.00 42.41 3.41
1440 1450 1.767692 GGGTGTCATCCCCAACACT 59.232 57.895 5.70 0.00 44.12 3.55
1443 1453 1.074775 TGTCATCCCCAACACTGGC 59.925 57.895 0.00 0.00 41.99 4.85
1450 1460 0.609131 CCCCAACACTGGCTGGTAAG 60.609 60.000 0.00 0.00 41.99 2.34
1488 1498 3.073086 CCATTAATGGCGTCGGTCA 57.927 52.632 21.32 0.00 41.75 4.02
1527 1540 3.141398 CGGCATTCATGGTGCTTATACT 58.859 45.455 18.91 0.00 42.16 2.12
1579 1595 2.300152 CAGGTATGCCACGGATCAGTAT 59.700 50.000 1.54 0.00 37.19 2.12
1583 1599 1.337384 TGCCACGGATCAGTATGCCT 61.337 55.000 14.17 0.00 34.76 4.75
1839 1855 2.040544 CCTGGATGTTCCGGCACAC 61.041 63.158 9.73 3.68 41.66 3.82
1840 1856 2.358125 TGGATGTTCCGGCACACG 60.358 61.111 9.73 0.00 40.17 4.49
1899 1915 0.182775 AACTTCCTTGAACAGCCCGT 59.817 50.000 0.00 0.00 0.00 5.28
1972 1988 0.971959 ACTTCGCCATACCGTACCCA 60.972 55.000 0.00 0.00 0.00 4.51
2056 2072 2.202690 CGTCCGTGGCTATTCGCA 60.203 61.111 0.00 0.00 41.67 5.10
2594 2610 1.153369 ATCGCCATTGACGAGGTGG 60.153 57.895 0.83 0.00 43.74 4.61
2629 2645 2.371510 GAGGATCAAGAATGGGGAGGAG 59.628 54.545 0.00 0.00 33.17 3.69
2639 2655 4.097361 GGGAGGAGTTGGGACGGC 62.097 72.222 0.00 0.00 0.00 5.68
2665 2681 0.454600 CTGCTGATGTGATGGTTGCC 59.545 55.000 0.00 0.00 0.00 4.52
2669 2685 0.889994 TGATGTGATGGTTGCCAAGC 59.110 50.000 0.00 0.00 36.95 4.01
2671 2687 1.597797 ATGTGATGGTTGCCAAGCGG 61.598 55.000 1.77 0.00 36.95 5.52
2680 2696 2.045926 GCCAAGCGGTCCTGACAT 60.046 61.111 0.00 0.00 33.28 3.06
2732 2750 4.660105 CATTTTTGCCTTTGGTGTTTGTG 58.340 39.130 0.00 0.00 0.00 3.33
2836 2860 2.785477 ACTTCGTACAGTCGTTGTTTCG 59.215 45.455 0.00 7.03 41.29 3.46
2937 4028 6.648725 AACATAATACAGACTCAAACGCTC 57.351 37.500 0.00 0.00 0.00 5.03
2955 4046 4.208460 ACGCTCATAAATACACGCATACAC 59.792 41.667 0.00 0.00 0.00 2.90
2972 4063 2.057922 ACACTCACCCCTTTGACTCAT 58.942 47.619 0.00 0.00 0.00 2.90
2987 4078 6.686484 TTGACTCATACATGCATACCCTAT 57.314 37.500 0.00 0.00 0.00 2.57
2990 4081 4.471386 ACTCATACATGCATACCCTATCCC 59.529 45.833 0.00 0.00 0.00 3.85
3001 4092 5.545723 GCATACCCTATCCCTATGAGCATAT 59.454 44.000 0.00 0.00 0.00 1.78
3002 4093 6.043706 GCATACCCTATCCCTATGAGCATATT 59.956 42.308 0.00 0.00 0.00 1.28
3013 4104 6.033341 CCTATGAGCATATTCGAGACTAAGC 58.967 44.000 0.00 0.00 0.00 3.09
3014 4105 4.244425 TGAGCATATTCGAGACTAAGCC 57.756 45.455 0.00 0.00 0.00 4.35
3021 4112 3.687572 TTCGAGACTAAGCCGACATAC 57.312 47.619 0.00 0.00 31.60 2.39
3063 4154 2.187073 CCGTAGGCACCTCGTAGTT 58.813 57.895 0.00 0.00 46.14 2.24
3069 4160 1.899814 AGGCACCTCGTAGTTGATGAA 59.100 47.619 0.00 0.00 0.00 2.57
3084 4175 4.271696 TGATGAAAACGTCTCCTCACAT 57.728 40.909 0.00 0.00 0.00 3.21
3113 4204 3.302480 CGTATCGCCGGAAATTCTGAAAG 60.302 47.826 5.05 0.00 0.00 2.62
3122 4213 7.035612 GCCGGAAATTCTGAAAGTAAATTCAT 58.964 34.615 5.05 0.00 38.55 2.57
3140 4231 3.479489 TCATGATAAATGCGAGCACCAT 58.521 40.909 0.00 0.00 0.00 3.55
3145 4236 4.338964 TGATAAATGCGAGCACCATGATTT 59.661 37.500 0.00 0.00 0.00 2.17
3149 4240 2.093890 TGCGAGCACCATGATTTGAAT 58.906 42.857 0.00 0.00 0.00 2.57
3162 4257 4.538738 TGATTTGAATCATGATGGGCTGA 58.461 39.130 9.46 0.00 40.32 4.26
3173 4268 2.090775 TGATGGGCTGAGGATACCACTA 60.091 50.000 0.00 0.00 35.52 2.74
3204 4299 2.242196 CCTCCTAACCATCCAACCACAT 59.758 50.000 0.00 0.00 0.00 3.21
3205 4300 3.282021 CTCCTAACCATCCAACCACATG 58.718 50.000 0.00 0.00 0.00 3.21
3312 4409 9.824534 AATCATTATTCGCAAAACAAAAATTCC 57.175 25.926 0.00 0.00 0.00 3.01
3313 4410 8.600449 TCATTATTCGCAAAACAAAAATTCCT 57.400 26.923 0.00 0.00 0.00 3.36
3314 4411 9.050601 TCATTATTCGCAAAACAAAAATTCCTT 57.949 25.926 0.00 0.00 0.00 3.36
3315 4412 9.662545 CATTATTCGCAAAACAAAAATTCCTTT 57.337 25.926 0.00 0.00 0.00 3.11
3357 4454 9.838339 ACAATTCTTCTTACTATATCCAGTTGG 57.162 33.333 0.00 0.00 0.00 3.77
3358 4455 8.778358 CAATTCTTCTTACTATATCCAGTTGGC 58.222 37.037 0.00 0.00 34.44 4.52
3378 4476 2.549992 GCCCCACGAATGCTATGTATCA 60.550 50.000 0.00 0.00 0.00 2.15
3379 4477 3.329386 CCCCACGAATGCTATGTATCAG 58.671 50.000 0.00 0.00 0.00 2.90
3399 4497 4.697352 TCAGCTCTTGCAATTCTTAAGGTC 59.303 41.667 0.00 0.00 42.74 3.85
3458 4556 1.133025 CGGCCAATTTAACTGGAGCAG 59.867 52.381 2.24 0.00 35.85 4.24
3504 4602 1.428912 AGAATCCAAGCTGGTTTGGGA 59.571 47.619 14.46 5.79 46.16 4.37
3523 4621 4.750952 GGAAGCTTCCACACTTAGTTTC 57.249 45.455 35.71 7.61 46.76 2.78
3524 4622 3.502595 GGAAGCTTCCACACTTAGTTTCC 59.497 47.826 35.71 8.08 46.76 3.13
3525 4623 3.141767 AGCTTCCACACTTAGTTTCCC 57.858 47.619 0.00 0.00 0.00 3.97
3527 4625 2.791655 CTTCCACACTTAGTTTCCCCC 58.208 52.381 0.00 0.00 0.00 5.40
3560 4669 4.219115 TCTCTCTCTCTCTCTCTCTCTCC 58.781 52.174 0.00 0.00 0.00 3.71
3571 4680 3.309296 TCTCTCTCTCCCTCTCTCTCTC 58.691 54.545 0.00 0.00 0.00 3.20
3572 4681 3.051803 TCTCTCTCTCCCTCTCTCTCTCT 60.052 52.174 0.00 0.00 0.00 3.10
3573 4682 3.309296 TCTCTCTCCCTCTCTCTCTCTC 58.691 54.545 0.00 0.00 0.00 3.20
3574 4683 3.051803 TCTCTCTCCCTCTCTCTCTCTCT 60.052 52.174 0.00 0.00 0.00 3.10
3575 4684 3.309296 TCTCTCCCTCTCTCTCTCTCTC 58.691 54.545 0.00 0.00 0.00 3.20
3576 4685 3.051803 TCTCTCCCTCTCTCTCTCTCTCT 60.052 52.174 0.00 0.00 0.00 3.10
3577 4686 3.309296 TCTCCCTCTCTCTCTCTCTCTC 58.691 54.545 0.00 0.00 0.00 3.20
3578 4687 3.051803 TCTCCCTCTCTCTCTCTCTCTCT 60.052 52.174 0.00 0.00 0.00 3.10
3586 4695 1.903183 TCTCTCTCTCTCTCGTCCACA 59.097 52.381 0.00 0.00 0.00 4.17
3587 4696 2.503765 TCTCTCTCTCTCTCGTCCACAT 59.496 50.000 0.00 0.00 0.00 3.21
3600 4709 3.119602 TCGTCCACATCCGTTTCTTCTAG 60.120 47.826 0.00 0.00 0.00 2.43
3610 4719 8.129211 ACATCCGTTTCTTCTAGTTTTTGAAAG 58.871 33.333 0.00 0.00 0.00 2.62
3641 4750 5.076873 CCCCTGGTGTTCTTTCTTCATTTA 58.923 41.667 0.00 0.00 0.00 1.40
3669 4778 9.758651 TCCATTTCTTTTAGCCTTTTAAGTTTC 57.241 29.630 0.00 0.00 0.00 2.78
3670 4779 9.764363 CCATTTCTTTTAGCCTTTTAAGTTTCT 57.236 29.630 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.430801 GGTGCCATGCAACATTTTATTTATTA 57.569 30.769 0.00 0.00 46.68 0.98
1 2 7.319142 GGTGCCATGCAACATTTTATTTATT 57.681 32.000 0.00 0.00 46.68 1.40
2 3 6.923928 GGTGCCATGCAACATTTTATTTAT 57.076 33.333 0.00 0.00 46.68 1.40
14 15 1.477295 CATATGTGTGGTGCCATGCAA 59.523 47.619 0.00 0.00 41.47 4.08
15 16 1.104630 CATATGTGTGGTGCCATGCA 58.895 50.000 0.00 0.00 35.60 3.96
16 17 1.105457 ACATATGTGTGGTGCCATGC 58.895 50.000 7.78 0.00 37.14 4.06
17 18 3.947196 AGTAACATATGTGTGGTGCCATG 59.053 43.478 9.63 0.00 38.92 3.66
18 19 4.199310 GAGTAACATATGTGTGGTGCCAT 58.801 43.478 9.63 0.00 38.92 4.40
19 20 3.605634 GAGTAACATATGTGTGGTGCCA 58.394 45.455 9.63 0.00 38.92 4.92
20 21 2.607635 CGAGTAACATATGTGTGGTGCC 59.392 50.000 9.63 0.00 38.92 5.01
21 22 3.259064 ACGAGTAACATATGTGTGGTGC 58.741 45.455 9.63 0.00 38.92 5.01
22 23 4.326278 GTGACGAGTAACATATGTGTGGTG 59.674 45.833 9.63 2.78 38.92 4.17
23 24 4.219944 AGTGACGAGTAACATATGTGTGGT 59.780 41.667 9.63 4.90 38.92 4.16
24 25 4.744570 AGTGACGAGTAACATATGTGTGG 58.255 43.478 9.63 1.63 38.92 4.17
25 26 8.557029 TCTATAGTGACGAGTAACATATGTGTG 58.443 37.037 9.63 0.62 38.92 3.82
26 27 8.672823 TCTATAGTGACGAGTAACATATGTGT 57.327 34.615 9.63 1.98 41.28 3.72
27 28 9.548208 CATCTATAGTGACGAGTAACATATGTG 57.452 37.037 9.63 0.00 0.00 3.21
28 29 9.286170 ACATCTATAGTGACGAGTAACATATGT 57.714 33.333 1.41 1.41 0.00 2.29
31 32 9.993454 ACTACATCTATAGTGACGAGTAACATA 57.007 33.333 0.00 0.00 34.02 2.29
32 33 8.905660 ACTACATCTATAGTGACGAGTAACAT 57.094 34.615 0.00 0.00 34.02 2.71
33 34 9.822185 TTACTACATCTATAGTGACGAGTAACA 57.178 33.333 0.00 0.00 36.09 2.41
35 36 9.822185 TGTTACTACATCTATAGTGACGAGTAA 57.178 33.333 0.00 10.43 41.99 2.24
36 37 9.993454 ATGTTACTACATCTATAGTGACGAGTA 57.007 33.333 0.00 6.20 41.07 2.59
37 38 8.905660 ATGTTACTACATCTATAGTGACGAGT 57.094 34.615 0.00 6.95 41.07 4.18
62 63 9.742144 TGGGAAGTAACTTGCATTACTAATTTA 57.258 29.630 12.05 0.00 43.17 1.40
63 64 8.520351 GTGGGAAGTAACTTGCATTACTAATTT 58.480 33.333 12.05 0.00 43.17 1.82
64 65 7.888546 AGTGGGAAGTAACTTGCATTACTAATT 59.111 33.333 12.05 0.00 43.17 1.40
65 66 7.402862 AGTGGGAAGTAACTTGCATTACTAAT 58.597 34.615 12.05 0.00 43.17 1.73
66 67 6.775708 AGTGGGAAGTAACTTGCATTACTAA 58.224 36.000 12.05 0.00 43.17 2.24
67 68 6.368779 AGTGGGAAGTAACTTGCATTACTA 57.631 37.500 12.05 0.00 43.17 1.82
68 69 5.242795 AGTGGGAAGTAACTTGCATTACT 57.757 39.130 6.86 6.86 45.36 2.24
69 70 6.038271 CCATAGTGGGAAGTAACTTGCATTAC 59.962 42.308 2.54 2.54 33.45 1.89
70 71 6.069905 TCCATAGTGGGAAGTAACTTGCATTA 60.070 38.462 0.00 0.00 38.32 1.90
71 72 4.949856 CCATAGTGGGAAGTAACTTGCATT 59.050 41.667 0.00 0.00 33.45 3.56
72 73 4.227300 TCCATAGTGGGAAGTAACTTGCAT 59.773 41.667 0.00 0.00 38.32 3.96
73 74 3.585289 TCCATAGTGGGAAGTAACTTGCA 59.415 43.478 0.00 0.00 38.32 4.08
74 75 4.216411 TCCATAGTGGGAAGTAACTTGC 57.784 45.455 0.00 0.00 38.32 4.01
75 76 7.070074 AGACTATCCATAGTGGGAAGTAACTTG 59.930 40.741 3.88 0.00 43.27 3.16
76 77 7.133483 AGACTATCCATAGTGGGAAGTAACTT 58.867 38.462 3.88 0.00 43.27 2.66
77 78 6.684538 AGACTATCCATAGTGGGAAGTAACT 58.315 40.000 3.88 0.00 43.27 2.24
78 79 6.980416 AGACTATCCATAGTGGGAAGTAAC 57.020 41.667 3.88 0.00 43.27 2.50
79 80 8.063153 TGTAAGACTATCCATAGTGGGAAGTAA 58.937 37.037 3.88 0.00 43.27 2.24
80 81 7.504911 GTGTAAGACTATCCATAGTGGGAAGTA 59.495 40.741 3.88 0.00 43.27 2.24
81 82 6.324254 GTGTAAGACTATCCATAGTGGGAAGT 59.676 42.308 3.88 0.59 43.27 3.01
82 83 6.323996 TGTGTAAGACTATCCATAGTGGGAAG 59.676 42.308 3.88 0.00 43.27 3.46
83 84 6.199376 TGTGTAAGACTATCCATAGTGGGAA 58.801 40.000 3.88 0.00 43.27 3.97
84 85 5.773091 TGTGTAAGACTATCCATAGTGGGA 58.227 41.667 3.88 0.00 43.27 4.37
85 86 6.672266 ATGTGTAAGACTATCCATAGTGGG 57.328 41.667 3.88 0.00 43.27 4.61
86 87 8.204160 TCAAATGTGTAAGACTATCCATAGTGG 58.796 37.037 3.88 0.00 43.27 4.00
87 88 9.599866 TTCAAATGTGTAAGACTATCCATAGTG 57.400 33.333 3.88 0.00 43.27 2.74
91 92 9.685276 TGATTTCAAATGTGTAAGACTATCCAT 57.315 29.630 0.00 0.00 0.00 3.41
92 93 9.685276 ATGATTTCAAATGTGTAAGACTATCCA 57.315 29.630 0.00 0.00 0.00 3.41
96 97 9.725019 AGTGATGATTTCAAATGTGTAAGACTA 57.275 29.630 0.00 0.00 35.70 2.59
97 98 8.627208 AGTGATGATTTCAAATGTGTAAGACT 57.373 30.769 0.00 0.00 35.70 3.24
124 125 8.160106 GGTCTTCCTCATGTATTTCAGGATTAT 58.840 37.037 0.00 0.00 36.26 1.28
125 126 7.127186 TGGTCTTCCTCATGTATTTCAGGATTA 59.873 37.037 0.00 0.00 36.26 1.75
126 127 6.069440 TGGTCTTCCTCATGTATTTCAGGATT 60.069 38.462 0.00 0.00 36.26 3.01
127 128 5.429762 TGGTCTTCCTCATGTATTTCAGGAT 59.570 40.000 0.00 0.00 36.26 3.24
128 129 4.782691 TGGTCTTCCTCATGTATTTCAGGA 59.217 41.667 0.00 0.00 35.51 3.86
129 130 5.102953 TGGTCTTCCTCATGTATTTCAGG 57.897 43.478 0.00 0.00 34.23 3.86
130 131 7.636150 AATTGGTCTTCCTCATGTATTTCAG 57.364 36.000 0.00 0.00 34.23 3.02
131 132 7.556275 GGTAATTGGTCTTCCTCATGTATTTCA 59.444 37.037 0.00 0.00 34.23 2.69
132 133 7.013369 GGGTAATTGGTCTTCCTCATGTATTTC 59.987 40.741 0.00 0.00 34.23 2.17
133 134 6.833933 GGGTAATTGGTCTTCCTCATGTATTT 59.166 38.462 0.00 0.00 34.23 1.40
134 135 6.160459 AGGGTAATTGGTCTTCCTCATGTATT 59.840 38.462 0.00 0.00 34.23 1.89
135 136 5.672194 AGGGTAATTGGTCTTCCTCATGTAT 59.328 40.000 0.00 0.00 34.23 2.29
136 137 5.036916 AGGGTAATTGGTCTTCCTCATGTA 58.963 41.667 0.00 0.00 34.23 2.29
137 138 3.852578 AGGGTAATTGGTCTTCCTCATGT 59.147 43.478 0.00 0.00 34.23 3.21
138 139 4.510167 AGGGTAATTGGTCTTCCTCATG 57.490 45.455 0.00 0.00 34.23 3.07
139 140 6.011981 TGTTTAGGGTAATTGGTCTTCCTCAT 60.012 38.462 0.00 0.00 34.23 2.90
140 141 5.311121 TGTTTAGGGTAATTGGTCTTCCTCA 59.689 40.000 0.00 0.00 34.23 3.86
141 142 5.812286 TGTTTAGGGTAATTGGTCTTCCTC 58.188 41.667 0.00 0.00 34.23 3.71
142 143 5.853572 TGTTTAGGGTAATTGGTCTTCCT 57.146 39.130 0.00 0.00 34.23 3.36
143 144 6.904463 TTTGTTTAGGGTAATTGGTCTTCC 57.096 37.500 0.00 0.00 0.00 3.46
144 145 7.231925 TCCTTTTGTTTAGGGTAATTGGTCTTC 59.768 37.037 0.00 0.00 33.41 2.87
145 146 7.070629 TCCTTTTGTTTAGGGTAATTGGTCTT 58.929 34.615 0.00 0.00 33.41 3.01
146 147 6.616577 TCCTTTTGTTTAGGGTAATTGGTCT 58.383 36.000 0.00 0.00 33.41 3.85
147 148 6.904463 TCCTTTTGTTTAGGGTAATTGGTC 57.096 37.500 0.00 0.00 33.41 4.02
148 149 7.014905 GTCTTCCTTTTGTTTAGGGTAATTGGT 59.985 37.037 0.00 0.00 33.41 3.67
149 150 7.014808 TGTCTTCCTTTTGTTTAGGGTAATTGG 59.985 37.037 0.00 0.00 33.41 3.16
150 151 7.947282 TGTCTTCCTTTTGTTTAGGGTAATTG 58.053 34.615 0.00 0.00 33.41 2.32
151 152 8.541899 TTGTCTTCCTTTTGTTTAGGGTAATT 57.458 30.769 0.00 0.00 33.41 1.40
152 153 8.002459 TCTTGTCTTCCTTTTGTTTAGGGTAAT 58.998 33.333 0.00 0.00 33.41 1.89
153 154 7.283807 GTCTTGTCTTCCTTTTGTTTAGGGTAA 59.716 37.037 0.00 0.00 33.41 2.85
154 155 6.769341 GTCTTGTCTTCCTTTTGTTTAGGGTA 59.231 38.462 0.00 0.00 33.41 3.69
155 156 5.593095 GTCTTGTCTTCCTTTTGTTTAGGGT 59.407 40.000 0.00 0.00 33.41 4.34
156 157 5.009710 GGTCTTGTCTTCCTTTTGTTTAGGG 59.990 44.000 0.00 0.00 33.41 3.53
157 158 5.592688 TGGTCTTGTCTTCCTTTTGTTTAGG 59.407 40.000 0.00 0.00 0.00 2.69
158 159 6.693315 TGGTCTTGTCTTCCTTTTGTTTAG 57.307 37.500 0.00 0.00 0.00 1.85
159 160 7.469537 TTTGGTCTTGTCTTCCTTTTGTTTA 57.530 32.000 0.00 0.00 0.00 2.01
160 161 5.993748 TTGGTCTTGTCTTCCTTTTGTTT 57.006 34.783 0.00 0.00 0.00 2.83
161 162 5.993748 TTTGGTCTTGTCTTCCTTTTGTT 57.006 34.783 0.00 0.00 0.00 2.83
162 163 5.993748 TTTTGGTCTTGTCTTCCTTTTGT 57.006 34.783 0.00 0.00 0.00 2.83
163 164 6.340522 ACATTTTGGTCTTGTCTTCCTTTTG 58.659 36.000 0.00 0.00 0.00 2.44
164 165 6.544928 ACATTTTGGTCTTGTCTTCCTTTT 57.455 33.333 0.00 0.00 0.00 2.27
165 166 7.839680 ATACATTTTGGTCTTGTCTTCCTTT 57.160 32.000 0.00 0.00 0.00 3.11
173 174 9.693739 TGGACAATATATACATTTTGGTCTTGT 57.306 29.630 0.00 0.00 30.04 3.16
176 177 8.796475 GCATGGACAATATATACATTTTGGTCT 58.204 33.333 0.00 0.00 30.04 3.85
177 178 8.028938 GGCATGGACAATATATACATTTTGGTC 58.971 37.037 0.00 0.00 30.04 4.02
178 179 7.508636 TGGCATGGACAATATATACATTTTGGT 59.491 33.333 0.00 0.00 30.04 3.67
179 180 7.894708 TGGCATGGACAATATATACATTTTGG 58.105 34.615 0.00 0.00 30.04 3.28
180 181 9.577110 GATGGCATGGACAATATATACATTTTG 57.423 33.333 3.81 0.00 31.56 2.44
181 182 9.311676 TGATGGCATGGACAATATATACATTTT 57.688 29.630 3.81 0.00 0.00 1.82
182 183 8.882557 TGATGGCATGGACAATATATACATTT 57.117 30.769 3.81 0.00 0.00 2.32
183 184 8.742777 GTTGATGGCATGGACAATATATACATT 58.257 33.333 3.81 0.00 0.00 2.71
184 185 7.340232 GGTTGATGGCATGGACAATATATACAT 59.660 37.037 3.81 0.00 0.00 2.29
185 186 6.658816 GGTTGATGGCATGGACAATATATACA 59.341 38.462 3.81 0.00 0.00 2.29
186 187 6.658816 TGGTTGATGGCATGGACAATATATAC 59.341 38.462 3.81 0.00 0.00 1.47
187 188 6.788218 TGGTTGATGGCATGGACAATATATA 58.212 36.000 3.81 0.00 0.00 0.86
188 189 5.643176 TGGTTGATGGCATGGACAATATAT 58.357 37.500 3.81 0.00 0.00 0.86
189 190 5.059134 TGGTTGATGGCATGGACAATATA 57.941 39.130 3.81 0.00 0.00 0.86
190 191 3.913509 TGGTTGATGGCATGGACAATAT 58.086 40.909 3.81 0.00 0.00 1.28
191 192 3.378861 TGGTTGATGGCATGGACAATA 57.621 42.857 3.81 0.00 0.00 1.90
192 193 2.234896 TGGTTGATGGCATGGACAAT 57.765 45.000 3.81 0.00 0.00 2.71
193 194 2.006805 TTGGTTGATGGCATGGACAA 57.993 45.000 3.81 0.00 0.00 3.18
194 195 2.234896 ATTGGTTGATGGCATGGACA 57.765 45.000 3.81 0.00 0.00 4.02
195 196 3.196254 AGAAATTGGTTGATGGCATGGAC 59.804 43.478 3.81 2.73 0.00 4.02
196 197 3.443052 AGAAATTGGTTGATGGCATGGA 58.557 40.909 3.81 0.00 0.00 3.41
197 198 3.899052 AGAAATTGGTTGATGGCATGG 57.101 42.857 3.81 0.00 0.00 3.66
198 199 7.549842 TCATTTAAGAAATTGGTTGATGGCATG 59.450 33.333 3.81 0.00 0.00 4.06
199 200 7.550196 GTCATTTAAGAAATTGGTTGATGGCAT 59.450 33.333 0.00 0.00 0.00 4.40
200 201 6.873076 GTCATTTAAGAAATTGGTTGATGGCA 59.127 34.615 0.00 0.00 0.00 4.92
201 202 6.873076 TGTCATTTAAGAAATTGGTTGATGGC 59.127 34.615 0.00 0.00 0.00 4.40
202 203 8.830201 TTGTCATTTAAGAAATTGGTTGATGG 57.170 30.769 0.00 0.00 0.00 3.51
203 204 8.437742 GCTTGTCATTTAAGAAATTGGTTGATG 58.562 33.333 0.00 0.00 0.00 3.07
204 205 7.329226 CGCTTGTCATTTAAGAAATTGGTTGAT 59.671 33.333 0.00 0.00 0.00 2.57
205 206 6.640499 CGCTTGTCATTTAAGAAATTGGTTGA 59.360 34.615 0.00 0.00 0.00 3.18
206 207 6.420604 ACGCTTGTCATTTAAGAAATTGGTTG 59.579 34.615 0.00 0.00 0.00 3.77
207 208 6.512297 ACGCTTGTCATTTAAGAAATTGGTT 58.488 32.000 0.00 0.00 0.00 3.67
208 209 6.084326 ACGCTTGTCATTTAAGAAATTGGT 57.916 33.333 0.00 0.00 0.00 3.67
209 210 8.687824 AATACGCTTGTCATTTAAGAAATTGG 57.312 30.769 0.00 0.00 0.00 3.16
211 212 9.503427 GCTAATACGCTTGTCATTTAAGAAATT 57.497 29.630 0.00 0.00 0.00 1.82
212 213 8.893727 AGCTAATACGCTTGTCATTTAAGAAAT 58.106 29.630 0.00 0.00 36.74 2.17
213 214 8.175069 CAGCTAATACGCTTGTCATTTAAGAAA 58.825 33.333 0.00 0.00 38.41 2.52
214 215 7.201609 CCAGCTAATACGCTTGTCATTTAAGAA 60.202 37.037 0.00 0.00 38.41 2.52
215 216 6.257849 CCAGCTAATACGCTTGTCATTTAAGA 59.742 38.462 0.00 0.00 38.41 2.10
216 217 6.037172 ACCAGCTAATACGCTTGTCATTTAAG 59.963 38.462 0.00 0.00 38.41 1.85
217 218 5.878116 ACCAGCTAATACGCTTGTCATTTAA 59.122 36.000 0.00 0.00 38.41 1.52
218 219 5.424757 ACCAGCTAATACGCTTGTCATTTA 58.575 37.500 0.00 0.00 38.41 1.40
219 220 4.261801 ACCAGCTAATACGCTTGTCATTT 58.738 39.130 0.00 0.00 38.41 2.32
220 221 3.873910 ACCAGCTAATACGCTTGTCATT 58.126 40.909 0.00 0.00 38.41 2.57
221 222 3.543680 ACCAGCTAATACGCTTGTCAT 57.456 42.857 0.00 0.00 38.41 3.06
222 223 3.193903 TGTACCAGCTAATACGCTTGTCA 59.806 43.478 0.00 0.00 38.41 3.58
223 224 3.777478 TGTACCAGCTAATACGCTTGTC 58.223 45.455 0.00 0.00 38.41 3.18
224 225 3.880047 TGTACCAGCTAATACGCTTGT 57.120 42.857 0.00 0.00 38.41 3.16
225 226 4.430007 TCTTGTACCAGCTAATACGCTTG 58.570 43.478 0.00 0.00 38.41 4.01
226 227 4.730949 TCTTGTACCAGCTAATACGCTT 57.269 40.909 0.00 0.00 38.41 4.68
227 228 4.939052 ATCTTGTACCAGCTAATACGCT 57.061 40.909 0.00 0.00 41.90 5.07
228 229 7.653767 AATTATCTTGTACCAGCTAATACGC 57.346 36.000 4.11 0.00 0.00 4.42
232 233 9.573166 TGCATTAATTATCTTGTACCAGCTAAT 57.427 29.630 0.00 0.00 0.00 1.73
233 234 8.972458 TGCATTAATTATCTTGTACCAGCTAA 57.028 30.769 0.00 0.00 0.00 3.09
234 235 8.972458 TTGCATTAATTATCTTGTACCAGCTA 57.028 30.769 0.00 0.00 0.00 3.32
235 236 7.469181 GCTTGCATTAATTATCTTGTACCAGCT 60.469 37.037 0.00 0.00 0.00 4.24
236 237 6.638468 GCTTGCATTAATTATCTTGTACCAGC 59.362 38.462 0.00 0.00 0.00 4.85
237 238 7.013655 AGGCTTGCATTAATTATCTTGTACCAG 59.986 37.037 0.00 0.00 0.00 4.00
238 239 6.833416 AGGCTTGCATTAATTATCTTGTACCA 59.167 34.615 0.00 0.00 0.00 3.25
239 240 7.277174 AGGCTTGCATTAATTATCTTGTACC 57.723 36.000 0.00 0.00 0.00 3.34
240 241 8.009974 CGTAGGCTTGCATTAATTATCTTGTAC 58.990 37.037 0.00 0.00 0.00 2.90
241 242 7.929245 TCGTAGGCTTGCATTAATTATCTTGTA 59.071 33.333 0.00 0.00 0.00 2.41
242 243 6.765989 TCGTAGGCTTGCATTAATTATCTTGT 59.234 34.615 0.00 0.00 0.00 3.16
243 244 7.041780 ACTCGTAGGCTTGCATTAATTATCTTG 60.042 37.037 0.00 0.00 0.00 3.02
244 245 6.992715 ACTCGTAGGCTTGCATTAATTATCTT 59.007 34.615 0.00 0.00 0.00 2.40
245 246 6.525629 ACTCGTAGGCTTGCATTAATTATCT 58.474 36.000 0.00 0.00 0.00 1.98
246 247 6.787085 ACTCGTAGGCTTGCATTAATTATC 57.213 37.500 0.00 0.00 0.00 1.75
247 248 6.513393 GCAACTCGTAGGCTTGCATTAATTAT 60.513 38.462 0.00 0.00 40.09 1.28
248 249 5.220777 GCAACTCGTAGGCTTGCATTAATTA 60.221 40.000 0.00 0.00 40.09 1.40
249 250 4.438744 GCAACTCGTAGGCTTGCATTAATT 60.439 41.667 0.00 0.00 40.09 1.40
250 251 3.065371 GCAACTCGTAGGCTTGCATTAAT 59.935 43.478 0.00 0.00 40.09 1.40
251 252 2.418628 GCAACTCGTAGGCTTGCATTAA 59.581 45.455 0.00 0.00 40.09 1.40
252 253 2.006888 GCAACTCGTAGGCTTGCATTA 58.993 47.619 0.00 0.00 40.09 1.90
253 254 0.804989 GCAACTCGTAGGCTTGCATT 59.195 50.000 0.00 0.00 40.09 3.56
254 255 0.036010 AGCAACTCGTAGGCTTGCAT 60.036 50.000 15.61 0.00 42.32 3.96
255 256 0.250295 AAGCAACTCGTAGGCTTGCA 60.250 50.000 15.61 0.00 45.44 4.08
256 257 0.444260 GAAGCAACTCGTAGGCTTGC 59.556 55.000 11.89 0.00 47.00 4.01
257 258 1.079503 GGAAGCAACTCGTAGGCTTG 58.920 55.000 11.89 0.00 47.00 4.01
259 260 0.533032 GAGGAAGCAACTCGTAGGCT 59.467 55.000 0.00 0.00 40.14 4.58
260 261 0.533032 AGAGGAAGCAACTCGTAGGC 59.467 55.000 0.00 0.00 39.90 3.93
261 262 1.546476 ACAGAGGAAGCAACTCGTAGG 59.454 52.381 0.00 0.00 39.90 3.18
262 263 3.305398 AACAGAGGAAGCAACTCGTAG 57.695 47.619 0.00 0.00 39.90 3.51
263 264 3.746045 AAACAGAGGAAGCAACTCGTA 57.254 42.857 0.00 0.00 39.90 3.43
264 265 2.622064 AAACAGAGGAAGCAACTCGT 57.378 45.000 0.00 0.00 39.90 4.18
265 266 3.971032 AAAAACAGAGGAAGCAACTCG 57.029 42.857 0.00 0.00 39.90 4.18
266 267 8.568794 AGTAAATAAAAACAGAGGAAGCAACTC 58.431 33.333 0.00 0.00 35.20 3.01
267 268 8.465273 AGTAAATAAAAACAGAGGAAGCAACT 57.535 30.769 0.00 0.00 0.00 3.16
268 269 7.808381 GGAGTAAATAAAAACAGAGGAAGCAAC 59.192 37.037 0.00 0.00 0.00 4.17
269 270 7.308348 CGGAGTAAATAAAAACAGAGGAAGCAA 60.308 37.037 0.00 0.00 0.00 3.91
270 271 6.148811 CGGAGTAAATAAAAACAGAGGAAGCA 59.851 38.462 0.00 0.00 0.00 3.91
271 272 6.543736 CGGAGTAAATAAAAACAGAGGAAGC 58.456 40.000 0.00 0.00 0.00 3.86
272 273 6.148811 TGCGGAGTAAATAAAAACAGAGGAAG 59.851 38.462 0.00 0.00 0.00 3.46
273 274 5.998981 TGCGGAGTAAATAAAAACAGAGGAA 59.001 36.000 0.00 0.00 0.00 3.36
274 275 5.553123 TGCGGAGTAAATAAAAACAGAGGA 58.447 37.500 0.00 0.00 0.00 3.71
275 276 5.873179 TGCGGAGTAAATAAAAACAGAGG 57.127 39.130 0.00 0.00 0.00 3.69
276 277 9.274065 GTTAATGCGGAGTAAATAAAAACAGAG 57.726 33.333 0.00 0.00 0.00 3.35
277 278 9.005777 AGTTAATGCGGAGTAAATAAAAACAGA 57.994 29.630 0.00 0.00 0.00 3.41
278 279 9.620660 AAGTTAATGCGGAGTAAATAAAAACAG 57.379 29.630 0.00 0.00 0.00 3.16
279 280 9.968870 AAAGTTAATGCGGAGTAAATAAAAACA 57.031 25.926 0.00 0.00 0.00 2.83
282 283 9.615295 GTCAAAGTTAATGCGGAGTAAATAAAA 57.385 29.630 0.00 0.00 0.00 1.52
283 284 8.784994 TGTCAAAGTTAATGCGGAGTAAATAAA 58.215 29.630 0.00 0.00 0.00 1.40
284 285 8.325421 TGTCAAAGTTAATGCGGAGTAAATAA 57.675 30.769 0.00 0.00 0.00 1.40
285 286 7.820386 TCTGTCAAAGTTAATGCGGAGTAAATA 59.180 33.333 0.00 0.00 0.00 1.40
286 287 6.653320 TCTGTCAAAGTTAATGCGGAGTAAAT 59.347 34.615 0.00 0.00 0.00 1.40
287 288 5.992829 TCTGTCAAAGTTAATGCGGAGTAAA 59.007 36.000 0.00 0.00 0.00 2.01
288 289 5.543714 TCTGTCAAAGTTAATGCGGAGTAA 58.456 37.500 0.00 0.00 0.00 2.24
289 290 5.142061 TCTGTCAAAGTTAATGCGGAGTA 57.858 39.130 0.00 0.00 0.00 2.59
290 291 4.002906 TCTGTCAAAGTTAATGCGGAGT 57.997 40.909 0.00 0.00 0.00 3.85
291 292 4.452455 ACTTCTGTCAAAGTTAATGCGGAG 59.548 41.667 0.00 0.00 36.02 4.63
292 293 4.213270 CACTTCTGTCAAAGTTAATGCGGA 59.787 41.667 0.00 0.00 37.38 5.54
293 294 4.213270 TCACTTCTGTCAAAGTTAATGCGG 59.787 41.667 0.00 0.00 37.38 5.69
294 295 5.342806 TCACTTCTGTCAAAGTTAATGCG 57.657 39.130 0.00 0.00 37.38 4.73
295 296 6.729187 AGTTCACTTCTGTCAAAGTTAATGC 58.271 36.000 0.00 0.00 37.38 3.56
384 385 7.148035 TCAATGTCGTTGGATTCATCATTGAAT 60.148 33.333 15.56 1.02 43.84 2.57
385 386 6.150809 TCAATGTCGTTGGATTCATCATTGAA 59.849 34.615 15.56 0.00 43.16 2.69
386 387 5.647225 TCAATGTCGTTGGATTCATCATTGA 59.353 36.000 14.65 14.65 43.56 2.57
387 388 5.882553 TCAATGTCGTTGGATTCATCATTG 58.117 37.500 4.95 11.89 40.71 2.82
388 389 6.704289 ATCAATGTCGTTGGATTCATCATT 57.296 33.333 4.95 0.00 38.39 2.57
389 390 6.704289 AATCAATGTCGTTGGATTCATCAT 57.296 33.333 4.95 0.00 38.39 2.45
390 391 6.072008 ACAAATCAATGTCGTTGGATTCATCA 60.072 34.615 4.95 0.00 38.39 3.07
391 392 6.324819 ACAAATCAATGTCGTTGGATTCATC 58.675 36.000 4.95 0.00 38.39 2.92
392 393 6.271488 ACAAATCAATGTCGTTGGATTCAT 57.729 33.333 4.95 0.00 38.39 2.57
393 394 5.703978 ACAAATCAATGTCGTTGGATTCA 57.296 34.783 4.95 0.00 38.39 2.57
394 395 6.380111 CAACAAATCAATGTCGTTGGATTC 57.620 37.500 4.95 0.00 38.39 2.52
399 400 4.358851 ACACCAACAAATCAATGTCGTTG 58.641 39.130 0.00 0.00 39.25 4.10
400 401 4.647424 ACACCAACAAATCAATGTCGTT 57.353 36.364 0.00 0.00 31.81 3.85
401 402 5.957842 ATACACCAACAAATCAATGTCGT 57.042 34.783 0.00 0.00 31.81 4.34
432 433 9.382275 ACTTTCAACAAGTTTGCAGAAAAATAT 57.618 25.926 11.11 0.00 35.38 1.28
433 434 8.770438 ACTTTCAACAAGTTTGCAGAAAAATA 57.230 26.923 11.11 0.00 35.38 1.40
434 435 7.671495 ACTTTCAACAAGTTTGCAGAAAAAT 57.329 28.000 11.11 3.75 35.38 1.82
435 436 7.489574 AACTTTCAACAAGTTTGCAGAAAAA 57.510 28.000 11.11 0.00 37.18 1.94
436 437 7.489574 AAACTTTCAACAAGTTTGCAGAAAA 57.510 28.000 11.06 0.00 45.58 2.29
437 438 8.770438 ATAAACTTTCAACAAGTTTGCAGAAA 57.230 26.923 18.64 10.10 46.41 2.52
438 439 9.862371 TTATAAACTTTCAACAAGTTTGCAGAA 57.138 25.926 18.64 5.01 46.41 3.02
439 440 9.296400 GTTATAAACTTTCAACAAGTTTGCAGA 57.704 29.630 18.64 3.72 46.41 4.26
440 441 8.259194 CGTTATAAACTTTCAACAAGTTTGCAG 58.741 33.333 18.64 6.04 46.41 4.41
441 442 7.755822 ACGTTATAAACTTTCAACAAGTTTGCA 59.244 29.630 18.64 4.60 46.41 4.08
442 443 8.110970 ACGTTATAAACTTTCAACAAGTTTGC 57.889 30.769 18.64 8.44 46.41 3.68
465 466 9.731519 CGTATTAGGTTTGTCTAAAGTTAAACG 57.268 33.333 0.00 0.00 34.68 3.60
466 467 9.533983 GCGTATTAGGTTTGTCTAAAGTTAAAC 57.466 33.333 0.00 0.00 33.54 2.01
467 468 9.270640 TGCGTATTAGGTTTGTCTAAAGTTAAA 57.729 29.630 0.00 0.00 33.54 1.52
468 469 8.830201 TGCGTATTAGGTTTGTCTAAAGTTAA 57.170 30.769 0.00 0.00 33.54 2.01
469 470 8.830201 TTGCGTATTAGGTTTGTCTAAAGTTA 57.170 30.769 0.00 0.00 33.54 2.24
470 471 7.658575 TCTTGCGTATTAGGTTTGTCTAAAGTT 59.341 33.333 0.00 0.00 33.54 2.66
471 472 7.156673 TCTTGCGTATTAGGTTTGTCTAAAGT 58.843 34.615 0.00 0.00 33.54 2.66
472 473 7.331193 ACTCTTGCGTATTAGGTTTGTCTAAAG 59.669 37.037 0.00 0.00 33.54 1.85
473 474 7.156673 ACTCTTGCGTATTAGGTTTGTCTAAA 58.843 34.615 0.00 0.00 33.54 1.85
474 475 6.694447 ACTCTTGCGTATTAGGTTTGTCTAA 58.306 36.000 0.00 0.00 34.23 2.10
475 476 6.276832 ACTCTTGCGTATTAGGTTTGTCTA 57.723 37.500 0.00 0.00 0.00 2.59
476 477 5.148651 ACTCTTGCGTATTAGGTTTGTCT 57.851 39.130 0.00 0.00 0.00 3.41
477 478 5.865552 TGTACTCTTGCGTATTAGGTTTGTC 59.134 40.000 0.00 0.00 0.00 3.18
478 479 5.786311 TGTACTCTTGCGTATTAGGTTTGT 58.214 37.500 0.00 0.00 0.00 2.83
479 480 6.903883 ATGTACTCTTGCGTATTAGGTTTG 57.096 37.500 0.00 0.00 0.00 2.93
480 481 9.439500 TTTTATGTACTCTTGCGTATTAGGTTT 57.561 29.630 0.00 0.00 0.00 3.27
481 482 9.439500 TTTTTATGTACTCTTGCGTATTAGGTT 57.561 29.630 0.00 0.00 0.00 3.50
482 483 9.609346 ATTTTTATGTACTCTTGCGTATTAGGT 57.391 29.630 0.00 0.00 0.00 3.08
493 494 9.950680 CCGCATATTGAATTTTTATGTACTCTT 57.049 29.630 0.00 0.00 0.00 2.85
494 495 9.337396 TCCGCATATTGAATTTTTATGTACTCT 57.663 29.630 0.00 0.00 0.00 3.24
495 496 9.944663 TTCCGCATATTGAATTTTTATGTACTC 57.055 29.630 0.00 0.00 0.00 2.59
511 512 9.927668 CCTCCATTTTTATTTATTCCGCATATT 57.072 29.630 0.00 0.00 0.00 1.28
512 513 8.531146 CCCTCCATTTTTATTTATTCCGCATAT 58.469 33.333 0.00 0.00 0.00 1.78
513 514 7.726291 TCCCTCCATTTTTATTTATTCCGCATA 59.274 33.333 0.00 0.00 0.00 3.14
514 515 6.553100 TCCCTCCATTTTTATTTATTCCGCAT 59.447 34.615 0.00 0.00 0.00 4.73
515 516 5.894393 TCCCTCCATTTTTATTTATTCCGCA 59.106 36.000 0.00 0.00 0.00 5.69
516 517 6.040504 ACTCCCTCCATTTTTATTTATTCCGC 59.959 38.462 0.00 0.00 0.00 5.54
517 518 7.582667 ACTCCCTCCATTTTTATTTATTCCG 57.417 36.000 0.00 0.00 0.00 4.30
523 524 9.588096 GGTCATATACTCCCTCCATTTTTATTT 57.412 33.333 0.00 0.00 0.00 1.40
524 525 8.960064 AGGTCATATACTCCCTCCATTTTTATT 58.040 33.333 0.00 0.00 0.00 1.40
525 526 8.386264 CAGGTCATATACTCCCTCCATTTTTAT 58.614 37.037 0.00 0.00 0.00 1.40
526 527 7.202186 CCAGGTCATATACTCCCTCCATTTTTA 60.202 40.741 0.00 0.00 0.00 1.52
527 528 6.410853 CCAGGTCATATACTCCCTCCATTTTT 60.411 42.308 0.00 0.00 0.00 1.94
528 529 5.073691 CCAGGTCATATACTCCCTCCATTTT 59.926 44.000 0.00 0.00 0.00 1.82
529 530 4.599241 CCAGGTCATATACTCCCTCCATTT 59.401 45.833 0.00 0.00 0.00 2.32
530 531 4.171234 CCAGGTCATATACTCCCTCCATT 58.829 47.826 0.00 0.00 0.00 3.16
531 532 3.796111 CCAGGTCATATACTCCCTCCAT 58.204 50.000 0.00 0.00 0.00 3.41
532 533 2.760025 GCCAGGTCATATACTCCCTCCA 60.760 54.545 0.00 0.00 0.00 3.86
533 534 1.903183 GCCAGGTCATATACTCCCTCC 59.097 57.143 0.00 0.00 0.00 4.30
534 535 2.896039 AGCCAGGTCATATACTCCCTC 58.104 52.381 0.00 0.00 0.00 4.30
535 536 3.245803 CCTAGCCAGGTCATATACTCCCT 60.246 52.174 0.00 0.00 37.15 4.20
536 537 3.100671 CCTAGCCAGGTCATATACTCCC 58.899 54.545 0.00 0.00 37.15 4.30
537 538 2.498078 GCCTAGCCAGGTCATATACTCC 59.502 54.545 0.00 0.00 44.68 3.85
538 539 3.194542 CAGCCTAGCCAGGTCATATACTC 59.805 52.174 0.00 0.00 44.68 2.59
539 540 3.169099 CAGCCTAGCCAGGTCATATACT 58.831 50.000 0.00 0.00 44.68 2.12
540 541 2.234908 CCAGCCTAGCCAGGTCATATAC 59.765 54.545 0.00 0.00 44.68 1.47
541 542 2.540383 CCAGCCTAGCCAGGTCATATA 58.460 52.381 0.00 0.00 44.68 0.86
542 543 1.356124 CCAGCCTAGCCAGGTCATAT 58.644 55.000 0.00 0.00 44.68 1.78
543 544 1.410850 GCCAGCCTAGCCAGGTCATA 61.411 60.000 0.00 0.00 44.68 2.15
544 545 2.750657 GCCAGCCTAGCCAGGTCAT 61.751 63.158 0.00 0.00 44.68 3.06
545 546 2.529930 TAGCCAGCCTAGCCAGGTCA 62.530 60.000 0.00 0.00 44.68 4.02
546 547 1.753368 CTAGCCAGCCTAGCCAGGTC 61.753 65.000 0.00 0.00 44.68 3.85
547 548 1.764054 CTAGCCAGCCTAGCCAGGT 60.764 63.158 0.00 0.00 44.68 4.00
548 549 2.515071 CCTAGCCAGCCTAGCCAGG 61.515 68.421 0.00 0.00 45.77 4.45
549 550 3.146182 CCTAGCCAGCCTAGCCAG 58.854 66.667 0.00 0.00 41.87 4.85
550 551 2.312339 TAGCCTAGCCAGCCTAGCCA 62.312 60.000 0.00 0.00 41.87 4.75
551 552 1.122019 TTAGCCTAGCCAGCCTAGCC 61.122 60.000 0.00 0.00 41.87 3.93
552 553 0.980423 ATTAGCCTAGCCAGCCTAGC 59.020 55.000 0.00 0.00 41.87 3.42
553 554 3.578716 TGTAATTAGCCTAGCCAGCCTAG 59.421 47.826 0.00 0.00 42.68 3.02
554 555 3.578716 CTGTAATTAGCCTAGCCAGCCTA 59.421 47.826 0.00 0.00 0.00 3.93
555 556 2.370189 CTGTAATTAGCCTAGCCAGCCT 59.630 50.000 0.00 0.00 0.00 4.58
556 557 2.104963 ACTGTAATTAGCCTAGCCAGCC 59.895 50.000 0.00 0.00 0.00 4.85
557 558 3.477210 ACTGTAATTAGCCTAGCCAGC 57.523 47.619 0.00 0.00 0.00 4.85
655 656 4.213906 TGACAACAAGCATGACACATGTAG 59.786 41.667 0.00 0.00 0.00 2.74
729 730 6.642950 GCTATATAGCTATAGACCGCCATTTG 59.357 42.308 24.63 1.29 45.62 2.32
730 731 6.750148 GCTATATAGCTATAGACCGCCATTT 58.250 40.000 24.63 1.23 45.62 2.32
731 732 6.334102 GCTATATAGCTATAGACCGCCATT 57.666 41.667 24.63 1.90 45.62 3.16
820 826 9.436957 CCTACTGTTATTAGATCTTTGTGTTGT 57.563 33.333 0.00 0.00 0.00 3.32
821 827 9.653287 TCCTACTGTTATTAGATCTTTGTGTTG 57.347 33.333 0.00 0.00 0.00 3.33
832 838 8.229253 TGTTAGCGAATCCTACTGTTATTAGA 57.771 34.615 0.00 0.00 0.00 2.10
916 922 0.955428 TGCATCTGGCCAAGTTCGAC 60.955 55.000 7.01 0.00 43.89 4.20
982 989 4.431131 GGCTGGCTGGGCTTGCTA 62.431 66.667 0.00 0.00 0.00 3.49
1132 1139 4.180946 CAGCGGGAGGACGACGAG 62.181 72.222 0.00 0.00 35.47 4.18
1443 1453 2.498167 AGTCAACAAGCAGCTTACCAG 58.502 47.619 7.52 0.00 0.00 4.00
1450 1460 0.316204 ATGGCAAGTCAACAAGCAGC 59.684 50.000 0.00 0.00 0.00 5.25
1451 1461 1.068055 GGATGGCAAGTCAACAAGCAG 60.068 52.381 0.00 0.00 0.00 4.24
1452 1462 0.961019 GGATGGCAAGTCAACAAGCA 59.039 50.000 0.00 0.00 0.00 3.91
1456 1466 5.327616 CATTAATGGATGGCAAGTCAACA 57.672 39.130 7.62 0.00 0.00 3.33
1486 1496 1.826054 CAAAACCCACACCGGCTGA 60.826 57.895 0.00 0.00 0.00 4.26
1488 1498 3.223589 GCAAAACCCACACCGGCT 61.224 61.111 0.00 0.00 0.00 5.52
1527 1540 4.514781 TTCTTAGACGCAGCTAACTCAA 57.485 40.909 0.00 0.00 0.00 3.02
1579 1595 0.955428 GCACGATCACTTCCAAGGCA 60.955 55.000 0.00 0.00 0.00 4.75
1583 1599 1.601903 GTTGTGCACGATCACTTCCAA 59.398 47.619 10.68 0.00 37.81 3.53
1839 1855 2.618219 CCGCTATCGTCTCCCTCCG 61.618 68.421 0.00 0.00 0.00 4.63
1840 1856 2.921797 GCCGCTATCGTCTCCCTCC 61.922 68.421 0.00 0.00 0.00 4.30
1876 1892 2.430694 GGGCTGTTCAAGGAAGTTGTTT 59.569 45.455 0.00 0.00 37.43 2.83
1899 1915 2.358125 CCGTCATGTTGCCGGACA 60.358 61.111 5.05 0.58 44.41 4.02
1933 1949 1.153168 CCGCCGATCCCAGATGTTT 60.153 57.895 0.00 0.00 0.00 2.83
1961 1977 2.697229 GGAAGTAGCTTGGGTACGGTAT 59.303 50.000 0.00 0.00 40.83 2.73
1963 1979 0.900421 GGAAGTAGCTTGGGTACGGT 59.100 55.000 0.00 0.00 40.83 4.83
1972 1988 1.823610 GACGTAGGGTGGAAGTAGCTT 59.176 52.381 0.00 0.00 0.00 3.74
2483 2499 0.344790 ATCACCTCCTCCCTCATGGT 59.655 55.000 0.00 0.00 34.77 3.55
2594 2610 1.059006 ATCCTCCTGATCCTGGCCAC 61.059 60.000 0.00 0.00 0.00 5.01
2629 2645 4.043200 GCAGCAAGCCGTCCCAAC 62.043 66.667 0.00 0.00 37.23 3.77
2639 2655 1.095600 ATCACATCAGCAGCAGCAAG 58.904 50.000 3.17 0.00 45.49 4.01
2665 2681 1.009829 GCTAATGTCAGGACCGCTTG 58.990 55.000 0.00 0.00 0.00 4.01
2669 2685 8.088981 AGTAATAATTAGCTAATGTCAGGACCG 58.911 37.037 19.53 0.00 0.00 4.79
2671 2687 9.765795 ACAGTAATAATTAGCTAATGTCAGGAC 57.234 33.333 19.53 12.41 0.00 3.85
2719 2737 5.167845 ACAAAACTAGCACAAACACCAAAG 58.832 37.500 0.00 0.00 0.00 2.77
2720 2738 5.140747 ACAAAACTAGCACAAACACCAAA 57.859 34.783 0.00 0.00 0.00 3.28
2732 2750 4.205323 ACGTAGCAACAACAAAACTAGC 57.795 40.909 0.00 0.00 0.00 3.42
2910 4001 8.995220 AGCGTTTGAGTCTGTATTATGTTAAAA 58.005 29.630 0.00 0.00 0.00 1.52
2911 4002 8.542497 AGCGTTTGAGTCTGTATTATGTTAAA 57.458 30.769 0.00 0.00 0.00 1.52
2912 4003 7.815549 TGAGCGTTTGAGTCTGTATTATGTTAA 59.184 33.333 0.00 0.00 0.00 2.01
2913 4004 7.317390 TGAGCGTTTGAGTCTGTATTATGTTA 58.683 34.615 0.00 0.00 0.00 2.41
2914 4005 6.163476 TGAGCGTTTGAGTCTGTATTATGTT 58.837 36.000 0.00 0.00 0.00 2.71
2916 4007 6.834959 ATGAGCGTTTGAGTCTGTATTATG 57.165 37.500 0.00 0.00 0.00 1.90
2917 4008 8.942338 TTTATGAGCGTTTGAGTCTGTATTAT 57.058 30.769 0.00 0.00 0.00 1.28
2918 4009 8.942338 ATTTATGAGCGTTTGAGTCTGTATTA 57.058 30.769 0.00 0.00 0.00 0.98
2919 4010 7.849804 ATTTATGAGCGTTTGAGTCTGTATT 57.150 32.000 0.00 0.00 0.00 1.89
2920 4011 7.979537 TGTATTTATGAGCGTTTGAGTCTGTAT 59.020 33.333 0.00 0.00 0.00 2.29
2937 4028 5.050363 GGGTGAGTGTATGCGTGTATTTATG 60.050 44.000 0.00 0.00 0.00 1.90
2955 4046 3.981071 TGTATGAGTCAAAGGGGTGAG 57.019 47.619 0.00 0.00 0.00 3.51
2972 4063 5.849140 TCATAGGGATAGGGTATGCATGTA 58.151 41.667 10.16 0.00 0.00 2.29
2987 4078 4.667573 AGTCTCGAATATGCTCATAGGGA 58.332 43.478 0.00 0.00 0.00 4.20
2990 4081 6.033341 GGCTTAGTCTCGAATATGCTCATAG 58.967 44.000 10.60 0.00 34.07 2.23
3001 4092 2.357009 GGTATGTCGGCTTAGTCTCGAA 59.643 50.000 0.00 0.00 34.62 3.71
3002 4093 1.945394 GGTATGTCGGCTTAGTCTCGA 59.055 52.381 0.00 0.00 0.00 4.04
3013 4104 7.650504 TCGTAAAATCTTAAGATGGTATGTCGG 59.349 37.037 18.61 3.43 34.49 4.79
3014 4105 8.570096 TCGTAAAATCTTAAGATGGTATGTCG 57.430 34.615 18.61 15.25 34.49 4.35
3021 4112 7.464178 CGGTGACTTCGTAAAATCTTAAGATGG 60.464 40.741 18.61 6.57 34.49 3.51
3051 4142 3.423123 CGTTTTCATCAACTACGAGGTGC 60.423 47.826 0.00 0.00 31.59 5.01
3053 4144 3.985925 GACGTTTTCATCAACTACGAGGT 59.014 43.478 0.00 0.00 36.21 3.85
3063 4154 3.744238 TGTGAGGAGACGTTTTCATCA 57.256 42.857 12.41 12.41 33.46 3.07
3069 4160 2.800544 CGTTCAATGTGAGGAGACGTTT 59.199 45.455 0.00 0.00 0.00 3.60
3106 4197 9.720667 CGCATTTATCATGAATTTACTTTCAGA 57.279 29.630 0.00 0.00 38.90 3.27
3113 4204 6.360681 GGTGCTCGCATTTATCATGAATTTAC 59.639 38.462 0.00 0.00 0.00 2.01
3122 4213 2.916640 TCATGGTGCTCGCATTTATCA 58.083 42.857 0.00 0.00 0.00 2.15
3145 4236 2.129363 TCCTCAGCCCATCATGATTCA 58.871 47.619 5.16 0.00 0.00 2.57
3149 4240 1.980765 GGTATCCTCAGCCCATCATGA 59.019 52.381 0.00 0.00 0.00 3.07
3151 4242 1.701847 GTGGTATCCTCAGCCCATCAT 59.298 52.381 0.00 0.00 0.00 2.45
3162 4257 5.782925 AGGAGTGAAGAATAGTGGTATCCT 58.217 41.667 0.00 0.00 0.00 3.24
3173 4268 4.410555 GGATGGTTAGGAGGAGTGAAGAAT 59.589 45.833 0.00 0.00 0.00 2.40
3233 4329 4.340666 TGTTCTCCTTAAAAACATGCTGCA 59.659 37.500 4.13 4.13 0.00 4.41
3319 4416 9.807921 AGTAAGAAGAATTGTTATTTCCCTTCA 57.192 29.630 0.17 0.00 36.18 3.02
3339 4436 3.908103 GGGGCCAACTGGATATAGTAAGA 59.092 47.826 4.39 0.00 37.39 2.10
3348 4445 1.863155 ATTCGTGGGGCCAACTGGAT 61.863 55.000 9.90 0.00 37.39 3.41
3357 4454 2.076863 GATACATAGCATTCGTGGGGC 58.923 52.381 0.00 0.00 0.00 5.80
3358 4455 3.329386 CTGATACATAGCATTCGTGGGG 58.671 50.000 0.00 0.00 0.00 4.96
3378 4476 3.686726 CGACCTTAAGAATTGCAAGAGCT 59.313 43.478 4.94 0.00 42.74 4.09
3379 4477 3.729163 GCGACCTTAAGAATTGCAAGAGC 60.729 47.826 4.94 0.00 42.57 4.09
3434 4532 1.353022 TCCAGTTAAATTGGCCGACCT 59.647 47.619 0.00 0.00 35.62 3.85
3435 4533 1.743394 CTCCAGTTAAATTGGCCGACC 59.257 52.381 0.00 0.00 35.62 4.79
3436 4534 1.132453 GCTCCAGTTAAATTGGCCGAC 59.868 52.381 0.00 0.00 35.62 4.79
3437 4535 1.271652 TGCTCCAGTTAAATTGGCCGA 60.272 47.619 0.00 0.00 35.62 5.54
3438 4536 1.133025 CTGCTCCAGTTAAATTGGCCG 59.867 52.381 0.00 0.00 35.62 6.13
3439 4537 1.134995 GCTGCTCCAGTTAAATTGGCC 60.135 52.381 0.00 0.00 35.62 5.36
3440 4538 1.468054 CGCTGCTCCAGTTAAATTGGC 60.468 52.381 0.00 0.00 35.62 4.52
3441 4539 1.133025 CCGCTGCTCCAGTTAAATTGG 59.867 52.381 0.00 1.63 37.04 3.16
3442 4540 1.133025 CCCGCTGCTCCAGTTAAATTG 59.867 52.381 0.00 0.00 33.43 2.32
3458 4556 4.593864 CCTTCCGCTAGCTCCCGC 62.594 72.222 13.93 0.00 0.00 6.13
3504 4602 3.487372 GGGAAACTAAGTGTGGAAGCTT 58.513 45.455 0.00 0.00 0.00 3.74
3524 4622 0.478507 GAGAGAGAGAGAGGAGGGGG 59.521 65.000 0.00 0.00 0.00 5.40
3525 4623 1.421646 GAGAGAGAGAGAGAGGAGGGG 59.578 61.905 0.00 0.00 0.00 4.79
3527 4625 3.312890 AGAGAGAGAGAGAGAGAGGAGG 58.687 54.545 0.00 0.00 0.00 4.30
3528 4626 4.222336 AGAGAGAGAGAGAGAGAGAGGAG 58.778 52.174 0.00 0.00 0.00 3.69
3529 4627 4.078922 AGAGAGAGAGAGAGAGAGAGAGGA 60.079 50.000 0.00 0.00 0.00 3.71
3560 4669 2.695666 ACGAGAGAGAGAGAGAGAGAGG 59.304 54.545 0.00 0.00 0.00 3.69
3571 4680 0.660488 CGGATGTGGACGAGAGAGAG 59.340 60.000 0.00 0.00 0.00 3.20
3572 4681 0.035343 ACGGATGTGGACGAGAGAGA 60.035 55.000 0.00 0.00 0.00 3.10
3573 4682 0.811915 AACGGATGTGGACGAGAGAG 59.188 55.000 0.00 0.00 0.00 3.20
3574 4683 1.201647 GAAACGGATGTGGACGAGAGA 59.798 52.381 0.00 0.00 0.00 3.10
3575 4684 1.202582 AGAAACGGATGTGGACGAGAG 59.797 52.381 0.00 0.00 0.00 3.20
3576 4685 1.254026 AGAAACGGATGTGGACGAGA 58.746 50.000 0.00 0.00 0.00 4.04
3577 4686 1.993370 GAAGAAACGGATGTGGACGAG 59.007 52.381 0.00 0.00 0.00 4.18
3578 4687 1.616865 AGAAGAAACGGATGTGGACGA 59.383 47.619 0.00 0.00 0.00 4.20
3586 4695 7.284716 ACCTTTCAAAAACTAGAAGAAACGGAT 59.715 33.333 0.00 0.00 0.00 4.18
3587 4696 6.600427 ACCTTTCAAAAACTAGAAGAAACGGA 59.400 34.615 0.00 0.00 0.00 4.69
3600 4709 4.638421 CAGGGGGAAAAACCTTTCAAAAAC 59.362 41.667 0.50 0.00 42.44 2.43
3610 4719 1.045407 GAACACCAGGGGGAAAAACC 58.955 55.000 0.00 0.00 38.05 3.27
3617 4726 1.144913 TGAAGAAAGAACACCAGGGGG 59.855 52.381 0.00 0.00 41.29 5.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.