Multiple sequence alignment - TraesCS2B01G471000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G471000 chr2B 100.000 2626 0 0 1 2626 667426773 667424148 0.000000e+00 4850.0
1 TraesCS2B01G471000 chr2B 83.045 1386 155 37 382 1754 668013044 668011726 0.000000e+00 1184.0
2 TraesCS2B01G471000 chr2B 85.714 378 51 3 939 1315 668023099 668022724 1.890000e-106 396.0
3 TraesCS2B01G471000 chr2B 100.000 28 0 0 2173 2200 752918411 752918384 5.000000e-03 52.8
4 TraesCS2B01G471000 chr2D 87.582 1369 85 39 382 1741 558906125 558904833 0.000000e+00 1507.0
5 TraesCS2B01G471000 chr2D 88.339 849 77 14 1783 2626 558901815 558900984 0.000000e+00 1000.0
6 TraesCS2B01G471000 chr2D 75.309 810 123 42 939 1730 558957104 558956354 1.520000e-82 316.0
7 TraesCS2B01G471000 chr2D 86.364 66 7 2 834 898 558957187 558957123 1.300000e-08 71.3
8 TraesCS2B01G471000 chr2A 87.348 1233 90 34 609 1820 699536463 699535276 0.000000e+00 1352.0
9 TraesCS2B01G471000 chr2A 88.317 796 69 16 1833 2626 699535207 699534434 0.000000e+00 933.0
10 TraesCS2B01G471000 chr2A 89.017 692 42 11 703 1379 699556055 699555383 0.000000e+00 826.0
11 TraesCS2B01G471000 chr2A 81.029 311 28 13 1458 1754 699555347 699555054 4.400000e-53 219.0
12 TraesCS2B01G471000 chr2A 94.595 37 2 0 2164 2200 480651018 480651054 1.020000e-04 58.4
13 TraesCS2B01G471000 chr7B 77.193 285 46 11 2330 2598 228006303 228006022 5.860000e-32 148.0
14 TraesCS2B01G471000 chr7B 96.970 33 1 0 2168 2200 602558889 602558857 3.650000e-04 56.5
15 TraesCS2B01G471000 chr7D 84.483 58 7 1 2170 2225 371253760 371253817 3.650000e-04 56.5
16 TraesCS2B01G471000 chr5B 100.000 30 0 0 2169 2198 225547809 225547780 3.650000e-04 56.5
17 TraesCS2B01G471000 chr7A 96.875 32 1 0 2169 2200 156570678 156570647 1.000000e-03 54.7
18 TraesCS2B01G471000 chr7A 96.875 32 1 0 2169 2200 607523928 607523897 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G471000 chr2B 667424148 667426773 2625 True 4850.0 4850 100.0000 1 2626 1 chr2B.!!$R1 2625
1 TraesCS2B01G471000 chr2B 668011726 668013044 1318 True 1184.0 1184 83.0450 382 1754 1 chr2B.!!$R2 1372
2 TraesCS2B01G471000 chr2D 558900984 558906125 5141 True 1253.5 1507 87.9605 382 2626 2 chr2D.!!$R1 2244
3 TraesCS2B01G471000 chr2A 699534434 699536463 2029 True 1142.5 1352 87.8325 609 2626 2 chr2A.!!$R1 2017
4 TraesCS2B01G471000 chr2A 699555054 699556055 1001 True 522.5 826 85.0230 703 1754 2 chr2A.!!$R2 1051

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
257 258 0.031515 TCCCTGGGGTATGATCGTGT 60.032 55.0 14.00 0.0 36.47 4.49 F
258 259 0.393077 CCCTGGGGTATGATCGTGTC 59.607 60.0 4.27 0.0 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1538 1573 0.179089 CCATGACCGAAGCTCCTCAG 60.179 60.000 0.0 0.0 0.00 3.35 R
2257 5372 1.135333 GTGGACGCTTTTTGGGTTTGA 59.865 47.619 0.0 0.0 42.14 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.170985 CGAGACAAACCAAGCGCG 59.829 61.111 0.00 0.00 0.00 6.86
18 19 2.307309 CGAGACAAACCAAGCGCGA 61.307 57.895 12.10 0.00 0.00 5.87
19 20 1.827315 CGAGACAAACCAAGCGCGAA 61.827 55.000 12.10 0.00 0.00 4.70
20 21 0.110644 GAGACAAACCAAGCGCGAAG 60.111 55.000 12.10 0.00 0.00 3.79
34 35 2.093216 CGAAGCAAGACATCCAGGC 58.907 57.895 0.00 0.00 0.00 4.85
35 36 0.392193 CGAAGCAAGACATCCAGGCT 60.392 55.000 0.00 0.00 36.92 4.58
36 37 1.093159 GAAGCAAGACATCCAGGCTG 58.907 55.000 7.75 7.75 34.00 4.85
37 38 0.323178 AAGCAAGACATCCAGGCTGG 60.323 55.000 28.01 28.01 34.00 4.85
38 39 1.751927 GCAAGACATCCAGGCTGGG 60.752 63.158 32.23 19.93 38.32 4.45
39 40 1.751927 CAAGACATCCAGGCTGGGC 60.752 63.158 32.23 18.79 38.32 5.36
40 41 1.927527 AAGACATCCAGGCTGGGCT 60.928 57.895 32.23 20.57 38.32 5.19
41 42 1.504275 AAGACATCCAGGCTGGGCTT 61.504 55.000 32.23 24.41 38.32 4.35
42 43 1.452833 GACATCCAGGCTGGGCTTC 60.453 63.158 32.23 20.77 38.32 3.86
43 44 2.515523 CATCCAGGCTGGGCTTCG 60.516 66.667 32.23 13.08 38.32 3.79
44 45 3.801997 ATCCAGGCTGGGCTTCGG 61.802 66.667 32.23 6.04 38.32 4.30
61 62 4.103103 GCTCGGCCCGCTTGAAAC 62.103 66.667 0.00 0.00 0.00 2.78
62 63 3.431725 CTCGGCCCGCTTGAAACC 61.432 66.667 0.00 0.00 0.00 3.27
65 66 3.373565 GGCCCGCTTGAAACCCAG 61.374 66.667 0.00 0.00 0.00 4.45
66 67 2.282180 GCCCGCTTGAAACCCAGA 60.282 61.111 0.00 0.00 0.00 3.86
67 68 1.901464 GCCCGCTTGAAACCCAGAA 60.901 57.895 0.00 0.00 0.00 3.02
68 69 1.460273 GCCCGCTTGAAACCCAGAAA 61.460 55.000 0.00 0.00 0.00 2.52
69 70 1.036707 CCCGCTTGAAACCCAGAAAA 58.963 50.000 0.00 0.00 0.00 2.29
70 71 1.000274 CCCGCTTGAAACCCAGAAAAG 60.000 52.381 0.00 0.00 0.00 2.27
71 72 1.602920 CCGCTTGAAACCCAGAAAAGC 60.603 52.381 0.00 0.00 39.84 3.51
72 73 1.066908 CGCTTGAAACCCAGAAAAGCA 59.933 47.619 6.52 0.00 42.63 3.91
73 74 2.473816 GCTTGAAACCCAGAAAAGCAC 58.526 47.619 0.00 0.00 42.19 4.40
74 75 2.159114 GCTTGAAACCCAGAAAAGCACA 60.159 45.455 0.00 0.00 42.19 4.57
75 76 3.678529 GCTTGAAACCCAGAAAAGCACAA 60.679 43.478 0.00 0.00 42.19 3.33
76 77 4.502962 CTTGAAACCCAGAAAAGCACAAA 58.497 39.130 0.00 0.00 0.00 2.83
77 78 4.751767 TGAAACCCAGAAAAGCACAAAT 57.248 36.364 0.00 0.00 0.00 2.32
78 79 5.096443 TGAAACCCAGAAAAGCACAAATT 57.904 34.783 0.00 0.00 0.00 1.82
79 80 4.874966 TGAAACCCAGAAAAGCACAAATTG 59.125 37.500 0.00 0.00 0.00 2.32
91 92 3.354089 CACAAATTGCTGGAACTCGTT 57.646 42.857 0.00 0.00 0.00 3.85
92 93 3.705604 CACAAATTGCTGGAACTCGTTT 58.294 40.909 0.00 0.00 0.00 3.60
93 94 4.111916 CACAAATTGCTGGAACTCGTTTT 58.888 39.130 0.00 0.00 0.00 2.43
94 95 4.566360 CACAAATTGCTGGAACTCGTTTTT 59.434 37.500 0.00 0.00 0.00 1.94
95 96 5.746245 CACAAATTGCTGGAACTCGTTTTTA 59.254 36.000 0.00 0.00 0.00 1.52
96 97 5.977129 ACAAATTGCTGGAACTCGTTTTTAG 59.023 36.000 0.00 0.00 0.00 1.85
97 98 5.767816 AATTGCTGGAACTCGTTTTTAGT 57.232 34.783 0.00 0.00 0.00 2.24
98 99 5.767816 ATTGCTGGAACTCGTTTTTAGTT 57.232 34.783 0.00 0.00 39.84 2.24
99 100 5.570234 TTGCTGGAACTCGTTTTTAGTTT 57.430 34.783 0.00 0.00 37.31 2.66
100 101 6.680874 TTGCTGGAACTCGTTTTTAGTTTA 57.319 33.333 0.00 0.00 37.31 2.01
101 102 6.680874 TGCTGGAACTCGTTTTTAGTTTAA 57.319 33.333 0.00 0.00 37.31 1.52
102 103 7.086230 TGCTGGAACTCGTTTTTAGTTTAAA 57.914 32.000 0.00 0.00 37.31 1.52
103 104 7.536855 TGCTGGAACTCGTTTTTAGTTTAAAA 58.463 30.769 0.00 0.00 37.31 1.52
104 105 7.485595 TGCTGGAACTCGTTTTTAGTTTAAAAC 59.514 33.333 0.00 0.00 42.04 2.43
105 106 7.485595 GCTGGAACTCGTTTTTAGTTTAAAACA 59.514 33.333 11.20 0.73 44.40 2.83
106 107 9.344309 CTGGAACTCGTTTTTAGTTTAAAACAA 57.656 29.630 11.20 0.00 44.40 2.83
107 108 9.857957 TGGAACTCGTTTTTAGTTTAAAACAAT 57.142 25.926 11.20 0.00 44.40 2.71
125 126 8.761575 AAAACAATAATGTAGGTTTGCATCAG 57.238 30.769 0.00 0.00 39.40 2.90
126 127 7.701539 AACAATAATGTAGGTTTGCATCAGA 57.298 32.000 0.00 0.00 39.40 3.27
127 128 7.701539 ACAATAATGTAGGTTTGCATCAGAA 57.298 32.000 0.00 0.00 38.24 3.02
128 129 8.121305 ACAATAATGTAGGTTTGCATCAGAAA 57.879 30.769 0.00 0.00 38.24 2.52
129 130 8.584157 ACAATAATGTAGGTTTGCATCAGAAAA 58.416 29.630 0.00 0.00 38.24 2.29
130 131 9.590451 CAATAATGTAGGTTTGCATCAGAAAAT 57.410 29.630 0.00 0.00 0.00 1.82
131 132 9.590451 AATAATGTAGGTTTGCATCAGAAAATG 57.410 29.630 0.00 0.00 0.00 2.32
132 133 6.839124 ATGTAGGTTTGCATCAGAAAATGA 57.161 33.333 0.00 0.00 43.70 2.57
133 134 6.647334 TGTAGGTTTGCATCAGAAAATGAA 57.353 33.333 0.00 0.00 42.53 2.57
134 135 7.230849 TGTAGGTTTGCATCAGAAAATGAAT 57.769 32.000 0.00 0.00 42.53 2.57
135 136 8.347004 TGTAGGTTTGCATCAGAAAATGAATA 57.653 30.769 0.00 0.00 42.53 1.75
136 137 8.801299 TGTAGGTTTGCATCAGAAAATGAATAA 58.199 29.630 0.00 0.00 42.53 1.40
137 138 9.638239 GTAGGTTTGCATCAGAAAATGAATAAA 57.362 29.630 0.00 0.00 42.53 1.40
139 140 9.729281 AGGTTTGCATCAGAAAATGAATAAATT 57.271 25.926 0.00 0.00 42.53 1.82
179 180 5.356882 TTTTGTCGTTTCAATCTAGGCTG 57.643 39.130 0.00 0.00 0.00 4.85
180 181 2.972625 TGTCGTTTCAATCTAGGCTGG 58.027 47.619 0.00 0.00 0.00 4.85
181 182 2.301870 TGTCGTTTCAATCTAGGCTGGT 59.698 45.455 0.00 0.00 0.00 4.00
182 183 3.244422 TGTCGTTTCAATCTAGGCTGGTT 60.244 43.478 0.00 0.00 0.00 3.67
183 184 3.371285 GTCGTTTCAATCTAGGCTGGTTC 59.629 47.826 0.00 0.00 0.00 3.62
184 185 2.348666 CGTTTCAATCTAGGCTGGTTCG 59.651 50.000 0.00 0.00 0.00 3.95
185 186 3.335579 GTTTCAATCTAGGCTGGTTCGT 58.664 45.455 0.00 0.00 0.00 3.85
186 187 2.672961 TCAATCTAGGCTGGTTCGTG 57.327 50.000 0.00 0.00 0.00 4.35
187 188 1.009829 CAATCTAGGCTGGTTCGTGC 58.990 55.000 0.00 0.00 0.00 5.34
188 189 0.905357 AATCTAGGCTGGTTCGTGCT 59.095 50.000 0.00 0.00 0.00 4.40
189 190 0.461961 ATCTAGGCTGGTTCGTGCTC 59.538 55.000 0.00 0.00 0.00 4.26
190 191 1.517257 CTAGGCTGGTTCGTGCTCG 60.517 63.158 0.81 0.81 38.55 5.03
191 192 1.934220 CTAGGCTGGTTCGTGCTCGA 61.934 60.000 6.80 6.80 44.66 4.04
192 193 1.934220 TAGGCTGGTTCGTGCTCGAG 61.934 60.000 8.45 8.45 46.81 4.04
193 194 3.482783 GCTGGTTCGTGCTCGAGC 61.483 66.667 30.42 30.42 46.81 5.03
194 195 2.259818 CTGGTTCGTGCTCGAGCT 59.740 61.111 35.27 0.00 46.81 4.09
195 196 1.373497 CTGGTTCGTGCTCGAGCTT 60.373 57.895 35.27 0.00 46.81 3.74
196 197 1.621301 CTGGTTCGTGCTCGAGCTTG 61.621 60.000 35.27 26.72 46.81 4.01
197 198 2.383527 GGTTCGTGCTCGAGCTTGG 61.384 63.158 35.27 23.87 46.81 3.61
198 199 1.664965 GTTCGTGCTCGAGCTTGGT 60.665 57.895 35.27 0.00 46.81 3.67
199 200 0.388134 GTTCGTGCTCGAGCTTGGTA 60.388 55.000 35.27 14.66 46.81 3.25
200 201 0.530744 TTCGTGCTCGAGCTTGGTAT 59.469 50.000 35.27 0.00 46.81 2.73
201 202 0.179137 TCGTGCTCGAGCTTGGTATG 60.179 55.000 35.27 20.98 41.35 2.39
202 203 1.756375 CGTGCTCGAGCTTGGTATGC 61.756 60.000 35.27 9.75 42.66 3.14
203 204 1.153369 TGCTCGAGCTTGGTATGCC 60.153 57.895 35.27 5.71 42.66 4.40
204 205 1.144936 GCTCGAGCTTGGTATGCCT 59.855 57.895 29.88 0.00 38.21 4.75
205 206 0.389391 GCTCGAGCTTGGTATGCCTA 59.611 55.000 29.88 0.00 38.21 3.93
206 207 1.604185 GCTCGAGCTTGGTATGCCTAG 60.604 57.143 29.88 6.92 40.00 3.02
211 212 3.595691 CTTGGTATGCCTAGCCGAG 57.404 57.895 0.16 0.00 31.38 4.63
212 213 0.753262 CTTGGTATGCCTAGCCGAGT 59.247 55.000 0.16 0.00 31.38 4.18
213 214 1.139058 CTTGGTATGCCTAGCCGAGTT 59.861 52.381 0.16 0.00 31.38 3.01
214 215 1.200519 TGGTATGCCTAGCCGAGTTT 58.799 50.000 0.16 0.00 35.27 2.66
215 216 1.557832 TGGTATGCCTAGCCGAGTTTT 59.442 47.619 0.16 0.00 35.27 2.43
216 217 1.940613 GGTATGCCTAGCCGAGTTTTG 59.059 52.381 0.00 0.00 0.00 2.44
217 218 2.629051 GTATGCCTAGCCGAGTTTTGT 58.371 47.619 0.00 0.00 0.00 2.83
218 219 2.200373 ATGCCTAGCCGAGTTTTGTT 57.800 45.000 0.00 0.00 0.00 2.83
219 220 2.843401 TGCCTAGCCGAGTTTTGTTA 57.157 45.000 0.00 0.00 0.00 2.41
220 221 2.419667 TGCCTAGCCGAGTTTTGTTAC 58.580 47.619 0.00 0.00 0.00 2.50
221 222 2.224329 TGCCTAGCCGAGTTTTGTTACA 60.224 45.455 0.00 0.00 0.00 2.41
222 223 3.007635 GCCTAGCCGAGTTTTGTTACAT 58.992 45.455 0.00 0.00 0.00 2.29
223 224 3.063588 GCCTAGCCGAGTTTTGTTACATC 59.936 47.826 0.00 0.00 0.00 3.06
224 225 3.621715 CCTAGCCGAGTTTTGTTACATCC 59.378 47.826 0.00 0.00 0.00 3.51
225 226 3.134574 AGCCGAGTTTTGTTACATCCA 57.865 42.857 0.00 0.00 0.00 3.41
226 227 3.074412 AGCCGAGTTTTGTTACATCCAG 58.926 45.455 0.00 0.00 0.00 3.86
227 228 2.414161 GCCGAGTTTTGTTACATCCAGC 60.414 50.000 0.00 0.00 0.00 4.85
228 229 2.161609 CCGAGTTTTGTTACATCCAGCC 59.838 50.000 0.00 0.00 0.00 4.85
229 230 2.161609 CGAGTTTTGTTACATCCAGCCC 59.838 50.000 0.00 0.00 0.00 5.19
230 231 3.153919 GAGTTTTGTTACATCCAGCCCA 58.846 45.455 0.00 0.00 0.00 5.36
231 232 3.571590 AGTTTTGTTACATCCAGCCCAA 58.428 40.909 0.00 0.00 0.00 4.12
232 233 3.964031 AGTTTTGTTACATCCAGCCCAAA 59.036 39.130 0.00 0.00 0.00 3.28
233 234 4.592778 AGTTTTGTTACATCCAGCCCAAAT 59.407 37.500 0.00 0.00 0.00 2.32
234 235 4.799564 TTTGTTACATCCAGCCCAAATC 57.200 40.909 0.00 0.00 0.00 2.17
235 236 2.733956 TGTTACATCCAGCCCAAATCC 58.266 47.619 0.00 0.00 0.00 3.01
236 237 2.042297 TGTTACATCCAGCCCAAATCCA 59.958 45.455 0.00 0.00 0.00 3.41
237 238 2.427095 GTTACATCCAGCCCAAATCCAC 59.573 50.000 0.00 0.00 0.00 4.02
238 239 0.706433 ACATCCAGCCCAAATCCACT 59.294 50.000 0.00 0.00 0.00 4.00
239 240 1.341383 ACATCCAGCCCAAATCCACTC 60.341 52.381 0.00 0.00 0.00 3.51
240 241 0.259938 ATCCAGCCCAAATCCACTCC 59.740 55.000 0.00 0.00 0.00 3.85
241 242 1.380380 CCAGCCCAAATCCACTCCC 60.380 63.158 0.00 0.00 0.00 4.30
242 243 1.693640 CAGCCCAAATCCACTCCCT 59.306 57.895 0.00 0.00 0.00 4.20
243 244 0.682209 CAGCCCAAATCCACTCCCTG 60.682 60.000 0.00 0.00 0.00 4.45
244 245 1.380380 GCCCAAATCCACTCCCTGG 60.380 63.158 0.00 0.00 42.29 4.45
245 246 1.307647 CCCAAATCCACTCCCTGGG 59.692 63.158 6.33 6.33 41.06 4.45
246 247 1.307647 CCAAATCCACTCCCTGGGG 59.692 63.158 14.00 6.27 41.06 4.96
247 248 1.509548 CCAAATCCACTCCCTGGGGT 61.510 60.000 14.00 6.98 41.02 4.95
248 249 1.295020 CAAATCCACTCCCTGGGGTA 58.705 55.000 14.00 0.00 41.02 3.69
249 250 1.852965 CAAATCCACTCCCTGGGGTAT 59.147 52.381 14.00 0.00 41.02 2.73
250 251 1.522900 AATCCACTCCCTGGGGTATG 58.477 55.000 14.00 8.74 41.02 2.39
251 252 0.647738 ATCCACTCCCTGGGGTATGA 59.352 55.000 14.00 9.88 41.02 2.15
252 253 0.647738 TCCACTCCCTGGGGTATGAT 59.352 55.000 14.00 0.00 41.02 2.45
253 254 1.059913 CCACTCCCTGGGGTATGATC 58.940 60.000 14.00 0.00 36.18 2.92
254 255 0.681733 CACTCCCTGGGGTATGATCG 59.318 60.000 14.00 0.00 36.47 3.69
255 256 0.264955 ACTCCCTGGGGTATGATCGT 59.735 55.000 14.00 0.00 36.47 3.73
256 257 0.681733 CTCCCTGGGGTATGATCGTG 59.318 60.000 14.00 0.00 36.47 4.35
257 258 0.031515 TCCCTGGGGTATGATCGTGT 60.032 55.000 14.00 0.00 36.47 4.49
258 259 0.393077 CCCTGGGGTATGATCGTGTC 59.607 60.000 4.27 0.00 0.00 3.67
259 260 1.414158 CCTGGGGTATGATCGTGTCT 58.586 55.000 0.00 0.00 0.00 3.41
260 261 1.762957 CCTGGGGTATGATCGTGTCTT 59.237 52.381 0.00 0.00 0.00 3.01
261 262 2.483714 CCTGGGGTATGATCGTGTCTTG 60.484 54.545 0.00 0.00 0.00 3.02
262 263 1.134521 TGGGGTATGATCGTGTCTTGC 60.135 52.381 0.00 0.00 0.00 4.01
263 264 1.139058 GGGGTATGATCGTGTCTTGCT 59.861 52.381 0.00 0.00 0.00 3.91
264 265 2.205074 GGGTATGATCGTGTCTTGCTG 58.795 52.381 0.00 0.00 0.00 4.41
265 266 2.418746 GGGTATGATCGTGTCTTGCTGT 60.419 50.000 0.00 0.00 0.00 4.40
266 267 3.181479 GGGTATGATCGTGTCTTGCTGTA 60.181 47.826 0.00 0.00 0.00 2.74
267 268 4.045104 GGTATGATCGTGTCTTGCTGTAG 58.955 47.826 0.00 0.00 0.00 2.74
268 269 2.654749 TGATCGTGTCTTGCTGTAGG 57.345 50.000 0.00 0.00 0.00 3.18
269 270 1.893137 TGATCGTGTCTTGCTGTAGGT 59.107 47.619 0.00 0.00 0.00 3.08
270 271 2.263077 GATCGTGTCTTGCTGTAGGTG 58.737 52.381 0.00 0.00 0.00 4.00
271 272 1.324383 TCGTGTCTTGCTGTAGGTGA 58.676 50.000 0.00 0.00 0.00 4.02
272 273 1.684450 TCGTGTCTTGCTGTAGGTGAA 59.316 47.619 0.00 0.00 0.00 3.18
273 274 2.101750 TCGTGTCTTGCTGTAGGTGAAA 59.898 45.455 0.00 0.00 0.00 2.69
274 275 3.067106 CGTGTCTTGCTGTAGGTGAAAT 58.933 45.455 0.00 0.00 0.00 2.17
275 276 3.123621 CGTGTCTTGCTGTAGGTGAAATC 59.876 47.826 0.00 0.00 0.00 2.17
276 277 4.065088 GTGTCTTGCTGTAGGTGAAATCA 58.935 43.478 0.00 0.00 0.00 2.57
277 278 4.515191 GTGTCTTGCTGTAGGTGAAATCAA 59.485 41.667 0.00 0.00 0.00 2.57
278 279 5.008613 GTGTCTTGCTGTAGGTGAAATCAAA 59.991 40.000 0.00 0.00 0.00 2.69
279 280 5.769662 TGTCTTGCTGTAGGTGAAATCAAAT 59.230 36.000 0.00 0.00 0.00 2.32
280 281 6.072508 TGTCTTGCTGTAGGTGAAATCAAATC 60.073 38.462 0.00 0.00 0.00 2.17
281 282 4.944962 TGCTGTAGGTGAAATCAAATCG 57.055 40.909 0.00 0.00 0.00 3.34
282 283 3.689161 TGCTGTAGGTGAAATCAAATCGG 59.311 43.478 0.00 0.00 0.00 4.18
283 284 3.938963 GCTGTAGGTGAAATCAAATCGGA 59.061 43.478 0.00 0.00 0.00 4.55
284 285 4.201822 GCTGTAGGTGAAATCAAATCGGAC 60.202 45.833 0.00 0.00 0.00 4.79
285 286 4.900684 TGTAGGTGAAATCAAATCGGACA 58.099 39.130 0.00 0.00 0.00 4.02
286 287 5.496556 TGTAGGTGAAATCAAATCGGACAT 58.503 37.500 0.00 0.00 0.00 3.06
287 288 4.970662 AGGTGAAATCAAATCGGACATG 57.029 40.909 0.00 0.00 0.00 3.21
288 289 4.588899 AGGTGAAATCAAATCGGACATGA 58.411 39.130 0.00 0.00 0.00 3.07
289 290 4.637534 AGGTGAAATCAAATCGGACATGAG 59.362 41.667 0.00 0.00 0.00 2.90
290 291 4.346129 GTGAAATCAAATCGGACATGAGC 58.654 43.478 0.00 0.00 0.00 4.26
291 292 4.009002 TGAAATCAAATCGGACATGAGCA 58.991 39.130 0.00 0.00 0.00 4.26
292 293 4.095334 TGAAATCAAATCGGACATGAGCAG 59.905 41.667 0.00 0.00 0.00 4.24
293 294 3.548745 ATCAAATCGGACATGAGCAGA 57.451 42.857 0.00 0.00 0.00 4.26
294 295 2.897436 TCAAATCGGACATGAGCAGAG 58.103 47.619 0.00 0.00 0.00 3.35
295 296 2.497273 TCAAATCGGACATGAGCAGAGA 59.503 45.455 0.00 0.00 0.00 3.10
296 297 3.133542 TCAAATCGGACATGAGCAGAGAT 59.866 43.478 0.00 0.00 0.00 2.75
297 298 2.816204 ATCGGACATGAGCAGAGATG 57.184 50.000 0.00 0.00 0.00 2.90
298 299 1.478631 TCGGACATGAGCAGAGATGT 58.521 50.000 0.00 0.00 35.46 3.06
299 300 2.654863 TCGGACATGAGCAGAGATGTA 58.345 47.619 0.00 0.00 32.85 2.29
300 301 3.023832 TCGGACATGAGCAGAGATGTAA 58.976 45.455 0.00 0.00 32.85 2.41
301 302 3.067320 TCGGACATGAGCAGAGATGTAAG 59.933 47.826 0.00 0.00 32.85 2.34
302 303 3.067320 CGGACATGAGCAGAGATGTAAGA 59.933 47.826 0.00 0.00 32.85 2.10
303 304 4.440663 CGGACATGAGCAGAGATGTAAGAA 60.441 45.833 0.00 0.00 32.85 2.52
304 305 5.423015 GGACATGAGCAGAGATGTAAGAAA 58.577 41.667 0.00 0.00 32.85 2.52
305 306 5.877012 GGACATGAGCAGAGATGTAAGAAAA 59.123 40.000 0.00 0.00 32.85 2.29
306 307 6.036953 GGACATGAGCAGAGATGTAAGAAAAG 59.963 42.308 0.00 0.00 32.85 2.27
307 308 6.705302 ACATGAGCAGAGATGTAAGAAAAGA 58.295 36.000 0.00 0.00 30.86 2.52
308 309 7.164122 ACATGAGCAGAGATGTAAGAAAAGAA 58.836 34.615 0.00 0.00 30.86 2.52
309 310 7.828223 ACATGAGCAGAGATGTAAGAAAAGAAT 59.172 33.333 0.00 0.00 30.86 2.40
310 311 7.840342 TGAGCAGAGATGTAAGAAAAGAATC 57.160 36.000 0.00 0.00 0.00 2.52
311 312 7.619050 TGAGCAGAGATGTAAGAAAAGAATCT 58.381 34.615 0.00 0.00 0.00 2.40
312 313 8.753133 TGAGCAGAGATGTAAGAAAAGAATCTA 58.247 33.333 0.00 0.00 0.00 1.98
313 314 9.593134 GAGCAGAGATGTAAGAAAAGAATCTAA 57.407 33.333 0.00 0.00 0.00 2.10
337 338 7.719871 ATATATGCGGGTATATAGTCATCCC 57.280 40.000 3.50 0.00 31.13 3.85
338 339 2.463752 TGCGGGTATATAGTCATCCCC 58.536 52.381 0.85 0.00 35.11 4.81
344 345 6.402456 GGGTATATAGTCATCCCCGTTATC 57.598 45.833 0.00 0.00 32.66 1.75
345 346 6.134754 GGGTATATAGTCATCCCCGTTATCT 58.865 44.000 0.00 0.00 32.66 1.98
346 347 6.610425 GGGTATATAGTCATCCCCGTTATCTT 59.390 42.308 0.00 0.00 32.66 2.40
347 348 7.417570 GGGTATATAGTCATCCCCGTTATCTTG 60.418 44.444 0.00 0.00 32.66 3.02
348 349 7.341256 GGTATATAGTCATCCCCGTTATCTTGA 59.659 40.741 0.00 0.00 0.00 3.02
349 350 7.979786 ATATAGTCATCCCCGTTATCTTGAT 57.020 36.000 0.00 0.00 0.00 2.57
350 351 6.688073 ATAGTCATCCCCGTTATCTTGATT 57.312 37.500 0.00 0.00 0.00 2.57
351 352 5.373812 AGTCATCCCCGTTATCTTGATTT 57.626 39.130 0.00 0.00 0.00 2.17
352 353 5.126067 AGTCATCCCCGTTATCTTGATTTG 58.874 41.667 0.00 0.00 0.00 2.32
353 354 5.104527 AGTCATCCCCGTTATCTTGATTTGA 60.105 40.000 0.00 0.00 0.00 2.69
354 355 5.237344 GTCATCCCCGTTATCTTGATTTGAG 59.763 44.000 0.00 0.00 0.00 3.02
355 356 4.837093 TCCCCGTTATCTTGATTTGAGT 57.163 40.909 0.00 0.00 0.00 3.41
356 357 5.174037 TCCCCGTTATCTTGATTTGAGTT 57.826 39.130 0.00 0.00 0.00 3.01
357 358 5.566469 TCCCCGTTATCTTGATTTGAGTTT 58.434 37.500 0.00 0.00 0.00 2.66
358 359 6.007703 TCCCCGTTATCTTGATTTGAGTTTT 58.992 36.000 0.00 0.00 0.00 2.43
359 360 6.492087 TCCCCGTTATCTTGATTTGAGTTTTT 59.508 34.615 0.00 0.00 0.00 1.94
360 361 7.666388 TCCCCGTTATCTTGATTTGAGTTTTTA 59.334 33.333 0.00 0.00 0.00 1.52
361 362 7.753580 CCCCGTTATCTTGATTTGAGTTTTTAC 59.246 37.037 0.00 0.00 0.00 2.01
362 363 8.512138 CCCGTTATCTTGATTTGAGTTTTTACT 58.488 33.333 0.00 0.00 0.00 2.24
363 364 9.893305 CCGTTATCTTGATTTGAGTTTTTACTT 57.107 29.630 0.00 0.00 0.00 2.24
404 405 8.459521 TGATTTGAGTTTTTACAACACAACTG 57.540 30.769 0.00 0.00 32.14 3.16
416 417 5.376625 ACAACACAACTGATGATGTAACCT 58.623 37.500 0.00 0.00 0.00 3.50
453 454 8.593945 ATCACTAATGGCCTTTGAGATTTTTA 57.406 30.769 13.96 0.00 0.00 1.52
455 456 7.035612 CACTAATGGCCTTTGAGATTTTTACC 58.964 38.462 13.96 0.00 0.00 2.85
549 553 0.684479 ACTGTCTGCGATGCCTCCTA 60.684 55.000 0.00 0.00 0.00 2.94
561 565 0.393132 GCCTCCTAACTGGTTCTGCC 60.393 60.000 0.00 0.00 37.07 4.85
577 581 1.135527 CTGCCATGATGCCATTTTCGT 59.864 47.619 0.00 0.00 0.00 3.85
651 659 2.743938 TCTCTTTTCAGTGACTGCGTC 58.256 47.619 7.93 2.32 0.00 5.19
699 709 1.067425 CCTCCATGAACAACCGTACGA 60.067 52.381 18.76 0.00 0.00 3.43
732 742 1.792993 GCTGCGTTCATCTGTTCATGC 60.793 52.381 0.00 0.00 0.00 4.06
734 744 1.197492 TGCGTTCATCTGTTCATGCAC 59.803 47.619 0.00 0.00 0.00 4.57
735 745 1.787989 GCGTTCATCTGTTCATGCACG 60.788 52.381 0.00 1.93 43.57 5.34
736 746 1.201954 CGTTCATCTGTTCATGCACGG 60.202 52.381 0.00 0.00 39.03 4.94
737 747 0.804364 TTCATCTGTTCATGCACGGC 59.196 50.000 0.00 0.00 0.00 5.68
793 806 3.758554 CCAAGACCCGAATTCAATGAAGT 59.241 43.478 6.22 0.00 0.00 3.01
799 812 4.156556 ACCCGAATTCAATGAAGTGACATG 59.843 41.667 0.00 0.00 0.00 3.21
1034 1062 1.067846 CAGCGTCACACTACCTAAGCA 60.068 52.381 0.00 0.00 0.00 3.91
1068 1100 4.840005 GCACCGGAGCCAGCCTAC 62.840 72.222 13.51 0.00 0.00 3.18
1085 1117 1.764571 TACTCCGTGCCCTGCTGTTT 61.765 55.000 0.00 0.00 0.00 2.83
1175 1207 4.906618 ACATGATCATGAGCATCTGCATA 58.093 39.130 36.37 0.00 41.80 3.14
1229 1261 3.790416 AAGCCCGGACTGCAGCAAA 62.790 57.895 15.27 0.00 0.00 3.68
1384 1416 3.440173 GGAAGTAAGCAACTAAGCATGCA 59.560 43.478 21.98 0.00 44.95 3.96
1391 1423 8.868583 AGTAAGCAACTAAGCATGCATGCATAT 61.869 37.037 43.55 32.43 46.28 1.78
1410 1442 7.312657 GCATATATACATGCTTGCTATGTGT 57.687 36.000 8.77 12.84 46.35 3.72
1411 1443 7.184779 GCATATATACATGCTTGCTATGTGTG 58.815 38.462 8.77 11.89 46.35 3.82
1412 1444 3.976793 ATACATGCTTGCTATGTGTGC 57.023 42.857 15.53 0.00 39.03 4.57
1413 1445 1.536940 ACATGCTTGCTATGTGTGCA 58.463 45.000 0.00 0.00 37.38 4.57
1414 1446 1.471287 ACATGCTTGCTATGTGTGCAG 59.529 47.619 0.00 0.00 41.71 4.41
1415 1447 1.741145 CATGCTTGCTATGTGTGCAGA 59.259 47.619 0.00 0.00 41.71 4.26
1416 1448 1.445871 TGCTTGCTATGTGTGCAGAG 58.554 50.000 0.00 0.00 41.71 3.35
1417 1449 1.002315 TGCTTGCTATGTGTGCAGAGA 59.998 47.619 0.00 0.00 41.71 3.10
1445 1480 9.109533 CTTGCATAATTCATTTTTCTGTTTTGC 57.890 29.630 0.00 0.00 0.00 3.68
1446 1481 8.151141 TGCATAATTCATTTTTCTGTTTTGCA 57.849 26.923 0.00 0.00 0.00 4.08
1447 1482 8.068977 TGCATAATTCATTTTTCTGTTTTGCAC 58.931 29.630 0.00 0.00 0.00 4.57
1448 1483 8.284693 GCATAATTCATTTTTCTGTTTTGCACT 58.715 29.630 0.00 0.00 0.00 4.40
1449 1484 9.588774 CATAATTCATTTTTCTGTTTTGCACTG 57.411 29.630 0.00 0.00 0.00 3.66
1450 1485 5.467902 TTCATTTTTCTGTTTTGCACTGC 57.532 34.783 0.00 0.00 0.00 4.40
1617 1660 6.991938 AGAGATCATGGCAGAATAACTACTC 58.008 40.000 0.00 0.00 0.00 2.59
1638 1681 0.724453 AAATAAAGTGCGTGCGTGCG 60.724 50.000 0.00 0.00 37.81 5.34
1639 1682 1.837538 AATAAAGTGCGTGCGTGCGT 61.838 50.000 3.11 0.00 37.81 5.24
1672 1722 3.738399 GCTAGTGAGCTATCGTCATACG 58.262 50.000 0.00 0.00 45.98 3.06
1673 1723 3.186817 GCTAGTGAGCTATCGTCATACGT 59.813 47.826 0.00 0.00 45.98 3.57
1675 1725 4.994220 AGTGAGCTATCGTCATACGTAG 57.006 45.455 0.08 2.86 43.14 3.51
1678 1728 5.701750 AGTGAGCTATCGTCATACGTAGAAT 59.298 40.000 0.08 0.00 43.14 2.40
1679 1729 5.790988 GTGAGCTATCGTCATACGTAGAATG 59.209 44.000 0.08 0.00 43.14 2.67
1680 1730 5.469084 TGAGCTATCGTCATACGTAGAATGT 59.531 40.000 0.08 0.00 43.14 2.71
1756 4814 9.569167 GTAACAATAAAAGCCTTCCATCTAAAC 57.431 33.333 0.00 0.00 0.00 2.01
1766 4824 7.862675 AGCCTTCCATCTAAACAGTTAGTATT 58.137 34.615 0.00 0.00 38.33 1.89
1777 4835 6.428385 AACAGTTAGTATTCTTCATGCAGC 57.572 37.500 0.00 0.00 0.00 5.25
1794 4852 2.225491 GCAGCCATTACAACGACTGAAA 59.775 45.455 0.00 0.00 0.00 2.69
1812 4870 7.166628 ACTGAAATTGCTACGAATTCGATAG 57.833 36.000 33.05 26.50 43.02 2.08
1827 4885 2.159099 TCGATAGCGATGCTGGTTCTTT 60.159 45.455 0.00 0.00 42.51 2.52
1981 5095 2.805845 TCTACTTATTTCGCTCGTGGC 58.194 47.619 0.00 0.00 37.64 5.01
1992 5106 0.947180 GCTCGTGGCGTTGGTCTTTA 60.947 55.000 0.00 0.00 0.00 1.85
2053 5168 9.495572 ACGTCAATTTCTTTCTCTTCTTTATCT 57.504 29.630 0.00 0.00 0.00 1.98
2161 5276 1.063951 CGTCGTGGCTAGTTGTCGAC 61.064 60.000 9.11 9.11 44.49 4.20
2204 5319 2.186826 CGCCGACCCAAATGATCCC 61.187 63.158 0.00 0.00 0.00 3.85
2242 5357 3.316868 GTCGGAATGGACCAAAAGAACAA 59.683 43.478 0.00 0.00 0.00 2.83
2251 5366 3.018149 ACCAAAAGAACAACCTAACGCA 58.982 40.909 0.00 0.00 0.00 5.24
2254 5369 2.335316 AAGAACAACCTAACGCACCA 57.665 45.000 0.00 0.00 0.00 4.17
2257 5372 1.944709 GAACAACCTAACGCACCAACT 59.055 47.619 0.00 0.00 0.00 3.16
2315 5430 4.881920 ACGCATTTTAGGCTCAAATTTGT 58.118 34.783 17.47 3.65 0.00 2.83
2319 5434 5.179929 GCATTTTAGGCTCAAATTTGTGCTT 59.820 36.000 32.42 29.37 44.55 3.91
2344 5459 2.582498 GTCCACGCGGATTCGAGG 60.582 66.667 12.47 0.00 45.33 4.63
2375 5493 2.333938 CGTCCGTTCAGTGTCCGT 59.666 61.111 0.00 0.00 0.00 4.69
2414 5532 2.591429 CACAACCACTGCCTGCGA 60.591 61.111 0.00 0.00 0.00 5.10
2440 5558 1.058284 TAAACACGGCCACCTACCTT 58.942 50.000 2.24 0.00 0.00 3.50
2488 5606 2.972021 ACCAGGCCTTTTTAATGCAAGT 59.028 40.909 0.00 0.00 0.00 3.16
2600 5718 0.106419 TGGGTTTCTTTCGCAAGGGT 60.106 50.000 0.00 0.00 38.47 4.34
2601 5719 1.143277 TGGGTTTCTTTCGCAAGGGTA 59.857 47.619 0.00 0.00 38.47 3.69
2602 5720 2.232399 GGGTTTCTTTCGCAAGGGTAA 58.768 47.619 0.00 0.00 38.47 2.85
2603 5721 2.823747 GGGTTTCTTTCGCAAGGGTAAT 59.176 45.455 0.00 0.00 38.47 1.89
2604 5722 3.257375 GGGTTTCTTTCGCAAGGGTAATT 59.743 43.478 0.00 0.00 38.47 1.40
2609 5727 7.309920 GTTTCTTTCGCAAGGGTAATTAATGA 58.690 34.615 0.00 0.00 38.47 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.827315 TTCGCGCTTGGTTTGTCTCG 61.827 55.000 5.56 0.00 0.00 4.04
1 2 0.110644 CTTCGCGCTTGGTTTGTCTC 60.111 55.000 5.56 0.00 0.00 3.36
2 3 1.941812 CTTCGCGCTTGGTTTGTCT 59.058 52.632 5.56 0.00 0.00 3.41
3 4 1.725973 GCTTCGCGCTTGGTTTGTC 60.726 57.895 5.56 0.00 35.14 3.18
4 5 1.999071 TTGCTTCGCGCTTGGTTTGT 61.999 50.000 5.56 0.00 40.11 2.83
5 6 1.270777 CTTGCTTCGCGCTTGGTTTG 61.271 55.000 5.56 0.00 40.11 2.93
6 7 1.008538 CTTGCTTCGCGCTTGGTTT 60.009 52.632 5.56 0.00 40.11 3.27
7 8 1.891919 TCTTGCTTCGCGCTTGGTT 60.892 52.632 5.56 0.00 40.11 3.67
8 9 2.280797 TCTTGCTTCGCGCTTGGT 60.281 55.556 5.56 0.00 40.11 3.67
9 10 1.915614 ATGTCTTGCTTCGCGCTTGG 61.916 55.000 5.56 0.00 40.11 3.61
10 11 0.519999 GATGTCTTGCTTCGCGCTTG 60.520 55.000 5.56 0.00 40.11 4.01
11 12 1.639298 GGATGTCTTGCTTCGCGCTT 61.639 55.000 5.56 0.00 40.11 4.68
12 13 2.103042 GGATGTCTTGCTTCGCGCT 61.103 57.895 5.56 0.00 40.11 5.92
13 14 2.301902 CTGGATGTCTTGCTTCGCGC 62.302 60.000 0.00 0.00 39.77 6.86
14 15 1.699656 CCTGGATGTCTTGCTTCGCG 61.700 60.000 0.00 0.00 0.00 5.87
15 16 1.986575 GCCTGGATGTCTTGCTTCGC 61.987 60.000 0.00 0.00 0.00 4.70
16 17 0.392193 AGCCTGGATGTCTTGCTTCG 60.392 55.000 0.00 0.00 0.00 3.79
17 18 1.093159 CAGCCTGGATGTCTTGCTTC 58.907 55.000 3.21 0.00 0.00 3.86
18 19 0.323178 CCAGCCTGGATGTCTTGCTT 60.323 55.000 4.15 0.00 40.96 3.91
19 20 1.302285 CCAGCCTGGATGTCTTGCT 59.698 57.895 4.15 0.00 40.96 3.91
20 21 1.751927 CCCAGCCTGGATGTCTTGC 60.752 63.158 13.74 0.00 40.96 4.01
21 22 1.751927 GCCCAGCCTGGATGTCTTG 60.752 63.158 13.74 0.00 40.96 3.02
22 23 1.504275 AAGCCCAGCCTGGATGTCTT 61.504 55.000 13.74 10.53 40.96 3.01
23 24 1.919600 GAAGCCCAGCCTGGATGTCT 61.920 60.000 13.74 4.73 40.96 3.41
24 25 1.452833 GAAGCCCAGCCTGGATGTC 60.453 63.158 13.74 1.89 40.96 3.06
25 26 2.679716 GAAGCCCAGCCTGGATGT 59.320 61.111 13.74 0.00 40.96 3.06
26 27 2.515523 CGAAGCCCAGCCTGGATG 60.516 66.667 13.74 4.63 40.96 3.51
27 28 3.801997 CCGAAGCCCAGCCTGGAT 61.802 66.667 13.74 0.00 40.96 3.41
44 45 4.103103 GTTTCAAGCGGGCCGAGC 62.103 66.667 33.44 13.60 0.00 5.03
45 46 3.431725 GGTTTCAAGCGGGCCGAG 61.432 66.667 33.44 18.63 0.00 4.63
48 49 3.373565 CTGGGTTTCAAGCGGGCC 61.374 66.667 0.00 0.00 0.00 5.80
49 50 1.460273 TTTCTGGGTTTCAAGCGGGC 61.460 55.000 0.00 0.00 0.00 6.13
50 51 1.000274 CTTTTCTGGGTTTCAAGCGGG 60.000 52.381 0.00 0.00 0.00 6.13
51 52 1.602920 GCTTTTCTGGGTTTCAAGCGG 60.603 52.381 0.00 0.00 31.19 5.52
52 53 1.066908 TGCTTTTCTGGGTTTCAAGCG 59.933 47.619 0.00 0.00 42.35 4.68
53 54 2.159114 TGTGCTTTTCTGGGTTTCAAGC 60.159 45.455 0.00 0.00 40.29 4.01
54 55 3.799281 TGTGCTTTTCTGGGTTTCAAG 57.201 42.857 0.00 0.00 0.00 3.02
55 56 4.543590 TTTGTGCTTTTCTGGGTTTCAA 57.456 36.364 0.00 0.00 0.00 2.69
56 57 4.751767 ATTTGTGCTTTTCTGGGTTTCA 57.248 36.364 0.00 0.00 0.00 2.69
57 58 5.408204 CAATTTGTGCTTTTCTGGGTTTC 57.592 39.130 0.00 0.00 0.00 2.78
71 72 3.354089 AACGAGTTCCAGCAATTTGTG 57.646 42.857 0.00 0.00 0.00 3.33
72 73 4.385358 AAAACGAGTTCCAGCAATTTGT 57.615 36.364 0.00 0.00 0.00 2.83
73 74 5.977129 ACTAAAAACGAGTTCCAGCAATTTG 59.023 36.000 0.00 0.00 0.00 2.32
74 75 6.144078 ACTAAAAACGAGTTCCAGCAATTT 57.856 33.333 0.00 0.00 0.00 1.82
75 76 5.767816 ACTAAAAACGAGTTCCAGCAATT 57.232 34.783 0.00 0.00 0.00 2.32
76 77 5.767816 AACTAAAAACGAGTTCCAGCAAT 57.232 34.783 0.00 0.00 31.36 3.56
77 78 5.570234 AAACTAAAAACGAGTTCCAGCAA 57.430 34.783 0.00 0.00 36.10 3.91
78 79 6.680874 TTAAACTAAAAACGAGTTCCAGCA 57.319 33.333 0.00 0.00 36.10 4.41
79 80 7.824673 GTTTTAAACTAAAAACGAGTTCCAGC 58.175 34.615 0.00 0.00 38.98 4.85
99 100 9.853555 CTGATGCAAACCTACATTATTGTTTTA 57.146 29.630 0.00 0.00 37.28 1.52
100 101 8.584157 TCTGATGCAAACCTACATTATTGTTTT 58.416 29.630 0.00 0.00 37.28 2.43
101 102 8.121305 TCTGATGCAAACCTACATTATTGTTT 57.879 30.769 0.00 0.00 37.28 2.83
102 103 7.701539 TCTGATGCAAACCTACATTATTGTT 57.298 32.000 0.00 0.00 37.28 2.83
103 104 7.701539 TTCTGATGCAAACCTACATTATTGT 57.298 32.000 0.00 0.00 39.98 2.71
104 105 8.984891 TTTTCTGATGCAAACCTACATTATTG 57.015 30.769 0.00 0.00 0.00 1.90
105 106 9.590451 CATTTTCTGATGCAAACCTACATTATT 57.410 29.630 0.00 0.00 0.00 1.40
106 107 8.970020 TCATTTTCTGATGCAAACCTACATTAT 58.030 29.630 0.00 0.00 0.00 1.28
107 108 8.347004 TCATTTTCTGATGCAAACCTACATTA 57.653 30.769 0.00 0.00 0.00 1.90
108 109 7.230849 TCATTTTCTGATGCAAACCTACATT 57.769 32.000 0.00 0.00 0.00 2.71
109 110 6.839124 TCATTTTCTGATGCAAACCTACAT 57.161 33.333 0.00 0.00 0.00 2.29
110 111 6.647334 TTCATTTTCTGATGCAAACCTACA 57.353 33.333 0.00 0.00 32.72 2.74
111 112 9.638239 TTTATTCATTTTCTGATGCAAACCTAC 57.362 29.630 0.00 0.00 32.72 3.18
113 114 9.729281 AATTTATTCATTTTCTGATGCAAACCT 57.271 25.926 0.00 0.00 32.72 3.50
156 157 5.278266 CCAGCCTAGATTGAAACGACAAAAA 60.278 40.000 0.00 0.00 33.44 1.94
157 158 4.215399 CCAGCCTAGATTGAAACGACAAAA 59.785 41.667 0.00 0.00 33.44 2.44
158 159 3.751175 CCAGCCTAGATTGAAACGACAAA 59.249 43.478 0.00 0.00 33.44 2.83
159 160 3.244422 ACCAGCCTAGATTGAAACGACAA 60.244 43.478 0.00 0.00 0.00 3.18
160 161 2.301870 ACCAGCCTAGATTGAAACGACA 59.698 45.455 0.00 0.00 0.00 4.35
161 162 2.973945 ACCAGCCTAGATTGAAACGAC 58.026 47.619 0.00 0.00 0.00 4.34
162 163 3.596214 GAACCAGCCTAGATTGAAACGA 58.404 45.455 0.00 0.00 0.00 3.85
163 164 2.348666 CGAACCAGCCTAGATTGAAACG 59.651 50.000 0.00 0.00 0.00 3.60
164 165 3.125316 CACGAACCAGCCTAGATTGAAAC 59.875 47.826 0.00 0.00 0.00 2.78
165 166 3.334691 CACGAACCAGCCTAGATTGAAA 58.665 45.455 0.00 0.00 0.00 2.69
166 167 2.935238 GCACGAACCAGCCTAGATTGAA 60.935 50.000 0.00 0.00 0.00 2.69
167 168 1.405526 GCACGAACCAGCCTAGATTGA 60.406 52.381 0.00 0.00 0.00 2.57
168 169 1.009829 GCACGAACCAGCCTAGATTG 58.990 55.000 0.00 0.00 0.00 2.67
169 170 0.905357 AGCACGAACCAGCCTAGATT 59.095 50.000 0.00 0.00 0.00 2.40
170 171 0.461961 GAGCACGAACCAGCCTAGAT 59.538 55.000 0.00 0.00 0.00 1.98
171 172 1.890894 GAGCACGAACCAGCCTAGA 59.109 57.895 0.00 0.00 0.00 2.43
172 173 1.517257 CGAGCACGAACCAGCCTAG 60.517 63.158 0.00 0.00 42.66 3.02
173 174 1.974875 TCGAGCACGAACCAGCCTA 60.975 57.895 3.01 0.00 45.74 3.93
174 175 3.303135 TCGAGCACGAACCAGCCT 61.303 61.111 3.01 0.00 45.74 4.58
182 183 0.179137 CATACCAAGCTCGAGCACGA 60.179 55.000 36.87 18.40 46.56 4.35
183 184 1.756375 GCATACCAAGCTCGAGCACG 61.756 60.000 36.87 26.25 45.16 5.34
184 185 1.432270 GGCATACCAAGCTCGAGCAC 61.432 60.000 36.87 15.70 38.78 4.40
185 186 1.153369 GGCATACCAAGCTCGAGCA 60.153 57.895 36.87 18.29 38.78 4.26
186 187 0.389391 TAGGCATACCAAGCTCGAGC 59.611 55.000 30.01 30.01 39.06 5.03
187 188 1.604185 GCTAGGCATACCAAGCTCGAG 60.604 57.143 8.45 8.45 39.06 4.04
188 189 0.389391 GCTAGGCATACCAAGCTCGA 59.611 55.000 0.00 0.00 39.06 4.04
189 190 0.601311 GGCTAGGCATACCAAGCTCG 60.601 60.000 12.16 0.00 39.06 5.03
190 191 0.601311 CGGCTAGGCATACCAAGCTC 60.601 60.000 17.45 0.00 39.06 4.09
191 192 1.048724 TCGGCTAGGCATACCAAGCT 61.049 55.000 17.45 0.00 39.06 3.74
192 193 0.601311 CTCGGCTAGGCATACCAAGC 60.601 60.000 17.45 0.00 39.06 4.01
193 194 0.753262 ACTCGGCTAGGCATACCAAG 59.247 55.000 17.45 5.80 39.06 3.61
194 195 1.200519 AACTCGGCTAGGCATACCAA 58.799 50.000 17.45 0.00 39.06 3.67
195 196 1.200519 AAACTCGGCTAGGCATACCA 58.799 50.000 17.45 0.00 39.06 3.25
196 197 1.940613 CAAAACTCGGCTAGGCATACC 59.059 52.381 17.45 0.00 0.00 2.73
197 198 2.629051 ACAAAACTCGGCTAGGCATAC 58.371 47.619 17.45 0.00 0.00 2.39
198 199 3.343941 AACAAAACTCGGCTAGGCATA 57.656 42.857 17.45 2.54 0.00 3.14
199 200 2.200373 AACAAAACTCGGCTAGGCAT 57.800 45.000 17.45 0.00 0.00 4.40
200 201 2.224329 TGTAACAAAACTCGGCTAGGCA 60.224 45.455 17.45 2.79 0.00 4.75
201 202 2.419667 TGTAACAAAACTCGGCTAGGC 58.580 47.619 6.15 6.15 0.00 3.93
202 203 3.621715 GGATGTAACAAAACTCGGCTAGG 59.378 47.826 0.00 0.00 0.00 3.02
203 204 4.250464 TGGATGTAACAAAACTCGGCTAG 58.750 43.478 0.00 0.00 0.00 3.42
204 205 4.250464 CTGGATGTAACAAAACTCGGCTA 58.750 43.478 0.00 0.00 0.00 3.93
205 206 3.074412 CTGGATGTAACAAAACTCGGCT 58.926 45.455 0.00 0.00 0.00 5.52
206 207 2.414161 GCTGGATGTAACAAAACTCGGC 60.414 50.000 0.00 0.00 0.00 5.54
207 208 2.161609 GGCTGGATGTAACAAAACTCGG 59.838 50.000 0.00 0.00 0.00 4.63
208 209 2.161609 GGGCTGGATGTAACAAAACTCG 59.838 50.000 0.00 0.00 0.00 4.18
209 210 3.153919 TGGGCTGGATGTAACAAAACTC 58.846 45.455 0.00 0.00 0.00 3.01
210 211 3.237268 TGGGCTGGATGTAACAAAACT 57.763 42.857 0.00 0.00 0.00 2.66
211 212 4.329462 TTTGGGCTGGATGTAACAAAAC 57.671 40.909 0.00 0.00 0.00 2.43
212 213 4.020662 GGATTTGGGCTGGATGTAACAAAA 60.021 41.667 0.00 0.00 32.44 2.44
213 214 3.513515 GGATTTGGGCTGGATGTAACAAA 59.486 43.478 0.00 0.00 33.11 2.83
214 215 3.096092 GGATTTGGGCTGGATGTAACAA 58.904 45.455 0.00 0.00 0.00 2.83
215 216 2.042297 TGGATTTGGGCTGGATGTAACA 59.958 45.455 0.00 0.00 0.00 2.41
216 217 2.427095 GTGGATTTGGGCTGGATGTAAC 59.573 50.000 0.00 0.00 0.00 2.50
217 218 2.311542 AGTGGATTTGGGCTGGATGTAA 59.688 45.455 0.00 0.00 0.00 2.41
218 219 1.922447 AGTGGATTTGGGCTGGATGTA 59.078 47.619 0.00 0.00 0.00 2.29
219 220 0.706433 AGTGGATTTGGGCTGGATGT 59.294 50.000 0.00 0.00 0.00 3.06
220 221 1.396653 GAGTGGATTTGGGCTGGATG 58.603 55.000 0.00 0.00 0.00 3.51
221 222 0.259938 GGAGTGGATTTGGGCTGGAT 59.740 55.000 0.00 0.00 0.00 3.41
222 223 1.691219 GGAGTGGATTTGGGCTGGA 59.309 57.895 0.00 0.00 0.00 3.86
223 224 1.380380 GGGAGTGGATTTGGGCTGG 60.380 63.158 0.00 0.00 0.00 4.85
224 225 0.682209 CAGGGAGTGGATTTGGGCTG 60.682 60.000 0.00 0.00 0.00 4.85
225 226 1.693640 CAGGGAGTGGATTTGGGCT 59.306 57.895 0.00 0.00 0.00 5.19
226 227 4.344237 CAGGGAGTGGATTTGGGC 57.656 61.111 0.00 0.00 0.00 5.36
235 236 0.681733 CGATCATACCCCAGGGAGTG 59.318 60.000 7.25 7.70 38.96 3.51
236 237 0.264955 ACGATCATACCCCAGGGAGT 59.735 55.000 7.25 5.90 38.96 3.85
237 238 0.681733 CACGATCATACCCCAGGGAG 59.318 60.000 7.25 0.00 38.96 4.30
238 239 0.031515 ACACGATCATACCCCAGGGA 60.032 55.000 7.25 0.00 38.96 4.20
239 240 0.393077 GACACGATCATACCCCAGGG 59.607 60.000 0.00 0.00 42.03 4.45
240 241 1.414158 AGACACGATCATACCCCAGG 58.586 55.000 0.00 0.00 0.00 4.45
241 242 2.826428 CAAGACACGATCATACCCCAG 58.174 52.381 0.00 0.00 0.00 4.45
242 243 1.134521 GCAAGACACGATCATACCCCA 60.135 52.381 0.00 0.00 0.00 4.96
243 244 1.139058 AGCAAGACACGATCATACCCC 59.861 52.381 0.00 0.00 0.00 4.95
244 245 2.205074 CAGCAAGACACGATCATACCC 58.795 52.381 0.00 0.00 0.00 3.69
245 246 2.893637 ACAGCAAGACACGATCATACC 58.106 47.619 0.00 0.00 0.00 2.73
246 247 4.045104 CCTACAGCAAGACACGATCATAC 58.955 47.826 0.00 0.00 0.00 2.39
247 248 3.699538 ACCTACAGCAAGACACGATCATA 59.300 43.478 0.00 0.00 0.00 2.15
248 249 2.497675 ACCTACAGCAAGACACGATCAT 59.502 45.455 0.00 0.00 0.00 2.45
249 250 1.893137 ACCTACAGCAAGACACGATCA 59.107 47.619 0.00 0.00 0.00 2.92
250 251 2.094700 TCACCTACAGCAAGACACGATC 60.095 50.000 0.00 0.00 0.00 3.69
251 252 1.893137 TCACCTACAGCAAGACACGAT 59.107 47.619 0.00 0.00 0.00 3.73
252 253 1.324383 TCACCTACAGCAAGACACGA 58.676 50.000 0.00 0.00 0.00 4.35
253 254 2.148916 TTCACCTACAGCAAGACACG 57.851 50.000 0.00 0.00 0.00 4.49
254 255 4.065088 TGATTTCACCTACAGCAAGACAC 58.935 43.478 0.00 0.00 0.00 3.67
255 256 4.350368 TGATTTCACCTACAGCAAGACA 57.650 40.909 0.00 0.00 0.00 3.41
256 257 5.689383 TTTGATTTCACCTACAGCAAGAC 57.311 39.130 0.00 0.00 0.00 3.01
257 258 5.122239 CGATTTGATTTCACCTACAGCAAGA 59.878 40.000 0.00 0.00 0.00 3.02
258 259 5.327091 CGATTTGATTTCACCTACAGCAAG 58.673 41.667 0.00 0.00 0.00 4.01
259 260 4.155826 CCGATTTGATTTCACCTACAGCAA 59.844 41.667 0.00 0.00 0.00 3.91
260 261 3.689161 CCGATTTGATTTCACCTACAGCA 59.311 43.478 0.00 0.00 0.00 4.41
261 262 3.938963 TCCGATTTGATTTCACCTACAGC 59.061 43.478 0.00 0.00 0.00 4.40
262 263 4.935205 TGTCCGATTTGATTTCACCTACAG 59.065 41.667 0.00 0.00 0.00 2.74
263 264 4.900684 TGTCCGATTTGATTTCACCTACA 58.099 39.130 0.00 0.00 0.00 2.74
264 265 5.584649 TCATGTCCGATTTGATTTCACCTAC 59.415 40.000 0.00 0.00 0.00 3.18
265 266 5.739959 TCATGTCCGATTTGATTTCACCTA 58.260 37.500 0.00 0.00 0.00 3.08
266 267 4.588899 TCATGTCCGATTTGATTTCACCT 58.411 39.130 0.00 0.00 0.00 4.00
267 268 4.731773 GCTCATGTCCGATTTGATTTCACC 60.732 45.833 0.00 0.00 0.00 4.02
268 269 4.142622 TGCTCATGTCCGATTTGATTTCAC 60.143 41.667 0.00 0.00 0.00 3.18
269 270 4.009002 TGCTCATGTCCGATTTGATTTCA 58.991 39.130 0.00 0.00 0.00 2.69
270 271 4.333649 TCTGCTCATGTCCGATTTGATTTC 59.666 41.667 0.00 0.00 0.00 2.17
271 272 4.264253 TCTGCTCATGTCCGATTTGATTT 58.736 39.130 0.00 0.00 0.00 2.17
272 273 3.875727 CTCTGCTCATGTCCGATTTGATT 59.124 43.478 0.00 0.00 0.00 2.57
273 274 3.133542 TCTCTGCTCATGTCCGATTTGAT 59.866 43.478 0.00 0.00 0.00 2.57
274 275 2.497273 TCTCTGCTCATGTCCGATTTGA 59.503 45.455 0.00 0.00 0.00 2.69
275 276 2.897436 TCTCTGCTCATGTCCGATTTG 58.103 47.619 0.00 0.00 0.00 2.32
276 277 3.118482 ACATCTCTGCTCATGTCCGATTT 60.118 43.478 0.00 0.00 0.00 2.17
277 278 2.433604 ACATCTCTGCTCATGTCCGATT 59.566 45.455 0.00 0.00 0.00 3.34
278 279 2.037901 ACATCTCTGCTCATGTCCGAT 58.962 47.619 0.00 0.00 0.00 4.18
279 280 1.478631 ACATCTCTGCTCATGTCCGA 58.521 50.000 0.00 0.00 0.00 4.55
280 281 3.067320 TCTTACATCTCTGCTCATGTCCG 59.933 47.826 0.00 0.00 34.92 4.79
281 282 4.662468 TCTTACATCTCTGCTCATGTCC 57.338 45.455 0.00 0.00 34.92 4.02
282 283 6.815641 TCTTTTCTTACATCTCTGCTCATGTC 59.184 38.462 0.00 0.00 34.92 3.06
283 284 6.705302 TCTTTTCTTACATCTCTGCTCATGT 58.295 36.000 0.00 0.00 37.08 3.21
284 285 7.606858 TTCTTTTCTTACATCTCTGCTCATG 57.393 36.000 0.00 0.00 0.00 3.07
285 286 8.266473 AGATTCTTTTCTTACATCTCTGCTCAT 58.734 33.333 0.00 0.00 0.00 2.90
286 287 7.619050 AGATTCTTTTCTTACATCTCTGCTCA 58.381 34.615 0.00 0.00 0.00 4.26
287 288 9.593134 TTAGATTCTTTTCTTACATCTCTGCTC 57.407 33.333 0.00 0.00 0.00 4.26
311 312 9.251440 GGGATGACTATATACCCGCATATATTA 57.749 37.037 0.00 0.00 31.55 0.98
312 313 7.180408 GGGGATGACTATATACCCGCATATATT 59.820 40.741 0.00 0.00 41.35 1.28
313 314 6.668283 GGGGATGACTATATACCCGCATATAT 59.332 42.308 0.00 3.15 41.35 0.86
314 315 6.014647 GGGGATGACTATATACCCGCATATA 58.985 44.000 0.00 0.00 41.35 0.86
315 316 4.838986 GGGGATGACTATATACCCGCATAT 59.161 45.833 0.00 0.00 41.35 1.78
316 317 4.220724 GGGGATGACTATATACCCGCATA 58.779 47.826 0.00 0.00 41.35 3.14
317 318 3.039011 GGGGATGACTATATACCCGCAT 58.961 50.000 0.00 0.00 41.35 4.73
318 319 2.463752 GGGGATGACTATATACCCGCA 58.536 52.381 0.00 0.00 41.35 5.69
321 322 6.134754 AGATAACGGGGATGACTATATACCC 58.865 44.000 0.00 0.00 46.34 3.69
322 323 7.341256 TCAAGATAACGGGGATGACTATATACC 59.659 40.741 0.00 0.00 0.00 2.73
323 324 8.289939 TCAAGATAACGGGGATGACTATATAC 57.710 38.462 0.00 0.00 0.00 1.47
324 325 9.488762 AATCAAGATAACGGGGATGACTATATA 57.511 33.333 0.00 0.00 0.00 0.86
325 326 7.979786 ATCAAGATAACGGGGATGACTATAT 57.020 36.000 0.00 0.00 0.00 0.86
326 327 7.792364 AATCAAGATAACGGGGATGACTATA 57.208 36.000 0.00 0.00 0.00 1.31
327 328 6.688073 AATCAAGATAACGGGGATGACTAT 57.312 37.500 0.00 0.00 0.00 2.12
328 329 6.099125 TCAAATCAAGATAACGGGGATGACTA 59.901 38.462 0.00 0.00 0.00 2.59
329 330 5.104527 TCAAATCAAGATAACGGGGATGACT 60.105 40.000 0.00 0.00 0.00 3.41
330 331 5.123227 TCAAATCAAGATAACGGGGATGAC 58.877 41.667 0.00 0.00 0.00 3.06
331 332 5.104527 ACTCAAATCAAGATAACGGGGATGA 60.105 40.000 0.00 0.00 0.00 2.92
332 333 5.126067 ACTCAAATCAAGATAACGGGGATG 58.874 41.667 0.00 0.00 0.00 3.51
333 334 5.373812 ACTCAAATCAAGATAACGGGGAT 57.626 39.130 0.00 0.00 0.00 3.85
334 335 4.837093 ACTCAAATCAAGATAACGGGGA 57.163 40.909 0.00 0.00 0.00 4.81
335 336 5.897377 AAACTCAAATCAAGATAACGGGG 57.103 39.130 0.00 0.00 0.00 5.73
336 337 8.512138 AGTAAAAACTCAAATCAAGATAACGGG 58.488 33.333 0.00 0.00 0.00 5.28
337 338 9.893305 AAGTAAAAACTCAAATCAAGATAACGG 57.107 29.630 0.00 0.00 0.00 4.44
366 367 4.942852 ACTCAAATCAACATCCGCAAAAA 58.057 34.783 0.00 0.00 0.00 1.94
367 368 4.582701 ACTCAAATCAACATCCGCAAAA 57.417 36.364 0.00 0.00 0.00 2.44
368 369 4.582701 AACTCAAATCAACATCCGCAAA 57.417 36.364 0.00 0.00 0.00 3.68
369 370 4.582701 AAACTCAAATCAACATCCGCAA 57.417 36.364 0.00 0.00 0.00 4.85
370 371 4.582701 AAAACTCAAATCAACATCCGCA 57.417 36.364 0.00 0.00 0.00 5.69
371 372 5.918011 TGTAAAAACTCAAATCAACATCCGC 59.082 36.000 0.00 0.00 0.00 5.54
372 373 7.433719 TGTTGTAAAAACTCAAATCAACATCCG 59.566 33.333 0.00 0.00 38.69 4.18
373 374 8.539674 GTGTTGTAAAAACTCAAATCAACATCC 58.460 33.333 10.19 0.00 42.97 3.51
374 375 9.081997 TGTGTTGTAAAAACTCAAATCAACATC 57.918 29.630 10.19 6.14 42.97 3.06
375 376 8.994429 TGTGTTGTAAAAACTCAAATCAACAT 57.006 26.923 10.19 0.00 42.97 2.71
376 377 8.704234 GTTGTGTTGTAAAAACTCAAATCAACA 58.296 29.630 7.14 0.00 40.38 3.33
377 378 8.921670 AGTTGTGTTGTAAAAACTCAAATCAAC 58.078 29.630 7.14 0.00 34.29 3.18
378 379 8.920665 CAGTTGTGTTGTAAAAACTCAAATCAA 58.079 29.630 7.14 0.00 34.29 2.57
379 380 8.300286 TCAGTTGTGTTGTAAAAACTCAAATCA 58.700 29.630 7.14 0.00 34.29 2.57
380 381 8.682128 TCAGTTGTGTTGTAAAAACTCAAATC 57.318 30.769 7.14 0.00 34.29 2.17
385 386 7.915397 ACATCATCAGTTGTGTTGTAAAAACTC 59.085 33.333 0.00 0.00 34.29 3.01
404 405 4.929808 CGCCCATTAGTAGGTTACATCATC 59.070 45.833 0.00 0.00 0.00 2.92
416 417 4.562757 GCCATTAGTGATCGCCCATTAGTA 60.563 45.833 1.76 0.00 0.00 1.82
453 454 7.287810 GTCCCATTTAACATATAACTCCTGGT 58.712 38.462 0.00 0.00 0.00 4.00
455 456 7.445402 CAGGTCCCATTTAACATATAACTCCTG 59.555 40.741 0.00 0.00 0.00 3.86
512 516 6.360947 CAGACAGTTCTATCGTGTATGTATGC 59.639 42.308 0.00 0.00 30.50 3.14
513 517 6.360947 GCAGACAGTTCTATCGTGTATGTATG 59.639 42.308 0.00 0.00 36.12 2.39
516 520 4.673441 GCAGACAGTTCTATCGTGTATGT 58.327 43.478 0.00 0.00 36.12 2.29
561 565 2.281140 TGCACGAAAATGGCATCATG 57.719 45.000 0.00 0.00 33.18 3.07
577 581 4.451150 GCCTCCACCGTCGATGCA 62.451 66.667 0.00 0.00 0.00 3.96
624 628 5.934625 GCAGTCACTGAAAAGAGAAGGAATA 59.065 40.000 9.70 0.00 32.44 1.75
625 629 4.759183 GCAGTCACTGAAAAGAGAAGGAAT 59.241 41.667 9.70 0.00 32.44 3.01
626 630 4.130118 GCAGTCACTGAAAAGAGAAGGAA 58.870 43.478 9.70 0.00 32.44 3.36
627 631 3.733337 GCAGTCACTGAAAAGAGAAGGA 58.267 45.455 9.70 0.00 32.44 3.36
651 659 2.309136 AACCAACCCCTTCTTCCATG 57.691 50.000 0.00 0.00 0.00 3.66
950 978 3.762288 TCGTTTATATAGCAGGCGAGGAT 59.238 43.478 0.00 0.00 0.00 3.24
957 985 3.258372 TGGGAGCTCGTTTATATAGCAGG 59.742 47.826 7.83 0.00 38.75 4.85
960 988 4.238514 CAGTGGGAGCTCGTTTATATAGC 58.761 47.826 7.83 0.00 36.48 2.97
1034 1062 3.061848 CGGCGGCCCATCTTTGTT 61.062 61.111 14.55 0.00 0.00 2.83
1068 1100 2.281761 AAACAGCAGGGCACGGAG 60.282 61.111 0.00 0.00 0.00 4.63
1175 1207 1.209990 CCCTGCTTCTTGATGCTCTCT 59.790 52.381 9.36 0.00 0.00 3.10
1229 1261 1.996798 TGTCGACCTTCTTCACCTCT 58.003 50.000 14.12 0.00 0.00 3.69
1391 1423 4.450053 TGCACACATAGCAAGCATGTATA 58.550 39.130 8.89 0.00 39.39 1.47
1394 1426 1.471287 CTGCACACATAGCAAGCATGT 59.529 47.619 0.00 0.00 42.17 3.21
1395 1427 1.741145 TCTGCACACATAGCAAGCATG 59.259 47.619 0.00 0.00 42.17 4.06
1396 1428 2.014857 CTCTGCACACATAGCAAGCAT 58.985 47.619 0.00 0.00 42.17 3.79
1397 1429 1.002315 TCTCTGCACACATAGCAAGCA 59.998 47.619 0.00 0.00 42.17 3.91
1398 1430 1.730501 TCTCTGCACACATAGCAAGC 58.269 50.000 0.00 0.00 42.17 4.01
1399 1431 3.794717 AGATCTCTGCACACATAGCAAG 58.205 45.455 0.00 0.00 42.17 4.01
1401 1433 3.528532 CAAGATCTCTGCACACATAGCA 58.471 45.455 0.00 0.00 40.19 3.49
1402 1434 2.287373 GCAAGATCTCTGCACACATAGC 59.713 50.000 18.90 0.00 0.00 2.97
1403 1435 3.528532 TGCAAGATCTCTGCACACATAG 58.471 45.455 21.22 0.00 33.24 2.23
1404 1436 3.615224 TGCAAGATCTCTGCACACATA 57.385 42.857 21.22 5.38 33.24 2.29
1405 1437 2.484742 TGCAAGATCTCTGCACACAT 57.515 45.000 21.22 0.00 33.24 3.21
1407 1439 5.065602 TGAATTATGCAAGATCTCTGCACAC 59.934 40.000 25.00 17.27 41.61 3.82
1408 1440 5.187687 TGAATTATGCAAGATCTCTGCACA 58.812 37.500 25.00 16.56 41.61 4.57
1409 1441 5.746307 TGAATTATGCAAGATCTCTGCAC 57.254 39.130 25.00 16.49 41.61 4.57
1410 1442 6.954487 AATGAATTATGCAAGATCTCTGCA 57.046 33.333 24.82 24.82 43.04 4.41
1411 1443 8.644318 AAAAATGAATTATGCAAGATCTCTGC 57.356 30.769 17.68 17.68 0.00 4.26
1414 1446 9.798994 ACAGAAAAATGAATTATGCAAGATCTC 57.201 29.630 0.00 0.00 0.00 2.75
1538 1573 0.179089 CCATGACCGAAGCTCCTCAG 60.179 60.000 0.00 0.00 0.00 3.35
1617 1660 2.166007 GCACGCACGCACTTTATTTAG 58.834 47.619 0.00 0.00 0.00 1.85
1631 1674 2.356913 AGCATACACACGCACGCA 60.357 55.556 0.00 0.00 0.00 5.24
1638 1681 3.443037 CTCACTAGCTCAGCATACACAC 58.557 50.000 0.00 0.00 0.00 3.82
1639 1682 2.159184 GCTCACTAGCTCAGCATACACA 60.159 50.000 0.00 0.00 45.85 3.72
1670 1720 6.578944 TGGCAGATTACATTACATTCTACGT 58.421 36.000 0.00 0.00 0.00 3.57
1671 1721 7.360353 CCATGGCAGATTACATTACATTCTACG 60.360 40.741 0.00 0.00 0.00 3.51
1672 1722 7.573843 GCCATGGCAGATTACATTACATTCTAC 60.574 40.741 32.08 0.00 41.49 2.59
1673 1723 6.430925 GCCATGGCAGATTACATTACATTCTA 59.569 38.462 32.08 0.00 41.49 2.10
1675 1725 5.464168 GCCATGGCAGATTACATTACATTC 58.536 41.667 32.08 0.00 41.49 2.67
1734 4792 7.830739 ACTGTTTAGATGGAAGGCTTTTATTG 58.169 34.615 0.00 0.00 0.00 1.90
1756 4814 4.877823 TGGCTGCATGAAGAATACTAACTG 59.122 41.667 4.31 0.00 0.00 3.16
1766 4824 2.419673 CGTTGTAATGGCTGCATGAAGA 59.580 45.455 4.31 0.00 0.00 2.87
1777 4835 5.046910 AGCAATTTCAGTCGTTGTAATGG 57.953 39.130 0.00 0.00 28.61 3.16
1794 4852 3.897325 TCGCTATCGAATTCGTAGCAAT 58.103 40.909 34.69 23.38 42.90 3.56
1812 4870 1.537202 ACAGAAAAGAACCAGCATCGC 59.463 47.619 0.00 0.00 0.00 4.58
1822 4880 5.645929 GGGGCAAAAGAAAAACAGAAAAGAA 59.354 36.000 0.00 0.00 0.00 2.52
1827 4885 2.159028 CGGGGGCAAAAGAAAAACAGAA 60.159 45.455 0.00 0.00 0.00 3.02
1981 5095 3.498397 AGCAGACACAATAAAGACCAACG 59.502 43.478 0.00 0.00 0.00 4.10
1992 5106 3.510360 ACGACCTAACTAGCAGACACAAT 59.490 43.478 0.00 0.00 0.00 2.71
2087 5202 8.610248 TGAACAAATTAACTCCGTTTATGAGA 57.390 30.769 0.00 0.00 33.95 3.27
2242 5357 1.944709 GTTTGAGTTGGTGCGTTAGGT 59.055 47.619 0.00 0.00 0.00 3.08
2251 5366 2.418060 CGCTTTTTGGGTTTGAGTTGGT 60.418 45.455 0.00 0.00 0.00 3.67
2254 5369 2.159156 GGACGCTTTTTGGGTTTGAGTT 60.159 45.455 0.00 0.00 42.14 3.01
2257 5372 1.135333 GTGGACGCTTTTTGGGTTTGA 59.865 47.619 0.00 0.00 42.14 2.69
2301 5416 3.230134 ACCAAGCACAAATTTGAGCCTA 58.770 40.909 29.34 0.00 44.29 3.93
2315 5430 2.102554 CGTGGACACAAACCAAGCA 58.897 52.632 3.12 0.00 39.22 3.91
2319 5434 2.897846 CCGCGTGGACACAAACCA 60.898 61.111 10.20 0.00 37.49 3.67
2375 5493 3.151710 CGATAGGTGGGGCCGTGA 61.152 66.667 0.00 0.00 43.70 4.35
2410 5528 1.589320 GCCGTGTTTAATACGATCGCA 59.411 47.619 16.60 1.53 43.82 5.10
2414 5532 2.093341 AGGTGGCCGTGTTTAATACGAT 60.093 45.455 15.39 0.00 43.82 3.73
2449 5567 2.362120 GCTTCCAGCCACTGCCAT 60.362 61.111 0.00 0.00 38.69 4.40
2501 5619 0.694444 GGGGAAGTGGATGAGGCCTA 60.694 60.000 4.42 0.00 0.00 3.93
2502 5620 2.003548 GGGGAAGTGGATGAGGCCT 61.004 63.158 3.86 3.86 0.00 5.19
2551 5669 2.709125 TTTGCTGTCGTCGGTGAGGG 62.709 60.000 0.00 0.00 0.00 4.30
2556 5674 1.890510 GGGTTTTGCTGTCGTCGGT 60.891 57.895 0.00 0.00 0.00 4.69
2584 5702 7.309920 TCATTAATTACCCTTGCGAAAGAAAC 58.690 34.615 4.13 0.00 0.00 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.