Multiple sequence alignment - TraesCS2B01G468900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G468900 chr2B 100.000 3345 0 0 1 3345 664484944 664481600 0.000000e+00 6178
1 TraesCS2B01G468900 chr2B 90.328 2926 209 47 472 3345 722518600 722521503 0.000000e+00 3768
2 TraesCS2B01G468900 chr2B 89.130 2631 242 37 728 3342 385895490 385898092 0.000000e+00 3234
3 TraesCS2B01G468900 chr2B 93.238 488 29 4 472 957 719087896 719087411 0.000000e+00 715
4 TraesCS2B01G468900 chr2B 90.574 488 42 4 472 957 385894994 385895479 0.000000e+00 643
5 TraesCS2B01G468900 chr5B 91.175 2901 208 24 472 3345 14239264 14236385 0.000000e+00 3895
6 TraesCS2B01G468900 chr5B 92.563 2649 155 13 723 3345 54186396 54183764 0.000000e+00 3762
7 TraesCS2B01G468900 chr5B 97.484 477 12 0 1 477 25622838 25622362 0.000000e+00 815
8 TraesCS2B01G468900 chr5B 97.679 474 11 0 1 474 573167543 573168016 0.000000e+00 815
9 TraesCS2B01G468900 chr1B 92.226 2740 176 18 633 3345 70012662 70009933 0.000000e+00 3845
10 TraesCS2B01G468900 chr1B 92.906 2650 157 10 722 3345 560405695 560408339 0.000000e+00 3823
11 TraesCS2B01G468900 chr1B 91.026 2641 183 28 474 3086 568908660 568911274 0.000000e+00 3515
12 TraesCS2B01G468900 chr1B 98.089 471 9 0 1 471 79611485 79611955 0.000000e+00 821
13 TraesCS2B01G468900 chr1B 97.877 471 10 0 1 471 531976533 531977003 0.000000e+00 815
14 TraesCS2B01G468900 chr1B 97.877 471 10 0 1 471 531997745 531998215 0.000000e+00 815
15 TraesCS2B01G468900 chr1B 97.877 471 10 0 1 471 644475475 644475005 0.000000e+00 815
16 TraesCS2B01G468900 chr7B 92.679 2650 160 11 723 3345 605406840 605409482 0.000000e+00 3788
17 TraesCS2B01G468900 chr7B 89.549 488 45 6 472 955 90787699 90787214 6.130000e-172 614
18 TraesCS2B01G468900 chr3B 91.088 2648 189 24 728 3345 1090638 1093268 0.000000e+00 3539
19 TraesCS2B01G468900 chr3B 89.010 2475 244 26 880 3345 661692576 661695031 0.000000e+00 3038
20 TraesCS2B01G468900 chr3B 97.881 472 10 0 1 472 417345677 417345206 0.000000e+00 817
21 TraesCS2B01G468900 chr3B 89.804 510 27 5 472 957 17151401 17151909 6.090000e-177 630
22 TraesCS2B01G468900 chrUn 98.089 471 9 0 1 471 77083367 77083837 0.000000e+00 821
23 TraesCS2B01G468900 chr4B 97.877 471 10 0 1 471 474430715 474430245 0.000000e+00 815
24 TraesCS2B01G468900 chr2D 92.213 488 34 4 472 957 28394300 28394785 0.000000e+00 688
25 TraesCS2B01G468900 chr4A 90.020 491 38 8 472 957 658476254 658476738 2.830000e-175 625
26 TraesCS2B01G468900 chr2A 88.309 479 49 7 472 947 731987415 731986941 4.840000e-158 568


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G468900 chr2B 664481600 664484944 3344 True 6178.0 6178 100.000 1 3345 1 chr2B.!!$R1 3344
1 TraesCS2B01G468900 chr2B 722518600 722521503 2903 False 3768.0 3768 90.328 472 3345 1 chr2B.!!$F1 2873
2 TraesCS2B01G468900 chr2B 385894994 385898092 3098 False 1938.5 3234 89.852 472 3342 2 chr2B.!!$F2 2870
3 TraesCS2B01G468900 chr5B 14236385 14239264 2879 True 3895.0 3895 91.175 472 3345 1 chr5B.!!$R1 2873
4 TraesCS2B01G468900 chr5B 54183764 54186396 2632 True 3762.0 3762 92.563 723 3345 1 chr5B.!!$R3 2622
5 TraesCS2B01G468900 chr1B 70009933 70012662 2729 True 3845.0 3845 92.226 633 3345 1 chr1B.!!$R1 2712
6 TraesCS2B01G468900 chr1B 560405695 560408339 2644 False 3823.0 3823 92.906 722 3345 1 chr1B.!!$F4 2623
7 TraesCS2B01G468900 chr1B 568908660 568911274 2614 False 3515.0 3515 91.026 474 3086 1 chr1B.!!$F5 2612
8 TraesCS2B01G468900 chr7B 605406840 605409482 2642 False 3788.0 3788 92.679 723 3345 1 chr7B.!!$F1 2622
9 TraesCS2B01G468900 chr3B 1090638 1093268 2630 False 3539.0 3539 91.088 728 3345 1 chr3B.!!$F1 2617
10 TraesCS2B01G468900 chr3B 661692576 661695031 2455 False 3038.0 3038 89.010 880 3345 1 chr3B.!!$F3 2465
11 TraesCS2B01G468900 chr3B 17151401 17151909 508 False 630.0 630 89.804 472 957 1 chr3B.!!$F2 485

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
83 84 0.039764 ACAGGAGACGAGGGACATGA 59.960 55.0 0.00 0.0 0.0 3.07 F
420 421 0.105039 CATAGTCTTGGAGTCCGGCC 59.895 60.0 4.30 0.0 0.0 6.13 F
457 458 0.186873 TATCCGGACACCCCCTAGTC 59.813 60.0 6.12 0.0 0.0 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1318 1681 1.224315 CATCCCAAGTCCATCGCCA 59.776 57.895 0.00 0.0 0.00 5.69 R
2258 2675 0.030235 GCACGTGACCCTTTTCAACC 59.970 55.000 22.23 0.0 0.00 3.77 R
2432 2854 3.483574 GGTGTTTGAATGCGTCTACGATG 60.484 47.826 6.71 0.0 43.02 3.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.411351 CGGTGTCGAAACCAGCGG 61.411 66.667 24.47 4.26 46.71 5.52
20 21 2.029964 GGTGTCGAAACCAGCGGA 59.970 61.111 20.43 0.00 40.22 5.54
21 22 1.375523 GGTGTCGAAACCAGCGGAT 60.376 57.895 20.43 0.00 40.22 4.18
22 23 1.359459 GGTGTCGAAACCAGCGGATC 61.359 60.000 20.43 0.00 40.22 3.36
23 24 0.389948 GTGTCGAAACCAGCGGATCT 60.390 55.000 0.00 0.00 0.00 2.75
24 25 0.108804 TGTCGAAACCAGCGGATCTC 60.109 55.000 1.50 0.00 0.00 2.75
25 26 1.138883 TCGAAACCAGCGGATCTCG 59.861 57.895 1.50 0.00 42.76 4.04
26 27 1.878522 CGAAACCAGCGGATCTCGG 60.879 63.158 1.50 0.00 39.69 4.63
27 28 1.521681 GAAACCAGCGGATCTCGGG 60.522 63.158 1.50 4.86 39.69 5.14
28 29 2.240162 GAAACCAGCGGATCTCGGGT 62.240 60.000 1.50 5.41 39.69 5.28
29 30 0.974010 AAACCAGCGGATCTCGGGTA 60.974 55.000 9.72 0.00 39.69 3.69
30 31 1.392710 AACCAGCGGATCTCGGGTAG 61.393 60.000 9.72 0.00 39.69 3.18
31 32 2.565645 CCAGCGGATCTCGGGTAGG 61.566 68.421 5.87 0.00 39.69 3.18
32 33 2.203509 AGCGGATCTCGGGTAGGG 60.204 66.667 5.87 0.00 39.69 3.53
33 34 3.303928 GCGGATCTCGGGTAGGGG 61.304 72.222 5.87 0.00 39.69 4.79
34 35 2.600769 CGGATCTCGGGTAGGGGG 60.601 72.222 0.00 0.00 34.75 5.40
35 36 2.613421 GGATCTCGGGTAGGGGGT 59.387 66.667 0.00 0.00 0.00 4.95
36 37 1.533513 GGATCTCGGGTAGGGGGTC 60.534 68.421 0.00 0.00 0.00 4.46
37 38 1.533513 GATCTCGGGTAGGGGGTCC 60.534 68.421 0.00 0.00 0.00 4.46
38 39 3.097429 ATCTCGGGTAGGGGGTCCC 62.097 68.421 0.00 0.00 45.90 4.46
47 48 4.717313 GGGGGTCCCGAACTGTGC 62.717 72.222 0.48 0.00 36.85 4.57
49 50 4.309950 GGGTCCCGAACTGTGCGT 62.310 66.667 7.51 0.00 0.00 5.24
50 51 2.737376 GGTCCCGAACTGTGCGTC 60.737 66.667 7.51 0.00 0.00 5.19
51 52 2.338984 GTCCCGAACTGTGCGTCT 59.661 61.111 7.51 0.00 0.00 4.18
52 53 1.582968 GTCCCGAACTGTGCGTCTA 59.417 57.895 7.51 0.00 0.00 2.59
53 54 0.456312 GTCCCGAACTGTGCGTCTAG 60.456 60.000 7.51 0.00 0.00 2.43
54 55 1.153823 CCCGAACTGTGCGTCTAGG 60.154 63.158 7.51 0.00 0.00 3.02
55 56 1.805945 CCGAACTGTGCGTCTAGGC 60.806 63.158 7.51 0.00 0.00 3.93
56 57 2.152699 CGAACTGTGCGTCTAGGCG 61.153 63.158 13.55 13.55 35.06 5.52
57 58 1.805945 GAACTGTGCGTCTAGGCGG 60.806 63.158 19.86 3.85 35.06 6.13
58 59 2.209064 GAACTGTGCGTCTAGGCGGA 62.209 60.000 19.86 14.02 35.06 5.54
59 60 1.605058 AACTGTGCGTCTAGGCGGAT 61.605 55.000 19.86 0.00 34.24 4.18
60 61 1.589993 CTGTGCGTCTAGGCGGATG 60.590 63.158 19.86 9.25 34.24 3.51
61 62 2.279517 GTGCGTCTAGGCGGATGG 60.280 66.667 19.86 0.00 34.24 3.51
62 63 2.758327 TGCGTCTAGGCGGATGGT 60.758 61.111 19.86 0.00 35.06 3.55
63 64 1.454295 TGCGTCTAGGCGGATGGTA 60.454 57.895 19.86 0.00 35.06 3.25
64 65 1.038681 TGCGTCTAGGCGGATGGTAA 61.039 55.000 19.86 0.00 35.06 2.85
65 66 0.596859 GCGTCTAGGCGGATGGTAAC 60.597 60.000 19.86 0.00 0.00 2.50
77 78 2.971676 TGGTAACAGGAGACGAGGG 58.028 57.895 0.00 0.00 46.17 4.30
78 79 0.406750 TGGTAACAGGAGACGAGGGA 59.593 55.000 0.00 0.00 46.17 4.20
79 80 0.816373 GGTAACAGGAGACGAGGGAC 59.184 60.000 0.00 0.00 0.00 4.46
80 81 1.542492 GTAACAGGAGACGAGGGACA 58.458 55.000 0.00 0.00 0.00 4.02
81 82 2.100989 GTAACAGGAGACGAGGGACAT 58.899 52.381 0.00 0.00 0.00 3.06
82 83 0.898320 AACAGGAGACGAGGGACATG 59.102 55.000 0.00 0.00 0.00 3.21
83 84 0.039764 ACAGGAGACGAGGGACATGA 59.960 55.000 0.00 0.00 0.00 3.07
84 85 1.342474 ACAGGAGACGAGGGACATGAT 60.342 52.381 0.00 0.00 0.00 2.45
85 86 1.068281 CAGGAGACGAGGGACATGATG 59.932 57.143 0.00 0.00 0.00 3.07
86 87 1.115467 GGAGACGAGGGACATGATGT 58.885 55.000 0.00 0.00 0.00 3.06
87 88 1.482593 GGAGACGAGGGACATGATGTT 59.517 52.381 0.00 0.00 0.00 2.71
88 89 2.093447 GGAGACGAGGGACATGATGTTT 60.093 50.000 0.00 0.00 0.00 2.83
89 90 3.600388 GAGACGAGGGACATGATGTTTT 58.400 45.455 0.00 0.00 0.00 2.43
90 91 4.003648 GAGACGAGGGACATGATGTTTTT 58.996 43.478 0.00 0.00 0.00 1.94
91 92 5.160607 AGACGAGGGACATGATGTTTTTA 57.839 39.130 0.00 0.00 0.00 1.52
92 93 4.935808 AGACGAGGGACATGATGTTTTTAC 59.064 41.667 0.00 0.00 0.00 2.01
93 94 4.007659 ACGAGGGACATGATGTTTTTACC 58.992 43.478 0.00 0.00 0.00 2.85
94 95 3.377172 CGAGGGACATGATGTTTTTACCC 59.623 47.826 10.44 10.44 31.54 3.69
95 96 4.340617 GAGGGACATGATGTTTTTACCCA 58.659 43.478 18.20 0.00 33.25 4.51
96 97 4.344104 AGGGACATGATGTTTTTACCCAG 58.656 43.478 18.20 0.00 33.25 4.45
97 98 3.447229 GGGACATGATGTTTTTACCCAGG 59.553 47.826 12.86 0.00 31.68 4.45
98 99 4.086457 GGACATGATGTTTTTACCCAGGT 58.914 43.478 0.00 0.00 0.00 4.00
99 100 4.526650 GGACATGATGTTTTTACCCAGGTT 59.473 41.667 0.00 0.00 0.00 3.50
100 101 5.336451 GGACATGATGTTTTTACCCAGGTTC 60.336 44.000 0.00 0.00 0.00 3.62
101 102 4.217550 ACATGATGTTTTTACCCAGGTTCG 59.782 41.667 0.00 0.00 0.00 3.95
102 103 3.150767 TGATGTTTTTACCCAGGTTCGG 58.849 45.455 0.00 0.00 0.00 4.30
110 111 3.330720 CCAGGTTCGGGCCCTCTT 61.331 66.667 22.43 3.59 0.00 2.85
111 112 2.045926 CAGGTTCGGGCCCTCTTG 60.046 66.667 22.43 12.77 0.00 3.02
112 113 2.203938 AGGTTCGGGCCCTCTTGA 60.204 61.111 22.43 6.61 0.00 3.02
113 114 1.616628 AGGTTCGGGCCCTCTTGAT 60.617 57.895 22.43 0.00 0.00 2.57
114 115 1.452108 GGTTCGGGCCCTCTTGATG 60.452 63.158 22.43 1.43 0.00 3.07
115 116 1.452108 GTTCGGGCCCTCTTGATGG 60.452 63.158 22.43 0.54 0.00 3.51
116 117 1.615124 TTCGGGCCCTCTTGATGGA 60.615 57.895 22.43 3.53 0.00 3.41
117 118 1.626356 TTCGGGCCCTCTTGATGGAG 61.626 60.000 22.43 0.00 0.00 3.86
126 127 3.621558 CCTCTTGATGGAGGTAAAACCC 58.378 50.000 2.65 0.00 45.65 4.11
127 128 3.267031 CCTCTTGATGGAGGTAAAACCCT 59.733 47.826 2.65 0.00 45.65 4.34
128 129 4.473559 CCTCTTGATGGAGGTAAAACCCTA 59.526 45.833 2.65 0.00 45.65 3.53
129 130 5.429130 CTCTTGATGGAGGTAAAACCCTAC 58.571 45.833 0.00 0.00 39.75 3.18
130 131 3.899052 TGATGGAGGTAAAACCCTACG 57.101 47.619 0.00 0.00 38.41 3.51
131 132 3.175594 TGATGGAGGTAAAACCCTACGT 58.824 45.455 0.00 0.00 38.41 3.57
132 133 3.790091 GATGGAGGTAAAACCCTACGTC 58.210 50.000 0.00 0.00 42.79 4.34
133 134 2.680312 GGAGGTAAAACCCTACGTCC 57.320 55.000 0.00 6.71 44.94 4.79
134 135 2.182827 GGAGGTAAAACCCTACGTCCT 58.817 52.381 12.88 0.00 46.43 3.85
135 136 2.093816 GGAGGTAAAACCCTACGTCCTG 60.094 54.545 12.88 0.00 46.43 3.86
136 137 1.277273 AGGTAAAACCCTACGTCCTGC 59.723 52.381 0.00 0.00 39.75 4.85
137 138 1.277273 GGTAAAACCCTACGTCCTGCT 59.723 52.381 0.00 0.00 30.04 4.24
138 139 2.289882 GGTAAAACCCTACGTCCTGCTT 60.290 50.000 0.00 0.00 30.04 3.91
139 140 1.892209 AAAACCCTACGTCCTGCTTG 58.108 50.000 0.00 0.00 0.00 4.01
140 141 1.053424 AAACCCTACGTCCTGCTTGA 58.947 50.000 0.00 0.00 0.00 3.02
141 142 1.276622 AACCCTACGTCCTGCTTGAT 58.723 50.000 0.00 0.00 0.00 2.57
142 143 1.276622 ACCCTACGTCCTGCTTGATT 58.723 50.000 0.00 0.00 0.00 2.57
143 144 2.463752 ACCCTACGTCCTGCTTGATTA 58.536 47.619 0.00 0.00 0.00 1.75
144 145 2.835764 ACCCTACGTCCTGCTTGATTAA 59.164 45.455 0.00 0.00 0.00 1.40
145 146 3.454812 ACCCTACGTCCTGCTTGATTAAT 59.545 43.478 0.00 0.00 0.00 1.40
146 147 4.652421 ACCCTACGTCCTGCTTGATTAATA 59.348 41.667 0.00 0.00 0.00 0.98
147 148 5.307196 ACCCTACGTCCTGCTTGATTAATAT 59.693 40.000 0.00 0.00 0.00 1.28
148 149 6.183361 ACCCTACGTCCTGCTTGATTAATATT 60.183 38.462 0.00 0.00 0.00 1.28
149 150 6.147821 CCCTACGTCCTGCTTGATTAATATTG 59.852 42.308 0.00 0.00 0.00 1.90
150 151 6.929049 CCTACGTCCTGCTTGATTAATATTGA 59.071 38.462 0.00 0.00 0.00 2.57
151 152 7.604164 CCTACGTCCTGCTTGATTAATATTGAT 59.396 37.037 0.00 0.00 0.00 2.57
152 153 7.194607 ACGTCCTGCTTGATTAATATTGATG 57.805 36.000 0.00 0.00 0.00 3.07
153 154 6.992123 ACGTCCTGCTTGATTAATATTGATGA 59.008 34.615 0.00 0.00 0.00 2.92
154 155 7.663081 ACGTCCTGCTTGATTAATATTGATGAT 59.337 33.333 0.00 0.00 0.00 2.45
155 156 7.961283 CGTCCTGCTTGATTAATATTGATGATG 59.039 37.037 0.00 0.00 0.00 3.07
156 157 8.790718 GTCCTGCTTGATTAATATTGATGATGT 58.209 33.333 0.00 0.00 0.00 3.06
157 158 8.789762 TCCTGCTTGATTAATATTGATGATGTG 58.210 33.333 0.00 0.00 0.00 3.21
158 159 8.027189 CCTGCTTGATTAATATTGATGATGTGG 58.973 37.037 0.00 0.00 0.00 4.17
159 160 7.888424 TGCTTGATTAATATTGATGATGTGGG 58.112 34.615 0.00 0.00 0.00 4.61
160 161 7.506599 TGCTTGATTAATATTGATGATGTGGGT 59.493 33.333 0.00 0.00 0.00 4.51
161 162 8.362639 GCTTGATTAATATTGATGATGTGGGTT 58.637 33.333 0.00 0.00 0.00 4.11
164 165 9.859152 TGATTAATATTGATGATGTGGGTTACA 57.141 29.630 0.00 0.00 44.87 2.41
167 168 9.913310 TTAATATTGATGATGTGGGTTACAAGA 57.087 29.630 0.00 0.00 43.77 3.02
168 169 8.455903 AATATTGATGATGTGGGTTACAAGAG 57.544 34.615 0.00 0.00 43.77 2.85
169 170 4.908601 TGATGATGTGGGTTACAAGAGT 57.091 40.909 0.00 0.00 43.77 3.24
170 171 6.367374 TTGATGATGTGGGTTACAAGAGTA 57.633 37.500 0.00 0.00 43.77 2.59
171 172 5.977635 TGATGATGTGGGTTACAAGAGTAG 58.022 41.667 0.00 0.00 43.77 2.57
172 173 5.719563 TGATGATGTGGGTTACAAGAGTAGA 59.280 40.000 0.00 0.00 43.77 2.59
173 174 6.384015 TGATGATGTGGGTTACAAGAGTAGAT 59.616 38.462 0.00 0.00 43.77 1.98
174 175 6.222038 TGATGTGGGTTACAAGAGTAGATC 57.778 41.667 0.00 0.00 43.77 2.75
175 176 5.958380 TGATGTGGGTTACAAGAGTAGATCT 59.042 40.000 0.00 0.00 43.77 2.75
176 177 7.123383 TGATGTGGGTTACAAGAGTAGATCTA 58.877 38.462 0.00 0.00 43.77 1.98
177 178 6.770746 TGTGGGTTACAAGAGTAGATCTAC 57.229 41.667 22.97 22.97 37.23 2.59
178 179 5.655532 TGTGGGTTACAAGAGTAGATCTACC 59.344 44.000 25.93 18.03 37.23 3.18
179 180 5.655532 GTGGGTTACAAGAGTAGATCTACCA 59.344 44.000 25.93 12.21 37.23 3.25
180 181 5.655532 TGGGTTACAAGAGTAGATCTACCAC 59.344 44.000 25.93 20.17 37.23 4.16
181 182 5.655532 GGGTTACAAGAGTAGATCTACCACA 59.344 44.000 25.93 6.26 37.23 4.17
182 183 6.154021 GGGTTACAAGAGTAGATCTACCACAA 59.846 42.308 25.93 11.19 37.23 3.33
183 184 7.259161 GGTTACAAGAGTAGATCTACCACAAG 58.741 42.308 25.93 18.01 37.23 3.16
184 185 7.122353 GGTTACAAGAGTAGATCTACCACAAGA 59.878 40.741 25.93 8.31 37.23 3.02
185 186 8.688151 GTTACAAGAGTAGATCTACCACAAGAT 58.312 37.037 25.93 8.56 37.23 2.40
194 195 2.501723 TCTACCACAAGATCAAGGAGGC 59.498 50.000 0.00 0.00 0.00 4.70
195 196 1.366319 ACCACAAGATCAAGGAGGCT 58.634 50.000 0.00 0.00 0.00 4.58
196 197 2.551270 ACCACAAGATCAAGGAGGCTA 58.449 47.619 0.00 0.00 0.00 3.93
197 198 2.912956 ACCACAAGATCAAGGAGGCTAA 59.087 45.455 0.00 0.00 0.00 3.09
198 199 3.330701 ACCACAAGATCAAGGAGGCTAAA 59.669 43.478 0.00 0.00 0.00 1.85
199 200 3.691609 CCACAAGATCAAGGAGGCTAAAC 59.308 47.826 0.00 0.00 0.00 2.01
200 201 3.691609 CACAAGATCAAGGAGGCTAAACC 59.308 47.826 0.00 0.00 39.61 3.27
201 202 3.282885 CAAGATCAAGGAGGCTAAACCC 58.717 50.000 0.00 0.00 40.58 4.11
202 203 2.852130 AGATCAAGGAGGCTAAACCCT 58.148 47.619 0.00 0.00 40.58 4.34
203 204 4.008916 AGATCAAGGAGGCTAAACCCTA 57.991 45.455 0.00 0.00 40.58 3.53
204 205 3.970640 AGATCAAGGAGGCTAAACCCTAG 59.029 47.826 0.00 0.00 40.58 3.02
205 206 3.484953 TCAAGGAGGCTAAACCCTAGA 57.515 47.619 0.00 0.00 40.58 2.43
206 207 3.798515 TCAAGGAGGCTAAACCCTAGAA 58.201 45.455 0.00 0.00 40.58 2.10
207 208 3.775316 TCAAGGAGGCTAAACCCTAGAAG 59.225 47.826 0.00 0.00 40.58 2.85
208 209 2.120312 AGGAGGCTAAACCCTAGAAGC 58.880 52.381 0.00 0.00 40.58 3.86
209 210 2.120312 GGAGGCTAAACCCTAGAAGCT 58.880 52.381 0.00 0.00 40.58 3.74
210 211 3.052033 AGGAGGCTAAACCCTAGAAGCTA 60.052 47.826 0.00 0.00 40.58 3.32
211 212 3.322541 GGAGGCTAAACCCTAGAAGCTAG 59.677 52.174 0.00 0.00 40.58 3.42
212 213 2.701423 AGGCTAAACCCTAGAAGCTAGC 59.299 50.000 6.62 6.62 40.58 3.42
213 214 2.224329 GGCTAAACCCTAGAAGCTAGCC 60.224 54.545 12.13 13.65 43.27 3.93
214 215 2.701423 GCTAAACCCTAGAAGCTAGCCT 59.299 50.000 12.13 4.79 32.18 4.58
215 216 3.896272 GCTAAACCCTAGAAGCTAGCCTA 59.104 47.826 12.13 5.82 32.18 3.93
216 217 4.528987 GCTAAACCCTAGAAGCTAGCCTAT 59.471 45.833 12.13 0.00 32.18 2.57
217 218 4.965200 AAACCCTAGAAGCTAGCCTATG 57.035 45.455 12.13 3.90 0.00 2.23
218 219 2.896039 ACCCTAGAAGCTAGCCTATGG 58.104 52.381 12.13 14.55 0.00 2.74
219 220 2.180308 ACCCTAGAAGCTAGCCTATGGT 59.820 50.000 12.13 15.16 31.76 3.55
220 221 3.401683 ACCCTAGAAGCTAGCCTATGGTA 59.598 47.826 19.36 2.73 33.87 3.25
221 222 4.046103 ACCCTAGAAGCTAGCCTATGGTAT 59.954 45.833 19.36 4.05 33.87 2.73
222 223 4.404073 CCCTAGAAGCTAGCCTATGGTATG 59.596 50.000 12.13 0.00 0.00 2.39
223 224 5.265191 CCTAGAAGCTAGCCTATGGTATGA 58.735 45.833 12.13 0.00 0.00 2.15
224 225 5.896678 CCTAGAAGCTAGCCTATGGTATGAT 59.103 44.000 12.13 0.00 0.00 2.45
225 226 6.382570 CCTAGAAGCTAGCCTATGGTATGATT 59.617 42.308 12.13 0.00 0.00 2.57
226 227 6.047511 AGAAGCTAGCCTATGGTATGATTG 57.952 41.667 12.13 0.00 0.00 2.67
227 228 5.545723 AGAAGCTAGCCTATGGTATGATTGT 59.454 40.000 12.13 0.00 0.00 2.71
228 229 5.832539 AGCTAGCCTATGGTATGATTGTT 57.167 39.130 12.13 0.00 0.00 2.83
229 230 5.555017 AGCTAGCCTATGGTATGATTGTTG 58.445 41.667 12.13 0.00 0.00 3.33
230 231 5.072329 AGCTAGCCTATGGTATGATTGTTGT 59.928 40.000 12.13 0.00 0.00 3.32
231 232 5.765182 GCTAGCCTATGGTATGATTGTTGTT 59.235 40.000 2.29 0.00 0.00 2.83
232 233 6.073003 GCTAGCCTATGGTATGATTGTTGTTC 60.073 42.308 2.29 0.00 0.00 3.18
233 234 4.816385 AGCCTATGGTATGATTGTTGTTCG 59.184 41.667 0.00 0.00 0.00 3.95
234 235 4.574828 GCCTATGGTATGATTGTTGTTCGT 59.425 41.667 0.00 0.00 0.00 3.85
235 236 5.277345 GCCTATGGTATGATTGTTGTTCGTC 60.277 44.000 0.00 0.00 0.00 4.20
236 237 5.236478 CCTATGGTATGATTGTTGTTCGTCC 59.764 44.000 0.00 0.00 0.00 4.79
237 238 4.280436 TGGTATGATTGTTGTTCGTCCT 57.720 40.909 0.00 0.00 0.00 3.85
238 239 5.408880 TGGTATGATTGTTGTTCGTCCTA 57.591 39.130 0.00 0.00 0.00 2.94
239 240 5.984725 TGGTATGATTGTTGTTCGTCCTAT 58.015 37.500 0.00 0.00 0.00 2.57
240 241 5.815222 TGGTATGATTGTTGTTCGTCCTATG 59.185 40.000 0.00 0.00 0.00 2.23
241 242 5.236478 GGTATGATTGTTGTTCGTCCTATGG 59.764 44.000 0.00 0.00 0.00 2.74
242 243 4.545208 TGATTGTTGTTCGTCCTATGGA 57.455 40.909 0.00 0.00 0.00 3.41
254 255 2.621070 TCCTATGGACTAAGGCCATCC 58.379 52.381 8.48 6.99 44.70 3.51
255 256 1.276421 CCTATGGACTAAGGCCATCCG 59.724 57.143 8.48 2.15 44.70 4.18
256 257 1.276421 CTATGGACTAAGGCCATCCGG 59.724 57.143 8.48 0.00 44.70 5.14
257 258 0.694444 ATGGACTAAGGCCATCCGGT 60.694 55.000 5.01 0.00 42.31 5.28
258 259 0.912487 TGGACTAAGGCCATCCGGTT 60.912 55.000 5.01 0.00 35.06 4.44
259 260 0.255033 GGACTAAGGCCATCCGGTTT 59.745 55.000 5.01 0.00 37.47 3.27
260 261 1.487558 GGACTAAGGCCATCCGGTTTA 59.512 52.381 5.01 0.00 37.47 2.01
261 262 2.105993 GGACTAAGGCCATCCGGTTTAT 59.894 50.000 5.01 0.00 37.47 1.40
262 263 3.325716 GGACTAAGGCCATCCGGTTTATA 59.674 47.826 5.01 0.00 37.47 0.98
263 264 4.019591 GGACTAAGGCCATCCGGTTTATAT 60.020 45.833 5.01 0.00 37.47 0.86
264 265 5.188359 GGACTAAGGCCATCCGGTTTATATA 59.812 44.000 5.01 0.00 37.47 0.86
265 266 6.295719 ACTAAGGCCATCCGGTTTATATAG 57.704 41.667 5.01 0.50 37.47 1.31
266 267 6.021030 ACTAAGGCCATCCGGTTTATATAGA 58.979 40.000 5.01 0.00 37.47 1.98
267 268 4.820894 AGGCCATCCGGTTTATATAGAC 57.179 45.455 5.01 0.00 37.47 2.59
268 269 4.164981 AGGCCATCCGGTTTATATAGACA 58.835 43.478 5.01 0.00 37.47 3.41
269 270 4.020485 AGGCCATCCGGTTTATATAGACAC 60.020 45.833 5.01 0.00 37.47 3.67
270 271 4.251268 GCCATCCGGTTTATATAGACACC 58.749 47.826 0.00 2.59 33.28 4.16
276 277 5.044428 CGGTTTATATAGACACCGGAGAG 57.956 47.826 15.65 0.00 46.92 3.20
277 278 4.082895 CGGTTTATATAGACACCGGAGAGG 60.083 50.000 15.65 0.00 46.92 3.69
278 279 4.220163 GGTTTATATAGACACCGGAGAGGG 59.780 50.000 9.46 0.00 46.96 4.30
279 280 1.926108 ATATAGACACCGGAGAGGGC 58.074 55.000 9.46 0.00 46.96 5.19
280 281 0.851469 TATAGACACCGGAGAGGGCT 59.149 55.000 9.46 4.41 46.96 5.19
281 282 0.851469 ATAGACACCGGAGAGGGCTA 59.149 55.000 9.46 6.85 46.96 3.93
282 283 0.183014 TAGACACCGGAGAGGGCTAG 59.817 60.000 9.46 0.00 46.96 3.42
283 284 2.042843 ACACCGGAGAGGGCTAGG 60.043 66.667 9.46 0.00 46.96 3.02
284 285 2.840102 CACCGGAGAGGGCTAGGG 60.840 72.222 9.46 0.00 46.96 3.53
285 286 3.357082 ACCGGAGAGGGCTAGGGT 61.357 66.667 9.46 0.00 46.96 4.34
286 287 2.041819 CCGGAGAGGGCTAGGGTT 60.042 66.667 0.00 0.00 35.97 4.11
287 288 1.232216 CCGGAGAGGGCTAGGGTTA 59.768 63.158 0.00 0.00 35.97 2.85
288 289 1.114119 CCGGAGAGGGCTAGGGTTAC 61.114 65.000 0.00 0.00 35.97 2.50
289 290 0.396695 CGGAGAGGGCTAGGGTTACA 60.397 60.000 0.00 0.00 0.00 2.41
290 291 1.121378 GGAGAGGGCTAGGGTTACAC 58.879 60.000 0.00 0.00 0.00 2.90
291 292 1.621622 GGAGAGGGCTAGGGTTACACA 60.622 57.143 0.00 0.00 0.00 3.72
292 293 2.185387 GAGAGGGCTAGGGTTACACAA 58.815 52.381 0.00 0.00 0.00 3.33
293 294 2.570302 GAGAGGGCTAGGGTTACACAAA 59.430 50.000 0.00 0.00 0.00 2.83
294 295 2.572104 AGAGGGCTAGGGTTACACAAAG 59.428 50.000 0.00 0.00 0.00 2.77
295 296 2.305052 GAGGGCTAGGGTTACACAAAGT 59.695 50.000 0.00 0.00 0.00 2.66
296 297 2.305052 AGGGCTAGGGTTACACAAAGTC 59.695 50.000 0.00 0.00 0.00 3.01
297 298 2.344025 GGCTAGGGTTACACAAAGTCG 58.656 52.381 0.00 0.00 0.00 4.18
298 299 2.344025 GCTAGGGTTACACAAAGTCGG 58.656 52.381 0.00 0.00 0.00 4.79
299 300 2.289257 GCTAGGGTTACACAAAGTCGGT 60.289 50.000 0.00 0.00 0.00 4.69
300 301 3.804759 GCTAGGGTTACACAAAGTCGGTT 60.805 47.826 0.00 0.00 0.00 4.44
301 302 4.561326 GCTAGGGTTACACAAAGTCGGTTA 60.561 45.833 0.00 0.00 0.00 2.85
302 303 3.732212 AGGGTTACACAAAGTCGGTTAC 58.268 45.455 0.00 0.00 0.00 2.50
303 304 3.134442 AGGGTTACACAAAGTCGGTTACA 59.866 43.478 0.00 0.00 0.00 2.41
304 305 3.876320 GGGTTACACAAAGTCGGTTACAA 59.124 43.478 0.00 0.00 0.00 2.41
305 306 4.516321 GGGTTACACAAAGTCGGTTACAAT 59.484 41.667 0.00 0.00 0.00 2.71
306 307 5.445845 GGTTACACAAAGTCGGTTACAATG 58.554 41.667 0.00 0.00 0.00 2.82
307 308 5.445845 GTTACACAAAGTCGGTTACAATGG 58.554 41.667 0.00 0.00 0.00 3.16
308 309 3.547746 ACACAAAGTCGGTTACAATGGT 58.452 40.909 0.00 0.00 0.00 3.55
309 310 4.706035 ACACAAAGTCGGTTACAATGGTA 58.294 39.130 0.00 0.00 0.00 3.25
310 311 4.753107 ACACAAAGTCGGTTACAATGGTAG 59.247 41.667 0.00 0.00 0.00 3.18
311 312 4.153475 CACAAAGTCGGTTACAATGGTAGG 59.847 45.833 0.00 0.00 0.00 3.18
312 313 4.040706 ACAAAGTCGGTTACAATGGTAGGA 59.959 41.667 0.00 0.00 0.00 2.94
313 314 4.467198 AAGTCGGTTACAATGGTAGGAG 57.533 45.455 0.00 0.00 0.00 3.69
314 315 3.705051 AGTCGGTTACAATGGTAGGAGA 58.295 45.455 0.00 0.00 0.00 3.71
315 316 4.287552 AGTCGGTTACAATGGTAGGAGAT 58.712 43.478 0.00 0.00 0.00 2.75
316 317 4.341520 AGTCGGTTACAATGGTAGGAGATC 59.658 45.833 0.00 0.00 0.00 2.75
317 318 4.341520 GTCGGTTACAATGGTAGGAGATCT 59.658 45.833 0.00 0.00 0.00 2.75
318 319 5.533903 GTCGGTTACAATGGTAGGAGATCTA 59.466 44.000 0.00 0.00 0.00 1.98
319 320 5.533903 TCGGTTACAATGGTAGGAGATCTAC 59.466 44.000 0.00 0.00 45.78 2.59
332 333 8.597662 GTAGGAGATCTACATATCCGTATCTC 57.402 42.308 7.93 0.00 44.22 2.75
333 334 6.597562 AGGAGATCTACATATCCGTATCTCC 58.402 44.000 17.51 17.51 44.22 3.71
334 335 6.158871 AGGAGATCTACATATCCGTATCTCCA 59.841 42.308 23.89 0.00 43.80 3.86
335 336 6.829298 GGAGATCTACATATCCGTATCTCCAA 59.171 42.308 19.41 0.00 42.35 3.53
336 337 7.012894 GGAGATCTACATATCCGTATCTCCAAG 59.987 44.444 19.41 0.00 42.35 3.61
337 338 5.899120 TCTACATATCCGTATCTCCAAGC 57.101 43.478 0.00 0.00 0.00 4.01
338 339 5.571285 TCTACATATCCGTATCTCCAAGCT 58.429 41.667 0.00 0.00 0.00 3.74
339 340 6.010850 TCTACATATCCGTATCTCCAAGCTT 58.989 40.000 0.00 0.00 0.00 3.74
340 341 4.887748 ACATATCCGTATCTCCAAGCTTG 58.112 43.478 19.93 19.93 0.00 4.01
341 342 2.246719 ATCCGTATCTCCAAGCTTGC 57.753 50.000 21.43 5.20 0.00 4.01
342 343 0.178068 TCCGTATCTCCAAGCTTGCC 59.822 55.000 21.43 3.11 0.00 4.52
343 344 0.179000 CCGTATCTCCAAGCTTGCCT 59.821 55.000 21.43 7.17 0.00 4.75
344 345 1.407437 CCGTATCTCCAAGCTTGCCTT 60.407 52.381 21.43 7.68 0.00 4.35
345 346 1.936547 CGTATCTCCAAGCTTGCCTTC 59.063 52.381 21.43 7.56 0.00 3.46
346 347 2.293170 GTATCTCCAAGCTTGCCTTCC 58.707 52.381 21.43 2.96 0.00 3.46
347 348 0.700564 ATCTCCAAGCTTGCCTTCCA 59.299 50.000 21.43 1.33 0.00 3.53
348 349 0.250901 TCTCCAAGCTTGCCTTCCAC 60.251 55.000 21.43 0.00 0.00 4.02
349 350 1.580845 CTCCAAGCTTGCCTTCCACG 61.581 60.000 21.43 4.86 0.00 4.94
350 351 2.256461 CAAGCTTGCCTTCCACGC 59.744 61.111 14.65 0.00 38.87 5.34
351 352 2.985847 AAGCTTGCCTTCCACGCC 60.986 61.111 0.00 0.00 39.36 5.68
352 353 3.790416 AAGCTTGCCTTCCACGCCA 62.790 57.895 0.00 0.00 39.36 5.69
353 354 3.294493 GCTTGCCTTCCACGCCAA 61.294 61.111 0.00 0.00 32.93 4.52
354 355 2.956987 CTTGCCTTCCACGCCAAG 59.043 61.111 0.00 0.00 0.00 3.61
355 356 2.597217 TTGCCTTCCACGCCAAGG 60.597 61.111 3.73 3.73 43.13 3.61
356 357 4.659172 TGCCTTCCACGCCAAGGG 62.659 66.667 9.12 0.00 40.89 3.95
357 358 4.344865 GCCTTCCACGCCAAGGGA 62.345 66.667 9.12 0.00 40.89 4.20
358 359 2.434331 CCTTCCACGCCAAGGGAA 59.566 61.111 0.00 0.00 40.75 3.97
360 361 3.246687 TTCCACGCCAAGGGAAGT 58.753 55.556 0.00 0.00 38.23 3.01
361 362 1.072505 TTCCACGCCAAGGGAAGTC 59.927 57.895 0.00 0.00 38.23 3.01
362 363 2.359975 CCACGCCAAGGGAAGTCC 60.360 66.667 0.00 0.00 0.00 3.85
402 403 7.837863 ACGGAGTCTTTAATCTTGTATCTTCA 58.162 34.615 0.00 0.00 29.74 3.02
403 404 8.478877 ACGGAGTCTTTAATCTTGTATCTTCAT 58.521 33.333 0.00 0.00 29.74 2.57
404 405 9.967346 CGGAGTCTTTAATCTTGTATCTTCATA 57.033 33.333 0.00 0.00 0.00 2.15
414 415 7.962995 TCTTGTATCTTCATAGTCTTGGAGT 57.037 36.000 0.00 0.00 0.00 3.85
415 416 8.001881 TCTTGTATCTTCATAGTCTTGGAGTC 57.998 38.462 0.00 0.00 0.00 3.36
416 417 6.716934 TGTATCTTCATAGTCTTGGAGTCC 57.283 41.667 0.73 0.73 0.00 3.85
417 418 4.927978 ATCTTCATAGTCTTGGAGTCCG 57.072 45.455 4.30 0.00 0.00 4.79
418 419 3.024547 TCTTCATAGTCTTGGAGTCCGG 58.975 50.000 4.30 0.00 0.00 5.14
419 420 1.112113 TCATAGTCTTGGAGTCCGGC 58.888 55.000 4.30 0.00 0.00 6.13
420 421 0.105039 CATAGTCTTGGAGTCCGGCC 59.895 60.000 4.30 0.00 0.00 6.13
421 422 1.392710 ATAGTCTTGGAGTCCGGCCG 61.393 60.000 21.04 21.04 0.00 6.13
422 423 2.488771 TAGTCTTGGAGTCCGGCCGA 62.489 60.000 30.73 10.38 0.00 5.54
423 424 2.363795 TCTTGGAGTCCGGCCGAT 60.364 61.111 30.73 12.65 0.00 4.18
424 425 2.202932 CTTGGAGTCCGGCCGATG 60.203 66.667 30.73 11.63 0.00 3.84
425 426 2.682136 TTGGAGTCCGGCCGATGA 60.682 61.111 30.73 14.33 0.00 2.92
426 427 2.032860 CTTGGAGTCCGGCCGATGAT 62.033 60.000 30.73 9.58 0.00 2.45
427 428 2.029666 GGAGTCCGGCCGATGATG 59.970 66.667 30.73 9.82 0.00 3.07
428 429 2.029666 GAGTCCGGCCGATGATGG 59.970 66.667 30.73 8.93 0.00 3.51
429 430 2.764128 AGTCCGGCCGATGATGGT 60.764 61.111 30.73 2.31 0.00 3.55
430 431 1.456892 AGTCCGGCCGATGATGGTA 60.457 57.895 30.73 0.00 0.00 3.25
431 432 1.006102 GTCCGGCCGATGATGGTAG 60.006 63.158 30.73 6.27 0.00 3.18
432 433 1.456892 TCCGGCCGATGATGGTAGT 60.457 57.895 30.73 0.00 0.00 2.73
433 434 1.046472 TCCGGCCGATGATGGTAGTT 61.046 55.000 30.73 0.00 0.00 2.24
434 435 0.600255 CCGGCCGATGATGGTAGTTC 60.600 60.000 30.73 0.00 0.00 3.01
435 436 0.939577 CGGCCGATGATGGTAGTTCG 60.940 60.000 24.07 0.00 0.00 3.95
437 438 2.900528 CCGATGATGGTAGTTCGGC 58.099 57.895 0.00 0.00 43.91 5.54
438 439 0.389391 CCGATGATGGTAGTTCGGCT 59.611 55.000 0.00 0.00 43.91 5.52
439 440 1.611977 CCGATGATGGTAGTTCGGCTA 59.388 52.381 0.00 0.00 43.91 3.93
440 441 2.231478 CCGATGATGGTAGTTCGGCTAT 59.769 50.000 0.00 0.00 43.91 2.97
441 442 3.502920 CGATGATGGTAGTTCGGCTATC 58.497 50.000 0.00 0.00 31.50 2.08
442 443 3.673594 CGATGATGGTAGTTCGGCTATCC 60.674 52.174 0.00 0.00 29.70 2.59
452 453 3.557290 GGCTATCCGGACACCCCC 61.557 72.222 6.12 0.00 0.00 5.40
453 454 2.446036 GCTATCCGGACACCCCCT 60.446 66.667 6.12 0.00 0.00 4.79
454 455 1.152398 GCTATCCGGACACCCCCTA 60.152 63.158 6.12 0.00 0.00 3.53
455 456 1.186267 GCTATCCGGACACCCCCTAG 61.186 65.000 6.12 3.64 0.00 3.02
456 457 0.187851 CTATCCGGACACCCCCTAGT 59.812 60.000 6.12 0.00 0.00 2.57
457 458 0.186873 TATCCGGACACCCCCTAGTC 59.813 60.000 6.12 0.00 0.00 2.59
460 461 2.762875 GGACACCCCCTAGTCCGG 60.763 72.222 0.00 0.00 44.23 5.14
461 462 2.762875 GACACCCCCTAGTCCGGG 60.763 72.222 0.00 5.45 45.70 5.73
468 469 3.017139 CCTAGTCCGGGACTCCCT 58.983 66.667 31.91 12.26 42.40 4.20
469 470 1.152715 CCTAGTCCGGGACTCCCTC 60.153 68.421 31.91 2.12 42.40 4.30
470 471 1.613610 CTAGTCCGGGACTCCCTCA 59.386 63.158 31.91 14.20 42.40 3.86
476 477 1.913762 CGGGACTCCCTCAACTGGT 60.914 63.158 12.62 0.00 42.67 4.00
539 540 7.027161 CAGCCAAAATTGCTAACGTATTTACT 58.973 34.615 0.00 0.00 36.81 2.24
554 555 4.686191 ATTTACTGATGGAGAGGCAGAG 57.314 45.455 0.00 0.00 33.94 3.35
774 969 5.996513 TGCAGTTGCCATGTTTAATGAAATT 59.003 32.000 1.06 0.00 39.51 1.82
837 1056 4.141287 GCATTGTACTACCATTGGGCATA 58.859 43.478 7.78 0.00 37.90 3.14
887 1132 3.623703 AGATGTTATGCAGTTGCCATGA 58.376 40.909 1.06 0.00 41.18 3.07
934 1249 0.953727 TGAACTGCAGTTGCCATGTC 59.046 50.000 35.67 19.84 38.56 3.06
939 1254 4.220693 ACTGCAGTTGCCATGTCTAATA 57.779 40.909 15.25 0.00 41.18 0.98
940 1255 4.588899 ACTGCAGTTGCCATGTCTAATAA 58.411 39.130 15.25 0.00 41.18 1.40
978 1339 9.559958 CCATGATCAAACAAAATGTACTTCTAC 57.440 33.333 0.00 0.00 0.00 2.59
1003 1364 3.885297 GCCATGACAACATAAGGTGCTAT 59.115 43.478 0.00 0.00 35.09 2.97
1049 1412 5.938438 ACAAAAACACACAAAACTTGCAT 57.062 30.435 0.00 0.00 0.00 3.96
1182 1545 4.386711 CGGACAAAGGAAGGAACTACTTT 58.613 43.478 0.00 0.00 43.34 2.66
1288 1651 8.161699 ACTAAAAGTAATGGACATGAACGTTT 57.838 30.769 0.46 12.70 0.00 3.60
1291 1654 5.371115 AGTAATGGACATGAACGTTTTGG 57.629 39.130 0.46 0.00 0.00 3.28
1318 1681 0.755327 GCCCCGCCATTTCATAAGGT 60.755 55.000 0.00 0.00 0.00 3.50
1335 1698 1.224592 GTGGCGATGGACTTGGGAT 59.775 57.895 0.00 0.00 0.00 3.85
1422 1785 3.545124 AACCATGGAAGCCGTGCGA 62.545 57.895 21.47 0.00 39.07 5.10
1425 1788 2.108514 CATGGAAGCCGTGCGACAT 61.109 57.895 0.00 0.00 33.52 3.06
1436 1799 1.657260 CGTGCGACATGTTGTGTTGAG 60.657 52.381 14.64 0.00 43.76 3.02
1505 1868 1.134220 TGCGAGGGTCACAGAAAAACT 60.134 47.619 0.00 0.00 0.00 2.66
1518 1881 4.141482 ACAGAAAAACTCAGGAAGGCACTA 60.141 41.667 0.00 0.00 38.49 2.74
1696 2060 0.251165 CCGTTCCATCACAAAGGGGT 60.251 55.000 0.00 0.00 0.00 4.95
1810 2174 1.338973 GACACTGTGACGTGGTCCTTA 59.661 52.381 15.86 0.00 39.19 2.69
1817 2181 2.029290 GTGACGTGGTCCTTAGTGACAT 60.029 50.000 0.00 0.00 36.97 3.06
2085 2501 5.069914 TCTGCCATGTTACGTATACTGGATT 59.930 40.000 17.33 0.00 0.00 3.01
2173 2589 9.590451 ACTGAAATATGCCATGTTATTTGAAAG 57.410 29.630 9.14 7.33 30.25 2.62
2206 2622 3.504863 GCGTAGATTTCCGTGTTCAGTA 58.495 45.455 0.00 0.00 0.00 2.74
2210 2626 5.403166 CGTAGATTTCCGTGTTCAGTAAACA 59.597 40.000 0.00 0.00 45.60 2.83
2227 2643 8.341903 TCAGTAAACACATTTTAGTCACACATG 58.658 33.333 0.00 0.00 0.00 3.21
2235 2651 8.081633 CACATTTTAGTCACACATGGTGTATTT 58.918 33.333 12.26 0.00 45.65 1.40
2258 2675 4.278170 TGAGTGCAAAACTATGGGAAACAG 59.722 41.667 0.00 0.00 40.07 3.16
2378 2799 7.951530 AGCAAAATAGACAACTGAAAAATGG 57.048 32.000 0.00 0.00 0.00 3.16
2403 2824 6.755141 GCGATAACTTTCACTAACCATGTCTA 59.245 38.462 0.00 0.00 0.00 2.59
2432 2854 7.722795 ACTACATTTGCCATGTTTTAAAACC 57.277 32.000 24.55 12.05 38.11 3.27
2521 2945 7.485418 AAACATAAACGTATCTGTTGTCACA 57.515 32.000 9.45 0.00 32.47 3.58
2766 3191 3.737850 ACTTTCTTGACAGCTTCCTCTG 58.262 45.455 0.00 0.00 39.86 3.35
2808 3239 4.278170 ACCGCTTGTTGAAATCTTCATTCA 59.722 37.500 0.00 0.00 39.84 2.57
2917 3348 4.666512 AGGTATTCCAACATGTGAAAGCT 58.333 39.130 0.00 3.61 35.89 3.74
2957 3389 6.774656 ACAAGAAAAGAATCAGGTGAACTCAT 59.225 34.615 0.00 0.00 0.00 2.90
2964 3397 7.636150 AGAATCAGGTGAACTCATAAAATGG 57.364 36.000 0.00 0.00 0.00 3.16
2969 3402 7.103641 TCAGGTGAACTCATAAAATGGTAGAC 58.896 38.462 0.00 0.00 0.00 2.59
3073 3510 3.202829 ACTTGTTCCCTTGCTTCGTAA 57.797 42.857 0.00 0.00 0.00 3.18
3100 3537 5.106475 GCCACGTACTCAATTGGAAAATGTA 60.106 40.000 5.42 0.00 0.00 2.29
3129 3566 3.057734 GACCTTTGAGTGTTCGTAGTGG 58.942 50.000 0.00 0.00 0.00 4.00
3231 3668 3.096489 TCAAGCACCTCAAAATGTTGC 57.904 42.857 0.00 0.00 34.50 4.17
3252 3689 3.683802 CTTCTTCAGGTCAAGGCAGATT 58.316 45.455 0.00 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.654912 CGCTGGTTTCGACACCGAC 61.655 63.158 15.70 9.17 45.50 4.79
1 2 2.355363 CGCTGGTTTCGACACCGA 60.355 61.111 15.70 4.74 43.96 4.69
2 3 3.411351 CCGCTGGTTTCGACACCG 61.411 66.667 15.70 11.34 40.09 4.94
3 4 1.359459 GATCCGCTGGTTTCGACACC 61.359 60.000 13.99 13.99 37.34 4.16
4 5 0.389948 AGATCCGCTGGTTTCGACAC 60.390 55.000 0.00 0.00 0.00 3.67
5 6 0.108804 GAGATCCGCTGGTTTCGACA 60.109 55.000 0.00 0.00 0.00 4.35
6 7 1.140407 CGAGATCCGCTGGTTTCGAC 61.140 60.000 0.00 0.00 0.00 4.20
7 8 1.138883 CGAGATCCGCTGGTTTCGA 59.861 57.895 0.00 0.00 0.00 3.71
8 9 1.878522 CCGAGATCCGCTGGTTTCG 60.879 63.158 0.00 0.00 36.84 3.46
9 10 1.521681 CCCGAGATCCGCTGGTTTC 60.522 63.158 0.00 0.00 36.84 2.78
10 11 0.974010 TACCCGAGATCCGCTGGTTT 60.974 55.000 4.92 0.00 35.12 3.27
11 12 1.380785 TACCCGAGATCCGCTGGTT 60.381 57.895 4.92 0.00 35.12 3.67
12 13 1.828660 CTACCCGAGATCCGCTGGT 60.829 63.158 4.98 4.98 36.85 4.00
13 14 2.565645 CCTACCCGAGATCCGCTGG 61.566 68.421 0.00 0.00 36.84 4.85
14 15 2.565645 CCCTACCCGAGATCCGCTG 61.566 68.421 0.00 0.00 36.84 5.18
15 16 2.203509 CCCTACCCGAGATCCGCT 60.204 66.667 0.00 0.00 36.84 5.52
16 17 3.303928 CCCCTACCCGAGATCCGC 61.304 72.222 0.00 0.00 36.84 5.54
17 18 2.600769 CCCCCTACCCGAGATCCG 60.601 72.222 0.00 0.00 38.18 4.18
18 19 1.533513 GACCCCCTACCCGAGATCC 60.534 68.421 0.00 0.00 0.00 3.36
19 20 1.533513 GGACCCCCTACCCGAGATC 60.534 68.421 0.00 0.00 0.00 2.75
20 21 2.613421 GGACCCCCTACCCGAGAT 59.387 66.667 0.00 0.00 0.00 2.75
21 22 3.759101 GGGACCCCCTACCCGAGA 61.759 72.222 0.00 0.00 41.34 4.04
25 26 3.085947 GTTCGGGACCCCCTACCC 61.086 72.222 4.46 0.00 42.67 3.69
26 27 2.040114 AGTTCGGGACCCCCTACC 59.960 66.667 4.46 0.00 42.67 3.18
27 28 1.611556 ACAGTTCGGGACCCCCTAC 60.612 63.158 4.46 0.29 42.67 3.18
28 29 1.611261 CACAGTTCGGGACCCCCTA 60.611 63.158 4.46 0.00 42.67 3.53
29 30 2.928396 CACAGTTCGGGACCCCCT 60.928 66.667 4.46 0.00 42.67 4.79
30 31 4.717313 GCACAGTTCGGGACCCCC 62.717 72.222 4.46 0.00 41.09 5.40
32 33 4.309950 ACGCACAGTTCGGGACCC 62.310 66.667 0.00 0.00 0.00 4.46
33 34 1.870055 TAGACGCACAGTTCGGGACC 61.870 60.000 0.00 0.00 0.00 4.46
34 35 0.456312 CTAGACGCACAGTTCGGGAC 60.456 60.000 0.00 0.00 0.00 4.46
35 36 1.592400 CCTAGACGCACAGTTCGGGA 61.592 60.000 0.00 0.00 0.00 5.14
36 37 1.153823 CCTAGACGCACAGTTCGGG 60.154 63.158 0.00 0.00 0.00 5.14
37 38 1.805945 GCCTAGACGCACAGTTCGG 60.806 63.158 0.00 0.00 0.00 4.30
38 39 2.152699 CGCCTAGACGCACAGTTCG 61.153 63.158 0.00 0.00 0.00 3.95
39 40 1.805945 CCGCCTAGACGCACAGTTC 60.806 63.158 0.00 0.00 0.00 3.01
40 41 1.605058 ATCCGCCTAGACGCACAGTT 61.605 55.000 0.00 0.00 0.00 3.16
41 42 2.052690 ATCCGCCTAGACGCACAGT 61.053 57.895 0.00 0.00 0.00 3.55
42 43 1.589993 CATCCGCCTAGACGCACAG 60.590 63.158 0.00 0.00 0.00 3.66
43 44 2.494445 CATCCGCCTAGACGCACA 59.506 61.111 0.00 0.00 0.00 4.57
44 45 1.731433 TACCATCCGCCTAGACGCAC 61.731 60.000 0.00 0.00 0.00 5.34
45 46 1.038681 TTACCATCCGCCTAGACGCA 61.039 55.000 0.00 0.00 0.00 5.24
46 47 0.596859 GTTACCATCCGCCTAGACGC 60.597 60.000 0.00 0.00 0.00 5.19
47 48 0.742505 TGTTACCATCCGCCTAGACG 59.257 55.000 0.00 0.00 0.00 4.18
48 49 1.068741 CCTGTTACCATCCGCCTAGAC 59.931 57.143 0.00 0.00 0.00 2.59
49 50 1.063492 TCCTGTTACCATCCGCCTAGA 60.063 52.381 0.00 0.00 0.00 2.43
50 51 1.341531 CTCCTGTTACCATCCGCCTAG 59.658 57.143 0.00 0.00 0.00 3.02
51 52 1.063492 TCTCCTGTTACCATCCGCCTA 60.063 52.381 0.00 0.00 0.00 3.93
52 53 0.325296 TCTCCTGTTACCATCCGCCT 60.325 55.000 0.00 0.00 0.00 5.52
53 54 0.179081 GTCTCCTGTTACCATCCGCC 60.179 60.000 0.00 0.00 0.00 6.13
54 55 0.527817 CGTCTCCTGTTACCATCCGC 60.528 60.000 0.00 0.00 0.00 5.54
55 56 1.065701 CTCGTCTCCTGTTACCATCCG 59.934 57.143 0.00 0.00 0.00 4.18
56 57 1.409427 CCTCGTCTCCTGTTACCATCC 59.591 57.143 0.00 0.00 0.00 3.51
57 58 1.409427 CCCTCGTCTCCTGTTACCATC 59.591 57.143 0.00 0.00 0.00 3.51
58 59 1.006758 TCCCTCGTCTCCTGTTACCAT 59.993 52.381 0.00 0.00 0.00 3.55
59 60 0.406750 TCCCTCGTCTCCTGTTACCA 59.593 55.000 0.00 0.00 0.00 3.25
60 61 0.816373 GTCCCTCGTCTCCTGTTACC 59.184 60.000 0.00 0.00 0.00 2.85
61 62 1.542492 TGTCCCTCGTCTCCTGTTAC 58.458 55.000 0.00 0.00 0.00 2.50
62 63 2.100197 CATGTCCCTCGTCTCCTGTTA 58.900 52.381 0.00 0.00 0.00 2.41
63 64 0.898320 CATGTCCCTCGTCTCCTGTT 59.102 55.000 0.00 0.00 0.00 3.16
64 65 0.039764 TCATGTCCCTCGTCTCCTGT 59.960 55.000 0.00 0.00 0.00 4.00
65 66 1.068281 CATCATGTCCCTCGTCTCCTG 59.932 57.143 0.00 0.00 0.00 3.86
66 67 1.342474 ACATCATGTCCCTCGTCTCCT 60.342 52.381 0.00 0.00 0.00 3.69
67 68 1.115467 ACATCATGTCCCTCGTCTCC 58.885 55.000 0.00 0.00 0.00 3.71
68 69 2.969628 AACATCATGTCCCTCGTCTC 57.030 50.000 0.00 0.00 0.00 3.36
69 70 3.703001 AAAACATCATGTCCCTCGTCT 57.297 42.857 0.00 0.00 0.00 4.18
70 71 4.094442 GGTAAAAACATCATGTCCCTCGTC 59.906 45.833 0.00 0.00 0.00 4.20
71 72 4.007659 GGTAAAAACATCATGTCCCTCGT 58.992 43.478 0.00 0.00 0.00 4.18
72 73 3.377172 GGGTAAAAACATCATGTCCCTCG 59.623 47.826 4.51 0.00 29.50 4.63
73 74 4.340617 TGGGTAAAAACATCATGTCCCTC 58.659 43.478 11.79 0.00 32.37 4.30
74 75 4.344104 CTGGGTAAAAACATCATGTCCCT 58.656 43.478 11.79 0.00 32.37 4.20
75 76 3.447229 CCTGGGTAAAAACATCATGTCCC 59.553 47.826 4.76 4.76 31.92 4.46
76 77 4.086457 ACCTGGGTAAAAACATCATGTCC 58.914 43.478 0.00 0.00 0.00 4.02
77 78 5.619086 CGAACCTGGGTAAAAACATCATGTC 60.619 44.000 0.00 0.00 0.00 3.06
78 79 4.217550 CGAACCTGGGTAAAAACATCATGT 59.782 41.667 0.00 0.00 0.00 3.21
79 80 4.380444 CCGAACCTGGGTAAAAACATCATG 60.380 45.833 0.00 0.00 0.00 3.07
80 81 3.761752 CCGAACCTGGGTAAAAACATCAT 59.238 43.478 0.00 0.00 0.00 2.45
81 82 3.150767 CCGAACCTGGGTAAAAACATCA 58.849 45.455 0.00 0.00 0.00 3.07
82 83 2.490509 CCCGAACCTGGGTAAAAACATC 59.509 50.000 0.00 0.00 44.76 3.06
83 84 2.521126 CCCGAACCTGGGTAAAAACAT 58.479 47.619 0.00 0.00 44.76 2.71
84 85 1.984066 CCCGAACCTGGGTAAAAACA 58.016 50.000 0.00 0.00 44.76 2.83
93 94 3.330720 AAGAGGGCCCGAACCTGG 61.331 66.667 18.44 0.00 38.79 4.45
94 95 1.915078 ATCAAGAGGGCCCGAACCTG 61.915 60.000 18.44 12.14 38.79 4.00
95 96 1.616628 ATCAAGAGGGCCCGAACCT 60.617 57.895 18.44 9.75 42.18 3.50
96 97 1.452108 CATCAAGAGGGCCCGAACC 60.452 63.158 18.44 7.31 0.00 3.62
97 98 1.452108 CCATCAAGAGGGCCCGAAC 60.452 63.158 18.44 12.45 0.00 3.95
98 99 1.615124 TCCATCAAGAGGGCCCGAA 60.615 57.895 18.44 1.01 31.15 4.30
99 100 2.040442 TCCATCAAGAGGGCCCGA 59.960 61.111 18.44 8.04 31.15 5.14
100 101 2.507944 CTCCATCAAGAGGGCCCG 59.492 66.667 18.44 1.05 31.15 6.13
106 107 4.576330 AGGGTTTTACCTCCATCAAGAG 57.424 45.455 0.00 0.00 38.64 2.85
107 108 4.081309 CGTAGGGTTTTACCTCCATCAAGA 60.081 45.833 0.00 0.00 42.09 3.02
108 109 4.189231 CGTAGGGTTTTACCTCCATCAAG 58.811 47.826 0.00 0.00 42.09 3.02
109 110 3.583966 ACGTAGGGTTTTACCTCCATCAA 59.416 43.478 0.00 0.00 42.09 2.57
110 111 3.175594 ACGTAGGGTTTTACCTCCATCA 58.824 45.455 0.00 0.00 42.09 3.07
111 112 3.431346 GGACGTAGGGTTTTACCTCCATC 60.431 52.174 0.00 0.00 42.09 3.51
112 113 2.502947 GGACGTAGGGTTTTACCTCCAT 59.497 50.000 0.00 0.00 42.09 3.41
113 114 1.901833 GGACGTAGGGTTTTACCTCCA 59.098 52.381 0.00 0.00 42.09 3.86
114 115 2.093816 CAGGACGTAGGGTTTTACCTCC 60.094 54.545 0.00 0.00 42.09 4.30
115 116 2.676176 GCAGGACGTAGGGTTTTACCTC 60.676 54.545 0.00 0.00 42.09 3.85
116 117 1.277273 GCAGGACGTAGGGTTTTACCT 59.723 52.381 0.00 0.00 44.75 3.08
117 118 1.277273 AGCAGGACGTAGGGTTTTACC 59.723 52.381 0.00 0.00 37.60 2.85
118 119 2.740447 CAAGCAGGACGTAGGGTTTTAC 59.260 50.000 0.00 0.00 0.00 2.01
119 120 2.633967 TCAAGCAGGACGTAGGGTTTTA 59.366 45.455 0.00 0.00 0.00 1.52
120 121 1.418637 TCAAGCAGGACGTAGGGTTTT 59.581 47.619 0.00 0.00 0.00 2.43
121 122 1.053424 TCAAGCAGGACGTAGGGTTT 58.947 50.000 0.00 0.00 0.00 3.27
122 123 1.276622 ATCAAGCAGGACGTAGGGTT 58.723 50.000 0.00 0.00 0.00 4.11
123 124 1.276622 AATCAAGCAGGACGTAGGGT 58.723 50.000 0.00 0.00 0.00 4.34
124 125 3.536956 TTAATCAAGCAGGACGTAGGG 57.463 47.619 0.00 0.00 0.00 3.53
125 126 6.929049 TCAATATTAATCAAGCAGGACGTAGG 59.071 38.462 0.00 0.00 0.00 3.18
126 127 7.946655 TCAATATTAATCAAGCAGGACGTAG 57.053 36.000 0.00 0.00 0.00 3.51
127 128 8.147704 TCATCAATATTAATCAAGCAGGACGTA 58.852 33.333 0.00 0.00 0.00 3.57
128 129 6.992123 TCATCAATATTAATCAAGCAGGACGT 59.008 34.615 0.00 0.00 0.00 4.34
129 130 7.425577 TCATCAATATTAATCAAGCAGGACG 57.574 36.000 0.00 0.00 0.00 4.79
130 131 8.790718 ACATCATCAATATTAATCAAGCAGGAC 58.209 33.333 0.00 0.00 0.00 3.85
131 132 8.789762 CACATCATCAATATTAATCAAGCAGGA 58.210 33.333 0.00 0.00 0.00 3.86
132 133 8.027189 CCACATCATCAATATTAATCAAGCAGG 58.973 37.037 0.00 0.00 0.00 4.85
133 134 8.027189 CCCACATCATCAATATTAATCAAGCAG 58.973 37.037 0.00 0.00 0.00 4.24
134 135 7.506599 ACCCACATCATCAATATTAATCAAGCA 59.493 33.333 0.00 0.00 0.00 3.91
135 136 7.889469 ACCCACATCATCAATATTAATCAAGC 58.111 34.615 0.00 0.00 0.00 4.01
138 139 9.859152 TGTAACCCACATCATCAATATTAATCA 57.141 29.630 0.00 0.00 30.04 2.57
141 142 9.913310 TCTTGTAACCCACATCATCAATATTAA 57.087 29.630 0.00 0.00 36.90 1.40
142 143 9.559732 CTCTTGTAACCCACATCATCAATATTA 57.440 33.333 0.00 0.00 36.90 0.98
143 144 8.055181 ACTCTTGTAACCCACATCATCAATATT 58.945 33.333 0.00 0.00 36.90 1.28
144 145 7.577303 ACTCTTGTAACCCACATCATCAATAT 58.423 34.615 0.00 0.00 36.90 1.28
145 146 6.957631 ACTCTTGTAACCCACATCATCAATA 58.042 36.000 0.00 0.00 36.90 1.90
146 147 5.819991 ACTCTTGTAACCCACATCATCAAT 58.180 37.500 0.00 0.00 36.90 2.57
147 148 5.241403 ACTCTTGTAACCCACATCATCAA 57.759 39.130 0.00 0.00 36.90 2.57
148 149 4.908601 ACTCTTGTAACCCACATCATCA 57.091 40.909 0.00 0.00 36.90 3.07
149 150 6.222038 TCTACTCTTGTAACCCACATCATC 57.778 41.667 0.00 0.00 36.90 2.92
150 151 6.613271 AGATCTACTCTTGTAACCCACATCAT 59.387 38.462 0.00 0.00 36.90 2.45
151 152 5.958380 AGATCTACTCTTGTAACCCACATCA 59.042 40.000 0.00 0.00 36.90 3.07
152 153 6.472686 AGATCTACTCTTGTAACCCACATC 57.527 41.667 0.00 0.00 36.90 3.06
153 154 6.324254 GGTAGATCTACTCTTGTAACCCACAT 59.676 42.308 27.68 0.00 35.24 3.21
154 155 5.655532 GGTAGATCTACTCTTGTAACCCACA 59.344 44.000 27.68 0.00 36.36 4.17
155 156 5.655532 TGGTAGATCTACTCTTGTAACCCAC 59.344 44.000 27.68 10.43 36.36 4.61
156 157 5.655532 GTGGTAGATCTACTCTTGTAACCCA 59.344 44.000 27.68 13.51 36.36 4.51
157 158 5.655532 TGTGGTAGATCTACTCTTGTAACCC 59.344 44.000 27.68 11.29 36.36 4.11
158 159 6.770746 TGTGGTAGATCTACTCTTGTAACC 57.229 41.667 27.68 14.27 36.36 2.85
159 160 8.053026 TCTTGTGGTAGATCTACTCTTGTAAC 57.947 38.462 27.68 16.10 36.36 2.50
160 161 8.824756 ATCTTGTGGTAGATCTACTCTTGTAA 57.175 34.615 27.68 15.15 36.36 2.41
161 162 8.053355 TGATCTTGTGGTAGATCTACTCTTGTA 58.947 37.037 27.68 13.27 46.94 2.41
162 163 6.892456 TGATCTTGTGGTAGATCTACTCTTGT 59.108 38.462 27.68 11.58 46.94 3.16
163 164 7.340122 TGATCTTGTGGTAGATCTACTCTTG 57.660 40.000 27.68 16.11 46.94 3.02
164 165 7.069331 CCTTGATCTTGTGGTAGATCTACTCTT 59.931 40.741 27.68 9.80 46.94 2.85
165 166 6.549364 CCTTGATCTTGTGGTAGATCTACTCT 59.451 42.308 27.68 9.36 46.94 3.24
166 167 6.547880 TCCTTGATCTTGTGGTAGATCTACTC 59.452 42.308 27.68 21.22 46.94 2.59
167 168 6.436027 TCCTTGATCTTGTGGTAGATCTACT 58.564 40.000 27.68 10.07 46.94 2.57
168 169 6.239176 CCTCCTTGATCTTGTGGTAGATCTAC 60.239 46.154 22.47 22.47 46.94 2.59
169 170 5.835819 CCTCCTTGATCTTGTGGTAGATCTA 59.164 44.000 13.10 0.00 46.94 1.98
170 171 4.653341 CCTCCTTGATCTTGTGGTAGATCT 59.347 45.833 13.10 0.00 46.94 2.75
171 172 4.742138 GCCTCCTTGATCTTGTGGTAGATC 60.742 50.000 6.67 6.67 46.98 2.75
172 173 3.135530 GCCTCCTTGATCTTGTGGTAGAT 59.864 47.826 0.00 0.00 37.58 1.98
173 174 2.501723 GCCTCCTTGATCTTGTGGTAGA 59.498 50.000 0.00 0.00 0.00 2.59
174 175 2.503356 AGCCTCCTTGATCTTGTGGTAG 59.497 50.000 0.00 0.00 0.00 3.18
175 176 2.551270 AGCCTCCTTGATCTTGTGGTA 58.449 47.619 0.00 0.00 0.00 3.25
176 177 1.366319 AGCCTCCTTGATCTTGTGGT 58.634 50.000 0.00 0.00 0.00 4.16
177 178 3.634397 TTAGCCTCCTTGATCTTGTGG 57.366 47.619 0.00 0.00 0.00 4.17
178 179 3.691609 GGTTTAGCCTCCTTGATCTTGTG 59.308 47.826 0.00 0.00 0.00 3.33
179 180 3.308473 GGGTTTAGCCTCCTTGATCTTGT 60.308 47.826 0.00 0.00 37.43 3.16
180 181 3.054065 AGGGTTTAGCCTCCTTGATCTTG 60.054 47.826 0.00 0.00 37.43 3.02
181 182 3.193782 AGGGTTTAGCCTCCTTGATCTT 58.806 45.455 0.00 0.00 37.43 2.40
182 183 2.852130 AGGGTTTAGCCTCCTTGATCT 58.148 47.619 0.00 0.00 37.43 2.75
183 184 3.967987 TCTAGGGTTTAGCCTCCTTGATC 59.032 47.826 3.32 0.00 37.43 2.92
184 185 4.008916 TCTAGGGTTTAGCCTCCTTGAT 57.991 45.455 3.32 0.00 37.43 2.57
185 186 3.484953 TCTAGGGTTTAGCCTCCTTGA 57.515 47.619 3.32 0.00 37.43 3.02
186 187 3.682999 GCTTCTAGGGTTTAGCCTCCTTG 60.683 52.174 3.32 0.00 37.43 3.61
187 188 2.506231 GCTTCTAGGGTTTAGCCTCCTT 59.494 50.000 3.32 0.00 37.43 3.36
188 189 2.120312 GCTTCTAGGGTTTAGCCTCCT 58.880 52.381 3.32 0.00 37.43 3.69
189 190 2.120312 AGCTTCTAGGGTTTAGCCTCC 58.880 52.381 3.32 0.00 37.43 4.30
190 191 3.243941 GCTAGCTTCTAGGGTTTAGCCTC 60.244 52.174 7.70 0.00 37.43 4.70
191 192 2.701423 GCTAGCTTCTAGGGTTTAGCCT 59.299 50.000 7.70 5.72 37.43 4.58
192 193 2.224329 GGCTAGCTTCTAGGGTTTAGCC 60.224 54.545 15.72 15.56 44.26 3.93
193 194 2.701423 AGGCTAGCTTCTAGGGTTTAGC 59.299 50.000 15.72 0.00 34.32 3.09
194 195 5.046950 CCATAGGCTAGCTTCTAGGGTTTAG 60.047 48.000 18.28 0.00 34.00 1.85
195 196 4.838986 CCATAGGCTAGCTTCTAGGGTTTA 59.161 45.833 18.28 0.00 34.00 2.01
196 197 3.648545 CCATAGGCTAGCTTCTAGGGTTT 59.351 47.826 18.28 0.00 34.00 3.27
197 198 3.243724 CCATAGGCTAGCTTCTAGGGTT 58.756 50.000 18.28 0.00 34.00 4.11
198 199 2.180308 ACCATAGGCTAGCTTCTAGGGT 59.820 50.000 23.48 23.48 43.27 4.34
199 200 2.896039 ACCATAGGCTAGCTTCTAGGG 58.104 52.381 22.47 22.47 41.57 3.53
200 201 5.265191 TCATACCATAGGCTAGCTTCTAGG 58.735 45.833 15.72 12.08 0.00 3.02
201 202 7.093552 ACAATCATACCATAGGCTAGCTTCTAG 60.094 40.741 15.72 3.93 0.00 2.43
202 203 6.726299 ACAATCATACCATAGGCTAGCTTCTA 59.274 38.462 15.72 8.91 0.00 2.10
203 204 5.545723 ACAATCATACCATAGGCTAGCTTCT 59.454 40.000 15.72 6.71 0.00 2.85
204 205 5.799213 ACAATCATACCATAGGCTAGCTTC 58.201 41.667 15.72 0.00 0.00 3.86
205 206 5.832539 ACAATCATACCATAGGCTAGCTT 57.167 39.130 15.72 10.11 0.00 3.74
206 207 5.072329 ACAACAATCATACCATAGGCTAGCT 59.928 40.000 15.72 3.22 0.00 3.32
207 208 5.308825 ACAACAATCATACCATAGGCTAGC 58.691 41.667 6.04 6.04 0.00 3.42
208 209 6.146184 CGAACAACAATCATACCATAGGCTAG 59.854 42.308 0.00 0.00 0.00 3.42
209 210 5.989168 CGAACAACAATCATACCATAGGCTA 59.011 40.000 0.00 0.00 0.00 3.93
210 211 4.816385 CGAACAACAATCATACCATAGGCT 59.184 41.667 0.00 0.00 0.00 4.58
211 212 4.574828 ACGAACAACAATCATACCATAGGC 59.425 41.667 0.00 0.00 0.00 3.93
212 213 5.236478 GGACGAACAACAATCATACCATAGG 59.764 44.000 0.00 0.00 0.00 2.57
213 214 6.049149 AGGACGAACAACAATCATACCATAG 58.951 40.000 0.00 0.00 0.00 2.23
214 215 5.984725 AGGACGAACAACAATCATACCATA 58.015 37.500 0.00 0.00 0.00 2.74
215 216 4.843728 AGGACGAACAACAATCATACCAT 58.156 39.130 0.00 0.00 0.00 3.55
216 217 4.280436 AGGACGAACAACAATCATACCA 57.720 40.909 0.00 0.00 0.00 3.25
217 218 5.236478 CCATAGGACGAACAACAATCATACC 59.764 44.000 0.00 0.00 0.00 2.73
218 219 6.018994 GTCCATAGGACGAACAACAATCATAC 60.019 42.308 0.00 0.00 43.14 2.39
219 220 6.046593 GTCCATAGGACGAACAACAATCATA 58.953 40.000 0.00 0.00 43.14 2.15
220 221 4.876107 GTCCATAGGACGAACAACAATCAT 59.124 41.667 0.00 0.00 43.14 2.45
221 222 4.250464 GTCCATAGGACGAACAACAATCA 58.750 43.478 0.00 0.00 43.14 2.57
222 223 4.859629 GTCCATAGGACGAACAACAATC 57.140 45.455 0.00 0.00 43.14 2.67
234 235 2.621070 GGATGGCCTTAGTCCATAGGA 58.379 52.381 3.32 0.00 43.90 2.94
235 236 1.276421 CGGATGGCCTTAGTCCATAGG 59.724 57.143 3.32 0.00 43.90 2.57
236 237 1.276421 CCGGATGGCCTTAGTCCATAG 59.724 57.143 3.32 0.00 43.90 2.23
237 238 1.348064 CCGGATGGCCTTAGTCCATA 58.652 55.000 3.32 0.00 43.90 2.74
238 239 0.694444 ACCGGATGGCCTTAGTCCAT 60.694 55.000 9.46 0.00 46.35 3.41
239 240 0.912487 AACCGGATGGCCTTAGTCCA 60.912 55.000 9.46 0.00 39.70 4.02
240 241 0.255033 AAACCGGATGGCCTTAGTCC 59.745 55.000 9.46 5.64 39.70 3.85
241 242 2.994186 TAAACCGGATGGCCTTAGTC 57.006 50.000 9.46 0.00 39.70 2.59
242 243 6.021030 TCTATATAAACCGGATGGCCTTAGT 58.979 40.000 9.46 0.00 39.70 2.24
243 244 6.070995 TGTCTATATAAACCGGATGGCCTTAG 60.071 42.308 9.46 1.01 39.70 2.18
244 245 5.781306 TGTCTATATAAACCGGATGGCCTTA 59.219 40.000 9.46 0.00 39.70 2.69
245 246 4.595781 TGTCTATATAAACCGGATGGCCTT 59.404 41.667 9.46 0.00 39.70 4.35
246 247 4.020485 GTGTCTATATAAACCGGATGGCCT 60.020 45.833 9.46 0.00 39.70 5.19
247 248 4.251268 GTGTCTATATAAACCGGATGGCC 58.749 47.826 9.46 0.00 39.70 5.36
248 249 4.251268 GGTGTCTATATAAACCGGATGGC 58.749 47.826 9.46 0.00 39.70 4.40
255 256 4.220163 CCCTCTCCGGTGTCTATATAAACC 59.780 50.000 0.00 0.68 0.00 3.27
256 257 4.321824 GCCCTCTCCGGTGTCTATATAAAC 60.322 50.000 0.00 0.00 0.00 2.01
257 258 3.830755 GCCCTCTCCGGTGTCTATATAAA 59.169 47.826 0.00 0.00 0.00 1.40
258 259 3.075582 AGCCCTCTCCGGTGTCTATATAA 59.924 47.826 0.00 0.00 0.00 0.98
259 260 2.648304 AGCCCTCTCCGGTGTCTATATA 59.352 50.000 0.00 0.00 0.00 0.86
260 261 1.429687 AGCCCTCTCCGGTGTCTATAT 59.570 52.381 0.00 0.00 0.00 0.86
261 262 0.851469 AGCCCTCTCCGGTGTCTATA 59.149 55.000 0.00 0.00 0.00 1.31
262 263 0.851469 TAGCCCTCTCCGGTGTCTAT 59.149 55.000 0.00 0.00 0.00 1.98
263 264 0.183014 CTAGCCCTCTCCGGTGTCTA 59.817 60.000 0.00 0.05 0.00 2.59
264 265 1.076632 CTAGCCCTCTCCGGTGTCT 60.077 63.158 0.00 0.00 0.00 3.41
265 266 2.128507 CCTAGCCCTCTCCGGTGTC 61.129 68.421 0.00 0.00 0.00 3.67
266 267 2.042843 CCTAGCCCTCTCCGGTGT 60.043 66.667 0.00 0.00 0.00 4.16
267 268 2.840102 CCCTAGCCCTCTCCGGTG 60.840 72.222 0.00 0.00 0.00 4.94
268 269 1.587522 TAACCCTAGCCCTCTCCGGT 61.588 60.000 0.00 0.00 0.00 5.28
269 270 1.114119 GTAACCCTAGCCCTCTCCGG 61.114 65.000 0.00 0.00 0.00 5.14
270 271 0.396695 TGTAACCCTAGCCCTCTCCG 60.397 60.000 0.00 0.00 0.00 4.63
271 272 1.121378 GTGTAACCCTAGCCCTCTCC 58.879 60.000 0.00 0.00 0.00 3.71
272 273 1.861982 TGTGTAACCCTAGCCCTCTC 58.138 55.000 0.00 0.00 34.36 3.20
273 274 2.337359 TTGTGTAACCCTAGCCCTCT 57.663 50.000 0.00 0.00 34.36 3.69
274 275 2.305052 ACTTTGTGTAACCCTAGCCCTC 59.695 50.000 0.00 0.00 34.36 4.30
275 276 2.305052 GACTTTGTGTAACCCTAGCCCT 59.695 50.000 0.00 0.00 34.36 5.19
276 277 2.708051 GACTTTGTGTAACCCTAGCCC 58.292 52.381 0.00 0.00 34.36 5.19
277 278 2.344025 CGACTTTGTGTAACCCTAGCC 58.656 52.381 0.00 0.00 34.36 3.93
278 279 2.289257 ACCGACTTTGTGTAACCCTAGC 60.289 50.000 0.00 0.00 34.36 3.42
279 280 3.672767 ACCGACTTTGTGTAACCCTAG 57.327 47.619 0.00 0.00 34.36 3.02
280 281 4.343526 TGTAACCGACTTTGTGTAACCCTA 59.656 41.667 0.00 0.00 34.36 3.53
281 282 3.134442 TGTAACCGACTTTGTGTAACCCT 59.866 43.478 0.00 0.00 34.36 4.34
282 283 3.465871 TGTAACCGACTTTGTGTAACCC 58.534 45.455 0.00 0.00 34.36 4.11
283 284 5.445845 CATTGTAACCGACTTTGTGTAACC 58.554 41.667 0.00 0.00 34.36 2.85
284 285 5.007921 ACCATTGTAACCGACTTTGTGTAAC 59.992 40.000 0.00 0.00 37.35 2.50
285 286 5.124645 ACCATTGTAACCGACTTTGTGTAA 58.875 37.500 0.00 0.00 0.00 2.41
286 287 4.706035 ACCATTGTAACCGACTTTGTGTA 58.294 39.130 0.00 0.00 0.00 2.90
287 288 3.547746 ACCATTGTAACCGACTTTGTGT 58.452 40.909 0.00 0.00 0.00 3.72
288 289 4.153475 CCTACCATTGTAACCGACTTTGTG 59.847 45.833 0.00 0.00 0.00 3.33
289 290 4.040706 TCCTACCATTGTAACCGACTTTGT 59.959 41.667 0.00 0.00 0.00 2.83
290 291 4.571919 TCCTACCATTGTAACCGACTTTG 58.428 43.478 0.00 0.00 0.00 2.77
291 292 4.529377 TCTCCTACCATTGTAACCGACTTT 59.471 41.667 0.00 0.00 0.00 2.66
292 293 4.091549 TCTCCTACCATTGTAACCGACTT 58.908 43.478 0.00 0.00 0.00 3.01
293 294 3.705051 TCTCCTACCATTGTAACCGACT 58.295 45.455 0.00 0.00 0.00 4.18
294 295 4.341520 AGATCTCCTACCATTGTAACCGAC 59.658 45.833 0.00 0.00 0.00 4.79
295 296 4.543689 AGATCTCCTACCATTGTAACCGA 58.456 43.478 0.00 0.00 0.00 4.69
296 297 4.939052 AGATCTCCTACCATTGTAACCG 57.061 45.455 0.00 0.00 0.00 4.44
297 298 6.726490 TGTAGATCTCCTACCATTGTAACC 57.274 41.667 0.00 0.00 45.60 2.85
299 300 9.256228 GGATATGTAGATCTCCTACCATTGTAA 57.744 37.037 0.00 0.00 45.60 2.41
300 301 7.556635 CGGATATGTAGATCTCCTACCATTGTA 59.443 40.741 0.00 0.00 45.60 2.41
301 302 6.378564 CGGATATGTAGATCTCCTACCATTGT 59.621 42.308 0.00 0.00 45.60 2.71
302 303 6.378564 ACGGATATGTAGATCTCCTACCATTG 59.621 42.308 0.00 0.00 45.60 2.82
303 304 6.494952 ACGGATATGTAGATCTCCTACCATT 58.505 40.000 0.00 0.00 45.60 3.16
304 305 6.080969 ACGGATATGTAGATCTCCTACCAT 57.919 41.667 0.00 0.00 45.60 3.55
305 306 5.516059 ACGGATATGTAGATCTCCTACCA 57.484 43.478 0.00 0.00 45.60 3.25
306 307 7.511268 AGATACGGATATGTAGATCTCCTACC 58.489 42.308 0.00 0.00 45.60 3.18
307 308 7.658575 GGAGATACGGATATGTAGATCTCCTAC 59.341 44.444 17.58 1.64 42.32 3.18
308 309 7.347485 TGGAGATACGGATATGTAGATCTCCTA 59.653 40.741 22.69 11.30 44.11 2.94
309 310 6.158871 TGGAGATACGGATATGTAGATCTCCT 59.841 42.308 22.69 0.00 44.11 3.69
310 311 6.358178 TGGAGATACGGATATGTAGATCTCC 58.642 44.000 17.89 17.89 44.08 3.71
311 312 7.468084 GCTTGGAGATACGGATATGTAGATCTC 60.468 44.444 0.00 0.00 33.03 2.75
312 313 6.320164 GCTTGGAGATACGGATATGTAGATCT 59.680 42.308 0.00 0.00 0.00 2.75
313 314 6.320164 AGCTTGGAGATACGGATATGTAGATC 59.680 42.308 0.00 0.00 0.00 2.75
314 315 6.191315 AGCTTGGAGATACGGATATGTAGAT 58.809 40.000 0.00 0.00 0.00 1.98
315 316 5.571285 AGCTTGGAGATACGGATATGTAGA 58.429 41.667 0.00 0.00 0.00 2.59
316 317 5.906113 AGCTTGGAGATACGGATATGTAG 57.094 43.478 0.00 0.00 0.00 2.74
317 318 5.566826 GCAAGCTTGGAGATACGGATATGTA 60.567 44.000 27.10 0.00 0.00 2.29
318 319 4.800914 GCAAGCTTGGAGATACGGATATGT 60.801 45.833 27.10 0.00 0.00 2.29
319 320 3.681897 GCAAGCTTGGAGATACGGATATG 59.318 47.826 27.10 0.00 0.00 1.78
320 321 3.307059 GGCAAGCTTGGAGATACGGATAT 60.307 47.826 27.10 0.00 0.00 1.63
321 322 2.037251 GGCAAGCTTGGAGATACGGATA 59.963 50.000 27.10 0.00 0.00 2.59
322 323 1.202698 GGCAAGCTTGGAGATACGGAT 60.203 52.381 27.10 0.00 0.00 4.18
323 324 0.178068 GGCAAGCTTGGAGATACGGA 59.822 55.000 27.10 0.00 0.00 4.69
324 325 0.179000 AGGCAAGCTTGGAGATACGG 59.821 55.000 27.10 0.00 0.00 4.02
325 326 1.936547 GAAGGCAAGCTTGGAGATACG 59.063 52.381 27.10 0.00 0.00 3.06
326 327 2.293170 GGAAGGCAAGCTTGGAGATAC 58.707 52.381 27.10 9.58 0.00 2.24
327 328 1.915489 TGGAAGGCAAGCTTGGAGATA 59.085 47.619 27.10 0.00 0.00 1.98
328 329 0.700564 TGGAAGGCAAGCTTGGAGAT 59.299 50.000 27.10 0.00 0.00 2.75
329 330 0.250901 GTGGAAGGCAAGCTTGGAGA 60.251 55.000 27.10 0.00 0.00 3.71
330 331 1.580845 CGTGGAAGGCAAGCTTGGAG 61.581 60.000 27.10 3.04 0.00 3.86
331 332 1.600636 CGTGGAAGGCAAGCTTGGA 60.601 57.895 27.10 0.00 0.00 3.53
332 333 2.956987 CGTGGAAGGCAAGCTTGG 59.043 61.111 27.10 9.80 0.00 3.61
341 342 2.434331 TTCCCTTGGCGTGGAAGG 59.566 61.111 0.00 0.00 39.92 3.46
343 344 1.072505 GACTTCCCTTGGCGTGGAA 59.927 57.895 2.77 2.77 38.30 3.53
344 345 2.747686 GACTTCCCTTGGCGTGGA 59.252 61.111 0.00 0.00 0.00 4.02
345 346 2.359975 GGACTTCCCTTGGCGTGG 60.360 66.667 0.00 0.00 0.00 4.94
367 368 4.112341 GACTCCGTCCCGTGTCCG 62.112 72.222 0.00 0.00 0.00 4.79
368 369 1.813728 AAAGACTCCGTCCCGTGTCC 61.814 60.000 0.00 0.00 32.18 4.02
369 370 0.883833 TAAAGACTCCGTCCCGTGTC 59.116 55.000 0.00 0.00 32.18 3.67
370 371 1.331214 TTAAAGACTCCGTCCCGTGT 58.669 50.000 0.00 0.00 32.18 4.49
371 372 2.165845 AGATTAAAGACTCCGTCCCGTG 59.834 50.000 0.00 0.00 32.18 4.94
372 373 2.454538 AGATTAAAGACTCCGTCCCGT 58.545 47.619 0.00 0.00 32.18 5.28
373 374 3.187700 CAAGATTAAAGACTCCGTCCCG 58.812 50.000 0.00 0.00 32.18 5.14
374 375 4.203654 ACAAGATTAAAGACTCCGTCCC 57.796 45.455 0.00 0.00 32.18 4.46
375 376 6.807789 AGATACAAGATTAAAGACTCCGTCC 58.192 40.000 0.00 0.00 32.18 4.79
376 377 7.974501 TGAAGATACAAGATTAAAGACTCCGTC 59.025 37.037 0.00 0.00 0.00 4.79
377 378 7.837863 TGAAGATACAAGATTAAAGACTCCGT 58.162 34.615 0.00 0.00 0.00 4.69
378 379 8.879342 ATGAAGATACAAGATTAAAGACTCCG 57.121 34.615 0.00 0.00 0.00 4.63
388 389 8.986991 ACTCCAAGACTATGAAGATACAAGATT 58.013 33.333 0.00 0.00 0.00 2.40
389 390 8.546083 ACTCCAAGACTATGAAGATACAAGAT 57.454 34.615 0.00 0.00 0.00 2.40
390 391 7.068839 GGACTCCAAGACTATGAAGATACAAGA 59.931 40.741 0.00 0.00 0.00 3.02
391 392 7.206687 GGACTCCAAGACTATGAAGATACAAG 58.793 42.308 0.00 0.00 0.00 3.16
392 393 6.183360 CGGACTCCAAGACTATGAAGATACAA 60.183 42.308 0.00 0.00 0.00 2.41
393 394 5.299531 CGGACTCCAAGACTATGAAGATACA 59.700 44.000 0.00 0.00 0.00 2.29
394 395 5.278561 CCGGACTCCAAGACTATGAAGATAC 60.279 48.000 0.00 0.00 0.00 2.24
395 396 4.827835 CCGGACTCCAAGACTATGAAGATA 59.172 45.833 0.00 0.00 0.00 1.98
396 397 3.639094 CCGGACTCCAAGACTATGAAGAT 59.361 47.826 0.00 0.00 0.00 2.40
397 398 3.024547 CCGGACTCCAAGACTATGAAGA 58.975 50.000 0.00 0.00 0.00 2.87
398 399 2.482142 GCCGGACTCCAAGACTATGAAG 60.482 54.545 5.05 0.00 0.00 3.02
399 400 1.480954 GCCGGACTCCAAGACTATGAA 59.519 52.381 5.05 0.00 0.00 2.57
400 401 1.112113 GCCGGACTCCAAGACTATGA 58.888 55.000 5.05 0.00 0.00 2.15
401 402 0.105039 GGCCGGACTCCAAGACTATG 59.895 60.000 5.05 0.00 0.00 2.23
402 403 1.392710 CGGCCGGACTCCAAGACTAT 61.393 60.000 20.10 0.00 0.00 2.12
403 404 2.050350 CGGCCGGACTCCAAGACTA 61.050 63.158 20.10 0.00 0.00 2.59
404 405 3.382832 CGGCCGGACTCCAAGACT 61.383 66.667 20.10 0.00 0.00 3.24
405 406 2.722201 ATCGGCCGGACTCCAAGAC 61.722 63.158 27.83 0.00 0.00 3.01
406 407 2.363795 ATCGGCCGGACTCCAAGA 60.364 61.111 27.83 1.69 0.00 3.02
407 408 2.032860 ATCATCGGCCGGACTCCAAG 62.033 60.000 27.83 0.99 0.00 3.61
408 409 2.063979 ATCATCGGCCGGACTCCAA 61.064 57.895 27.83 3.54 0.00 3.53
409 410 2.443952 ATCATCGGCCGGACTCCA 60.444 61.111 27.83 4.46 0.00 3.86
410 411 2.029666 CATCATCGGCCGGACTCC 59.970 66.667 27.83 0.00 0.00 3.85
411 412 1.461091 TACCATCATCGGCCGGACTC 61.461 60.000 27.83 0.00 0.00 3.36
412 413 1.456892 TACCATCATCGGCCGGACT 60.457 57.895 27.83 7.73 0.00 3.85
413 414 1.006102 CTACCATCATCGGCCGGAC 60.006 63.158 27.83 0.00 0.00 4.79
414 415 1.046472 AACTACCATCATCGGCCGGA 61.046 55.000 27.83 16.64 0.00 5.14
415 416 0.600255 GAACTACCATCATCGGCCGG 60.600 60.000 27.83 10.69 0.00 6.13
416 417 0.939577 CGAACTACCATCATCGGCCG 60.940 60.000 22.12 22.12 0.00 6.13
417 418 0.600255 CCGAACTACCATCATCGGCC 60.600 60.000 0.00 0.00 46.97 6.13
418 419 2.900528 CCGAACTACCATCATCGGC 58.099 57.895 0.00 0.00 46.97 5.54
420 421 3.502920 GATAGCCGAACTACCATCATCG 58.497 50.000 0.00 0.00 32.32 3.84
421 422 3.851098 GGATAGCCGAACTACCATCATC 58.149 50.000 0.00 0.00 32.32 2.92
422 423 3.963428 GGATAGCCGAACTACCATCAT 57.037 47.619 0.00 0.00 32.32 2.45
435 436 2.668106 TAGGGGGTGTCCGGATAGCC 62.668 65.000 34.24 34.24 39.05 3.93
436 437 1.152398 TAGGGGGTGTCCGGATAGC 60.152 63.158 20.91 20.91 36.01 2.97
437 438 0.187851 ACTAGGGGGTGTCCGGATAG 59.812 60.000 7.81 5.89 36.01 2.08
438 439 0.186873 GACTAGGGGGTGTCCGGATA 59.813 60.000 7.81 0.10 36.01 2.59
439 440 1.075450 GACTAGGGGGTGTCCGGAT 60.075 63.158 7.81 0.00 36.01 4.18
440 441 2.361771 GACTAGGGGGTGTCCGGA 59.638 66.667 0.00 0.00 36.01 5.14
441 442 2.762875 GGACTAGGGGGTGTCCGG 60.763 72.222 0.00 0.00 42.51 5.14
443 444 2.762875 CCGGACTAGGGGGTGTCC 60.763 72.222 0.00 0.00 46.69 4.02
459 460 1.763545 GATACCAGTTGAGGGAGTCCC 59.236 57.143 21.81 21.81 45.90 4.46
460 461 2.432510 CAGATACCAGTTGAGGGAGTCC 59.567 54.545 0.00 0.00 0.00 3.85
461 462 3.366396 TCAGATACCAGTTGAGGGAGTC 58.634 50.000 0.00 0.00 0.00 3.36
462 463 3.370104 CTCAGATACCAGTTGAGGGAGT 58.630 50.000 0.00 0.00 35.75 3.85
463 464 2.102252 GCTCAGATACCAGTTGAGGGAG 59.898 54.545 3.26 0.00 38.94 4.30
464 465 2.111384 GCTCAGATACCAGTTGAGGGA 58.889 52.381 3.26 0.00 38.94 4.20
465 466 2.114616 AGCTCAGATACCAGTTGAGGG 58.885 52.381 3.26 0.00 38.94 4.30
466 467 3.701542 TGTAGCTCAGATACCAGTTGAGG 59.298 47.826 0.00 0.00 38.94 3.86
467 468 4.736168 GCTGTAGCTCAGATACCAGTTGAG 60.736 50.000 14.86 0.00 46.27 3.02
468 469 3.131223 GCTGTAGCTCAGATACCAGTTGA 59.869 47.826 14.86 0.00 46.27 3.18
469 470 3.118992 TGCTGTAGCTCAGATACCAGTTG 60.119 47.826 14.86 0.00 46.27 3.16
470 471 3.099905 TGCTGTAGCTCAGATACCAGTT 58.900 45.455 14.86 0.00 46.27 3.16
476 477 3.448660 TGCTTCTTGCTGTAGCTCAGATA 59.551 43.478 14.86 3.10 46.27 1.98
539 540 1.047596 GCTCCTCTGCCTCTCCATCA 61.048 60.000 0.00 0.00 0.00 3.07
554 555 5.428253 TCTTGTTGGTGTATATCTTGCTCC 58.572 41.667 0.00 0.00 0.00 4.70
704 705 6.425114 GCATATCATGGTTACTCTGTACCAAG 59.575 42.308 0.00 0.00 46.74 3.61
774 969 5.638657 GCATTTCATTAAACATGGCAACTGA 59.361 36.000 0.00 0.00 37.61 3.41
887 1132 4.221262 ACATGGCAACTGCAGTTCATTAAT 59.779 37.500 28.97 14.90 44.36 1.40
978 1339 2.424601 CACCTTATGTTGTCATGGCCAG 59.575 50.000 13.05 3.43 35.70 4.85
1017 1379 9.194271 GTTTTGTGTGTTTTTGTTAAACTCCTA 57.806 29.630 0.00 0.00 0.00 2.94
1049 1412 5.065988 GCACGCTTTATTTCTTCCTGGAATA 59.934 40.000 10.03 0.00 0.00 1.75
1182 1545 2.024176 GGCTTATCGAGGCTTTCACA 57.976 50.000 7.54 0.00 46.86 3.58
1318 1681 1.224315 CATCCCAAGTCCATCGCCA 59.776 57.895 0.00 0.00 0.00 5.69
1422 1785 7.642669 CATAGTTCTTTCTCAACACAACATGT 58.357 34.615 0.00 0.00 46.42 3.21
1425 1788 5.822519 AGCATAGTTCTTTCTCAACACAACA 59.177 36.000 0.00 0.00 0.00 3.33
1436 1799 9.713740 CATCAATTAGTTCAGCATAGTTCTTTC 57.286 33.333 0.00 0.00 0.00 2.62
1505 1868 4.804261 GCTCTCTTTTTAGTGCCTTCCTGA 60.804 45.833 0.00 0.00 31.37 3.86
1696 2060 9.958180 TGATTTGTATCTTATCTCTTTTGGACA 57.042 29.630 0.00 0.00 0.00 4.02
1723 2087 5.302568 TGTGTTTTGCTTGAATCTCCAATCT 59.697 36.000 0.00 0.00 0.00 2.40
1838 2205 9.990360 TCTCCCATTTTTAAAACATTTAGAACC 57.010 29.630 0.00 0.00 0.00 3.62
2085 2501 7.012327 GCAGATTCAGTATAACTAACATGGCAA 59.988 37.037 0.00 0.00 0.00 4.52
2096 2512 3.486108 CGACACGGCAGATTCAGTATAAC 59.514 47.826 0.00 0.00 0.00 1.89
2173 2589 1.240256 ATCTACGCGATGGAGAGTCC 58.760 55.000 15.93 0.00 36.96 3.85
2206 2622 6.463995 ACCATGTGTGACTAAAATGTGTTT 57.536 33.333 0.00 0.00 0.00 2.83
2227 2643 6.092748 CCATAGTTTTGCACTCAAATACACC 58.907 40.000 0.00 0.00 41.37 4.16
2235 2651 4.211125 TGTTTCCCATAGTTTTGCACTCA 58.789 39.130 0.00 0.00 36.88 3.41
2258 2675 0.030235 GCACGTGACCCTTTTCAACC 59.970 55.000 22.23 0.00 0.00 3.77
2298 2716 4.835284 TGGTAGTTTGATCATGTAGCCA 57.165 40.909 0.00 0.35 0.00 4.75
2378 2799 5.581085 AGACATGGTTAGTGAAAGTTATCGC 59.419 40.000 0.00 0.00 0.00 4.58
2432 2854 3.483574 GGTGTTTGAATGCGTCTACGATG 60.484 47.826 6.71 0.00 43.02 3.84
2566 2990 2.159014 GGTGGTGTGTGAGTGACAGTTA 60.159 50.000 0.00 0.00 34.28 2.24
2569 2993 0.177836 TGGTGGTGTGTGAGTGACAG 59.822 55.000 0.00 0.00 34.28 3.51
2766 3191 2.022129 CCGGAGCACGTGACTTCAC 61.022 63.158 22.23 9.37 42.24 3.18
2808 3239 6.916360 AATTTACACATGGAACTGGTTGAT 57.084 33.333 0.00 0.00 0.00 2.57
3073 3510 1.206132 TCCAATTGAGTACGTGGCGAT 59.794 47.619 7.12 0.00 0.00 4.58
3100 3537 4.583871 GAACACTCAAAGGTCCAGATCAT 58.416 43.478 0.00 0.00 0.00 2.45
3129 3566 1.734465 CTCAAAGAGACATGGAACCGC 59.266 52.381 0.00 0.00 0.00 5.68
3169 3606 1.134818 TGCAGACCTTACTACGCATGG 60.135 52.381 0.00 0.00 0.00 3.66
3231 3668 2.847327 TCTGCCTTGACCTGAAGAAG 57.153 50.000 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.