Multiple sequence alignment - TraesCS2B01G468400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G468400 chr2B 100.000 5067 0 0 1 5067 664223313 664218247 0.000000e+00 9358.0
1 TraesCS2B01G468400 chr2D 94.246 3615 155 26 628 4211 556952238 556948646 0.000000e+00 5474.0
2 TraesCS2B01G468400 chr2D 90.855 842 34 21 4207 5024 556948612 556947790 0.000000e+00 1088.0
3 TraesCS2B01G468400 chr2D 85.176 425 28 11 1 408 556954032 556953626 2.200000e-108 403.0
4 TraesCS2B01G468400 chr2D 88.739 222 7 5 405 626 556952517 556952314 6.510000e-64 255.0
5 TraesCS2B01G468400 chr2D 91.150 113 8 2 2506 2618 622392478 622392368 8.790000e-33 152.0
6 TraesCS2B01G468400 chr2A 93.300 3642 175 34 623 4211 696925985 696922360 0.000000e+00 5310.0
7 TraesCS2B01G468400 chr2A 87.753 841 56 23 4207 5025 696922326 696921511 0.000000e+00 939.0
8 TraesCS2B01G468400 chr2A 79.466 487 60 29 1 481 696926798 696926346 4.930000e-80 309.0
9 TraesCS2B01G468400 chr2A 91.818 110 8 1 2509 2618 754108735 754108627 8.790000e-33 152.0
10 TraesCS2B01G468400 chr2A 97.959 49 1 0 5019 5067 412471539 412471587 9.040000e-13 86.1
11 TraesCS2B01G468400 chr7D 98.000 50 1 0 5018 5067 2337862 2337911 2.510000e-13 87.9
12 TraesCS2B01G468400 chr7D 92.982 57 3 1 5011 5067 478908760 478908815 1.170000e-11 82.4
13 TraesCS2B01G468400 chr5B 96.296 54 1 1 5015 5067 598082972 598082919 2.510000e-13 87.9
14 TraesCS2B01G468400 chr7B 97.959 49 1 0 5019 5067 29592261 29592213 9.040000e-13 86.1
15 TraesCS2B01G468400 chr4A 97.959 49 1 0 5019 5067 468214038 468214086 9.040000e-13 86.1
16 TraesCS2B01G468400 chr4A 94.643 56 1 2 5013 5067 610483392 610483338 9.040000e-13 86.1
17 TraesCS2B01G468400 chr3B 97.959 49 1 0 5019 5067 593563692 593563644 9.040000e-13 86.1
18 TraesCS2B01G468400 chr6A 92.982 57 3 1 5012 5067 614164172 614164116 1.170000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G468400 chr2B 664218247 664223313 5066 True 9358 9358 100.000000 1 5067 1 chr2B.!!$R1 5066
1 TraesCS2B01G468400 chr2D 556947790 556954032 6242 True 1805 5474 89.754000 1 5024 4 chr2D.!!$R2 5023
2 TraesCS2B01G468400 chr2A 696921511 696926798 5287 True 2186 5310 86.839667 1 5025 3 chr2A.!!$R2 5024

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
358 382 0.179062 GAGCAGCAGGGACCATACTG 60.179 60.000 1.78 1.78 37.76 2.74 F
992 2377 0.254178 TACCTCCTCCGACTTAGCGT 59.746 55.000 0.00 0.00 0.00 5.07 F
1806 3209 0.329596 GAAGAAGGCCATGGGTCAGT 59.670 55.000 15.13 0.00 0.00 3.41 F
2008 3411 0.391661 GTGGAAGATGAGCTGCGGAA 60.392 55.000 0.00 0.00 0.00 4.30 F
2693 4096 1.003116 GATGCAGCTGACCTAATTGCG 60.003 52.381 20.43 0.00 37.58 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1859 3262 0.035056 CCTCATCGGCCACCTTCTTT 60.035 55.0 2.24 0.00 0.00 2.52 R
2648 4051 0.094216 CTGCAGCATCAAGACGTTCG 59.906 55.0 0.00 0.00 0.00 3.95 R
2735 4138 0.320771 TCAGCGCCTCTGTTTTCTCC 60.321 55.0 2.29 0.00 43.32 3.71 R
2884 4287 0.605083 AGCTGACATCTCGTGCAAGA 59.395 50.0 1.47 1.47 0.00 3.02 R
4186 5616 0.620556 TTTGGTCCTCCTCCATCAGC 59.379 55.0 0.00 0.00 34.75 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 1.837947 TCCGTTTCCCCTTCCGACA 60.838 57.895 0.00 0.00 0.00 4.35
75 80 1.207593 GACACTTGCATGGCACGAC 59.792 57.895 4.44 0.00 38.71 4.34
76 81 1.227943 ACACTTGCATGGCACGACT 60.228 52.632 4.44 0.00 38.71 4.18
77 82 1.208358 CACTTGCATGGCACGACTG 59.792 57.895 4.44 0.00 38.71 3.51
78 83 2.177531 CTTGCATGGCACGACTGC 59.822 61.111 3.89 3.89 38.71 4.40
79 84 3.656243 CTTGCATGGCACGACTGCG 62.656 63.158 6.34 0.00 45.31 5.18
113 118 0.451783 CGTCCTAAATTGCACTGGGC 59.548 55.000 0.00 0.00 45.13 5.36
126 131 2.643551 CACTGGGCGATCACCTAAATT 58.356 47.619 0.00 0.00 0.00 1.82
132 137 3.065371 GGGCGATCACCTAAATTGAACTG 59.935 47.826 0.00 0.00 0.00 3.16
133 138 3.487544 GGCGATCACCTAAATTGAACTGC 60.488 47.826 0.00 0.00 0.00 4.40
134 139 3.487544 GCGATCACCTAAATTGAACTGCC 60.488 47.826 0.00 0.00 0.00 4.85
158 166 1.167851 CACGCATTTGGGTCACTGAT 58.832 50.000 0.00 0.00 39.30 2.90
159 167 1.135603 CACGCATTTGGGTCACTGATG 60.136 52.381 0.00 0.00 39.30 3.07
160 168 1.271325 ACGCATTTGGGTCACTGATGA 60.271 47.619 0.00 0.00 36.39 2.92
162 170 2.440409 GCATTTGGGTCACTGATGAGT 58.560 47.619 0.00 0.00 34.75 3.41
220 244 2.303022 ACTACGCAATAGCATAGGCCAT 59.697 45.455 5.01 0.00 40.67 4.40
222 246 2.699954 ACGCAATAGCATAGGCCATAC 58.300 47.619 5.01 0.00 42.56 2.39
253 277 2.205022 TGTCTCATGAAAAGCTGGGG 57.795 50.000 0.00 0.00 0.00 4.96
257 281 3.573967 GTCTCATGAAAAGCTGGGGAAAA 59.426 43.478 0.00 0.00 0.00 2.29
258 282 4.221482 GTCTCATGAAAAGCTGGGGAAAAT 59.779 41.667 0.00 0.00 0.00 1.82
262 286 7.016072 TCTCATGAAAAGCTGGGGAAAATAAAA 59.984 33.333 0.00 0.00 0.00 1.52
269 293 7.423844 AAGCTGGGGAAAATAAAATAAGAGG 57.576 36.000 0.00 0.00 0.00 3.69
276 300 6.382859 GGGAAAATAAAATAAGAGGAAGCCCA 59.617 38.462 0.00 0.00 33.88 5.36
358 382 0.179062 GAGCAGCAGGGACCATACTG 60.179 60.000 1.78 1.78 37.76 2.74
366 390 3.270877 CAGGGACCATACTGCACTTAAC 58.729 50.000 0.00 0.00 0.00 2.01
368 392 3.007635 GGGACCATACTGCACTTAACAC 58.992 50.000 0.00 0.00 0.00 3.32
369 393 3.307480 GGGACCATACTGCACTTAACACT 60.307 47.826 0.00 0.00 0.00 3.55
370 394 4.081309 GGGACCATACTGCACTTAACACTA 60.081 45.833 0.00 0.00 0.00 2.74
371 395 5.396436 GGGACCATACTGCACTTAACACTAT 60.396 44.000 0.00 0.00 0.00 2.12
372 396 5.753921 GGACCATACTGCACTTAACACTATC 59.246 44.000 0.00 0.00 0.00 2.08
374 398 6.707290 ACCATACTGCACTTAACACTATCAA 58.293 36.000 0.00 0.00 0.00 2.57
376 400 6.258727 CCATACTGCACTTAACACTATCAAGG 59.741 42.308 0.00 0.00 0.00 3.61
377 401 4.579869 ACTGCACTTAACACTATCAAGGG 58.420 43.478 0.00 0.00 0.00 3.95
378 402 3.343617 TGCACTTAACACTATCAAGGGC 58.656 45.455 0.92 0.92 46.59 5.19
379 403 3.009033 TGCACTTAACACTATCAAGGGCT 59.991 43.478 9.01 0.00 46.55 5.19
429 1570 3.447229 AGGCGAATAAAAACAAGGGATGG 59.553 43.478 0.00 0.00 0.00 3.51
487 1628 3.128188 ACGCACACGCACACCAAA 61.128 55.556 0.00 0.00 45.53 3.28
489 1630 2.220887 CGCACACGCACACCAAAAC 61.221 57.895 0.00 0.00 38.40 2.43
490 1631 1.876263 GCACACGCACACCAAAACC 60.876 57.895 0.00 0.00 38.36 3.27
493 1634 0.603569 ACACGCACACCAAAACCAAA 59.396 45.000 0.00 0.00 0.00 3.28
539 1740 0.529992 GCCGCTACGCTTTATGAGGT 60.530 55.000 0.00 0.00 0.00 3.85
540 1741 1.935933 CCGCTACGCTTTATGAGGTT 58.064 50.000 0.00 0.00 0.00 3.50
541 1742 1.859080 CCGCTACGCTTTATGAGGTTC 59.141 52.381 0.00 0.00 0.00 3.62
542 1743 1.859080 CGCTACGCTTTATGAGGTTCC 59.141 52.381 0.00 0.00 0.00 3.62
543 1744 2.737359 CGCTACGCTTTATGAGGTTCCA 60.737 50.000 0.00 0.00 0.00 3.53
544 1745 2.608090 GCTACGCTTTATGAGGTTCCAC 59.392 50.000 0.00 0.00 0.00 4.02
622 1823 2.342279 CGCAACCTCAACCTCGGA 59.658 61.111 0.00 0.00 0.00 4.55
640 2004 6.662663 ACCTCGGAGTACTAATTAAACACTCT 59.337 38.462 15.19 0.00 36.65 3.24
664 2028 0.681733 AACACATCTCACTCCTGCGT 59.318 50.000 0.00 0.00 0.00 5.24
682 2046 0.819259 GTGCTGCCTTGTCCTTCACA 60.819 55.000 0.00 0.00 0.00 3.58
696 2060 1.842562 CTTCACATCACCTCCCTCCAT 59.157 52.381 0.00 0.00 0.00 3.41
697 2061 1.206878 TCACATCACCTCCCTCCATG 58.793 55.000 0.00 0.00 0.00 3.66
777 2144 3.406764 AGAGACACTGATCAAAACCTGC 58.593 45.455 0.00 0.00 0.00 4.85
778 2145 3.072184 AGAGACACTGATCAAAACCTGCT 59.928 43.478 0.00 0.00 0.00 4.24
779 2146 3.817647 GAGACACTGATCAAAACCTGCTT 59.182 43.478 0.00 0.00 0.00 3.91
781 2148 4.646492 AGACACTGATCAAAACCTGCTTTT 59.354 37.500 0.00 0.00 31.77 2.27
782 2149 5.127682 AGACACTGATCAAAACCTGCTTTTT 59.872 36.000 0.00 0.00 28.85 1.94
827 2207 4.893608 TGTCTTCATCGAGTGAAATTCCA 58.106 39.130 10.21 4.26 45.74 3.53
850 2230 4.748798 CCACCTGGCCTCCCCTCT 62.749 72.222 3.32 0.00 0.00 3.69
851 2231 2.612115 CACCTGGCCTCCCCTCTT 60.612 66.667 3.32 0.00 0.00 2.85
853 2233 3.093172 CCTGGCCTCCCCTCTTCC 61.093 72.222 3.32 0.00 0.00 3.46
876 2256 1.768077 CCCCCTCCACTCCTCCATC 60.768 68.421 0.00 0.00 0.00 3.51
932 2312 4.434354 TGCCATAACCGCCCACCC 62.434 66.667 0.00 0.00 0.00 4.61
936 2316 2.044352 ATAACCGCCCACCCAAGC 60.044 61.111 0.00 0.00 0.00 4.01
988 2373 2.092538 CACTCCTACCTCCTCCGACTTA 60.093 54.545 0.00 0.00 0.00 2.24
992 2377 0.254178 TACCTCCTCCGACTTAGCGT 59.746 55.000 0.00 0.00 0.00 5.07
1078 2466 4.349503 TCCACAATGCTGGGCGCT 62.350 61.111 7.64 0.00 40.11 5.92
1095 2483 1.468908 CGCTAGGAGCAAGTGAGTCAG 60.469 57.143 0.00 0.00 42.58 3.51
1135 2523 5.170270 GCATTCTGCAACGATTCTTTTATCG 59.830 40.000 4.63 4.63 46.30 2.92
1248 2642 1.000359 GGATCTTGGTGGTTGGGGG 60.000 63.158 0.00 0.00 0.00 5.40
1280 2674 3.032017 AGTTCTTGATCTGACGGTGTG 57.968 47.619 0.00 0.00 0.00 3.82
1288 2682 1.745232 TCTGACGGTGTGTTTTTGCT 58.255 45.000 0.00 0.00 0.00 3.91
1291 2685 3.690139 TCTGACGGTGTGTTTTTGCTTTA 59.310 39.130 0.00 0.00 0.00 1.85
1641 3035 0.671472 TCCTCTGCTTGTGATGCACG 60.671 55.000 0.00 0.00 37.14 5.34
1677 3080 7.278203 GCTTTTAGTGGAATCTTAGTAGTGGTC 59.722 40.741 0.00 0.00 0.00 4.02
1679 3082 9.537852 TTTTAGTGGAATCTTAGTAGTGGTCTA 57.462 33.333 0.00 0.00 0.00 2.59
1680 3083 9.710818 TTTAGTGGAATCTTAGTAGTGGTCTAT 57.289 33.333 0.00 0.00 0.00 1.98
1685 3088 7.402071 TGGAATCTTAGTAGTGGTCTATTTGGT 59.598 37.037 0.00 0.00 0.00 3.67
1694 3097 4.892934 AGTGGTCTATTTGGTTTGCAGAAA 59.107 37.500 0.00 0.00 0.00 2.52
1697 3100 5.127845 TGGTCTATTTGGTTTGCAGAAACAA 59.872 36.000 7.67 7.67 42.95 2.83
1706 3109 0.827507 TGCAGAAACAAGGGAAGGCC 60.828 55.000 0.00 0.00 0.00 5.19
1806 3209 0.329596 GAAGAAGGCCATGGGTCAGT 59.670 55.000 15.13 0.00 0.00 3.41
1859 3262 4.074526 GAGGAGCTGGAGTGCGCA 62.075 66.667 5.66 5.66 38.13 6.09
1985 3388 1.746787 AGCAATGATGATTCTGCGCAA 59.253 42.857 13.05 0.00 39.80 4.85
2008 3411 0.391661 GTGGAAGATGAGCTGCGGAA 60.392 55.000 0.00 0.00 0.00 4.30
2171 3574 2.032681 AGGGCTTGCGAGGTGAAC 59.967 61.111 2.37 0.00 0.00 3.18
2349 3752 4.322567 AGCTGAGAAGAAGGTGATTGAAC 58.677 43.478 0.00 0.00 0.00 3.18
2417 3820 4.322567 AGAAGGAATGCTCAAAGTCAGAC 58.677 43.478 0.00 0.00 0.00 3.51
2508 3911 5.009010 TCACTCATTTTGAAAGGCAAGTCTC 59.991 40.000 0.00 0.00 37.87 3.36
2648 4051 3.251004 AGGAAGAAATTGACGTGACAAGC 59.749 43.478 0.00 0.00 33.22 4.01
2693 4096 1.003116 GATGCAGCTGACCTAATTGCG 60.003 52.381 20.43 0.00 37.58 4.85
2725 4128 3.611766 GCTAAGGTTGAAGCTACAGGA 57.388 47.619 0.00 0.00 35.80 3.86
2884 4287 2.284995 GGAGGGTCTGGCCTCTGT 60.285 66.667 3.32 0.00 37.43 3.41
2956 4359 1.923204 CAAACAGGAAGAGATCGAGCG 59.077 52.381 0.00 0.00 0.00 5.03
3026 4429 2.368221 GGAGAGCTATGAGGTGATGCTT 59.632 50.000 0.00 0.00 33.83 3.91
3065 4468 4.786425 AGAAAGTTTGCCTCAAGAAGTCT 58.214 39.130 0.00 0.00 0.00 3.24
3098 4501 2.613223 GGAGGCAGAAGCTAAGAACGTT 60.613 50.000 0.00 0.00 41.70 3.99
3164 4567 6.407525 CCATTAGGAAGTCGGAAGAAGAGATT 60.408 42.308 0.00 0.00 38.76 2.40
3212 4615 0.606401 ACTTGGCCGTGGTGAATGAG 60.606 55.000 0.00 0.00 0.00 2.90
3219 4622 2.552315 GCCGTGGTGAATGAGAAAGAAA 59.448 45.455 0.00 0.00 0.00 2.52
3250 4653 1.481363 TGAGCTGCTGGAGAAGATGAG 59.519 52.381 7.01 0.00 0.00 2.90
3326 4729 0.625849 AGACCCGGCAATTGAAGGAT 59.374 50.000 17.82 3.94 0.00 3.24
3407 4810 1.817447 GCAAAGGAATCAGCTGCTTCT 59.183 47.619 25.02 9.96 0.00 2.85
3419 4822 5.417811 TCAGCTGCTTCTGAGAAGATAAAG 58.582 41.667 25.34 15.82 38.11 1.85
3500 4903 1.745489 GAATGGAGGCGGTGTGGAC 60.745 63.158 0.00 0.00 0.00 4.02
3676 5079 3.236816 CAAAGCTAAACAACGGCATCAG 58.763 45.455 0.00 0.00 0.00 2.90
3677 5080 1.453155 AGCTAAACAACGGCATCAGG 58.547 50.000 0.00 0.00 0.00 3.86
3763 5166 5.619625 AAGAGCTCAAATTAGCACAAGAC 57.380 39.130 17.77 0.00 45.30 3.01
3972 5377 5.752892 AGTTCAGTGATGATGATTCATGC 57.247 39.130 3.32 0.00 42.73 4.06
4020 5425 4.601420 TCATACATATGCCCTGGGTAATGT 59.399 41.667 23.68 23.68 33.76 2.71
4098 5526 5.182570 TGAGCAAAGATGATTTGAAGGAGTG 59.817 40.000 4.59 0.00 0.00 3.51
4116 5544 2.770802 AGTGCTATCATGGTGCTCTCTT 59.229 45.455 0.00 0.00 0.00 2.85
4123 5551 4.824479 TCATGGTGCTCTCTTCATGTTA 57.176 40.909 0.00 0.00 38.39 2.41
4135 5563 5.070446 TCTCTTCATGTTACTGTTGACCTGT 59.930 40.000 0.00 0.00 0.00 4.00
4160 5590 3.021695 CACAGAGATGATGGTGGCAATT 58.978 45.455 0.00 0.00 0.00 2.32
4162 5592 2.029623 AGAGATGATGGTGGCAATTGC 58.970 47.619 22.47 22.47 41.14 3.56
4163 5593 1.752498 GAGATGATGGTGGCAATTGCA 59.248 47.619 30.32 14.71 44.36 4.08
4164 5594 2.166870 GAGATGATGGTGGCAATTGCAA 59.833 45.455 30.32 18.83 44.36 4.08
4166 5596 3.199071 AGATGATGGTGGCAATTGCAATT 59.801 39.130 30.32 18.99 44.36 2.32
4167 5597 2.701107 TGATGGTGGCAATTGCAATTG 58.299 42.857 36.80 36.80 46.55 2.32
4168 5598 2.011222 GATGGTGGCAATTGCAATTGG 58.989 47.619 39.29 26.50 44.54 3.16
4169 5599 0.036448 TGGTGGCAATTGCAATTGGG 59.964 50.000 39.29 24.04 44.54 4.12
4170 5600 0.036590 GGTGGCAATTGCAATTGGGT 59.963 50.000 39.29 14.05 44.54 4.51
4186 5616 1.003118 TGGGTAAAGCTGCTGTACCAG 59.997 52.381 37.25 0.00 44.09 4.00
4291 5760 0.037590 CATTTCTCCCAACCACCCGA 59.962 55.000 0.00 0.00 0.00 5.14
4295 5764 3.612247 CTCCCAACCACCCGAGCTG 62.612 68.421 0.00 0.00 0.00 4.24
4328 5798 1.268283 AAGAGGGGAGGCTGCACTAC 61.268 60.000 12.01 5.15 0.00 2.73
4358 5828 4.216731 GCATTATGCATCGTTCATGTGAG 58.783 43.478 12.80 0.00 44.26 3.51
4399 5870 7.154435 TGTAGTACATGTTGGAGTTCTACTC 57.846 40.000 2.30 0.00 44.32 2.59
4400 5871 6.717997 TGTAGTACATGTTGGAGTTCTACTCA 59.282 38.462 2.30 0.00 46.79 3.41
4401 5872 6.026947 AGTACATGTTGGAGTTCTACTCAC 57.973 41.667 2.30 0.78 46.79 3.51
4402 5873 5.775701 AGTACATGTTGGAGTTCTACTCACT 59.224 40.000 2.30 0.00 46.79 3.41
4432 5903 2.270352 TGGTGGAGCGATGAACTTTT 57.730 45.000 0.00 0.00 0.00 2.27
4472 5944 3.638160 GCAAATTATTGGCTCCAGATGGA 59.362 43.478 0.79 0.79 38.25 3.41
4473 5945 4.500375 GCAAATTATTGGCTCCAGATGGAC 60.500 45.833 0.00 0.00 36.81 4.02
4478 5950 1.327690 TGGCTCCAGATGGACGGTAC 61.328 60.000 0.00 0.00 39.78 3.34
4480 5952 0.103208 GCTCCAGATGGACGGTACTG 59.897 60.000 0.00 0.00 39.78 2.74
4481 5953 1.475403 CTCCAGATGGACGGTACTGT 58.525 55.000 7.16 7.16 39.78 3.55
4482 5954 2.651455 CTCCAGATGGACGGTACTGTA 58.349 52.381 7.48 0.00 39.78 2.74
4484 5956 2.025605 TCCAGATGGACGGTACTGTAGT 60.026 50.000 7.48 0.00 39.78 2.73
4485 5957 3.200605 TCCAGATGGACGGTACTGTAGTA 59.799 47.826 7.48 0.00 39.78 1.82
4493 5978 2.507471 ACGGTACTGTAGTAGGGCTAGT 59.493 50.000 5.26 0.00 0.00 2.57
4531 6016 0.322546 CACTCAGTACAAAGGCCCCC 60.323 60.000 0.00 0.00 0.00 5.40
4609 6094 6.667007 TGTGTATGTACAGCAGAATTGATG 57.333 37.500 0.33 0.00 45.98 3.07
4699 6185 3.443037 TGTACATGCAGCACAAAAACAC 58.557 40.909 0.00 0.00 0.00 3.32
4709 6195 1.265905 CACAAAAACACGAGGCCTACC 59.734 52.381 4.42 0.00 0.00 3.18
4714 6200 2.047655 CACGAGGCCTACCGCAAA 60.048 61.111 4.42 0.00 42.76 3.68
4715 6201 1.449601 CACGAGGCCTACCGCAAAT 60.450 57.895 4.42 0.00 42.76 2.32
4784 6277 1.824230 TCACCCAGCATATGCCAAAAC 59.176 47.619 23.96 0.00 43.38 2.43
4808 6301 1.913451 TAAACGGCCAAATGCGTCCG 61.913 55.000 2.24 2.44 46.61 4.79
4821 6314 0.599991 GCGTCCGGTGATGATATGCA 60.600 55.000 0.00 0.00 0.00 3.96
4889 6384 4.202451 TGTTGTCTTGTGAATGGATGGAGA 60.202 41.667 0.00 0.00 0.00 3.71
4894 6389 6.070021 TGTCTTGTGAATGGATGGAGATAAGT 60.070 38.462 0.00 0.00 0.00 2.24
4895 6390 7.125659 TGTCTTGTGAATGGATGGAGATAAGTA 59.874 37.037 0.00 0.00 0.00 2.24
4896 6391 7.987458 GTCTTGTGAATGGATGGAGATAAGTAA 59.013 37.037 0.00 0.00 0.00 2.24
4897 6392 8.206867 TCTTGTGAATGGATGGAGATAAGTAAG 58.793 37.037 0.00 0.00 0.00 2.34
4898 6393 7.675161 TGTGAATGGATGGAGATAAGTAAGA 57.325 36.000 0.00 0.00 0.00 2.10
4899 6394 8.267620 TGTGAATGGATGGAGATAAGTAAGAT 57.732 34.615 0.00 0.00 0.00 2.40
4900 6395 9.379770 TGTGAATGGATGGAGATAAGTAAGATA 57.620 33.333 0.00 0.00 0.00 1.98
5025 6525 5.567823 GCAGGGCTCAATATTCCTACTACTC 60.568 48.000 0.00 0.00 0.00 2.59
5026 6526 5.046950 CAGGGCTCAATATTCCTACTACTCC 60.047 48.000 0.00 0.00 0.00 3.85
5027 6527 4.223255 GGGCTCAATATTCCTACTACTCCC 59.777 50.000 0.00 0.00 0.00 4.30
5028 6528 5.088026 GGCTCAATATTCCTACTACTCCCT 58.912 45.833 0.00 0.00 0.00 4.20
5029 6529 5.186215 GGCTCAATATTCCTACTACTCCCTC 59.814 48.000 0.00 0.00 0.00 4.30
5030 6530 5.186215 GCTCAATATTCCTACTACTCCCTCC 59.814 48.000 0.00 0.00 0.00 4.30
5031 6531 5.322754 TCAATATTCCTACTACTCCCTCCG 58.677 45.833 0.00 0.00 0.00 4.63
5032 6532 5.078256 CAATATTCCTACTACTCCCTCCGT 58.922 45.833 0.00 0.00 0.00 4.69
5033 6533 2.725221 TTCCTACTACTCCCTCCGTC 57.275 55.000 0.00 0.00 0.00 4.79
5034 6534 0.842635 TCCTACTACTCCCTCCGTCC 59.157 60.000 0.00 0.00 0.00 4.79
5035 6535 0.534652 CCTACTACTCCCTCCGTCCG 60.535 65.000 0.00 0.00 0.00 4.79
5036 6536 0.534652 CTACTACTCCCTCCGTCCGG 60.535 65.000 0.00 0.00 0.00 5.14
5037 6537 0.982852 TACTACTCCCTCCGTCCGGA 60.983 60.000 0.00 0.00 42.90 5.14
5038 6538 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
5039 6539 0.467659 CTACTCCCTCCGTCCGGAAT 60.468 60.000 5.23 0.00 44.66 3.01
5040 6540 0.032813 TACTCCCTCCGTCCGGAATT 60.033 55.000 5.23 0.00 44.66 2.17
5041 6541 0.032813 ACTCCCTCCGTCCGGAATTA 60.033 55.000 5.23 0.00 44.66 1.40
5042 6542 0.388294 CTCCCTCCGTCCGGAATTAC 59.612 60.000 5.23 0.00 44.66 1.89
5043 6543 0.032813 TCCCTCCGTCCGGAATTACT 60.033 55.000 5.23 0.00 44.66 2.24
5044 6544 0.828677 CCCTCCGTCCGGAATTACTT 59.171 55.000 5.23 0.00 44.66 2.24
5045 6545 1.472728 CCCTCCGTCCGGAATTACTTG 60.473 57.143 5.23 0.00 44.66 3.16
5046 6546 1.206371 CCTCCGTCCGGAATTACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
5047 6547 2.537401 CTCCGTCCGGAATTACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
5048 6548 1.135315 TCCGTCCGGAATTACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
5049 6549 1.403249 CCGTCCGGAATTACTTGTCGT 60.403 52.381 5.23 0.00 37.50 4.34
5050 6550 2.159393 CCGTCCGGAATTACTTGTCGTA 60.159 50.000 5.23 0.00 37.50 3.43
5051 6551 3.103738 CGTCCGGAATTACTTGTCGTAG 58.896 50.000 5.23 0.00 0.00 3.51
5052 6552 3.181507 CGTCCGGAATTACTTGTCGTAGA 60.182 47.826 5.23 0.00 0.00 2.59
5053 6553 4.672542 CGTCCGGAATTACTTGTCGTAGAA 60.673 45.833 5.23 0.00 39.69 2.10
5054 6554 5.163513 GTCCGGAATTACTTGTCGTAGAAA 58.836 41.667 5.23 0.00 39.69 2.52
5055 6555 5.809051 GTCCGGAATTACTTGTCGTAGAAAT 59.191 40.000 5.23 0.00 39.69 2.17
5056 6556 5.808540 TCCGGAATTACTTGTCGTAGAAATG 59.191 40.000 0.00 0.00 39.69 2.32
5057 6557 5.006358 CCGGAATTACTTGTCGTAGAAATGG 59.994 44.000 0.00 0.00 39.69 3.16
5058 6558 5.808540 CGGAATTACTTGTCGTAGAAATGGA 59.191 40.000 0.00 0.00 39.69 3.41
5059 6559 6.479001 CGGAATTACTTGTCGTAGAAATGGAT 59.521 38.462 0.00 0.00 39.69 3.41
5060 6560 7.516785 CGGAATTACTTGTCGTAGAAATGGATG 60.517 40.741 0.00 0.00 39.69 3.51
5061 6561 7.280205 GGAATTACTTGTCGTAGAAATGGATGT 59.720 37.037 0.00 0.00 39.69 3.06
5062 6562 9.309516 GAATTACTTGTCGTAGAAATGGATGTA 57.690 33.333 0.00 0.00 39.69 2.29
5063 6563 9.832445 AATTACTTGTCGTAGAAATGGATGTAT 57.168 29.630 0.00 0.00 39.69 2.29
5064 6564 8.867112 TTACTTGTCGTAGAAATGGATGTATC 57.133 34.615 0.00 0.00 39.69 2.24
5065 6565 7.113658 ACTTGTCGTAGAAATGGATGTATCT 57.886 36.000 0.00 0.00 39.69 1.98
5066 6566 8.234136 ACTTGTCGTAGAAATGGATGTATCTA 57.766 34.615 0.00 0.00 39.69 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 2.620112 GCAGTCGTGCCATGCAAGT 61.620 57.895 0.00 0.00 44.72 3.16
84 89 4.649310 TTAGGACGCACGCACGCA 62.649 61.111 0.00 0.00 36.19 5.24
85 90 2.235536 AATTTAGGACGCACGCACGC 62.236 55.000 0.00 0.00 36.19 5.34
86 91 0.518355 CAATTTAGGACGCACGCACG 60.518 55.000 0.00 0.00 39.50 5.34
109 114 3.013921 GTTCAATTTAGGTGATCGCCCA 58.986 45.455 21.82 5.33 0.00 5.36
113 118 3.242413 CGGCAGTTCAATTTAGGTGATCG 60.242 47.826 0.00 0.00 0.00 3.69
253 277 8.067751 ACTGGGCTTCCTCTTATTTTATTTTC 57.932 34.615 0.00 0.00 0.00 2.29
257 281 7.182060 TCAAACTGGGCTTCCTCTTATTTTAT 58.818 34.615 0.00 0.00 0.00 1.40
258 282 6.548321 TCAAACTGGGCTTCCTCTTATTTTA 58.452 36.000 0.00 0.00 0.00 1.52
262 286 3.589288 ACTCAAACTGGGCTTCCTCTTAT 59.411 43.478 0.00 0.00 0.00 1.73
358 382 3.610911 AGCCCTTGATAGTGTTAAGTGC 58.389 45.455 0.00 0.00 28.98 4.40
366 390 7.548196 TCGTTATTTTTAGCCCTTGATAGTG 57.452 36.000 0.00 0.00 0.00 2.74
371 395 9.849166 CTTTTTATCGTTATTTTTAGCCCTTGA 57.151 29.630 0.00 0.00 0.00 3.02
372 396 9.849166 TCTTTTTATCGTTATTTTTAGCCCTTG 57.151 29.630 0.00 0.00 0.00 3.61
374 398 9.850628 GTTCTTTTTATCGTTATTTTTAGCCCT 57.149 29.630 0.00 0.00 0.00 5.19
388 412 5.064198 TCGCCTATTGGTGTTCTTTTTATCG 59.936 40.000 6.64 0.00 43.94 2.92
399 423 5.968528 TGTTTTTATTCGCCTATTGGTGT 57.031 34.783 6.64 0.00 43.94 4.16
476 1617 2.457366 TTTTTGGTTTTGGTGTGCGT 57.543 40.000 0.00 0.00 0.00 5.24
493 1634 6.767902 GCCAATTCTTTCCCTCTTTTTCTTTT 59.232 34.615 0.00 0.00 0.00 2.27
497 1638 5.233225 CAGCCAATTCTTTCCCTCTTTTTC 58.767 41.667 0.00 0.00 0.00 2.29
539 1740 8.146053 TCTAATTCTATTCTGTGGAAGTGGAA 57.854 34.615 0.00 0.00 31.90 3.53
540 1741 7.733773 TCTAATTCTATTCTGTGGAAGTGGA 57.266 36.000 0.00 0.00 32.26 4.02
541 1742 7.010552 CGTTCTAATTCTATTCTGTGGAAGTGG 59.989 40.741 0.00 0.00 34.70 4.00
542 1743 7.010552 CCGTTCTAATTCTATTCTGTGGAAGTG 59.989 40.741 0.00 0.00 34.70 3.16
543 1744 7.042335 CCGTTCTAATTCTATTCTGTGGAAGT 58.958 38.462 0.00 0.00 34.70 3.01
544 1745 6.480320 CCCGTTCTAATTCTATTCTGTGGAAG 59.520 42.308 0.00 0.00 34.70 3.46
640 2004 4.507710 GCAGGAGTGAGATGTGTTAATCA 58.492 43.478 0.00 0.00 0.00 2.57
648 2012 1.079543 GCACGCAGGAGTGAGATGT 60.080 57.895 7.36 0.00 44.43 3.06
650 2014 1.217511 CAGCACGCAGGAGTGAGAT 59.782 57.895 7.36 0.00 44.43 2.75
664 2028 0.111061 ATGTGAAGGACAAGGCAGCA 59.889 50.000 0.00 0.00 38.36 4.41
696 2060 3.495331 TGCTGCTTCTGTTTTTATCCCA 58.505 40.909 0.00 0.00 0.00 4.37
697 2061 4.519540 TTGCTGCTTCTGTTTTTATCCC 57.480 40.909 0.00 0.00 0.00 3.85
810 2190 3.002791 GCTGTGGAATTTCACTCGATGA 58.997 45.455 17.76 0.00 38.40 2.92
876 2256 2.539953 CGTCTGCGGCTAGTAGAAGAAG 60.540 54.545 0.00 0.00 43.13 2.85
932 2312 2.291741 GAGGTGGTGTTTTCTCTGCTTG 59.708 50.000 0.00 0.00 0.00 4.01
936 2316 1.545651 GGGGAGGTGGTGTTTTCTCTG 60.546 57.143 0.00 0.00 0.00 3.35
1055 2443 1.379044 CCAGCATTGTGGACTCCCC 60.379 63.158 0.00 0.00 40.44 4.81
1078 2466 0.898320 GGCTGACTCACTTGCTCCTA 59.102 55.000 0.00 0.00 0.00 2.94
1135 2523 5.393461 CCCATCACTCCAAAATAAGAACAGC 60.393 44.000 0.00 0.00 0.00 4.40
1248 2642 0.595095 CAAGAACTTGGCAGCTCCAC 59.405 55.000 6.66 0.00 46.55 4.02
1280 2674 4.870363 TGCTCACCAGATAAAGCAAAAAC 58.130 39.130 0.00 0.00 41.50 2.43
1677 3080 4.990426 CCCTTGTTTCTGCAAACCAAATAG 59.010 41.667 0.00 0.00 41.25 1.73
1679 3082 3.454082 TCCCTTGTTTCTGCAAACCAAAT 59.546 39.130 0.00 0.00 41.25 2.32
1680 3083 2.834549 TCCCTTGTTTCTGCAAACCAAA 59.165 40.909 0.00 0.00 41.25 3.28
1685 3088 1.412343 GCCTTCCCTTGTTTCTGCAAA 59.588 47.619 0.00 0.00 0.00 3.68
1694 3097 1.074951 CTTTCCGGCCTTCCCTTGT 59.925 57.895 0.00 0.00 0.00 3.16
1763 3166 0.036010 CCTCTTGGACGGCATCAAGT 60.036 55.000 7.09 0.00 40.67 3.16
1787 3190 0.329596 ACTGACCCATGGCCTTCTTC 59.670 55.000 6.09 0.00 0.00 2.87
1806 3209 2.158158 TCTCTTCCTCCTTCTCCACCAA 60.158 50.000 0.00 0.00 0.00 3.67
1859 3262 0.035056 CCTCATCGGCCACCTTCTTT 60.035 55.000 2.24 0.00 0.00 2.52
1953 3356 2.823147 ATTGCTCAGCTGCTCCGC 60.823 61.111 9.47 9.35 0.00 5.54
1962 3365 2.602456 GCGCAGAATCATCATTGCTCAG 60.602 50.000 0.30 0.00 34.50 3.35
1985 3388 1.220206 CAGCTCATCTTCCACGCCT 59.780 57.895 0.00 0.00 0.00 5.52
2171 3574 3.186119 GAGGAGCTCGATTTTCTGAGTG 58.814 50.000 7.83 0.00 34.67 3.51
2349 3752 0.182537 TGTTCAACCACACCCTCCAG 59.817 55.000 0.00 0.00 0.00 3.86
2508 3911 7.278135 TCTAATTCTTCCATCACTGAATCCAG 58.722 38.462 0.00 0.00 45.76 3.86
2648 4051 0.094216 CTGCAGCATCAAGACGTTCG 59.906 55.000 0.00 0.00 0.00 3.95
2693 4096 3.381908 TCAACCTTAGCTCTTCGATCTCC 59.618 47.826 0.00 0.00 0.00 3.71
2725 4128 5.765677 GCCTCTGTTTTCTCCTTTTCTACTT 59.234 40.000 0.00 0.00 0.00 2.24
2733 4136 0.398318 AGCGCCTCTGTTTTCTCCTT 59.602 50.000 2.29 0.00 0.00 3.36
2735 4138 0.320771 TCAGCGCCTCTGTTTTCTCC 60.321 55.000 2.29 0.00 43.32 3.71
2828 4231 2.530177 TCGACTTCATCTTTGCTAGCG 58.470 47.619 10.77 0.00 0.00 4.26
2884 4287 0.605083 AGCTGACATCTCGTGCAAGA 59.395 50.000 1.47 1.47 0.00 3.02
3065 4468 2.259917 TCTGCCTCCATTCTCTCAACA 58.740 47.619 0.00 0.00 0.00 3.33
3098 4501 1.361204 TGGACTGCCATTCCTCAGAA 58.639 50.000 2.53 0.00 39.92 3.02
3212 4615 6.580416 GCAGCTCAGTATTTTCAGTTTCTTTC 59.420 38.462 0.00 0.00 0.00 2.62
3219 4622 3.008375 TCCAGCAGCTCAGTATTTTCAGT 59.992 43.478 0.00 0.00 0.00 3.41
3230 4633 1.481363 CTCATCTTCTCCAGCAGCTCA 59.519 52.381 0.00 0.00 0.00 4.26
3250 4653 1.340889 CTAGCTGAGCCTCCAGATGAC 59.659 57.143 0.00 0.00 36.29 3.06
3407 4810 8.004215 AGATAAGAGAGCTCCTTTATCTTCTCA 58.996 37.037 28.06 12.37 32.69 3.27
3419 4822 2.227865 CGGCACTAGATAAGAGAGCTCC 59.772 54.545 10.93 1.70 0.00 4.70
3602 5005 2.498078 GTCTCCCTTGTTGGACTCTAGG 59.502 54.545 0.00 0.00 38.35 3.02
3605 5008 2.252714 GAGTCTCCCTTGTTGGACTCT 58.747 52.381 12.77 0.00 46.29 3.24
3662 5065 1.852067 GCGACCTGATGCCGTTGTTT 61.852 55.000 0.00 0.00 0.00 2.83
3677 5080 1.008538 CTGCTGTTTGGTTGGCGAC 60.009 57.895 0.00 0.00 0.00 5.19
4020 5425 6.206634 GGAAATCTCTGTTCCATGTACAACAA 59.793 38.462 0.00 0.00 43.52 2.83
4080 5500 6.656902 TGATAGCACTCCTTCAAATCATCTT 58.343 36.000 0.00 0.00 0.00 2.40
4085 5505 5.008415 CACCATGATAGCACTCCTTCAAATC 59.992 44.000 0.00 0.00 0.00 2.17
4098 5526 3.465742 TGAAGAGAGCACCATGATAGC 57.534 47.619 0.00 0.00 0.00 2.97
4116 5544 4.776349 ACAACAGGTCAACAGTAACATGA 58.224 39.130 0.00 0.00 31.93 3.07
4135 5563 2.616256 GCCACCATCATCTCTGTGACAA 60.616 50.000 0.00 0.00 0.00 3.18
4160 5590 1.273048 CAGCAGCTTTACCCAATTGCA 59.727 47.619 0.00 0.00 34.17 4.08
4162 5592 3.119495 GGTACAGCAGCTTTACCCAATTG 60.119 47.826 22.80 0.00 30.67 2.32
4163 5593 3.089284 GGTACAGCAGCTTTACCCAATT 58.911 45.455 22.80 0.00 30.67 2.32
4164 5594 2.041081 TGGTACAGCAGCTTTACCCAAT 59.959 45.455 27.94 0.00 35.32 3.16
4166 5596 1.060729 TGGTACAGCAGCTTTACCCA 58.939 50.000 27.94 16.71 35.32 4.51
4167 5597 3.948735 TGGTACAGCAGCTTTACCC 57.051 52.632 27.94 14.77 35.32 3.69
4186 5616 0.620556 TTTGGTCCTCCTCCATCAGC 59.379 55.000 0.00 0.00 34.75 4.26
4291 5760 2.985847 GTGCCGGCCTTTTCAGCT 60.986 61.111 26.77 0.00 0.00 4.24
4295 5764 1.581447 CTCTTGTGCCGGCCTTTTC 59.419 57.895 26.77 9.75 0.00 2.29
4358 5828 6.700081 TGTACTACATCTTTGTGAGTTGTGAC 59.300 38.462 0.00 0.00 38.45 3.67
4399 5870 2.695666 CTCCACCATAGGACCTACAGTG 59.304 54.545 19.44 19.44 33.19 3.66
4400 5871 2.955461 GCTCCACCATAGGACCTACAGT 60.955 54.545 2.46 1.16 33.19 3.55
4401 5872 1.689273 GCTCCACCATAGGACCTACAG 59.311 57.143 2.46 0.48 33.19 2.74
4402 5873 1.789523 GCTCCACCATAGGACCTACA 58.210 55.000 2.46 0.00 33.19 2.74
4432 5903 2.617250 GCGAGTGCATTTTGTCATGA 57.383 45.000 0.00 0.00 42.15 3.07
4472 5944 2.507471 ACTAGCCCTACTACAGTACCGT 59.493 50.000 0.00 0.00 0.00 4.83
4473 5945 3.137533 GACTAGCCCTACTACAGTACCG 58.862 54.545 0.00 0.00 0.00 4.02
4478 5950 4.131596 GAGACAGACTAGCCCTACTACAG 58.868 52.174 0.00 0.00 0.00 2.74
4480 5952 4.131596 CAGAGACAGACTAGCCCTACTAC 58.868 52.174 0.00 0.00 0.00 2.73
4481 5953 4.038633 TCAGAGACAGACTAGCCCTACTA 58.961 47.826 0.00 0.00 0.00 1.82
4482 5954 2.847449 TCAGAGACAGACTAGCCCTACT 59.153 50.000 0.00 0.00 0.00 2.57
4484 5956 3.372133 CCTTCAGAGACAGACTAGCCCTA 60.372 52.174 0.00 0.00 0.00 3.53
4485 5957 2.622977 CCTTCAGAGACAGACTAGCCCT 60.623 54.545 0.00 0.00 0.00 5.19
4493 5978 1.198713 GGCCATCCTTCAGAGACAGA 58.801 55.000 0.00 0.00 0.00 3.41
4699 6185 0.387929 TAGATTTGCGGTAGGCCTCG 59.612 55.000 9.68 9.52 42.61 4.63
4709 6195 0.584054 GCGCTCGTTGTAGATTTGCG 60.584 55.000 0.00 0.00 43.91 4.85
4714 6200 0.382515 GAGAGGCGCTCGTTGTAGAT 59.617 55.000 7.64 0.00 35.36 1.98
4715 6201 1.801332 GAGAGGCGCTCGTTGTAGA 59.199 57.895 7.64 0.00 35.36 2.59
4744 6237 5.291971 GTGACTGAAAATCAAACTGGCATT 58.708 37.500 0.00 0.00 0.00 3.56
4784 6277 2.096819 ACGCATTTGGCCGTTTATAGTG 59.903 45.455 0.00 0.00 40.31 2.74
4821 6314 1.280710 TCCCAATTAGACGTGCACCAT 59.719 47.619 12.15 0.00 0.00 3.55
4895 6390 9.810545 CTTCCGTTCTTCTCTTTATCTTATCTT 57.189 33.333 0.00 0.00 0.00 2.40
4896 6391 8.417884 CCTTCCGTTCTTCTCTTTATCTTATCT 58.582 37.037 0.00 0.00 0.00 1.98
4897 6392 7.654116 CCCTTCCGTTCTTCTCTTTATCTTATC 59.346 40.741 0.00 0.00 0.00 1.75
4898 6393 7.419172 CCCCTTCCGTTCTTCTCTTTATCTTAT 60.419 40.741 0.00 0.00 0.00 1.73
4899 6394 6.127140 CCCCTTCCGTTCTTCTCTTTATCTTA 60.127 42.308 0.00 0.00 0.00 2.10
4900 6395 5.338463 CCCCTTCCGTTCTTCTCTTTATCTT 60.338 44.000 0.00 0.00 0.00 2.40
4901 6396 4.162509 CCCCTTCCGTTCTTCTCTTTATCT 59.837 45.833 0.00 0.00 0.00 1.98
4902 6397 4.161754 TCCCCTTCCGTTCTTCTCTTTATC 59.838 45.833 0.00 0.00 0.00 1.75
4911 6406 3.066198 CGGTCCCCTTCCGTTCTT 58.934 61.111 0.00 0.00 42.62 2.52
4948 6444 1.692411 GGCTTTCACAGGGTTTCAGT 58.308 50.000 0.00 0.00 0.00 3.41
4957 6455 2.027377 AGAGATGTCAGGGCTTTCACAG 60.027 50.000 0.00 0.00 0.00 3.66
4988 6486 0.393132 GCCCTGCTCCTCTGTTTACC 60.393 60.000 0.00 0.00 0.00 2.85
4989 6487 0.615850 AGCCCTGCTCCTCTGTTTAC 59.384 55.000 0.00 0.00 30.62 2.01
5019 6519 1.856539 TTCCGGACGGAGGGAGTAGT 61.857 60.000 13.64 0.00 46.06 2.73
5025 6525 0.828677 AAGTAATTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
5026 6526 1.206371 ACAAGTAATTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
5027 6527 2.537401 GACAAGTAATTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
5028 6528 1.135315 CGACAAGTAATTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
5029 6529 1.274596 CGACAAGTAATTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
5030 6530 1.986698 ACGACAAGTAATTCCGGACG 58.013 50.000 1.83 3.25 0.00 4.79
5031 6531 4.361451 TCTACGACAAGTAATTCCGGAC 57.639 45.455 1.83 0.00 34.45 4.79
5032 6532 5.389859 TTTCTACGACAAGTAATTCCGGA 57.610 39.130 0.00 0.00 34.45 5.14
5033 6533 5.006358 CCATTTCTACGACAAGTAATTCCGG 59.994 44.000 0.00 0.00 34.45 5.14
5034 6534 5.808540 TCCATTTCTACGACAAGTAATTCCG 59.191 40.000 0.00 0.00 34.45 4.30
5035 6535 7.280205 ACATCCATTTCTACGACAAGTAATTCC 59.720 37.037 0.00 0.00 34.45 3.01
5036 6536 8.197988 ACATCCATTTCTACGACAAGTAATTC 57.802 34.615 0.00 0.00 34.45 2.17
5037 6537 9.832445 ATACATCCATTTCTACGACAAGTAATT 57.168 29.630 0.00 0.00 34.45 1.40
5038 6538 9.477484 GATACATCCATTTCTACGACAAGTAAT 57.523 33.333 0.00 0.00 34.45 1.89
5039 6539 8.692710 AGATACATCCATTTCTACGACAAGTAA 58.307 33.333 0.00 0.00 34.45 2.24
5040 6540 8.234136 AGATACATCCATTTCTACGACAAGTA 57.766 34.615 0.00 0.00 0.00 2.24
5041 6541 7.113658 AGATACATCCATTTCTACGACAAGT 57.886 36.000 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.