Multiple sequence alignment - TraesCS2B01G468300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G468300 chr2B 100.000 5072 0 0 1 5072 664213663 664218734 0.000000e+00 9367
1 TraesCS2B01G468300 chr2B 95.726 117 5 0 4519 4635 793498808 793498692 6.700000e-44 189
2 TraesCS2B01G468300 chr2B 97.196 107 2 1 1504 1610 418953565 418953670 4.030000e-41 180
3 TraesCS2B01G468300 chr2B 95.495 111 4 1 1499 1609 66782553 66782662 5.220000e-40 176
4 TraesCS2B01G468300 chr2B 88.776 98 7 3 2180 2277 214576174 214576081 3.210000e-22 117
5 TraesCS2B01G468300 chr2D 90.607 2736 153 55 1641 4342 556942323 556944988 0.000000e+00 3533
6 TraesCS2B01G468300 chr2D 94.955 555 25 3 1 553 556940895 556941448 0.000000e+00 867
7 TraesCS2B01G468300 chr2D 89.130 460 20 18 4628 5072 556947790 556948234 3.450000e-151 545
8 TraesCS2B01G468300 chr2D 84.409 372 29 13 995 1341 556941808 556942175 6.290000e-89 339
9 TraesCS2B01G468300 chr2A 93.146 1707 87 14 1605 3287 696918710 696920410 0.000000e+00 2477
10 TraesCS2B01G468300 chr2A 93.175 967 39 13 3316 4276 696920405 696921350 0.000000e+00 1395
11 TraesCS2B01G468300 chr2A 94.755 572 27 3 1 570 696917218 696917788 0.000000e+00 887
12 TraesCS2B01G468300 chr2A 84.895 523 40 19 995 1505 696918216 696918711 4.560000e-135 492
13 TraesCS2B01G468300 chr2A 86.313 453 33 16 4627 5072 696921511 696921941 2.770000e-127 466
14 TraesCS2B01G468300 chr1A 100.000 107 0 0 4524 4630 137739650 137739756 1.110000e-46 198
15 TraesCS2B01G468300 chr1B 99.083 109 1 0 4522 4630 4546187 4546079 4.010000e-46 196
16 TraesCS2B01G468300 chr1B 98.198 111 2 0 4520 4630 15285321 15285211 1.440000e-45 195
17 TraesCS2B01G468300 chr1B 98.113 106 1 1 1507 1611 328139782 328139677 3.120000e-42 183
18 TraesCS2B01G468300 chr1B 98.077 104 2 0 1503 1606 536657403 536657506 1.120000e-41 182
19 TraesCS2B01G468300 chr1B 94.783 115 3 2 1504 1618 393748499 393748388 5.220000e-40 176
20 TraesCS2B01G468300 chr5B 96.581 117 4 0 4515 4631 70910679 70910795 1.440000e-45 195
21 TraesCS2B01G468300 chr5B 99.020 102 1 0 1507 1608 306435382 306435281 3.120000e-42 183
22 TraesCS2B01G468300 chr5B 94.737 114 5 1 1507 1620 68902492 68902380 5.220000e-40 176
23 TraesCS2B01G468300 chr3B 97.345 113 3 0 4521 4633 593563580 593563692 5.180000e-45 193
24 TraesCS2B01G468300 chr3B 95.614 114 2 3 1495 1607 560117409 560117298 4.030000e-41 180
25 TraesCS2B01G468300 chr4A 93.750 128 3 5 4516 4639 610483266 610483392 2.410000e-43 187
26 TraesCS2B01G468300 chr4A 93.600 125 7 1 4510 4633 59307799 59307923 8.670000e-43 185
27 TraesCS2B01G468300 chr7D 95.652 115 5 0 4520 4634 2337976 2337862 8.670000e-43 185
28 TraesCS2B01G468300 chr7D 88.776 98 7 3 2180 2277 46898103 46898196 3.210000e-22 117
29 TraesCS2B01G468300 chr7B 96.364 110 3 1 1506 1615 21184221 21184113 4.030000e-41 180


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G468300 chr2B 664213663 664218734 5071 False 9367.0 9367 100.00000 1 5072 1 chr2B.!!$F3 5071
1 TraesCS2B01G468300 chr2D 556940895 556948234 7339 False 1321.0 3533 89.77525 1 5072 4 chr2D.!!$F1 5071
2 TraesCS2B01G468300 chr2A 696917218 696921941 4723 False 1143.4 2477 90.45680 1 5072 5 chr2A.!!$F1 5071

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
611 674 0.109132 CTGCTTGCCATTTTCGTCCC 60.109 55.0 0.0 0.0 0.0 4.46 F
1523 1680 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.0 0.0 0.0 0.0 3.28 F
1646 1803 0.652592 CGATGGTGAAGTCCGATTGC 59.347 55.0 0.0 0.0 0.0 3.56 F
2548 2759 0.176449 TGCCATCATGTCACTCTCCG 59.824 55.0 0.0 0.0 0.0 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1621 1778 0.036388 GGACTTCACCATCGGAAGCA 60.036 55.0 0.00 0.00 44.35 3.91 R
2481 2692 0.730840 TTGCATCGCATTCAGCAGAG 59.269 50.0 0.00 0.00 46.13 3.35 R
2775 3003 0.798776 GAGCATTCCTGACGTTGGTG 59.201 55.0 8.13 2.66 0.00 4.17 R
4369 5040 0.029300 CCACAGCAAGGTGAACAACG 59.971 55.0 6.23 0.00 41.32 4.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 1.915614 CTCGGTCACACCAGCATTGC 61.916 60.000 0.00 0.00 38.47 3.56
64 65 1.667830 CAAGGACGAGGCGCAAGAA 60.668 57.895 10.83 0.00 43.02 2.52
66 67 0.534203 AAGGACGAGGCGCAAGAAAA 60.534 50.000 10.83 0.00 43.02 2.29
77 78 1.335324 CGCAAGAAAAGGCACCAGAAG 60.335 52.381 0.00 0.00 43.02 2.85
79 80 2.101415 GCAAGAAAAGGCACCAGAAGTT 59.899 45.455 0.00 0.00 0.00 2.66
194 196 0.911769 CAGGCCTTGTGAGGTGGATA 59.088 55.000 0.00 0.00 45.44 2.59
233 235 2.023771 CACGACGACACAGCAGCAT 61.024 57.895 0.00 0.00 0.00 3.79
237 239 3.051479 CGACACAGCAGCATGGCA 61.051 61.111 3.57 0.00 35.86 4.92
248 250 2.048603 GCATGGCAGGACCTTGGAC 61.049 63.158 1.99 0.00 42.58 4.02
277 280 4.100084 CCATCACCCGCCTGCTGA 62.100 66.667 0.00 0.00 0.00 4.26
285 288 1.220206 CCGCCTGCTGAAGATCTGT 59.780 57.895 0.00 0.00 0.00 3.41
366 369 2.676121 TGGGAAGCACAATGCCCG 60.676 61.111 0.00 0.00 46.52 6.13
558 562 1.339727 GCCGTTCCCCTTCTTATGTGT 60.340 52.381 0.00 0.00 0.00 3.72
561 565 3.197116 CCGTTCCCCTTCTTATGTGTAGT 59.803 47.826 0.00 0.00 0.00 2.73
570 574 8.585018 CCCCTTCTTATGTGTAGTTTGATTTTT 58.415 33.333 0.00 0.00 0.00 1.94
602 665 3.457380 TCTCCTCTTAATCTGCTTGCCAT 59.543 43.478 0.00 0.00 0.00 4.40
606 669 5.126061 TCCTCTTAATCTGCTTGCCATTTTC 59.874 40.000 0.00 0.00 0.00 2.29
607 670 4.985413 TCTTAATCTGCTTGCCATTTTCG 58.015 39.130 0.00 0.00 0.00 3.46
608 671 4.458989 TCTTAATCTGCTTGCCATTTTCGT 59.541 37.500 0.00 0.00 0.00 3.85
609 672 2.927553 ATCTGCTTGCCATTTTCGTC 57.072 45.000 0.00 0.00 0.00 4.20
611 674 0.109132 CTGCTTGCCATTTTCGTCCC 60.109 55.000 0.00 0.00 0.00 4.46
612 675 0.825425 TGCTTGCCATTTTCGTCCCA 60.825 50.000 0.00 0.00 0.00 4.37
613 676 0.532115 GCTTGCCATTTTCGTCCCAT 59.468 50.000 0.00 0.00 0.00 4.00
617 680 3.311486 TGCCATTTTCGTCCCATTTTC 57.689 42.857 0.00 0.00 0.00 2.29
618 681 2.896685 TGCCATTTTCGTCCCATTTTCT 59.103 40.909 0.00 0.00 0.00 2.52
620 683 3.193479 GCCATTTTCGTCCCATTTTCTCT 59.807 43.478 0.00 0.00 0.00 3.10
621 684 4.737054 CCATTTTCGTCCCATTTTCTCTG 58.263 43.478 0.00 0.00 0.00 3.35
622 685 4.458989 CCATTTTCGTCCCATTTTCTCTGA 59.541 41.667 0.00 0.00 0.00 3.27
624 687 5.627499 TTTTCGTCCCATTTTCTCTGATG 57.373 39.130 0.00 0.00 0.00 3.07
625 688 3.981071 TCGTCCCATTTTCTCTGATGT 57.019 42.857 0.00 0.00 0.00 3.06
626 689 3.599343 TCGTCCCATTTTCTCTGATGTG 58.401 45.455 0.00 0.00 0.00 3.21
627 690 3.007940 TCGTCCCATTTTCTCTGATGTGT 59.992 43.478 0.00 0.00 0.00 3.72
628 691 3.125829 CGTCCCATTTTCTCTGATGTGTG 59.874 47.826 0.00 0.00 0.00 3.82
629 692 4.326826 GTCCCATTTTCTCTGATGTGTGA 58.673 43.478 0.00 0.00 0.00 3.58
630 693 4.154918 GTCCCATTTTCTCTGATGTGTGAC 59.845 45.833 0.00 0.00 0.00 3.67
631 694 3.441572 CCCATTTTCTCTGATGTGTGACC 59.558 47.826 0.00 0.00 0.00 4.02
632 695 4.074259 CCATTTTCTCTGATGTGTGACCA 58.926 43.478 0.00 0.00 0.00 4.02
633 696 4.703575 CCATTTTCTCTGATGTGTGACCAT 59.296 41.667 0.00 0.00 0.00 3.55
634 697 5.392703 CCATTTTCTCTGATGTGTGACCATG 60.393 44.000 0.00 0.00 0.00 3.66
635 698 4.622260 TTTCTCTGATGTGTGACCATGA 57.378 40.909 0.00 0.00 0.00 3.07
636 699 4.831674 TTCTCTGATGTGTGACCATGAT 57.168 40.909 0.00 0.00 0.00 2.45
637 700 4.133013 TCTCTGATGTGTGACCATGATG 57.867 45.455 0.00 0.00 0.00 3.07
638 701 3.516700 TCTCTGATGTGTGACCATGATGT 59.483 43.478 0.00 0.00 0.00 3.06
639 702 4.019950 TCTCTGATGTGTGACCATGATGTT 60.020 41.667 0.00 0.00 0.00 2.71
640 703 4.004982 TCTGATGTGTGACCATGATGTTG 58.995 43.478 0.00 0.00 0.00 3.33
641 704 4.004982 CTGATGTGTGACCATGATGTTGA 58.995 43.478 0.00 0.00 0.00 3.18
642 705 4.591929 TGATGTGTGACCATGATGTTGAT 58.408 39.130 0.00 0.00 0.00 2.57
643 706 4.396790 TGATGTGTGACCATGATGTTGATG 59.603 41.667 0.00 0.00 0.00 3.07
644 707 3.753815 TGTGTGACCATGATGTTGATGT 58.246 40.909 0.00 0.00 0.00 3.06
645 708 4.143543 TGTGTGACCATGATGTTGATGTT 58.856 39.130 0.00 0.00 0.00 2.71
646 709 4.583907 TGTGTGACCATGATGTTGATGTTT 59.416 37.500 0.00 0.00 0.00 2.83
647 710 5.068855 TGTGTGACCATGATGTTGATGTTTT 59.931 36.000 0.00 0.00 0.00 2.43
648 711 5.984926 GTGTGACCATGATGTTGATGTTTTT 59.015 36.000 0.00 0.00 0.00 1.94
678 741 6.822170 CCCCACTGTATAATGATCATGATCTG 59.178 42.308 30.65 18.92 38.60 2.90
741 811 7.312415 AGATGACATCATGATGAACCTGATA 57.688 36.000 36.37 16.19 41.20 2.15
746 816 8.309656 TGACATCATGATGAACCTGATAGATAC 58.690 37.037 36.37 12.66 41.20 2.24
751 821 7.727634 TCATGATGAACCTGATAGATACTGTCT 59.272 37.037 0.00 0.00 41.11 3.41
753 823 8.996651 TGATGAACCTGATAGATACTGTCTAA 57.003 34.615 0.00 0.00 42.51 2.10
786 890 6.560253 ATTTTAGCTGGTAGTGTCAAGTTG 57.440 37.500 0.00 0.00 0.00 3.16
795 899 1.559682 AGTGTCAAGTTGTGGACCAGT 59.440 47.619 2.11 0.00 33.09 4.00
820 926 4.568152 TTTTAACTGGCAAGCTGTTCTC 57.432 40.909 0.00 0.00 0.00 2.87
821 927 3.492102 TTAACTGGCAAGCTGTTCTCT 57.508 42.857 0.00 0.00 0.00 3.10
822 928 1.602311 AACTGGCAAGCTGTTCTCTG 58.398 50.000 0.00 0.00 0.00 3.35
823 929 0.761187 ACTGGCAAGCTGTTCTCTGA 59.239 50.000 0.00 0.00 0.00 3.27
824 930 1.270732 ACTGGCAAGCTGTTCTCTGAG 60.271 52.381 0.00 0.00 0.00 3.35
825 931 1.001746 CTGGCAAGCTGTTCTCTGAGA 59.998 52.381 2.58 2.58 0.00 3.27
826 932 1.001746 TGGCAAGCTGTTCTCTGAGAG 59.998 52.381 7.52 2.28 0.00 3.20
827 933 1.274728 GGCAAGCTGTTCTCTGAGAGA 59.725 52.381 8.34 8.34 36.86 3.10
842 948 8.062065 TCTCTGAGAGATTAGAGAGGTTTTTC 57.938 38.462 8.34 0.00 43.21 2.29
846 952 6.498651 TGAGAGATTAGAGAGGTTTTTCCAGT 59.501 38.462 0.00 0.00 39.02 4.00
853 959 6.641169 AGAGAGGTTTTTCCAGTTGAATTC 57.359 37.500 0.00 0.00 39.02 2.17
855 961 7.518188 AGAGAGGTTTTTCCAGTTGAATTCTA 58.482 34.615 7.05 0.00 39.02 2.10
856 962 7.663493 AGAGAGGTTTTTCCAGTTGAATTCTAG 59.337 37.037 7.05 0.00 39.02 2.43
859 965 5.470368 GTTTTTCCAGTTGAATTCTAGGGC 58.530 41.667 7.05 0.00 31.67 5.19
860 966 4.380843 TTTCCAGTTGAATTCTAGGGCA 57.619 40.909 7.05 0.00 31.67 5.36
862 968 3.686016 TCCAGTTGAATTCTAGGGCAAC 58.314 45.455 7.05 2.33 40.54 4.17
865 971 4.156739 CCAGTTGAATTCTAGGGCAACTTC 59.843 45.833 7.05 0.00 46.15 3.01
867 973 5.474876 CAGTTGAATTCTAGGGCAACTTCTT 59.525 40.000 7.05 0.00 46.15 2.52
868 974 6.015940 CAGTTGAATTCTAGGGCAACTTCTTT 60.016 38.462 7.05 0.00 46.15 2.52
870 976 6.976934 TGAATTCTAGGGCAACTTCTTTTT 57.023 33.333 7.05 0.00 0.00 1.94
914 1040 3.551635 TGAGGGGGAATTTTAAGGCAA 57.448 42.857 0.00 0.00 0.00 4.52
968 1094 2.716217 GCAGTAAAGCCCAGATGAAGT 58.284 47.619 0.00 0.00 0.00 3.01
969 1095 3.084786 GCAGTAAAGCCCAGATGAAGTT 58.915 45.455 0.00 0.00 0.00 2.66
970 1096 3.507622 GCAGTAAAGCCCAGATGAAGTTT 59.492 43.478 0.00 0.00 0.00 2.66
971 1097 4.021981 GCAGTAAAGCCCAGATGAAGTTTT 60.022 41.667 0.00 0.00 0.00 2.43
972 1098 5.183140 GCAGTAAAGCCCAGATGAAGTTTTA 59.817 40.000 0.00 0.00 0.00 1.52
973 1099 6.294508 GCAGTAAAGCCCAGATGAAGTTTTAA 60.295 38.462 0.00 0.00 0.00 1.52
974 1100 7.308435 CAGTAAAGCCCAGATGAAGTTTTAAG 58.692 38.462 0.00 0.00 0.00 1.85
975 1101 7.174946 CAGTAAAGCCCAGATGAAGTTTTAAGA 59.825 37.037 0.00 0.00 0.00 2.10
976 1102 7.890655 AGTAAAGCCCAGATGAAGTTTTAAGAT 59.109 33.333 0.00 0.00 0.00 2.40
977 1103 6.521151 AAGCCCAGATGAAGTTTTAAGATG 57.479 37.500 0.00 0.00 0.00 2.90
978 1104 5.574188 AGCCCAGATGAAGTTTTAAGATGT 58.426 37.500 0.00 0.00 0.00 3.06
979 1105 6.012745 AGCCCAGATGAAGTTTTAAGATGTT 58.987 36.000 0.00 0.00 0.00 2.71
980 1106 6.494835 AGCCCAGATGAAGTTTTAAGATGTTT 59.505 34.615 0.00 0.00 0.00 2.83
981 1107 7.015584 AGCCCAGATGAAGTTTTAAGATGTTTT 59.984 33.333 0.00 0.00 0.00 2.43
982 1108 7.657354 GCCCAGATGAAGTTTTAAGATGTTTTT 59.343 33.333 0.00 0.00 0.00 1.94
1026 1152 2.440980 GACTGGCCTTGGCCCATC 60.441 66.667 26.03 19.10 0.00 3.51
1027 1153 3.267233 ACTGGCCTTGGCCCATCA 61.267 61.111 26.03 8.14 0.00 3.07
1028 1154 2.037687 CTGGCCTTGGCCCATCAA 59.962 61.111 26.03 7.77 0.00 2.57
1029 1155 1.382146 CTGGCCTTGGCCCATCAAT 60.382 57.895 26.03 0.00 0.00 2.57
1037 1163 0.998928 TGGCCCATCAATGTAGTGGT 59.001 50.000 0.00 0.00 0.00 4.16
1041 1167 2.279741 CCCATCAATGTAGTGGTCACG 58.720 52.381 0.00 0.00 36.20 4.35
1058 1185 4.256180 GATCCCGCCGGCTCCATT 62.256 66.667 26.68 5.05 0.00 3.16
1059 1186 4.569180 ATCCCGCCGGCTCCATTG 62.569 66.667 26.68 7.40 0.00 2.82
1063 1190 4.776322 CGCCGGCTCCATTGGTCA 62.776 66.667 26.68 0.00 0.00 4.02
1065 1192 2.989639 CCGGCTCCATTGGTCAGA 59.010 61.111 1.86 0.00 0.00 3.27
1070 1197 1.677217 GGCTCCATTGGTCAGACAGAC 60.677 57.143 2.17 0.00 46.83 3.51
1182 1327 1.077993 AGCCTCCAACTAGTGAGTCCT 59.922 52.381 0.00 0.00 33.58 3.85
1186 1331 3.357203 CTCCAACTAGTGAGTCCTGCTA 58.643 50.000 0.00 0.00 33.58 3.49
1191 1336 1.671845 CTAGTGAGTCCTGCTACCGTC 59.328 57.143 0.00 0.00 0.00 4.79
1230 1376 3.428999 GCTGTCTACCAATCGCTCTGTTA 60.429 47.826 0.00 0.00 0.00 2.41
1255 1401 0.602905 GCCTCGTGTACTGCTTTGGT 60.603 55.000 0.00 0.00 0.00 3.67
1261 1407 2.552315 CGTGTACTGCTTTGGTGGATTT 59.448 45.455 0.00 0.00 0.00 2.17
1269 1415 2.368548 GCTTTGGTGGATTTGGGAAGTT 59.631 45.455 0.00 0.00 0.00 2.66
1305 1454 7.589993 AGAAAAATCCAAGGATCCAGATACAT 58.410 34.615 15.82 3.08 33.08 2.29
1332 1487 1.156736 CGCTGTAGAACCCAAACCTG 58.843 55.000 0.00 0.00 0.00 4.00
1360 1515 1.070914 GGAGTAGATGTAGGGCCAAGC 59.929 57.143 6.18 0.00 0.00 4.01
1383 1540 7.208777 AGCAGAGAAATGGCTATATCATATCG 58.791 38.462 0.00 0.00 35.82 2.92
1403 1560 4.395583 GCTCTGTGCTTGTGCGGC 62.396 66.667 0.00 0.00 43.34 6.53
1435 1592 0.978146 AGATCGGACAGGGGTCAAGG 60.978 60.000 0.00 0.00 46.17 3.61
1469 1626 5.095490 GTGTGGAATTTTAATGAGGCTTCG 58.905 41.667 0.00 0.00 0.00 3.79
1486 1643 1.130955 TCGGTGTAAAACGCGAACTC 58.869 50.000 15.93 6.17 31.36 3.01
1493 1650 3.796178 TGTAAAACGCGAACTCGTAGTTT 59.204 39.130 15.93 16.33 45.77 2.66
1494 1651 3.494309 AAAACGCGAACTCGTAGTTTC 57.506 42.857 15.93 0.00 44.43 2.78
1495 1652 2.124011 AACGCGAACTCGTAGTTTCA 57.876 45.000 15.93 0.00 42.46 2.69
1496 1653 2.342910 ACGCGAACTCGTAGTTTCAT 57.657 45.000 15.93 0.00 38.80 2.57
1498 1655 2.247637 CGCGAACTCGTAGTTTCATGA 58.752 47.619 0.00 0.00 38.80 3.07
1503 1660 6.077838 GCGAACTCGTAGTTTCATGAAAAAT 58.922 36.000 22.07 15.74 38.80 1.82
1504 1661 7.231607 GCGAACTCGTAGTTTCATGAAAAATA 58.768 34.615 22.07 14.78 38.80 1.40
1505 1662 7.422746 GCGAACTCGTAGTTTCATGAAAAATAG 59.577 37.037 22.07 16.06 38.80 1.73
1506 1663 8.433126 CGAACTCGTAGTTTCATGAAAAATAGT 58.567 33.333 22.07 16.60 38.80 2.12
1509 1666 9.924650 ACTCGTAGTTTCATGAAAAATAGTACT 57.075 29.630 22.07 15.59 28.71 2.73
1511 1668 9.362539 TCGTAGTTTCATGAAAAATAGTACTCC 57.637 33.333 22.07 6.26 28.71 3.85
1512 1669 8.601476 CGTAGTTTCATGAAAAATAGTACTCCC 58.399 37.037 22.07 5.77 28.71 4.30
1513 1670 9.668497 GTAGTTTCATGAAAAATAGTACTCCCT 57.332 33.333 22.07 12.36 28.71 4.20
1514 1671 8.794335 AGTTTCATGAAAAATAGTACTCCCTC 57.206 34.615 22.07 5.17 31.33 4.30
1515 1672 7.829706 AGTTTCATGAAAAATAGTACTCCCTCC 59.170 37.037 22.07 4.56 31.33 4.30
1516 1673 5.914033 TCATGAAAAATAGTACTCCCTCCG 58.086 41.667 0.00 0.00 0.00 4.63
1517 1674 5.424252 TCATGAAAAATAGTACTCCCTCCGT 59.576 40.000 0.00 0.00 0.00 4.69
1518 1675 5.334724 TGAAAAATAGTACTCCCTCCGTC 57.665 43.478 0.00 0.00 0.00 4.79
1519 1676 4.161001 TGAAAAATAGTACTCCCTCCGTCC 59.839 45.833 0.00 0.00 0.00 4.79
1520 1677 2.378378 AATAGTACTCCCTCCGTCCC 57.622 55.000 0.00 0.00 0.00 4.46
1521 1678 1.229131 ATAGTACTCCCTCCGTCCCA 58.771 55.000 0.00 0.00 0.00 4.37
1522 1679 1.002069 TAGTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
1523 1680 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
1524 1681 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
1525 1682 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
1526 1683 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
1527 1684 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
1528 1685 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
1529 1686 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
1530 1687 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
1531 1688 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
1532 1689 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
1533 1690 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
1534 1691 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
1535 1692 4.069304 TCCGTCCCAAAATAAGTGTCTTG 58.931 43.478 0.00 0.00 0.00 3.02
1536 1693 4.069304 CCGTCCCAAAATAAGTGTCTTGA 58.931 43.478 0.00 0.00 0.00 3.02
1537 1694 4.154195 CCGTCCCAAAATAAGTGTCTTGAG 59.846 45.833 0.00 0.00 0.00 3.02
1538 1695 4.378459 CGTCCCAAAATAAGTGTCTTGAGC 60.378 45.833 0.00 0.00 0.00 4.26
1539 1696 4.762251 GTCCCAAAATAAGTGTCTTGAGCT 59.238 41.667 0.00 0.00 0.00 4.09
1540 1697 5.241728 GTCCCAAAATAAGTGTCTTGAGCTT 59.758 40.000 0.00 0.00 0.00 3.74
1541 1698 6.430000 GTCCCAAAATAAGTGTCTTGAGCTTA 59.570 38.462 0.00 0.00 0.00 3.09
1542 1699 6.655003 TCCCAAAATAAGTGTCTTGAGCTTAG 59.345 38.462 0.00 0.00 0.00 2.18
1543 1700 6.431234 CCCAAAATAAGTGTCTTGAGCTTAGT 59.569 38.462 0.00 0.00 0.00 2.24
1544 1701 7.606456 CCCAAAATAAGTGTCTTGAGCTTAGTA 59.394 37.037 0.00 0.00 0.00 1.82
1545 1702 8.443937 CCAAAATAAGTGTCTTGAGCTTAGTAC 58.556 37.037 0.00 0.00 0.00 2.73
1546 1703 8.988934 CAAAATAAGTGTCTTGAGCTTAGTACA 58.011 33.333 0.00 0.00 0.00 2.90
1547 1704 9.555727 AAAATAAGTGTCTTGAGCTTAGTACAA 57.444 29.630 0.00 0.00 0.00 2.41
1548 1705 9.555727 AAATAAGTGTCTTGAGCTTAGTACAAA 57.444 29.630 0.00 0.00 0.00 2.83
1549 1706 9.726438 AATAAGTGTCTTGAGCTTAGTACAAAT 57.274 29.630 0.00 0.00 0.00 2.32
1550 1707 9.726438 ATAAGTGTCTTGAGCTTAGTACAAATT 57.274 29.630 0.00 0.00 0.00 1.82
1551 1708 8.451908 AAGTGTCTTGAGCTTAGTACAAATTT 57.548 30.769 0.00 0.00 0.00 1.82
1552 1709 7.865707 AGTGTCTTGAGCTTAGTACAAATTTG 58.134 34.615 16.67 16.67 0.00 2.32
1553 1710 7.499232 AGTGTCTTGAGCTTAGTACAAATTTGT 59.501 33.333 25.99 25.99 44.86 2.83
1554 1711 8.770828 GTGTCTTGAGCTTAGTACAAATTTGTA 58.229 33.333 23.91 23.91 42.35 2.41
1578 1735 7.148355 ACTAGAGCTAGTACAAAGTTGAGAC 57.852 40.000 8.35 0.00 43.98 3.36
1579 1736 6.715718 ACTAGAGCTAGTACAAAGTTGAGACA 59.284 38.462 8.35 0.00 43.98 3.41
1580 1737 5.774630 AGAGCTAGTACAAAGTTGAGACAC 58.225 41.667 0.00 0.00 0.00 3.67
1581 1738 5.536916 AGAGCTAGTACAAAGTTGAGACACT 59.463 40.000 0.00 0.00 0.00 3.55
1582 1739 6.041069 AGAGCTAGTACAAAGTTGAGACACTT 59.959 38.462 0.00 0.00 38.74 3.16
1583 1740 7.230913 AGAGCTAGTACAAAGTTGAGACACTTA 59.769 37.037 0.00 0.00 35.87 2.24
1584 1741 7.897864 AGCTAGTACAAAGTTGAGACACTTAT 58.102 34.615 0.00 0.00 35.87 1.73
1585 1742 8.368668 AGCTAGTACAAAGTTGAGACACTTATT 58.631 33.333 0.00 0.00 35.87 1.40
1586 1743 8.989980 GCTAGTACAAAGTTGAGACACTTATTT 58.010 33.333 0.00 0.00 35.87 1.40
1589 1746 8.621286 AGTACAAAGTTGAGACACTTATTTTGG 58.379 33.333 0.00 0.00 35.87 3.28
1590 1747 6.805713 ACAAAGTTGAGACACTTATTTTGGG 58.194 36.000 0.00 0.00 35.87 4.12
1591 1748 6.605594 ACAAAGTTGAGACACTTATTTTGGGA 59.394 34.615 0.00 0.00 35.87 4.37
1592 1749 6.635030 AAGTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
1593 1750 5.690865 AGTTGAGACACTTATTTTGGGACA 58.309 37.500 0.00 0.00 0.00 4.02
1594 1751 5.765182 AGTTGAGACACTTATTTTGGGACAG 59.235 40.000 0.00 0.00 42.39 3.51
1595 1752 5.560722 TGAGACACTTATTTTGGGACAGA 57.439 39.130 0.00 0.00 42.39 3.41
1596 1753 5.551233 TGAGACACTTATTTTGGGACAGAG 58.449 41.667 0.00 0.00 42.39 3.35
1597 1754 4.911390 AGACACTTATTTTGGGACAGAGG 58.089 43.478 0.00 0.00 42.39 3.69
1598 1755 4.010349 GACACTTATTTTGGGACAGAGGG 58.990 47.826 0.00 0.00 42.39 4.30
1599 1756 3.655777 ACACTTATTTTGGGACAGAGGGA 59.344 43.478 0.00 0.00 42.39 4.20
1600 1757 4.263506 ACACTTATTTTGGGACAGAGGGAG 60.264 45.833 0.00 0.00 42.39 4.30
1601 1758 3.916989 ACTTATTTTGGGACAGAGGGAGT 59.083 43.478 0.00 0.00 42.39 3.85
1602 1759 5.045869 CACTTATTTTGGGACAGAGGGAGTA 60.046 44.000 0.00 0.00 42.39 2.59
1603 1760 5.189934 ACTTATTTTGGGACAGAGGGAGTAG 59.810 44.000 0.00 0.00 42.39 2.57
1620 1777 9.194271 GAGGGAGTAGTATATTTCGATTGTTTC 57.806 37.037 0.00 0.00 0.00 2.78
1621 1778 8.925338 AGGGAGTAGTATATTTCGATTGTTTCT 58.075 33.333 0.00 0.00 0.00 2.52
1622 1779 8.979574 GGGAGTAGTATATTTCGATTGTTTCTG 58.020 37.037 0.00 0.00 0.00 3.02
1623 1780 8.488764 GGAGTAGTATATTTCGATTGTTTCTGC 58.511 37.037 0.00 0.00 0.00 4.26
1624 1781 9.250624 GAGTAGTATATTTCGATTGTTTCTGCT 57.749 33.333 0.00 0.00 0.00 4.24
1626 1783 9.851043 GTAGTATATTTCGATTGTTTCTGCTTC 57.149 33.333 0.00 0.00 0.00 3.86
1627 1784 7.920738 AGTATATTTCGATTGTTTCTGCTTCC 58.079 34.615 0.00 0.00 0.00 3.46
1628 1785 3.536158 TTTCGATTGTTTCTGCTTCCG 57.464 42.857 0.00 0.00 0.00 4.30
1629 1786 2.448926 TCGATTGTTTCTGCTTCCGA 57.551 45.000 0.00 0.00 0.00 4.55
1630 1787 2.972625 TCGATTGTTTCTGCTTCCGAT 58.027 42.857 0.00 0.00 0.00 4.18
1631 1788 2.672874 TCGATTGTTTCTGCTTCCGATG 59.327 45.455 0.00 0.00 0.00 3.84
1632 1789 2.223112 CGATTGTTTCTGCTTCCGATGG 60.223 50.000 0.00 0.00 0.00 3.51
1633 1790 2.270352 TTGTTTCTGCTTCCGATGGT 57.730 45.000 0.00 0.00 0.00 3.55
1634 1791 1.522668 TGTTTCTGCTTCCGATGGTG 58.477 50.000 0.00 0.00 0.00 4.17
1635 1792 1.071542 TGTTTCTGCTTCCGATGGTGA 59.928 47.619 0.00 0.00 0.00 4.02
1636 1793 2.151202 GTTTCTGCTTCCGATGGTGAA 58.849 47.619 0.00 0.00 0.00 3.18
1637 1794 2.099141 TTCTGCTTCCGATGGTGAAG 57.901 50.000 0.00 0.00 41.70 3.02
1638 1795 0.976641 TCTGCTTCCGATGGTGAAGT 59.023 50.000 0.00 0.00 41.03 3.01
1639 1796 1.066858 TCTGCTTCCGATGGTGAAGTC 60.067 52.381 0.00 0.00 41.03 3.01
1646 1803 0.652592 CGATGGTGAAGTCCGATTGC 59.347 55.000 0.00 0.00 0.00 3.56
1659 1829 2.890311 TCCGATTGCACTTTTTGGTGAT 59.110 40.909 0.00 0.00 39.34 3.06
1712 1882 2.485426 CAGTTCCAGTGCTGTTACCATG 59.515 50.000 0.00 0.00 0.00 3.66
1754 1924 0.766131 TTGCCGAGGTAAGTTTGGGA 59.234 50.000 0.00 0.00 0.00 4.37
1799 1996 7.882179 TCTTTTCCTAGTTTTTAATCACTGGC 58.118 34.615 0.00 0.00 0.00 4.85
1814 2011 3.305709 TGGCGACCAGAAACAGAAG 57.694 52.632 0.00 0.00 0.00 2.85
1819 2016 3.619038 GGCGACCAGAAACAGAAGATTAG 59.381 47.826 0.00 0.00 0.00 1.73
1820 2017 4.495422 GCGACCAGAAACAGAAGATTAGA 58.505 43.478 0.00 0.00 0.00 2.10
1821 2018 5.112686 GCGACCAGAAACAGAAGATTAGAT 58.887 41.667 0.00 0.00 0.00 1.98
1822 2019 5.233263 GCGACCAGAAACAGAAGATTAGATC 59.767 44.000 0.00 0.00 0.00 2.75
1823 2020 6.333416 CGACCAGAAACAGAAGATTAGATCA 58.667 40.000 0.00 0.00 0.00 2.92
1825 2022 8.138074 CGACCAGAAACAGAAGATTAGATCATA 58.862 37.037 0.00 0.00 0.00 2.15
1827 2024 8.207545 ACCAGAAACAGAAGATTAGATCATACC 58.792 37.037 0.00 0.00 0.00 2.73
1829 2026 9.775854 CAGAAACAGAAGATTAGATCATACCAT 57.224 33.333 0.00 0.00 0.00 3.55
1830 2027 9.775854 AGAAACAGAAGATTAGATCATACCATG 57.224 33.333 0.00 0.00 0.00 3.66
1831 2028 8.915057 AAACAGAAGATTAGATCATACCATGG 57.085 34.615 11.19 11.19 0.00 3.66
1833 2030 6.271857 ACAGAAGATTAGATCATACCATGGCT 59.728 38.462 13.04 1.65 0.00 4.75
1834 2031 7.166851 CAGAAGATTAGATCATACCATGGCTT 58.833 38.462 13.04 1.82 0.00 4.35
1835 2032 8.316946 CAGAAGATTAGATCATACCATGGCTTA 58.683 37.037 13.04 0.00 0.00 3.09
1841 2038 6.633325 AGATCATACCATGGCTTAATAGCT 57.367 37.500 13.04 0.00 46.90 3.32
1847 2044 4.974399 ACCATGGCTTAATAGCTTCCTAC 58.026 43.478 13.04 0.00 46.90 3.18
1860 2069 5.017294 AGCTTCCTACTTCAGTTATGCTC 57.983 43.478 0.00 0.00 0.00 4.26
1883 2092 6.298361 TCTTCATTCTCATTGGTTCAGTCAA 58.702 36.000 0.00 0.00 0.00 3.18
2071 2280 5.699001 TGCAGGTATATACAAATTAGTGCCG 59.301 40.000 14.70 0.00 0.00 5.69
2082 2291 5.703592 ACAAATTAGTGCCGTTTAGTCATGA 59.296 36.000 0.00 0.00 0.00 3.07
2126 2337 4.202264 GCTGCAGATGTATAACCTGGTACT 60.202 45.833 20.43 0.00 0.00 2.73
2194 2405 1.463674 AAGGAAATGTCATCGGTGGC 58.536 50.000 0.00 0.00 0.00 5.01
2284 2495 4.487714 TTTTACTCTCCATGGCTAGGTG 57.512 45.455 6.96 0.25 0.00 4.00
2481 2692 1.205417 CAAGATGGTGCCATTGGTTCC 59.795 52.381 5.08 7.82 36.70 3.62
2487 2698 0.610232 GTGCCATTGGTTCCTCTGCT 60.610 55.000 4.26 0.00 0.00 4.24
2493 2704 1.538047 TTGGTTCCTCTGCTGAATGC 58.462 50.000 0.00 0.00 43.25 3.56
2548 2759 0.176449 TGCCATCATGTCACTCTCCG 59.824 55.000 0.00 0.00 0.00 4.63
2549 2760 0.531532 GCCATCATGTCACTCTCCGG 60.532 60.000 0.00 0.00 0.00 5.14
2553 2764 3.070159 CCATCATGTCACTCTCCGGTATT 59.930 47.826 0.00 0.00 0.00 1.89
2614 2825 7.779798 ACACATGCCCTTTGACTATATATGTTT 59.220 33.333 0.00 0.00 0.00 2.83
2640 2851 7.775093 TCCAGTTCCATCAGGTAATTTATCTTG 59.225 37.037 0.00 0.00 35.89 3.02
2659 2870 6.020971 TCTTGTTAGTTCTTCTACGCATGA 57.979 37.500 0.00 0.00 0.00 3.07
2665 2876 7.979537 TGTTAGTTCTTCTACGCATGATGTAAT 59.020 33.333 0.00 0.00 0.00 1.89
2758 2986 6.586463 TGATGTCGTCTATTGTCTTTCTTGTC 59.414 38.462 0.00 0.00 0.00 3.18
2760 2988 4.916249 GTCGTCTATTGTCTTTCTTGTCGT 59.084 41.667 0.00 0.00 0.00 4.34
2810 3038 1.293498 CTCTGGGTTCAGGGACACG 59.707 63.158 0.00 0.00 44.15 4.49
2817 3045 1.134521 GGTTCAGGGACACGATATGCA 60.135 52.381 0.00 0.00 0.00 3.96
2889 3117 3.987187 GCATTTGCTGATTCCGCG 58.013 55.556 0.00 0.00 38.21 6.46
2969 3197 1.762460 CCGTCCCTGGCTGGTAGAT 60.762 63.158 9.73 0.00 0.00 1.98
3008 3236 8.832458 TCTTTTTACCCTTTCCCTAAATATGG 57.168 34.615 0.00 0.00 0.00 2.74
3050 3281 4.284490 TGTGTATCAGGCTTCTGTCTTCTT 59.716 41.667 0.00 0.00 39.45 2.52
3054 3285 0.952984 AGGCTTCTGTCTTCTTGCGC 60.953 55.000 0.00 0.00 0.00 6.09
3154 3385 6.062749 TGATAGCGGTGTAGTTATCTCTTCT 58.937 40.000 0.00 0.00 35.97 2.85
3163 3394 9.315525 GGTGTAGTTATCTCTTCTAAACAATCC 57.684 37.037 0.00 0.00 0.00 3.01
3299 3530 7.538575 AGTAGCAAGTTAACAGCATTTAATGG 58.461 34.615 20.55 0.00 0.00 3.16
3350 3581 7.971201 AGAAGGAATGAGACATTATATCTGCA 58.029 34.615 0.00 0.00 0.00 4.41
3404 3635 3.012560 GCACTGATGCCCTACCATC 57.987 57.895 0.00 0.00 46.97 3.51
3450 3681 3.016736 GGCAGCTTACCATTTCTTAGCA 58.983 45.455 0.00 0.00 34.37 3.49
3567 3798 7.748691 ATGTTGCATAATTTCCTTGCTTTTT 57.251 28.000 0.00 0.00 37.28 1.94
3648 3893 5.692204 TGAGAACGTCAAATCTGAGAAAGTC 59.308 40.000 0.00 0.00 30.14 3.01
3711 3956 5.999044 ACTTATCTGATCAATGCCAAGAGT 58.001 37.500 0.00 0.00 0.00 3.24
3729 3974 3.253432 AGAGTTCCGGAAAGCAAATTGAC 59.747 43.478 20.79 2.54 0.00 3.18
3736 3981 3.666902 CGGAAAGCAAATTGACGGTACAG 60.667 47.826 0.00 0.00 0.00 2.74
3739 3984 5.049267 GGAAAGCAAATTGACGGTACAGTTA 60.049 40.000 0.00 0.00 0.00 2.24
3745 3990 6.639279 GCAAATTGACGGTACAGTTAACATTT 59.361 34.615 8.61 1.87 0.00 2.32
3751 3996 4.622740 ACGGTACAGTTAACATTTAGCGTC 59.377 41.667 22.18 1.83 41.57 5.19
3756 4001 3.621715 CAGTTAACATTTAGCGTCCCCTC 59.378 47.826 8.61 0.00 0.00 4.30
3761 4006 2.222027 CATTTAGCGTCCCCTCCATTC 58.778 52.381 0.00 0.00 0.00 2.67
3813 4058 6.169094 AGGACACTTCAGACACTATGAATTG 58.831 40.000 4.96 4.96 40.92 2.32
3832 4077 1.202915 TGCAGGCAAGGACTTGATGAA 60.203 47.619 15.76 5.43 42.93 2.57
3859 4104 0.806102 GAGCTGGCGCAATCTAACGA 60.806 55.000 10.83 0.00 39.10 3.85
3940 4185 7.250569 CAAACATATAGTCAACACCAACCATC 58.749 38.462 0.00 0.00 0.00 3.51
3941 4186 6.313519 ACATATAGTCAACACCAACCATCT 57.686 37.500 0.00 0.00 0.00 2.90
3954 4199 3.847621 CCATCTAGTGGCGTACTCG 57.152 57.895 0.00 0.00 42.12 4.18
3955 4200 1.022735 CCATCTAGTGGCGTACTCGT 58.977 55.000 0.00 0.00 42.12 4.18
4102 4347 7.645402 ACAAGTGTTAAAACCTAATACTGTGC 58.355 34.615 0.00 0.00 30.94 4.57
4103 4348 7.283580 ACAAGTGTTAAAACCTAATACTGTGCA 59.716 33.333 0.00 0.00 30.94 4.57
4104 4349 7.435068 AGTGTTAAAACCTAATACTGTGCAG 57.565 36.000 0.00 0.00 29.67 4.41
4105 4350 6.072673 AGTGTTAAAACCTAATACTGTGCAGC 60.073 38.462 0.00 0.00 29.67 5.25
4133 4378 2.281692 GGTGGTTTTACGCCGGGT 60.282 61.111 2.18 1.55 0.00 5.28
4176 4423 7.043059 CGTTCTAAATTGAACTGAGATAGGCTC 60.043 40.741 0.00 0.00 42.82 4.70
4231 4478 5.483937 TCATTAGCTTTGTCTCCTCTTGGTA 59.516 40.000 0.00 0.00 34.23 3.25
4280 4531 9.875675 CTTCATAATAAACTCATTAGCAAGCTC 57.124 33.333 0.00 0.00 0.00 4.09
4295 4546 3.332919 CAAGCTCTGTACAAGCAGTCAT 58.667 45.455 23.12 7.46 42.35 3.06
4301 4552 5.409826 GCTCTGTACAAGCAGTCATTAGTTT 59.590 40.000 18.96 0.00 39.61 2.66
4302 4553 6.073003 GCTCTGTACAAGCAGTCATTAGTTTT 60.073 38.462 18.96 0.00 39.61 2.43
4303 4554 7.189693 TCTGTACAAGCAGTCATTAGTTTTG 57.810 36.000 0.00 0.00 37.70 2.44
4304 4555 6.765989 TCTGTACAAGCAGTCATTAGTTTTGT 59.234 34.615 0.00 0.00 37.70 2.83
4305 4556 7.929245 TCTGTACAAGCAGTCATTAGTTTTGTA 59.071 33.333 0.00 0.00 37.70 2.41
4306 4557 8.083462 TGTACAAGCAGTCATTAGTTTTGTAG 57.917 34.615 0.00 0.00 32.23 2.74
4312 4563 6.649557 AGCAGTCATTAGTTTTGTAGGTACAC 59.350 38.462 0.00 0.00 35.64 2.90
4332 5003 1.072965 CTCCAGACCTCCAGTTTTGCT 59.927 52.381 0.00 0.00 0.00 3.91
4337 5008 1.801178 GACCTCCAGTTTTGCTTCTCG 59.199 52.381 0.00 0.00 0.00 4.04
4351 5022 1.255667 TTCTCGGTGTACCTCTGGCC 61.256 60.000 0.00 0.00 0.00 5.36
4366 5037 0.693049 TGGCCTCAGTTTTCCTCTCC 59.307 55.000 3.32 0.00 0.00 3.71
4369 5040 1.948144 GCCTCAGTTTTCCTCTCCTGC 60.948 57.143 0.00 0.00 0.00 4.85
4395 5072 2.345244 CCTTGCTGTGGAGACGCT 59.655 61.111 0.00 0.00 42.82 5.07
4407 5084 1.669211 GGAGACGCTTCACACCAGTAC 60.669 57.143 0.00 0.00 0.00 2.73
4435 5112 1.812922 CCAGTGAGCGTCATGAGCC 60.813 63.158 11.89 0.00 34.64 4.70
4449 5126 2.738587 TGAGCCCCTGTTGTTACAAA 57.261 45.000 0.00 0.00 32.92 2.83
4450 5127 3.237268 TGAGCCCCTGTTGTTACAAAT 57.763 42.857 0.00 0.00 32.92 2.32
4452 5129 4.076394 TGAGCCCCTGTTGTTACAAATAC 58.924 43.478 0.00 0.00 32.92 1.89
4453 5130 3.078837 AGCCCCTGTTGTTACAAATACG 58.921 45.455 0.00 0.00 32.92 3.06
4455 5132 3.502979 GCCCCTGTTGTTACAAATACGAA 59.497 43.478 0.00 0.00 32.92 3.85
4457 5134 4.155280 CCCCTGTTGTTACAAATACGAAGG 59.845 45.833 0.00 1.02 32.92 3.46
4458 5135 4.758165 CCCTGTTGTTACAAATACGAAGGT 59.242 41.667 0.00 0.00 32.92 3.50
4479 7355 3.303135 TGCGGCGTCTCAAGGACT 61.303 61.111 9.37 0.00 42.44 3.85
4516 7393 0.677731 CACTCCGGACACATGCCATT 60.678 55.000 0.00 0.00 0.00 3.16
4517 7394 0.677731 ACTCCGGACACATGCCATTG 60.678 55.000 0.00 0.00 0.00 2.82
4518 7395 1.996786 CTCCGGACACATGCCATTGC 61.997 60.000 0.00 0.00 38.26 3.56
4519 7396 2.491152 CGGACACATGCCATTGCC 59.509 61.111 0.00 0.00 36.33 4.52
4520 7397 2.341875 CGGACACATGCCATTGCCA 61.342 57.895 0.00 0.00 36.33 4.92
4521 7398 1.669049 CGGACACATGCCATTGCCAT 61.669 55.000 0.00 0.00 36.33 4.40
4522 7399 0.179094 GGACACATGCCATTGCCATG 60.179 55.000 6.09 6.09 36.33 3.66
4523 7400 0.533491 GACACATGCCATTGCCATGT 59.467 50.000 7.40 7.40 38.73 3.21
4524 7401 1.750206 GACACATGCCATTGCCATGTA 59.250 47.619 12.44 0.00 37.22 2.29
4525 7402 1.477700 ACACATGCCATTGCCATGTAC 59.522 47.619 12.44 0.00 37.22 2.90
4526 7403 1.752498 CACATGCCATTGCCATGTACT 59.248 47.619 12.44 0.00 37.22 2.73
4527 7404 2.026641 ACATGCCATTGCCATGTACTC 58.973 47.619 11.27 0.00 37.42 2.59
4528 7405 1.338973 CATGCCATTGCCATGTACTCC 59.661 52.381 0.00 0.00 36.33 3.85
4529 7406 0.395586 TGCCATTGCCATGTACTCCC 60.396 55.000 0.00 0.00 36.33 4.30
4530 7407 0.106519 GCCATTGCCATGTACTCCCT 60.107 55.000 0.00 0.00 0.00 4.20
4531 7408 1.972872 CCATTGCCATGTACTCCCTC 58.027 55.000 0.00 0.00 0.00 4.30
4532 7409 1.477558 CCATTGCCATGTACTCCCTCC 60.478 57.143 0.00 0.00 0.00 4.30
4533 7410 0.469917 ATTGCCATGTACTCCCTCCG 59.530 55.000 0.00 0.00 0.00 4.63
4534 7411 0.907704 TTGCCATGTACTCCCTCCGT 60.908 55.000 0.00 0.00 0.00 4.69
4535 7412 0.907704 TGCCATGTACTCCCTCCGTT 60.908 55.000 0.00 0.00 0.00 4.44
4536 7413 0.179081 GCCATGTACTCCCTCCGTTC 60.179 60.000 0.00 0.00 0.00 3.95
4537 7414 0.102481 CCATGTACTCCCTCCGTTCG 59.898 60.000 0.00 0.00 0.00 3.95
4538 7415 0.102481 CATGTACTCCCTCCGTTCGG 59.898 60.000 4.74 4.74 0.00 4.30
4539 7416 0.033796 ATGTACTCCCTCCGTTCGGA 60.034 55.000 13.34 13.34 0.00 4.55
4540 7417 0.251297 TGTACTCCCTCCGTTCGGAA 60.251 55.000 14.79 0.04 33.41 4.30
4541 7418 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
4542 7419 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
4543 7420 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
4544 7421 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
4545 7422 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
4546 7423 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
4547 7424 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
4548 7425 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
4549 7426 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
4550 7427 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
4551 7428 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
4552 7429 2.928116 CCGTTCGGAATTACTTGTCTCC 59.072 50.000 5.19 0.00 0.00 3.71
4559 7436 5.485662 GGAATTACTTGTCTCCGAAATGG 57.514 43.478 0.00 0.00 40.09 3.16
4573 7450 6.978674 TCCGAAATGGATGTATCTAGAACT 57.021 37.500 0.00 0.00 43.74 3.01
4575 7452 8.473358 TCCGAAATGGATGTATCTAGAACTAA 57.527 34.615 0.00 0.00 43.74 2.24
4576 7453 8.920174 TCCGAAATGGATGTATCTAGAACTAAA 58.080 33.333 0.00 0.00 43.74 1.85
4577 7454 9.542462 CCGAAATGGATGTATCTAGAACTAAAA 57.458 33.333 0.00 0.00 42.00 1.52
4604 7481 8.637196 ACATCTAGATACATCCATTTCTACGA 57.363 34.615 4.54 0.00 0.00 3.43
4605 7482 8.516234 ACATCTAGATACATCCATTTCTACGAC 58.484 37.037 4.54 0.00 0.00 4.34
4606 7483 8.515414 CATCTAGATACATCCATTTCTACGACA 58.485 37.037 4.54 0.00 0.00 4.35
4607 7484 8.459911 TCTAGATACATCCATTTCTACGACAA 57.540 34.615 0.00 0.00 0.00 3.18
4608 7485 8.568794 TCTAGATACATCCATTTCTACGACAAG 58.431 37.037 0.00 0.00 0.00 3.16
4609 7486 7.113658 AGATACATCCATTTCTACGACAAGT 57.886 36.000 0.00 0.00 0.00 3.16
4610 7487 8.234136 AGATACATCCATTTCTACGACAAGTA 57.766 34.615 0.00 0.00 0.00 2.24
4611 7488 8.692710 AGATACATCCATTTCTACGACAAGTAA 58.307 33.333 0.00 0.00 34.45 2.24
4612 7489 9.477484 GATACATCCATTTCTACGACAAGTAAT 57.523 33.333 0.00 0.00 34.45 1.89
4613 7490 9.832445 ATACATCCATTTCTACGACAAGTAATT 57.168 29.630 0.00 0.00 34.45 1.40
4614 7491 8.197988 ACATCCATTTCTACGACAAGTAATTC 57.802 34.615 0.00 0.00 34.45 2.17
4615 7492 7.280205 ACATCCATTTCTACGACAAGTAATTCC 59.720 37.037 0.00 0.00 34.45 3.01
4616 7493 5.808540 TCCATTTCTACGACAAGTAATTCCG 59.191 40.000 0.00 0.00 34.45 4.30
4617 7494 5.006358 CCATTTCTACGACAAGTAATTCCGG 59.994 44.000 0.00 0.00 34.45 5.14
4618 7495 5.389859 TTTCTACGACAAGTAATTCCGGA 57.610 39.130 0.00 0.00 34.45 5.14
4619 7496 4.361451 TCTACGACAAGTAATTCCGGAC 57.639 45.455 1.83 0.00 34.45 4.79
4620 7497 1.986698 ACGACAAGTAATTCCGGACG 58.013 50.000 1.83 3.25 0.00 4.79
4621 7498 1.274596 CGACAAGTAATTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
4622 7499 1.135315 CGACAAGTAATTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
4623 7500 2.537401 GACAAGTAATTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
4624 7501 1.206371 ACAAGTAATTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
4625 7502 0.828677 AAGTAATTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
4631 7508 1.856539 TTCCGGACGGAGGGAGTAGT 61.857 60.000 13.64 0.00 46.06 2.73
4661 7538 0.615850 AGCCCTGCTCCTCTGTTTAC 59.384 55.000 0.00 0.00 30.62 2.01
4693 7572 2.027377 AGAGATGTCAGGGCTTTCACAG 60.027 50.000 0.00 0.00 0.00 3.66
4702 7583 1.692411 GGCTTTCACAGGGTTTCAGT 58.308 50.000 0.00 0.00 0.00 3.41
4739 7621 3.066198 CGGTCCCCTTCCGTTCTT 58.934 61.111 0.00 0.00 42.62 2.52
4748 7630 4.161754 TCCCCTTCCGTTCTTCTCTTTATC 59.838 45.833 0.00 0.00 0.00 1.75
4749 7631 4.162509 CCCCTTCCGTTCTTCTCTTTATCT 59.837 45.833 0.00 0.00 0.00 1.98
4750 7632 5.338463 CCCCTTCCGTTCTTCTCTTTATCTT 60.338 44.000 0.00 0.00 0.00 2.40
4751 7633 6.127140 CCCCTTCCGTTCTTCTCTTTATCTTA 60.127 42.308 0.00 0.00 0.00 2.10
4752 7634 7.419172 CCCCTTCCGTTCTTCTCTTTATCTTAT 60.419 40.741 0.00 0.00 0.00 1.73
4753 7635 7.654116 CCCTTCCGTTCTTCTCTTTATCTTATC 59.346 40.741 0.00 0.00 0.00 1.75
4754 7636 8.417884 CCTTCCGTTCTTCTCTTTATCTTATCT 58.582 37.037 0.00 0.00 0.00 1.98
4755 7637 9.810545 CTTCCGTTCTTCTCTTTATCTTATCTT 57.189 33.333 0.00 0.00 0.00 2.40
4829 7713 1.280710 TCCCAATTAGACGTGCACCAT 59.719 47.619 12.15 0.00 0.00 3.55
4866 7750 2.096819 ACGCATTTGGCCGTTTATAGTG 59.903 45.455 0.00 0.00 40.31 2.74
4906 7790 5.291971 GTGACTGAAAATCAAACTGGCATT 58.708 37.500 0.00 0.00 0.00 3.56
4935 7824 1.801332 GAGAGGCGCTCGTTGTAGA 59.199 57.895 7.64 0.00 35.36 2.59
4936 7825 0.382515 GAGAGGCGCTCGTTGTAGAT 59.617 55.000 7.64 0.00 35.36 1.98
4941 7832 0.584054 GCGCTCGTTGTAGATTTGCG 60.584 55.000 0.00 0.00 43.91 4.85
4951 7842 0.387929 TAGATTTGCGGTAGGCCTCG 59.612 55.000 9.68 9.52 42.61 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 2.920912 GTGACCGAGACCACCCCA 60.921 66.667 0.00 0.00 0.00 4.96
16 17 2.342648 GGTGTGACCGAGACCACC 59.657 66.667 0.00 0.00 37.96 4.61
41 42 2.507992 CGCCTCGTCCTTGCTCAG 60.508 66.667 0.00 0.00 0.00 3.35
64 65 1.035139 CTGCAACTTCTGGTGCCTTT 58.965 50.000 3.53 0.00 0.00 3.11
66 67 1.900498 GCTGCAACTTCTGGTGCCT 60.900 57.895 3.53 0.00 0.00 4.75
194 196 2.020720 TGAACTCGCAAACCATGTGTT 58.979 42.857 0.00 0.00 40.52 3.32
233 235 3.256960 GGGTCCAAGGTCCTGCCA 61.257 66.667 0.00 0.00 40.61 4.92
248 250 1.379044 GTGATGGGCAGACTTGGGG 60.379 63.158 0.00 0.00 0.00 4.96
366 369 0.807496 GAAGCATCTTGCCTGTGGAC 59.193 55.000 0.00 0.00 46.52 4.02
450 454 1.589414 AGGATTTGGACTAGCTGCCT 58.411 50.000 0.00 0.00 0.00 4.75
500 504 9.426837 CAAATTGTCATTGAACCACTGAATATT 57.573 29.630 0.00 0.00 0.00 1.28
571 575 8.641498 AGCAGATTAAGAGGAGAAATGAAAAA 57.359 30.769 0.00 0.00 0.00 1.94
573 577 7.362401 GCAAGCAGATTAAGAGGAGAAATGAAA 60.362 37.037 0.00 0.00 0.00 2.69
575 579 5.587844 GCAAGCAGATTAAGAGGAGAAATGA 59.412 40.000 0.00 0.00 0.00 2.57
577 581 4.886489 GGCAAGCAGATTAAGAGGAGAAAT 59.114 41.667 0.00 0.00 0.00 2.17
582 586 3.939740 ATGGCAAGCAGATTAAGAGGA 57.060 42.857 0.00 0.00 0.00 3.71
586 590 4.737054 ACGAAAATGGCAAGCAGATTAAG 58.263 39.130 0.00 0.00 0.00 1.85
587 591 4.380444 GGACGAAAATGGCAAGCAGATTAA 60.380 41.667 0.00 0.00 0.00 1.40
602 665 5.048782 CACATCAGAGAAAATGGGACGAAAA 60.049 40.000 0.00 0.00 0.00 2.29
606 669 3.125829 CACACATCAGAGAAAATGGGACG 59.874 47.826 0.00 0.00 30.65 4.79
607 670 4.154918 GTCACACATCAGAGAAAATGGGAC 59.845 45.833 0.00 0.00 30.65 4.46
608 671 4.326826 GTCACACATCAGAGAAAATGGGA 58.673 43.478 0.00 0.00 30.65 4.37
609 672 3.441572 GGTCACACATCAGAGAAAATGGG 59.558 47.826 0.00 0.00 32.40 4.00
611 674 5.413523 TCATGGTCACACATCAGAGAAAATG 59.586 40.000 0.00 0.00 0.00 2.32
612 675 5.563592 TCATGGTCACACATCAGAGAAAAT 58.436 37.500 0.00 0.00 0.00 1.82
613 676 4.971939 TCATGGTCACACATCAGAGAAAA 58.028 39.130 0.00 0.00 0.00 2.29
617 680 3.870274 ACATCATGGTCACACATCAGAG 58.130 45.455 0.00 0.00 0.00 3.35
618 681 3.986996 ACATCATGGTCACACATCAGA 57.013 42.857 0.00 0.00 0.00 3.27
620 683 4.018484 TCAACATCATGGTCACACATCA 57.982 40.909 0.00 0.00 0.00 3.07
621 684 4.397103 ACATCAACATCATGGTCACACATC 59.603 41.667 0.00 0.00 0.00 3.06
622 685 4.338012 ACATCAACATCATGGTCACACAT 58.662 39.130 0.00 0.00 0.00 3.21
624 687 4.771590 AACATCAACATCATGGTCACAC 57.228 40.909 0.00 0.00 0.00 3.82
625 688 5.787953 AAAACATCAACATCATGGTCACA 57.212 34.783 0.00 0.00 0.00 3.58
648 711 8.058235 TCATGATCATTATACAGTGGGGAAAAA 58.942 33.333 5.16 0.00 0.00 1.94
649 712 7.581814 TCATGATCATTATACAGTGGGGAAAA 58.418 34.615 5.16 0.00 0.00 2.29
650 713 7.147958 TCATGATCATTATACAGTGGGGAAA 57.852 36.000 5.16 0.00 0.00 3.13
651 714 6.762077 TCATGATCATTATACAGTGGGGAA 57.238 37.500 5.16 0.00 0.00 3.97
652 715 6.732390 AGATCATGATCATTATACAGTGGGGA 59.268 38.462 31.99 0.00 40.22 4.81
653 716 6.822170 CAGATCATGATCATTATACAGTGGGG 59.178 42.308 31.99 5.20 40.22 4.96
654 717 7.392418 ACAGATCATGATCATTATACAGTGGG 58.608 38.462 31.99 10.81 40.22 4.61
655 718 8.843885 AACAGATCATGATCATTATACAGTGG 57.156 34.615 31.99 11.96 40.22 4.00
663 726 9.919416 TTTCCCTAAAACAGATCATGATCATTA 57.081 29.630 31.99 22.65 40.22 1.90
664 727 8.689972 GTTTCCCTAAAACAGATCATGATCATT 58.310 33.333 31.99 23.49 45.49 2.57
665 728 8.230472 GTTTCCCTAAAACAGATCATGATCAT 57.770 34.615 31.99 19.63 45.49 2.45
666 729 7.630242 GTTTCCCTAAAACAGATCATGATCA 57.370 36.000 31.99 13.43 45.49 2.92
678 741 7.892609 ACTTTATCATGGTGTTTCCCTAAAAC 58.107 34.615 0.00 0.00 46.22 2.43
682 745 7.696992 GAAACTTTATCATGGTGTTTCCCTA 57.303 36.000 8.52 0.00 39.99 3.53
725 793 7.727634 AGACAGTATCTATCAGGTTCATCATGA 59.272 37.037 0.00 0.00 41.11 3.07
758 828 9.297037 ACTTGACACTACCAGCTAAAATAAAAT 57.703 29.630 0.00 0.00 0.00 1.82
761 831 7.717875 ACAACTTGACACTACCAGCTAAAATAA 59.282 33.333 0.00 0.00 0.00 1.40
762 832 7.172532 CACAACTTGACACTACCAGCTAAAATA 59.827 37.037 0.00 0.00 0.00 1.40
764 834 5.295787 CACAACTTGACACTACCAGCTAAAA 59.704 40.000 0.00 0.00 0.00 1.52
765 835 4.814234 CACAACTTGACACTACCAGCTAAA 59.186 41.667 0.00 0.00 0.00 1.85
768 838 2.485479 CCACAACTTGACACTACCAGCT 60.485 50.000 0.00 0.00 0.00 4.24
769 839 1.873591 CCACAACTTGACACTACCAGC 59.126 52.381 0.00 0.00 0.00 4.85
770 840 3.131396 GTCCACAACTTGACACTACCAG 58.869 50.000 0.00 0.00 0.00 4.00
772 842 2.158871 TGGTCCACAACTTGACACTACC 60.159 50.000 0.00 0.00 33.09 3.18
773 843 3.131396 CTGGTCCACAACTTGACACTAC 58.869 50.000 0.00 0.00 33.09 2.73
801 907 3.141398 CAGAGAACAGCTTGCCAGTTAA 58.859 45.455 0.00 0.00 0.00 2.01
802 908 2.368548 TCAGAGAACAGCTTGCCAGTTA 59.631 45.455 0.00 0.00 0.00 2.24
803 909 1.141657 TCAGAGAACAGCTTGCCAGTT 59.858 47.619 0.00 1.61 0.00 3.16
804 910 0.761187 TCAGAGAACAGCTTGCCAGT 59.239 50.000 0.00 0.00 0.00 4.00
805 911 1.001746 TCTCAGAGAACAGCTTGCCAG 59.998 52.381 0.00 0.00 0.00 4.85
806 912 1.001746 CTCTCAGAGAACAGCTTGCCA 59.998 52.381 0.00 0.00 0.00 4.92
807 913 1.274728 TCTCTCAGAGAACAGCTTGCC 59.725 52.381 0.32 0.00 35.59 4.52
808 914 2.739885 TCTCTCAGAGAACAGCTTGC 57.260 50.000 0.32 0.00 35.59 4.01
809 915 6.095300 TCTCTAATCTCTCAGAGAACAGCTTG 59.905 42.308 8.90 3.50 43.29 4.01
810 916 6.186957 TCTCTAATCTCTCAGAGAACAGCTT 58.813 40.000 8.90 0.24 43.29 3.74
811 917 5.754782 TCTCTAATCTCTCAGAGAACAGCT 58.245 41.667 8.90 0.00 43.29 4.24
812 918 5.009010 CCTCTCTAATCTCTCAGAGAACAGC 59.991 48.000 8.90 0.00 45.01 4.40
813 919 6.122277 ACCTCTCTAATCTCTCAGAGAACAG 58.878 44.000 8.90 8.90 45.01 3.16
814 920 6.073447 ACCTCTCTAATCTCTCAGAGAACA 57.927 41.667 8.90 0.00 45.01 3.18
815 921 7.404671 AAACCTCTCTAATCTCTCAGAGAAC 57.595 40.000 8.90 0.00 45.01 3.01
816 922 8.429237 AAAAACCTCTCTAATCTCTCAGAGAA 57.571 34.615 8.90 0.00 45.01 2.87
817 923 7.123547 GGAAAAACCTCTCTAATCTCTCAGAGA 59.876 40.741 6.90 6.90 43.87 3.10
818 924 7.093552 TGGAAAAACCTCTCTAATCTCTCAGAG 60.094 40.741 0.00 0.00 39.86 3.35
819 925 6.726299 TGGAAAAACCTCTCTAATCTCTCAGA 59.274 38.462 0.00 0.00 39.86 3.27
820 926 6.940739 TGGAAAAACCTCTCTAATCTCTCAG 58.059 40.000 0.00 0.00 39.86 3.35
821 927 6.498651 ACTGGAAAAACCTCTCTAATCTCTCA 59.501 38.462 0.00 0.00 39.86 3.27
822 928 6.941857 ACTGGAAAAACCTCTCTAATCTCTC 58.058 40.000 0.00 0.00 39.86 3.20
823 929 6.943899 ACTGGAAAAACCTCTCTAATCTCT 57.056 37.500 0.00 0.00 39.86 3.10
824 930 7.162082 TCAACTGGAAAAACCTCTCTAATCTC 58.838 38.462 0.00 0.00 39.86 2.75
825 931 7.079451 TCAACTGGAAAAACCTCTCTAATCT 57.921 36.000 0.00 0.00 39.86 2.40
826 932 7.745620 TTCAACTGGAAAAACCTCTCTAATC 57.254 36.000 0.00 0.00 39.86 1.75
827 933 8.712228 AATTCAACTGGAAAAACCTCTCTAAT 57.288 30.769 0.00 0.00 39.39 1.73
835 941 5.566826 GCCCTAGAATTCAACTGGAAAAACC 60.567 44.000 8.44 0.00 39.39 3.27
837 943 5.144100 TGCCCTAGAATTCAACTGGAAAAA 58.856 37.500 8.44 0.00 39.39 1.94
838 944 4.735369 TGCCCTAGAATTCAACTGGAAAA 58.265 39.130 8.44 0.00 39.39 2.29
842 948 3.690460 AGTTGCCCTAGAATTCAACTGG 58.310 45.455 8.44 3.76 44.97 4.00
846 952 6.976934 AAAAGAAGTTGCCCTAGAATTCAA 57.023 33.333 8.44 0.00 0.00 2.69
894 1020 3.169908 GTTGCCTTAAAATTCCCCCTCA 58.830 45.455 0.00 0.00 0.00 3.86
899 1025 4.382685 GGCCTTAGTTGCCTTAAAATTCCC 60.383 45.833 0.00 0.00 45.70 3.97
911 1037 4.036852 GTCCAAATATCTGGCCTTAGTTGC 59.963 45.833 3.32 0.00 36.32 4.17
914 1040 3.181454 CCGTCCAAATATCTGGCCTTAGT 60.181 47.826 3.32 0.00 36.32 2.24
921 1047 0.182537 TGGCCCGTCCAAATATCTGG 59.817 55.000 0.00 0.00 43.21 3.86
949 1075 5.712152 AAAACTTCATCTGGGCTTTACTG 57.288 39.130 0.00 0.00 0.00 2.74
980 1106 7.728532 AGCCCATCTTAAAAGTTCTCCTAAAAA 59.271 33.333 0.00 0.00 0.00 1.94
981 1107 7.238710 AGCCCATCTTAAAAGTTCTCCTAAAA 58.761 34.615 0.00 0.00 0.00 1.52
982 1108 6.790319 AGCCCATCTTAAAAGTTCTCCTAAA 58.210 36.000 0.00 0.00 0.00 1.85
983 1109 6.388619 AGCCCATCTTAAAAGTTCTCCTAA 57.611 37.500 0.00 0.00 0.00 2.69
984 1110 6.388619 AAGCCCATCTTAAAAGTTCTCCTA 57.611 37.500 0.00 0.00 32.10 2.94
985 1111 4.936685 AGCCCATCTTAAAAGTTCTCCT 57.063 40.909 0.00 0.00 0.00 3.69
986 1112 5.476945 TCAAAGCCCATCTTAAAAGTTCTCC 59.523 40.000 0.00 0.00 33.88 3.71
987 1113 6.207614 AGTCAAAGCCCATCTTAAAAGTTCTC 59.792 38.462 0.00 0.00 33.88 2.87
988 1114 6.015940 CAGTCAAAGCCCATCTTAAAAGTTCT 60.016 38.462 0.00 0.00 33.88 3.01
989 1115 6.152379 CAGTCAAAGCCCATCTTAAAAGTTC 58.848 40.000 0.00 0.00 33.88 3.01
990 1116 5.011023 CCAGTCAAAGCCCATCTTAAAAGTT 59.989 40.000 0.00 0.00 33.88 2.66
991 1117 4.524328 CCAGTCAAAGCCCATCTTAAAAGT 59.476 41.667 0.00 0.00 33.88 2.66
992 1118 4.619160 GCCAGTCAAAGCCCATCTTAAAAG 60.619 45.833 0.00 0.00 33.88 2.27
993 1119 3.258123 GCCAGTCAAAGCCCATCTTAAAA 59.742 43.478 0.00 0.00 33.88 1.52
1026 1152 2.550978 GGGATCGTGACCACTACATTG 58.449 52.381 0.00 0.00 0.00 2.82
1027 1153 1.136305 CGGGATCGTGACCACTACATT 59.864 52.381 0.00 0.00 0.00 2.71
1028 1154 0.744874 CGGGATCGTGACCACTACAT 59.255 55.000 0.00 0.00 0.00 2.29
1029 1155 1.940883 GCGGGATCGTGACCACTACA 61.941 60.000 0.00 0.00 38.89 2.74
1051 1178 1.731720 GTCTGTCTGACCAATGGAGC 58.268 55.000 6.16 0.00 39.69 4.70
1060 1187 2.024319 GTGCGCTGGTCTGTCTGAC 61.024 63.158 9.73 0.00 44.63 3.51
1063 1190 4.363990 CCGTGCGCTGGTCTGTCT 62.364 66.667 9.73 0.00 0.00 3.41
1065 1192 4.664677 GTCCGTGCGCTGGTCTGT 62.665 66.667 9.73 0.00 0.00 3.41
1170 1315 1.004511 ACGGTAGCAGGACTCACTAGT 59.995 52.381 0.00 0.00 39.21 2.57
1182 1327 0.602638 CAAACAGCAGGACGGTAGCA 60.603 55.000 0.00 0.00 0.00 3.49
1186 1331 0.393808 AACACAAACAGCAGGACGGT 60.394 50.000 0.00 0.00 0.00 4.83
1191 1336 1.008538 GCGGAACACAAACAGCAGG 60.009 57.895 0.00 0.00 0.00 4.85
1233 1379 1.812686 AAAGCAGTACACGAGGCGGA 61.813 55.000 0.00 0.00 0.00 5.54
1255 1401 1.691434 GCCAACAACTTCCCAAATCCA 59.309 47.619 0.00 0.00 0.00 3.41
1261 1407 2.909965 GCGGCCAACAACTTCCCA 60.910 61.111 2.24 0.00 0.00 4.37
1269 1415 0.239879 GATTTTTCTCGCGGCCAACA 59.760 50.000 6.13 0.00 0.00 3.33
1332 1487 3.245336 CCCTACATCTACTCCTCCTACCC 60.245 56.522 0.00 0.00 0.00 3.69
1360 1515 7.720442 TCCGATATGATATAGCCATTTCTCTG 58.280 38.462 0.00 0.00 0.00 3.35
1373 1528 4.383850 GCACAGAGCTCCGATATGATAT 57.616 45.455 10.93 0.00 41.15 1.63
1374 1529 3.857549 GCACAGAGCTCCGATATGATA 57.142 47.619 10.93 0.00 41.15 2.15
1375 1530 2.739885 GCACAGAGCTCCGATATGAT 57.260 50.000 10.93 0.00 41.15 2.45
1403 1560 1.076533 CCGATCTTCCCAACGACACG 61.077 60.000 0.00 0.00 0.00 4.49
1435 1592 7.605410 TTAAAATTCCACACTAATCGAGACC 57.395 36.000 0.00 0.00 0.00 3.85
1469 1626 0.854705 ACGAGTTCGCGTTTTACACC 59.145 50.000 5.77 0.00 42.71 4.16
1486 1643 8.601476 GGGAGTACTATTTTTCATGAAACTACG 58.399 37.037 20.35 11.68 0.00 3.51
1493 1650 5.424252 ACGGAGGGAGTACTATTTTTCATGA 59.576 40.000 0.00 0.00 0.00 3.07
1494 1651 5.671493 ACGGAGGGAGTACTATTTTTCATG 58.329 41.667 0.00 0.00 0.00 3.07
1495 1652 5.163332 GGACGGAGGGAGTACTATTTTTCAT 60.163 44.000 0.00 0.00 0.00 2.57
1496 1653 4.161001 GGACGGAGGGAGTACTATTTTTCA 59.839 45.833 0.00 0.00 0.00 2.69
1498 1655 3.453717 GGGACGGAGGGAGTACTATTTTT 59.546 47.826 0.00 0.00 0.00 1.94
1503 1660 1.002069 TTGGGACGGAGGGAGTACTA 58.998 55.000 0.00 0.00 0.00 1.82
1504 1661 0.115745 TTTGGGACGGAGGGAGTACT 59.884 55.000 0.00 0.00 0.00 2.73
1505 1662 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
1506 1663 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
1507 1664 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
1508 1665 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
1509 1666 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
1510 1667 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
1511 1668 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
1512 1669 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
1513 1670 4.069304 CAAGACACTTATTTTGGGACGGA 58.931 43.478 0.00 0.00 0.00 4.69
1514 1671 4.069304 TCAAGACACTTATTTTGGGACGG 58.931 43.478 0.00 0.00 0.00 4.79
1515 1672 4.378459 GCTCAAGACACTTATTTTGGGACG 60.378 45.833 0.00 0.00 0.00 4.79
1516 1673 4.762251 AGCTCAAGACACTTATTTTGGGAC 59.238 41.667 0.00 0.00 0.00 4.46
1517 1674 4.985538 AGCTCAAGACACTTATTTTGGGA 58.014 39.130 0.00 0.00 0.00 4.37
1518 1675 5.712152 AAGCTCAAGACACTTATTTTGGG 57.288 39.130 0.00 0.00 0.00 4.12
1519 1676 7.440523 ACTAAGCTCAAGACACTTATTTTGG 57.559 36.000 3.19 0.00 0.00 3.28
1520 1677 8.988934 TGTACTAAGCTCAAGACACTTATTTTG 58.011 33.333 3.19 0.00 0.00 2.44
1521 1678 9.555727 TTGTACTAAGCTCAAGACACTTATTTT 57.444 29.630 3.19 0.00 0.00 1.82
1522 1679 9.555727 TTTGTACTAAGCTCAAGACACTTATTT 57.444 29.630 3.19 0.00 0.00 1.40
1523 1680 9.726438 ATTTGTACTAAGCTCAAGACACTTATT 57.274 29.630 3.19 0.00 0.00 1.40
1524 1681 9.726438 AATTTGTACTAAGCTCAAGACACTTAT 57.274 29.630 3.19 0.00 0.00 1.73
1525 1682 9.555727 AAATTTGTACTAAGCTCAAGACACTTA 57.444 29.630 3.19 0.00 0.00 2.24
1526 1683 8.345565 CAAATTTGTACTAAGCTCAAGACACTT 58.654 33.333 10.15 0.00 0.00 3.16
1527 1684 7.499232 ACAAATTTGTACTAAGCTCAAGACACT 59.501 33.333 22.10 0.00 40.16 3.55
1528 1685 7.639945 ACAAATTTGTACTAAGCTCAAGACAC 58.360 34.615 22.10 2.09 40.16 3.67
1529 1686 7.801716 ACAAATTTGTACTAAGCTCAAGACA 57.198 32.000 22.10 0.00 40.16 3.41
1553 1710 7.881751 TGTCTCAACTTTGTACTAGCTCTAGTA 59.118 37.037 11.59 11.59 43.98 1.82
1555 1712 7.024768 GTGTCTCAACTTTGTACTAGCTCTAG 58.975 42.308 0.00 2.55 39.04 2.43
1556 1713 6.715718 AGTGTCTCAACTTTGTACTAGCTCTA 59.284 38.462 0.00 0.00 0.00 2.43
1557 1714 5.536916 AGTGTCTCAACTTTGTACTAGCTCT 59.463 40.000 0.00 0.00 0.00 4.09
1558 1715 5.774630 AGTGTCTCAACTTTGTACTAGCTC 58.225 41.667 0.00 0.00 0.00 4.09
1559 1716 5.793030 AGTGTCTCAACTTTGTACTAGCT 57.207 39.130 0.00 0.00 0.00 3.32
1560 1717 8.535690 AATAAGTGTCTCAACTTTGTACTAGC 57.464 34.615 0.00 0.00 40.77 3.42
1563 1720 8.621286 CCAAAATAAGTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
1564 1721 7.860872 CCCAAAATAAGTGTCTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
1565 1722 7.776030 TCCCAAAATAAGTGTCTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
1566 1723 6.605594 TCCCAAAATAAGTGTCTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
1567 1724 6.918022 GTCCCAAAATAAGTGTCTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
1568 1725 6.605594 TGTCCCAAAATAAGTGTCTCAACTTT 59.394 34.615 0.00 0.00 40.77 2.66
1569 1726 6.126409 TGTCCCAAAATAAGTGTCTCAACTT 58.874 36.000 0.00 0.00 42.89 2.66
1570 1727 5.690865 TGTCCCAAAATAAGTGTCTCAACT 58.309 37.500 0.00 0.00 0.00 3.16
1571 1728 5.763204 TCTGTCCCAAAATAAGTGTCTCAAC 59.237 40.000 0.00 0.00 0.00 3.18
1572 1729 5.935945 TCTGTCCCAAAATAAGTGTCTCAA 58.064 37.500 0.00 0.00 0.00 3.02
1573 1730 5.513094 CCTCTGTCCCAAAATAAGTGTCTCA 60.513 44.000 0.00 0.00 0.00 3.27
1574 1731 4.938226 CCTCTGTCCCAAAATAAGTGTCTC 59.062 45.833 0.00 0.00 0.00 3.36
1575 1732 4.263506 CCCTCTGTCCCAAAATAAGTGTCT 60.264 45.833 0.00 0.00 0.00 3.41
1576 1733 4.010349 CCCTCTGTCCCAAAATAAGTGTC 58.990 47.826 0.00 0.00 0.00 3.67
1577 1734 3.655777 TCCCTCTGTCCCAAAATAAGTGT 59.344 43.478 0.00 0.00 0.00 3.55
1578 1735 4.263506 ACTCCCTCTGTCCCAAAATAAGTG 60.264 45.833 0.00 0.00 0.00 3.16
1579 1736 3.916989 ACTCCCTCTGTCCCAAAATAAGT 59.083 43.478 0.00 0.00 0.00 2.24
1580 1737 4.576330 ACTCCCTCTGTCCCAAAATAAG 57.424 45.455 0.00 0.00 0.00 1.73
1581 1738 5.098663 ACTACTCCCTCTGTCCCAAAATAA 58.901 41.667 0.00 0.00 0.00 1.40
1582 1739 4.695606 ACTACTCCCTCTGTCCCAAAATA 58.304 43.478 0.00 0.00 0.00 1.40
1583 1740 3.532102 ACTACTCCCTCTGTCCCAAAAT 58.468 45.455 0.00 0.00 0.00 1.82
1584 1741 2.986050 ACTACTCCCTCTGTCCCAAAA 58.014 47.619 0.00 0.00 0.00 2.44
1585 1742 2.715763 ACTACTCCCTCTGTCCCAAA 57.284 50.000 0.00 0.00 0.00 3.28
1586 1743 5.681494 ATATACTACTCCCTCTGTCCCAA 57.319 43.478 0.00 0.00 0.00 4.12
1587 1744 5.681494 AATATACTACTCCCTCTGTCCCA 57.319 43.478 0.00 0.00 0.00 4.37
1588 1745 5.183522 CGAAATATACTACTCCCTCTGTCCC 59.816 48.000 0.00 0.00 0.00 4.46
1589 1746 6.002704 TCGAAATATACTACTCCCTCTGTCC 58.997 44.000 0.00 0.00 0.00 4.02
1590 1747 7.690952 ATCGAAATATACTACTCCCTCTGTC 57.309 40.000 0.00 0.00 0.00 3.51
1591 1748 7.506261 ACAATCGAAATATACTACTCCCTCTGT 59.494 37.037 0.00 0.00 0.00 3.41
1592 1749 7.887381 ACAATCGAAATATACTACTCCCTCTG 58.113 38.462 0.00 0.00 0.00 3.35
1593 1750 8.480133 AACAATCGAAATATACTACTCCCTCT 57.520 34.615 0.00 0.00 0.00 3.69
1594 1751 9.194271 GAAACAATCGAAATATACTACTCCCTC 57.806 37.037 0.00 0.00 0.00 4.30
1595 1752 8.925338 AGAAACAATCGAAATATACTACTCCCT 58.075 33.333 0.00 0.00 0.00 4.20
1596 1753 8.979574 CAGAAACAATCGAAATATACTACTCCC 58.020 37.037 0.00 0.00 0.00 4.30
1597 1754 8.488764 GCAGAAACAATCGAAATATACTACTCC 58.511 37.037 0.00 0.00 0.00 3.85
1598 1755 9.250624 AGCAGAAACAATCGAAATATACTACTC 57.749 33.333 0.00 0.00 0.00 2.59
1599 1756 9.601217 AAGCAGAAACAATCGAAATATACTACT 57.399 29.630 0.00 0.00 0.00 2.57
1600 1757 9.851043 GAAGCAGAAACAATCGAAATATACTAC 57.149 33.333 0.00 0.00 0.00 2.73
1601 1758 9.042008 GGAAGCAGAAACAATCGAAATATACTA 57.958 33.333 0.00 0.00 0.00 1.82
1602 1759 7.254455 CGGAAGCAGAAACAATCGAAATATACT 60.254 37.037 0.00 0.00 0.00 2.12
1603 1760 6.846283 CGGAAGCAGAAACAATCGAAATATAC 59.154 38.462 0.00 0.00 0.00 1.47
1620 1777 1.363744 GACTTCACCATCGGAAGCAG 58.636 55.000 0.00 0.00 44.35 4.24
1621 1778 0.036388 GGACTTCACCATCGGAAGCA 60.036 55.000 0.00 0.00 44.35 3.91
1622 1779 1.084370 CGGACTTCACCATCGGAAGC 61.084 60.000 0.00 0.00 44.35 3.86
1623 1780 0.530744 TCGGACTTCACCATCGGAAG 59.469 55.000 0.00 0.00 45.63 3.46
1624 1781 1.191535 ATCGGACTTCACCATCGGAA 58.808 50.000 0.00 0.00 0.00 4.30
1626 1783 1.290203 CAATCGGACTTCACCATCGG 58.710 55.000 0.00 0.00 0.00 4.18
1627 1784 0.652592 GCAATCGGACTTCACCATCG 59.347 55.000 0.00 0.00 0.00 3.84
1628 1785 1.398390 GTGCAATCGGACTTCACCATC 59.602 52.381 0.00 0.00 0.00 3.51
1629 1786 1.003580 AGTGCAATCGGACTTCACCAT 59.996 47.619 0.00 0.00 41.76 3.55
1630 1787 0.396435 AGTGCAATCGGACTTCACCA 59.604 50.000 0.00 0.00 41.76 4.17
1631 1788 3.233355 AGTGCAATCGGACTTCACC 57.767 52.632 0.00 0.00 41.76 4.02
1637 1794 2.034053 TCACCAAAAAGTGCAATCGGAC 59.966 45.455 0.00 0.00 37.68 4.79
1638 1795 2.302260 TCACCAAAAAGTGCAATCGGA 58.698 42.857 0.00 0.00 37.68 4.55
1639 1796 2.791383 TCACCAAAAAGTGCAATCGG 57.209 45.000 0.00 0.00 37.68 4.18
1646 1803 2.878406 ACGACAGGATCACCAAAAAGTG 59.122 45.455 0.00 0.00 38.94 3.16
1659 1829 2.238646 AGGCCAAAATATCACGACAGGA 59.761 45.455 5.01 0.00 0.00 3.86
1712 1882 2.468831 CAATAGTCTCTCGCTGCTTCC 58.531 52.381 0.00 0.00 0.00 3.46
1754 1924 3.331294 AGAGGAGTACGGTATGGCTAGAT 59.669 47.826 0.00 0.00 0.00 1.98
1799 1996 6.333416 TGATCTAATCTTCTGTTTCTGGTCG 58.667 40.000 0.00 0.00 0.00 4.79
1811 2008 9.678260 ATTAAGCCATGGTATGATCTAATCTTC 57.322 33.333 14.67 0.00 0.00 2.87
1814 2011 9.050601 GCTATTAAGCCATGGTATGATCTAATC 57.949 37.037 14.67 0.00 43.40 1.75
1833 2030 8.705594 AGCATAACTGAAGTAGGAAGCTATTAA 58.294 33.333 0.00 0.00 0.00 1.40
1834 2031 8.251383 AGCATAACTGAAGTAGGAAGCTATTA 57.749 34.615 0.00 0.00 0.00 0.98
1835 2032 7.070571 AGAGCATAACTGAAGTAGGAAGCTATT 59.929 37.037 0.00 0.00 0.00 1.73
1839 2036 5.017294 AGAGCATAACTGAAGTAGGAAGC 57.983 43.478 0.00 0.00 0.00 3.86
1841 2038 6.605471 TGAAGAGCATAACTGAAGTAGGAA 57.395 37.500 0.00 0.00 0.00 3.36
1847 2044 7.789273 ATGAGAATGAAGAGCATAACTGAAG 57.211 36.000 0.00 0.00 35.78 3.02
1860 2069 6.564709 TTGACTGAACCAATGAGAATGAAG 57.435 37.500 0.00 0.00 0.00 3.02
1883 2092 7.275560 GGCGAAAGAAGTGCAAACAATTATAAT 59.724 33.333 0.00 0.00 33.46 1.28
2066 2275 2.742053 ACACATCATGACTAAACGGCAC 59.258 45.455 0.00 0.00 0.00 5.01
2082 2291 8.631797 TGCAGCATCAAATGTAAATATACACAT 58.368 29.630 0.00 0.00 44.47 3.21
2126 2337 2.156917 CTCTGCATGCTCCAGAAACAA 58.843 47.619 20.33 0.00 38.73 2.83
2256 2467 8.105829 CCTAGCCATGGAGAGTAAAATGATAAT 58.894 37.037 18.40 0.00 0.00 1.28
2257 2468 7.072454 ACCTAGCCATGGAGAGTAAAATGATAA 59.928 37.037 18.40 0.00 0.00 1.75
2258 2469 6.558775 ACCTAGCCATGGAGAGTAAAATGATA 59.441 38.462 18.40 0.00 0.00 2.15
2261 2472 4.818546 CACCTAGCCATGGAGAGTAAAATG 59.181 45.833 18.40 0.02 0.00 2.32
2481 2692 0.730840 TTGCATCGCATTCAGCAGAG 59.269 50.000 0.00 0.00 46.13 3.35
2487 2698 0.810648 GGACCTTTGCATCGCATTCA 59.189 50.000 0.00 0.00 38.76 2.57
2493 2704 1.434555 TAACACGGACCTTTGCATCG 58.565 50.000 0.00 0.00 0.00 3.84
2549 2760 6.817140 ACGGTCTGGTATTTTCTGAAGAATAC 59.183 38.462 17.58 17.58 37.78 1.89
2553 2764 4.566004 CACGGTCTGGTATTTTCTGAAGA 58.434 43.478 0.00 0.00 0.00 2.87
2614 2825 7.451731 AGATAAATTACCTGATGGAACTGGA 57.548 36.000 0.00 0.00 37.04 3.86
2640 2851 7.751047 TTACATCATGCGTAGAAGAACTAAC 57.249 36.000 0.00 0.00 32.49 2.34
2659 2870 6.167685 ACTTGAATGCATGCACAAATTACAT 58.832 32.000 25.37 0.00 0.00 2.29
2665 2876 2.544686 GCAACTTGAATGCATGCACAAA 59.455 40.909 25.37 16.12 43.29 2.83
2740 2968 4.447724 TGCACGACAAGAAAGACAATAGAC 59.552 41.667 0.00 0.00 0.00 2.59
2741 2969 4.627058 TGCACGACAAGAAAGACAATAGA 58.373 39.130 0.00 0.00 0.00 1.98
2742 2970 4.990543 TGCACGACAAGAAAGACAATAG 57.009 40.909 0.00 0.00 0.00 1.73
2743 2971 5.688823 CAATGCACGACAAGAAAGACAATA 58.311 37.500 0.00 0.00 0.00 1.90
2744 2972 4.539870 CAATGCACGACAAGAAAGACAAT 58.460 39.130 0.00 0.00 0.00 2.71
2745 2973 3.791789 GCAATGCACGACAAGAAAGACAA 60.792 43.478 0.00 0.00 0.00 3.18
2746 2974 2.286950 GCAATGCACGACAAGAAAGACA 60.287 45.455 0.00 0.00 0.00 3.41
2747 2975 2.031682 AGCAATGCACGACAAGAAAGAC 60.032 45.455 8.35 0.00 0.00 3.01
2748 2976 2.221169 AGCAATGCACGACAAGAAAGA 58.779 42.857 8.35 0.00 0.00 2.52
2749 2977 2.693797 AGCAATGCACGACAAGAAAG 57.306 45.000 8.35 0.00 0.00 2.62
2775 3003 0.798776 GAGCATTCCTGACGTTGGTG 59.201 55.000 8.13 2.66 0.00 4.17
2817 3045 3.130264 TGCCACTGCAACTCCATTT 57.870 47.368 0.00 0.00 46.66 2.32
2926 3154 1.404851 GCCTCCTCTTGCAGACAGTAC 60.405 57.143 0.00 0.00 0.00 2.73
2969 3197 7.182060 AGGGTAAAAAGAAATATCAGGCAGAA 58.818 34.615 0.00 0.00 0.00 3.02
3008 3236 9.197694 GATACACACAGTATGGAAGATGAATAC 57.802 37.037 0.00 0.00 43.39 1.89
3050 3281 2.270923 CAGCAGTACAATAGAAGCGCA 58.729 47.619 11.47 0.00 0.00 6.09
3154 3385 4.038642 GGGAAAAGCACACTGGATTGTTTA 59.961 41.667 0.00 0.00 0.00 2.01
3163 3394 2.957491 TTGTTGGGAAAAGCACACTG 57.043 45.000 0.00 0.00 0.00 3.66
3299 3530 5.508200 TTTAACCATCCAGAAACACACAC 57.492 39.130 0.00 0.00 0.00 3.82
3404 3635 2.544685 CTGGAGTGAGCTTTGATACCG 58.455 52.381 0.00 0.00 0.00 4.02
3450 3681 7.234355 GGACAAATTTACCATCCTCATATCCT 58.766 38.462 8.21 0.00 0.00 3.24
3567 3798 5.194132 AGGGTAGCTAAAGACTAGAGAGGAA 59.806 44.000 0.00 0.00 0.00 3.36
3568 3799 4.727841 AGGGTAGCTAAAGACTAGAGAGGA 59.272 45.833 0.00 0.00 0.00 3.71
3569 3800 5.056553 AGGGTAGCTAAAGACTAGAGAGG 57.943 47.826 0.00 0.00 0.00 3.69
3573 3804 9.705103 TGTAATAAAGGGTAGCTAAAGACTAGA 57.295 33.333 0.00 0.00 0.00 2.43
3576 3807 8.599792 TGTTGTAATAAAGGGTAGCTAAAGACT 58.400 33.333 0.00 0.00 0.00 3.24
3577 3808 8.782339 TGTTGTAATAAAGGGTAGCTAAAGAC 57.218 34.615 0.00 0.00 0.00 3.01
3578 3809 9.969001 ATTGTTGTAATAAAGGGTAGCTAAAGA 57.031 29.630 0.00 0.00 0.00 2.52
3581 3812 9.523168 ACAATTGTTGTAATAAAGGGTAGCTAA 57.477 29.630 4.92 0.00 43.27 3.09
3582 3813 9.523168 AACAATTGTTGTAATAAAGGGTAGCTA 57.477 29.630 22.71 0.00 44.59 3.32
3583 3814 8.417273 AACAATTGTTGTAATAAAGGGTAGCT 57.583 30.769 22.71 0.00 44.59 3.32
3648 3893 1.178276 ACTGCAAGGGTAGAGACTCG 58.822 55.000 0.00 0.00 39.30 4.18
3711 3956 1.268352 CCGTCAATTTGCTTTCCGGAA 59.732 47.619 14.35 14.35 36.12 4.30
3729 3974 4.032104 GGACGCTAAATGTTAACTGTACCG 59.968 45.833 7.22 5.55 0.00 4.02
3736 3981 2.941064 GGAGGGGACGCTAAATGTTAAC 59.059 50.000 0.00 0.00 0.00 2.01
3739 3984 0.988832 TGGAGGGGACGCTAAATGTT 59.011 50.000 0.00 0.00 0.00 2.71
3745 3990 1.507140 AATGAATGGAGGGGACGCTA 58.493 50.000 0.00 0.00 0.00 4.26
3751 3996 5.893255 TCAAACAGAATAATGAATGGAGGGG 59.107 40.000 0.00 0.00 0.00 4.79
3761 4006 8.853345 CGTTCCAGAAAATCAAACAGAATAATG 58.147 33.333 0.00 0.00 0.00 1.90
3813 4058 1.538047 TTCATCAAGTCCTTGCCTGC 58.462 50.000 2.09 0.00 40.24 4.85
3832 4077 0.391130 TTGCGCCAGCTCGATTAGTT 60.391 50.000 4.18 0.00 45.42 2.24
3859 4104 1.228337 TTGCTGCTGTCTGGCATGT 60.228 52.632 0.00 0.00 41.63 3.21
3940 4185 3.364023 CAGAAAAACGAGTACGCCACTAG 59.636 47.826 0.00 0.00 43.96 2.57
3941 4186 3.243501 ACAGAAAAACGAGTACGCCACTA 60.244 43.478 0.00 0.00 43.96 2.74
3946 4191 1.783140 ACGACAGAAAAACGAGTACGC 59.217 47.619 0.00 0.00 43.96 4.42
3947 4192 3.483196 TCAACGACAGAAAAACGAGTACG 59.517 43.478 0.00 0.00 45.75 3.67
3948 4193 5.005107 ACTTCAACGACAGAAAAACGAGTAC 59.995 40.000 0.00 0.00 0.00 2.73
3950 4195 3.930848 ACTTCAACGACAGAAAAACGAGT 59.069 39.130 0.00 0.00 0.00 4.18
3951 4196 4.516092 ACTTCAACGACAGAAAAACGAG 57.484 40.909 0.00 0.00 0.00 4.18
3952 4197 4.863689 TGTACTTCAACGACAGAAAAACGA 59.136 37.500 0.00 0.00 0.00 3.85
3953 4198 5.133707 TGTACTTCAACGACAGAAAAACG 57.866 39.130 0.00 0.00 0.00 3.60
3954 4199 5.395486 GCATGTACTTCAACGACAGAAAAAC 59.605 40.000 0.00 0.00 0.00 2.43
3955 4200 5.504994 GGCATGTACTTCAACGACAGAAAAA 60.505 40.000 0.00 0.00 0.00 1.94
4046 4291 4.717280 AGAATGAGAACTCCTCGGGTAAAT 59.283 41.667 0.00 0.00 44.92 1.40
4088 4333 2.359900 GCAGCTGCACAGTATTAGGTT 58.640 47.619 33.36 0.00 41.59 3.50
4089 4334 2.029838 GCAGCTGCACAGTATTAGGT 57.970 50.000 33.36 0.00 41.59 3.08
4101 4346 2.357517 ACCGTACACTGCAGCTGC 60.358 61.111 31.89 31.89 42.50 5.25
4102 4347 2.029288 CCACCGTACACTGCAGCTG 61.029 63.158 15.27 10.11 0.00 4.24
4103 4348 2.040009 AACCACCGTACACTGCAGCT 62.040 55.000 15.27 0.98 0.00 4.24
4104 4349 1.164041 AAACCACCGTACACTGCAGC 61.164 55.000 15.27 0.00 0.00 5.25
4105 4350 1.305201 AAAACCACCGTACACTGCAG 58.695 50.000 13.48 13.48 0.00 4.41
4133 4378 3.451178 AGAACGCAAAAGCCTATCTAGGA 59.549 43.478 7.46 0.00 46.63 2.94
4176 4423 1.064389 GTTCAGGAAGGAGATTGGGGG 60.064 57.143 0.00 0.00 0.00 5.40
4280 4531 6.959361 ACAAAACTAATGACTGCTTGTACAG 58.041 36.000 0.00 0.00 43.59 2.74
4295 4546 6.239402 GGTCTGGAGTGTACCTACAAAACTAA 60.239 42.308 0.00 0.00 38.04 2.24
4301 4552 3.428532 GAGGTCTGGAGTGTACCTACAA 58.571 50.000 0.00 0.00 43.69 2.41
4302 4553 2.291411 GGAGGTCTGGAGTGTACCTACA 60.291 54.545 0.00 0.00 43.69 2.74
4303 4554 2.291411 TGGAGGTCTGGAGTGTACCTAC 60.291 54.545 0.00 0.00 43.69 3.18
4304 4555 1.997791 TGGAGGTCTGGAGTGTACCTA 59.002 52.381 0.00 0.00 43.69 3.08
4305 4556 0.784495 TGGAGGTCTGGAGTGTACCT 59.216 55.000 0.00 0.00 46.33 3.08
4306 4557 1.187087 CTGGAGGTCTGGAGTGTACC 58.813 60.000 0.00 0.00 0.00 3.34
4312 4563 1.072965 AGCAAAACTGGAGGTCTGGAG 59.927 52.381 0.00 0.00 0.00 3.86
4332 5003 1.255667 GGCCAGAGGTACACCGAGAA 61.256 60.000 0.00 0.00 42.08 2.87
4337 5008 0.905337 ACTGAGGCCAGAGGTACACC 60.905 60.000 5.01 0.00 43.02 4.16
4351 5022 1.001406 ACGCAGGAGAGGAAAACTGAG 59.999 52.381 0.00 0.00 36.91 3.35
4366 5037 0.317269 CAGCAAGGTGAACAACGCAG 60.317 55.000 0.00 0.00 0.00 5.18
4369 5040 0.029300 CCACAGCAAGGTGAACAACG 59.971 55.000 6.23 0.00 41.32 4.10
4395 5072 2.552155 GGCCATGAAGTACTGGTGTGAA 60.552 50.000 0.00 0.00 34.86 3.18
4407 5084 1.751927 GCTCACTGGGGCCATGAAG 60.752 63.158 4.39 0.00 0.00 3.02
4429 5106 2.969821 TTGTAACAACAGGGGCTCAT 57.030 45.000 0.00 0.00 0.00 2.90
4435 5112 4.758165 ACCTTCGTATTTGTAACAACAGGG 59.242 41.667 0.00 0.00 0.00 4.45
4449 5126 1.153628 GCCGCACTCACCTTCGTAT 60.154 57.895 0.00 0.00 0.00 3.06
4450 5127 2.260434 GCCGCACTCACCTTCGTA 59.740 61.111 0.00 0.00 0.00 3.43
4453 5130 3.112709 GACGCCGCACTCACCTTC 61.113 66.667 0.00 0.00 0.00 3.46
4455 5132 4.057428 GAGACGCCGCACTCACCT 62.057 66.667 6.95 0.00 33.86 4.00
4457 5134 2.355837 TTGAGACGCCGCACTCAC 60.356 61.111 12.72 0.00 41.82 3.51
4458 5135 2.049156 CTTGAGACGCCGCACTCA 60.049 61.111 9.82 9.82 40.66 3.41
4516 7393 0.907704 AACGGAGGGAGTACATGGCA 60.908 55.000 0.00 0.00 0.00 4.92
4517 7394 0.179081 GAACGGAGGGAGTACATGGC 60.179 60.000 0.00 0.00 0.00 4.40
4518 7395 0.102481 CGAACGGAGGGAGTACATGG 59.898 60.000 0.00 0.00 0.00 3.66
4519 7396 0.102481 CCGAACGGAGGGAGTACATG 59.898 60.000 7.53 0.00 37.50 3.21
4520 7397 0.033796 TCCGAACGGAGGGAGTACAT 60.034 55.000 12.04 0.00 39.76 2.29
4521 7398 0.251297 TTCCGAACGGAGGGAGTACA 60.251 55.000 15.34 0.00 46.06 2.90
4522 7399 1.109609 ATTCCGAACGGAGGGAGTAC 58.890 55.000 15.34 0.00 46.06 2.73
4523 7400 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
4524 7401 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
4525 7402 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
4526 7403 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
4527 7404 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
4528 7405 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
4529 7406 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
4530 7407 3.367703 GGAGACAAGTAATTCCGAACGGA 60.368 47.826 12.04 12.04 43.52 4.69
4531 7408 2.928116 GGAGACAAGTAATTCCGAACGG 59.072 50.000 6.94 6.94 0.00 4.44
4537 7414 5.183228 TCCATTTCGGAGACAAGTAATTCC 58.817 41.667 0.00 0.00 39.64 3.01
4551 7428 9.542462 TTTTAGTTCTAGATACATCCATTTCGG 57.458 33.333 0.00 0.00 0.00 4.30
4578 7455 9.734984 TCGTAGAAATGGATGTATCTAGATGTA 57.265 33.333 15.79 4.44 0.00 2.29
4579 7456 8.516234 GTCGTAGAAATGGATGTATCTAGATGT 58.484 37.037 15.79 1.25 39.69 3.06
4580 7457 8.515414 TGTCGTAGAAATGGATGTATCTAGATG 58.485 37.037 15.79 0.00 39.69 2.90
4581 7458 8.637196 TGTCGTAGAAATGGATGTATCTAGAT 57.363 34.615 10.73 10.73 39.69 1.98
4582 7459 8.459911 TTGTCGTAGAAATGGATGTATCTAGA 57.540 34.615 0.00 0.00 39.69 2.43
4583 7460 8.353684 ACTTGTCGTAGAAATGGATGTATCTAG 58.646 37.037 0.00 0.00 39.69 2.43
4584 7461 8.234136 ACTTGTCGTAGAAATGGATGTATCTA 57.766 34.615 0.00 0.00 39.69 1.98
4585 7462 7.113658 ACTTGTCGTAGAAATGGATGTATCT 57.886 36.000 0.00 0.00 39.69 1.98
4586 7463 8.867112 TTACTTGTCGTAGAAATGGATGTATC 57.133 34.615 0.00 0.00 39.69 2.24
4587 7464 9.832445 AATTACTTGTCGTAGAAATGGATGTAT 57.168 29.630 0.00 0.00 39.69 2.29
4588 7465 9.309516 GAATTACTTGTCGTAGAAATGGATGTA 57.690 33.333 0.00 0.00 39.69 2.29
4589 7466 7.280205 GGAATTACTTGTCGTAGAAATGGATGT 59.720 37.037 0.00 0.00 39.69 3.06
4590 7467 7.516785 CGGAATTACTTGTCGTAGAAATGGATG 60.517 40.741 0.00 0.00 39.69 3.51
4591 7468 6.479001 CGGAATTACTTGTCGTAGAAATGGAT 59.521 38.462 0.00 0.00 39.69 3.41
4592 7469 5.808540 CGGAATTACTTGTCGTAGAAATGGA 59.191 40.000 0.00 0.00 39.69 3.41
4593 7470 5.006358 CCGGAATTACTTGTCGTAGAAATGG 59.994 44.000 0.00 0.00 39.69 3.16
4594 7471 5.808540 TCCGGAATTACTTGTCGTAGAAATG 59.191 40.000 0.00 0.00 39.69 2.32
4595 7472 5.809051 GTCCGGAATTACTTGTCGTAGAAAT 59.191 40.000 5.23 0.00 39.69 2.17
4596 7473 5.163513 GTCCGGAATTACTTGTCGTAGAAA 58.836 41.667 5.23 0.00 39.69 2.52
4597 7474 4.672542 CGTCCGGAATTACTTGTCGTAGAA 60.673 45.833 5.23 0.00 39.69 2.10
4598 7475 3.181507 CGTCCGGAATTACTTGTCGTAGA 60.182 47.826 5.23 0.00 0.00 2.59
4599 7476 3.103738 CGTCCGGAATTACTTGTCGTAG 58.896 50.000 5.23 0.00 0.00 3.51
4600 7477 2.159393 CCGTCCGGAATTACTTGTCGTA 60.159 50.000 5.23 0.00 37.50 3.43
4601 7478 1.403249 CCGTCCGGAATTACTTGTCGT 60.403 52.381 5.23 0.00 37.50 4.34
4602 7479 1.135315 TCCGTCCGGAATTACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
4603 7480 2.537401 CTCCGTCCGGAATTACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
4604 7481 1.206371 CCTCCGTCCGGAATTACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
4605 7482 1.472728 CCCTCCGTCCGGAATTACTTG 60.473 57.143 5.23 0.00 44.66 3.16
4606 7483 0.828677 CCCTCCGTCCGGAATTACTT 59.171 55.000 5.23 0.00 44.66 2.24
4607 7484 0.032813 TCCCTCCGTCCGGAATTACT 60.033 55.000 5.23 0.00 44.66 2.24
4608 7485 0.388294 CTCCCTCCGTCCGGAATTAC 59.612 60.000 5.23 0.00 44.66 1.89
4609 7486 0.032813 ACTCCCTCCGTCCGGAATTA 60.033 55.000 5.23 0.00 44.66 1.40
4610 7487 0.032813 TACTCCCTCCGTCCGGAATT 60.033 55.000 5.23 0.00 44.66 2.17
4611 7488 0.467659 CTACTCCCTCCGTCCGGAAT 60.468 60.000 5.23 0.00 44.66 3.01
4612 7489 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
4613 7490 0.982852 TACTACTCCCTCCGTCCGGA 60.983 60.000 0.00 0.00 42.90 5.14
4614 7491 0.534652 CTACTACTCCCTCCGTCCGG 60.535 65.000 0.00 0.00 0.00 5.14
4615 7492 0.534652 CCTACTACTCCCTCCGTCCG 60.535 65.000 0.00 0.00 0.00 4.79
4616 7493 0.842635 TCCTACTACTCCCTCCGTCC 59.157 60.000 0.00 0.00 0.00 4.79
4617 7494 2.725221 TTCCTACTACTCCCTCCGTC 57.275 55.000 0.00 0.00 0.00 4.79
4618 7495 5.078256 CAATATTCCTACTACTCCCTCCGT 58.922 45.833 0.00 0.00 0.00 4.69
4619 7496 5.322754 TCAATATTCCTACTACTCCCTCCG 58.677 45.833 0.00 0.00 0.00 4.63
4620 7497 5.186215 GCTCAATATTCCTACTACTCCCTCC 59.814 48.000 0.00 0.00 0.00 4.30
4621 7498 5.186215 GGCTCAATATTCCTACTACTCCCTC 59.814 48.000 0.00 0.00 0.00 4.30
4622 7499 5.088026 GGCTCAATATTCCTACTACTCCCT 58.912 45.833 0.00 0.00 0.00 4.20
4623 7500 4.223255 GGGCTCAATATTCCTACTACTCCC 59.777 50.000 0.00 0.00 0.00 4.30
4624 7501 5.046950 CAGGGCTCAATATTCCTACTACTCC 60.047 48.000 0.00 0.00 0.00 3.85
4625 7502 5.567823 GCAGGGCTCAATATTCCTACTACTC 60.568 48.000 0.00 0.00 0.00 2.59
4750 7632 9.379770 TGTGAATGGATGGAGATAAGTAAGATA 57.620 33.333 0.00 0.00 0.00 1.98
4751 7633 8.267620 TGTGAATGGATGGAGATAAGTAAGAT 57.732 34.615 0.00 0.00 0.00 2.40
4752 7634 7.675161 TGTGAATGGATGGAGATAAGTAAGA 57.325 36.000 0.00 0.00 0.00 2.10
4753 7635 8.206867 TCTTGTGAATGGATGGAGATAAGTAAG 58.793 37.037 0.00 0.00 0.00 2.34
4754 7636 7.987458 GTCTTGTGAATGGATGGAGATAAGTAA 59.013 37.037 0.00 0.00 0.00 2.24
4755 7637 7.125659 TGTCTTGTGAATGGATGGAGATAAGTA 59.874 37.037 0.00 0.00 0.00 2.24
4756 7638 6.070021 TGTCTTGTGAATGGATGGAGATAAGT 60.070 38.462 0.00 0.00 0.00 2.24
4761 7643 4.202451 TGTTGTCTTGTGAATGGATGGAGA 60.202 41.667 0.00 0.00 0.00 3.71
4829 7713 0.599991 GCGTCCGGTGATGATATGCA 60.600 55.000 0.00 0.00 0.00 3.96
4842 7726 1.913451 TAAACGGCCAAATGCGTCCG 61.913 55.000 2.24 2.44 46.61 4.79
4866 7750 1.824230 TCACCCAGCATATGCCAAAAC 59.176 47.619 23.96 0.00 43.38 2.43
4935 7824 1.449601 CACGAGGCCTACCGCAAAT 60.450 57.895 4.42 0.00 42.76 2.32
4936 7825 2.047655 CACGAGGCCTACCGCAAA 60.048 61.111 4.42 0.00 42.76 3.68
4941 7832 1.265905 CACAAAAACACGAGGCCTACC 59.734 52.381 4.42 0.00 0.00 3.18
4951 7842 3.443037 TGTACATGCAGCACAAAAACAC 58.557 40.909 0.00 0.00 0.00 3.32
5041 7933 6.667007 TGTGTATGTACAGCAGAATTGATG 57.333 37.500 0.33 0.00 45.98 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.