Multiple sequence alignment - TraesCS2B01G467600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G467600 chr2B 100.000 2576 0 0 1 2576 663331441 663334016 0.000000e+00 4758
1 TraesCS2B01G467600 chr2B 95.114 307 15 0 2003 2309 601732869 601732563 3.850000e-133 484
2 TraesCS2B01G467600 chr2B 87.755 147 18 0 1300 1446 663140002 663139856 3.410000e-39 172
3 TraesCS2B01G467600 chr2B 97.015 67 2 0 2359 2425 601732108 601732042 2.090000e-21 113
4 TraesCS2B01G467600 chr2B 79.874 159 16 4 1 143 663788035 663787877 4.530000e-18 102
5 TraesCS2B01G467600 chr2D 93.161 2559 110 32 4 2531 556225888 556223364 0.000000e+00 3696
6 TraesCS2B01G467600 chr2D 83.333 516 23 23 2003 2504 564469795 564469329 3.960000e-113 418
7 TraesCS2B01G467600 chr2A 93.298 1313 44 21 1217 2513 695978403 695977119 0.000000e+00 1897
8 TraesCS2B01G467600 chr2A 89.912 1249 66 21 9 1230 695821765 695820550 0.000000e+00 1554
9 TraesCS2B01G467600 chr2A 94.808 809 27 6 1720 2513 695819947 695819139 0.000000e+00 1247
10 TraesCS2B01G467600 chr2A 96.620 503 15 2 1219 1721 695820529 695820029 0.000000e+00 833
11 TraesCS2B01G467600 chr2A 92.683 246 16 2 986 1230 695978663 695978419 1.130000e-93 353
12 TraesCS2B01G467600 chr2A 79.303 488 63 19 1300 1761 695521750 695521275 8.950000e-80 307
13 TraesCS2B01G467600 chr2A 86.124 209 25 2 3 209 695993391 695993185 3.340000e-54 222
14 TraesCS2B01G467600 chr2A 80.000 215 15 10 1 199 695978866 695978664 1.610000e-27 134
15 TraesCS2B01G467600 chr3D 89.341 516 16 6 2003 2504 482835833 482836323 1.690000e-171 612
16 TraesCS2B01G467600 chr6A 88.372 516 22 5 2003 2504 561589526 561590017 1.030000e-163 586
17 TraesCS2B01G467600 chr6A 88.178 516 23 5 2003 2504 561451112 561450621 4.780000e-162 580
18 TraesCS2B01G467600 chr6A 87.016 516 29 7 2003 2504 561602783 561603274 4.850000e-152 547
19 TraesCS2B01G467600 chr4A 85.660 523 42 15 2003 2504 30777241 30776731 1.060000e-143 520


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G467600 chr2B 663331441 663334016 2575 False 4758.000000 4758 100.000000 1 2576 1 chr2B.!!$F1 2575
1 TraesCS2B01G467600 chr2B 601732042 601732869 827 True 298.500000 484 96.064500 2003 2425 2 chr2B.!!$R3 422
2 TraesCS2B01G467600 chr2D 556223364 556225888 2524 True 3696.000000 3696 93.161000 4 2531 1 chr2D.!!$R1 2527
3 TraesCS2B01G467600 chr2A 695819139 695821765 2626 True 1211.333333 1554 93.780000 9 2513 3 chr2A.!!$R3 2504
4 TraesCS2B01G467600 chr2A 695977119 695978866 1747 True 794.666667 1897 88.660333 1 2513 3 chr2A.!!$R4 2512
5 TraesCS2B01G467600 chr4A 30776731 30777241 510 True 520.000000 520 85.660000 2003 2504 1 chr4A.!!$R1 501

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
577 596 0.24636 ACGGACGCAATCAGACATGA 59.754 50.0 0.0 0.0 40.5 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2200 2355 0.107945 CAGCAGAAGCAGGAGGGTAC 60.108 60.0 0.0 0.0 45.49 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 3.106738 CATCAAGGGGATGCCTCAC 57.893 57.895 2.19 0.00 46.35 3.51
69 70 0.466922 CATCAAGGGGATGCCTCACC 60.467 60.000 1.27 1.27 46.35 4.02
102 119 1.374190 CACTCTGCTTGCCTCTGGT 59.626 57.895 0.00 0.00 0.00 4.00
136 153 2.195727 TGAGACCATGGACCATGCTTA 58.804 47.619 26.56 14.17 40.20 3.09
137 154 2.092968 TGAGACCATGGACCATGCTTAC 60.093 50.000 26.56 17.39 40.20 2.34
138 155 2.171448 GAGACCATGGACCATGCTTACT 59.829 50.000 26.56 20.12 40.20 2.24
139 156 2.092753 AGACCATGGACCATGCTTACTG 60.093 50.000 26.56 15.16 40.20 2.74
140 157 1.635487 ACCATGGACCATGCTTACTGT 59.365 47.619 26.56 15.77 40.20 3.55
141 158 2.843730 ACCATGGACCATGCTTACTGTA 59.156 45.455 26.56 0.00 40.20 2.74
142 159 3.459598 ACCATGGACCATGCTTACTGTAT 59.540 43.478 26.56 2.58 40.20 2.29
144 161 4.454678 CATGGACCATGCTTACTGTATGT 58.545 43.478 21.35 0.00 37.11 2.29
145 162 4.568072 TGGACCATGCTTACTGTATGTT 57.432 40.909 0.00 0.00 37.11 2.71
146 163 4.917385 TGGACCATGCTTACTGTATGTTT 58.083 39.130 0.00 0.00 37.11 2.83
147 164 5.321102 TGGACCATGCTTACTGTATGTTTT 58.679 37.500 0.00 0.00 37.11 2.43
148 165 5.414454 TGGACCATGCTTACTGTATGTTTTC 59.586 40.000 0.00 0.00 37.11 2.29
149 166 5.447279 GGACCATGCTTACTGTATGTTTTCG 60.447 44.000 3.12 0.00 37.11 3.46
150 167 4.394920 ACCATGCTTACTGTATGTTTTCGG 59.605 41.667 3.12 0.00 37.11 4.30
151 168 4.201910 CCATGCTTACTGTATGTTTTCGGG 60.202 45.833 3.12 0.00 37.11 5.14
152 169 4.274602 TGCTTACTGTATGTTTTCGGGA 57.725 40.909 3.12 0.00 0.00 5.14
153 170 4.643463 TGCTTACTGTATGTTTTCGGGAA 58.357 39.130 3.12 0.00 0.00 3.97
154 171 4.453136 TGCTTACTGTATGTTTTCGGGAAC 59.547 41.667 3.12 0.00 0.00 3.62
249 266 5.230942 CCCTCAAACACTATATCGCCTTAG 58.769 45.833 0.00 0.00 0.00 2.18
329 346 7.220599 CGAATCAACCAAATATTTTTCGCAT 57.779 32.000 14.15 0.00 0.00 4.73
442 459 2.338577 CCAGGATTGGCTTAGACAGG 57.661 55.000 0.00 0.00 37.73 4.00
545 562 2.619013 AGCAGCAGTAAACAAATCGC 57.381 45.000 0.00 0.00 0.00 4.58
550 567 4.236935 CAGCAGTAAACAAATCGCCAAAT 58.763 39.130 0.00 0.00 0.00 2.32
577 596 0.246360 ACGGACGCAATCAGACATGA 59.754 50.000 0.00 0.00 40.50 3.07
698 718 4.438744 GGCAGGCCGAAATGCATAATATAC 60.439 45.833 15.79 0.00 44.37 1.47
721 743 2.887152 AGTAAACTTCAGGCCTGCAAAG 59.113 45.455 28.91 26.81 0.00 2.77
797 819 4.563374 GCCAAAACAATGCCAGGATAACTT 60.563 41.667 0.00 0.00 0.00 2.66
808 830 4.082125 CCAGGATAACTTCAGCCAAAAGT 58.918 43.478 0.00 0.00 38.59 2.66
846 868 1.740380 CGTGGCATCTCAACCTTCGAT 60.740 52.381 0.00 0.00 0.00 3.59
895 917 6.874134 GTGTTCACTTGTCATAACTCATACCT 59.126 38.462 0.00 0.00 0.00 3.08
988 1026 2.975489 ACAGACACTTCCCTTCTCACAT 59.025 45.455 0.00 0.00 0.00 3.21
1038 1077 1.179814 AGGTTCACGAGTTCGAGGCT 61.180 55.000 8.72 0.00 43.02 4.58
1077 1116 0.032912 TATGGGGACTCTACGGCACA 60.033 55.000 0.00 0.00 0.00 4.57
1201 1240 0.242286 CGCTCCAGGTGAGATATCCG 59.758 60.000 0.00 0.00 44.42 4.18
1214 1253 2.850568 AGATATCCGGAAACCACCCTTT 59.149 45.455 9.01 0.00 0.00 3.11
1215 1254 2.793288 TATCCGGAAACCACCCTTTC 57.207 50.000 9.01 0.00 0.00 2.62
1251 1321 4.021229 TCCATGTGTATACTGACCGAGTT 58.979 43.478 4.17 0.00 35.96 3.01
1271 1341 2.502213 AACGGTTTACTGCTTTTGCC 57.498 45.000 0.00 0.00 46.87 4.52
1314 1384 7.405292 AGACATACAGGGAGAAATTCATCAAA 58.595 34.615 0.00 0.00 0.00 2.69
1464 1534 7.653713 AGATCGACCATTGTGTATGAGATAAAC 59.346 37.037 0.00 0.00 36.26 2.01
1587 1657 5.474532 TCAGAGCAGTTAATTCTTGCAACAT 59.525 36.000 0.00 0.00 0.00 2.71
1833 1988 9.166126 CGAAGAAATGTACCTTAACTTGTTTTC 57.834 33.333 7.55 0.00 0.00 2.29
1888 2043 8.011673 CACGGATTTGATTATGTATCATCACAC 58.988 37.037 0.00 0.00 42.69 3.82
1890 2045 8.724229 CGGATTTGATTATGTATCATCACACAT 58.276 33.333 0.00 0.00 42.69 3.21
1996 2151 3.054213 TCAGATTGATGGCAAGATGGACA 60.054 43.478 0.00 0.00 37.45 4.02
2023 2178 2.693797 ACTGTGCAAATGAAGAAGCG 57.306 45.000 0.00 0.00 0.00 4.68
2058 2213 8.404265 AGGGGATTATATCATCCAAACAATCAT 58.596 33.333 16.15 0.00 44.36 2.45
2097 2252 3.399330 AGTAGTTCAACACCACATTCGG 58.601 45.455 0.00 0.00 0.00 4.30
2172 2327 0.661020 AACAGAAACCAAACCTCGCG 59.339 50.000 0.00 0.00 0.00 5.87
2200 2355 6.258287 CCTTTGATTCATCTCTGCAGAACTAG 59.742 42.308 18.85 6.09 30.24 2.57
2292 2447 6.600822 ACAATAAGAATCAATCAGGACACTGG 59.399 38.462 0.00 0.00 44.99 4.00
2299 2454 0.826715 ATCAGGACACTGGATCCACG 59.173 55.000 11.44 9.93 44.99 4.94
2387 2971 0.777446 CCTTCCTCAAACCCCCTTCA 59.223 55.000 0.00 0.00 0.00 3.02
2407 3016 5.635278 TCAACATGATCTCCACATACCAT 57.365 39.130 0.00 0.00 0.00 3.55
2425 3034 2.684881 CCATATTCAGTCCTGCAACCAC 59.315 50.000 0.00 0.00 0.00 4.16
2428 3037 1.691195 TTCAGTCCTGCAACCACCGA 61.691 55.000 0.00 0.00 0.00 4.69
2460 3083 0.249280 CAAACCACCGAAAAGGCACC 60.249 55.000 0.00 0.00 46.52 5.01
2531 3154 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
2532 3155 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
2533 3156 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
2534 3157 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
2535 3158 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
2536 3159 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
2537 3160 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
2538 3161 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
2539 3162 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
2540 3163 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
2541 3164 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
2542 3165 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
2543 3166 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
2544 3167 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
2545 3168 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
2546 3169 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
2547 3170 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
2548 3171 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
2549 3172 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
2550 3173 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
2551 3174 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
2552 3175 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
2553 3176 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
2554 3177 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
2555 3178 6.128282 ACAACAACAACAACAACAACAACAAA 60.128 30.769 0.00 0.00 0.00 2.83
2556 3179 6.042144 ACAACAACAACAACAACAACAAAG 57.958 33.333 0.00 0.00 0.00 2.77
2557 3180 4.723879 ACAACAACAACAACAACAAAGC 57.276 36.364 0.00 0.00 0.00 3.51
2558 3181 3.496507 ACAACAACAACAACAACAAAGCC 59.503 39.130 0.00 0.00 0.00 4.35
2559 3182 3.676291 ACAACAACAACAACAAAGCCT 57.324 38.095 0.00 0.00 0.00 4.58
2560 3183 4.001618 ACAACAACAACAACAAAGCCTT 57.998 36.364 0.00 0.00 0.00 4.35
2561 3184 4.384940 ACAACAACAACAACAAAGCCTTT 58.615 34.783 0.00 0.00 0.00 3.11
2562 3185 5.542779 ACAACAACAACAACAAAGCCTTTA 58.457 33.333 0.00 0.00 0.00 1.85
2563 3186 5.637387 ACAACAACAACAACAAAGCCTTTAG 59.363 36.000 0.00 0.00 0.00 1.85
2564 3187 5.400066 ACAACAACAACAAAGCCTTTAGT 57.600 34.783 0.00 0.00 0.00 2.24
2565 3188 5.407502 ACAACAACAACAAAGCCTTTAGTC 58.592 37.500 0.00 0.00 0.00 2.59
2566 3189 4.649088 ACAACAACAAAGCCTTTAGTCC 57.351 40.909 0.00 0.00 0.00 3.85
2567 3190 3.383505 ACAACAACAAAGCCTTTAGTCCC 59.616 43.478 0.00 0.00 0.00 4.46
2568 3191 3.306472 ACAACAAAGCCTTTAGTCCCA 57.694 42.857 0.00 0.00 0.00 4.37
2569 3192 3.637769 ACAACAAAGCCTTTAGTCCCAA 58.362 40.909 0.00 0.00 0.00 4.12
2570 3193 4.027437 ACAACAAAGCCTTTAGTCCCAAA 58.973 39.130 0.00 0.00 0.00 3.28
2571 3194 4.142026 ACAACAAAGCCTTTAGTCCCAAAC 60.142 41.667 0.00 0.00 0.00 2.93
2572 3195 3.637769 ACAAAGCCTTTAGTCCCAAACA 58.362 40.909 0.00 0.00 0.00 2.83
2573 3196 4.027437 ACAAAGCCTTTAGTCCCAAACAA 58.973 39.130 0.00 0.00 0.00 2.83
2574 3197 4.099419 ACAAAGCCTTTAGTCCCAAACAAG 59.901 41.667 0.00 0.00 0.00 3.16
2575 3198 3.595190 AGCCTTTAGTCCCAAACAAGT 57.405 42.857 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 2.597340 CATCCCCTTGATGGCGGT 59.403 61.111 0.00 0.00 45.99 5.68
67 68 2.032681 GCTCCTTTCACCGCTGGT 59.967 61.111 0.00 0.00 35.62 4.00
68 69 2.032528 TGCTCCTTTCACCGCTGG 59.967 61.111 0.00 0.00 0.00 4.85
69 70 1.294659 GAGTGCTCCTTTCACCGCTG 61.295 60.000 0.00 0.00 35.14 5.18
126 143 5.447279 CCGAAAACATACAGTAAGCATGGTC 60.447 44.000 0.00 0.00 0.00 4.02
136 153 4.345859 TCTGTTCCCGAAAACATACAGT 57.654 40.909 0.00 0.00 38.41 3.55
137 154 5.880054 ATTCTGTTCCCGAAAACATACAG 57.120 39.130 3.52 0.00 38.41 2.74
138 155 7.162761 TCTAATTCTGTTCCCGAAAACATACA 58.837 34.615 3.52 0.00 38.41 2.29
139 156 7.333672 ACTCTAATTCTGTTCCCGAAAACATAC 59.666 37.037 3.52 0.00 38.41 2.39
140 157 7.391620 ACTCTAATTCTGTTCCCGAAAACATA 58.608 34.615 3.52 0.00 38.41 2.29
141 158 6.238648 ACTCTAATTCTGTTCCCGAAAACAT 58.761 36.000 3.52 0.00 38.41 2.71
142 159 5.617252 ACTCTAATTCTGTTCCCGAAAACA 58.383 37.500 3.14 3.14 37.56 2.83
144 161 6.403878 CCTACTCTAATTCTGTTCCCGAAAA 58.596 40.000 0.00 0.00 0.00 2.29
145 162 5.626116 GCCTACTCTAATTCTGTTCCCGAAA 60.626 44.000 0.00 0.00 0.00 3.46
146 163 4.142004 GCCTACTCTAATTCTGTTCCCGAA 60.142 45.833 0.00 0.00 0.00 4.30
147 164 3.383825 GCCTACTCTAATTCTGTTCCCGA 59.616 47.826 0.00 0.00 0.00 5.14
148 165 3.132289 TGCCTACTCTAATTCTGTTCCCG 59.868 47.826 0.00 0.00 0.00 5.14
149 166 4.755266 TGCCTACTCTAATTCTGTTCCC 57.245 45.455 0.00 0.00 0.00 3.97
150 167 5.119694 CCTTGCCTACTCTAATTCTGTTCC 58.880 45.833 0.00 0.00 0.00 3.62
151 168 5.104900 TCCCTTGCCTACTCTAATTCTGTTC 60.105 44.000 0.00 0.00 0.00 3.18
152 169 4.783227 TCCCTTGCCTACTCTAATTCTGTT 59.217 41.667 0.00 0.00 0.00 3.16
153 170 4.362677 TCCCTTGCCTACTCTAATTCTGT 58.637 43.478 0.00 0.00 0.00 3.41
154 171 5.359194 TTCCCTTGCCTACTCTAATTCTG 57.641 43.478 0.00 0.00 0.00 3.02
249 266 4.074970 TCTTGAGAGATTTGAACCAAGGC 58.925 43.478 0.00 0.00 33.75 4.35
435 452 3.625764 GCGATTTTGTTATGGCCTGTCTA 59.374 43.478 3.32 0.00 0.00 2.59
436 453 2.423538 GCGATTTTGTTATGGCCTGTCT 59.576 45.455 3.32 0.00 0.00 3.41
437 454 2.163412 TGCGATTTTGTTATGGCCTGTC 59.837 45.455 3.32 0.00 0.00 3.51
438 455 2.166829 TGCGATTTTGTTATGGCCTGT 58.833 42.857 3.32 0.00 0.00 4.00
439 456 2.937469 TGCGATTTTGTTATGGCCTG 57.063 45.000 3.32 0.00 0.00 4.85
440 457 5.348164 GTTTATGCGATTTTGTTATGGCCT 58.652 37.500 3.32 0.00 0.00 5.19
441 458 4.206200 CGTTTATGCGATTTTGTTATGGCC 59.794 41.667 0.00 0.00 0.00 5.36
442 459 4.206200 CCGTTTATGCGATTTTGTTATGGC 59.794 41.667 0.00 0.00 0.00 4.40
443 460 4.206200 GCCGTTTATGCGATTTTGTTATGG 59.794 41.667 0.00 0.00 0.00 2.74
444 461 4.795795 TGCCGTTTATGCGATTTTGTTATG 59.204 37.500 0.00 0.00 0.00 1.90
445 462 4.987832 TGCCGTTTATGCGATTTTGTTAT 58.012 34.783 0.00 0.00 0.00 1.89
446 463 4.407818 CTGCCGTTTATGCGATTTTGTTA 58.592 39.130 0.00 0.00 0.00 2.41
480 497 0.678950 TGCGTCACTGTGATCCTCAA 59.321 50.000 14.37 0.00 0.00 3.02
550 567 0.179111 GATTGCGTCCGTCTCCATCA 60.179 55.000 0.00 0.00 0.00 3.07
577 596 1.342174 CAAGCACTTGGTTCTTGCCAT 59.658 47.619 2.32 0.00 38.48 4.40
597 616 9.103861 CTTATTTTGGAGAACTGATTCCTCTAC 57.896 37.037 0.00 0.00 35.18 2.59
636 656 2.432510 CGATTCTCTTCCTGTAAGCCCT 59.567 50.000 0.00 0.00 34.97 5.19
698 718 3.334583 TGCAGGCCTGAAGTTTACTAG 57.665 47.619 37.21 5.32 0.00 2.57
797 819 3.294493 GGGCGCACTTTTGGCTGA 61.294 61.111 10.83 0.00 0.00 4.26
808 830 4.980805 GTGACAACGAGGGGCGCA 62.981 66.667 10.83 0.00 46.04 6.09
846 868 4.110482 GCTTAAAGTCTTCGCTCGGAATA 58.890 43.478 0.00 0.00 33.26 1.75
988 1026 0.327924 ATCGCCATGGACTTGTGGAA 59.672 50.000 18.40 0.00 37.72 3.53
1065 1104 3.275088 CGGAGTGTGCCGTAGAGT 58.725 61.111 0.00 0.00 46.07 3.24
1201 1240 2.562738 CAGGATTGAAAGGGTGGTTTCC 59.437 50.000 0.00 0.00 35.85 3.13
1214 1253 2.567169 ACATGGACGACTTCAGGATTGA 59.433 45.455 0.00 0.00 0.00 2.57
1215 1254 2.674852 CACATGGACGACTTCAGGATTG 59.325 50.000 0.00 0.00 0.00 2.67
1251 1321 2.950309 TGGCAAAAGCAGTAAACCGTTA 59.050 40.909 0.00 0.00 0.00 3.18
1260 1330 0.613012 GGATCCCTGGCAAAAGCAGT 60.613 55.000 0.00 0.00 0.00 4.40
1314 1384 5.644977 TGATGTAGTTCTCATTGTCGACT 57.355 39.130 17.92 0.00 0.00 4.18
1464 1534 0.463833 GCCCGGGGTGAGTTTCATAG 60.464 60.000 25.28 0.00 0.00 2.23
1587 1657 5.122869 GCATTGATACACTTTTGCTCTGAGA 59.877 40.000 9.28 0.00 0.00 3.27
1996 2151 7.042523 GCTTCTTCATTTGCACAGTACAATTTT 60.043 33.333 0.00 0.00 0.00 1.82
2023 2178 6.239458 GGATGATATAATCCCCTCTCGATTCC 60.239 46.154 7.84 0.00 40.36 3.01
2058 2213 7.232737 TGAACTACTCATCAACCTAGAACTTCA 59.767 37.037 0.00 0.00 0.00 3.02
2097 2252 8.522830 TGTTATTTTCATTTGGTCAGATCTTCC 58.477 33.333 0.00 0.00 0.00 3.46
2172 2327 3.276857 TGCAGAGATGAATCAAAGGCTC 58.723 45.455 0.00 0.00 0.00 4.70
2200 2355 0.107945 CAGCAGAAGCAGGAGGGTAC 60.108 60.000 0.00 0.00 45.49 3.34
2292 2447 7.962964 TTCATCATTTAATAGGACGTGGATC 57.037 36.000 0.00 0.00 0.00 3.36
2387 2971 7.748677 TGAATATGGTATGTGGAGATCATGTT 58.251 34.615 0.00 0.00 0.00 2.71
2407 3016 1.338674 CGGTGGTTGCAGGACTGAATA 60.339 52.381 3.00 0.00 0.00 1.75
2425 3034 4.381566 GTGGTTTGTTCGATTCATTTTCGG 59.618 41.667 0.00 0.00 37.22 4.30
2428 3037 4.036971 TCGGTGGTTTGTTCGATTCATTTT 59.963 37.500 0.00 0.00 0.00 1.82
2460 3083 2.414824 GCTCTGTAACTGAGTCAGGTCG 60.415 54.545 23.79 9.96 35.51 4.79
2531 3154 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
2532 3155 6.422776 TTTGTTGTTGTTGTTGTTGTTGTT 57.577 29.167 0.00 0.00 0.00 2.83
2533 3156 5.503194 GCTTTGTTGTTGTTGTTGTTGTTGT 60.503 36.000 0.00 0.00 0.00 3.32
2534 3157 4.903016 GCTTTGTTGTTGTTGTTGTTGTTG 59.097 37.500 0.00 0.00 0.00 3.33
2535 3158 4.024472 GGCTTTGTTGTTGTTGTTGTTGTT 60.024 37.500 0.00 0.00 0.00 2.83
2536 3159 3.496507 GGCTTTGTTGTTGTTGTTGTTGT 59.503 39.130 0.00 0.00 0.00 3.32
2537 3160 3.745458 AGGCTTTGTTGTTGTTGTTGTTG 59.255 39.130 0.00 0.00 0.00 3.33
2538 3161 4.001618 AGGCTTTGTTGTTGTTGTTGTT 57.998 36.364 0.00 0.00 0.00 2.83
2539 3162 3.676291 AGGCTTTGTTGTTGTTGTTGT 57.324 38.095 0.00 0.00 0.00 3.32
2540 3163 5.637387 ACTAAAGGCTTTGTTGTTGTTGTTG 59.363 36.000 22.32 0.00 0.00 3.33
2541 3164 5.789521 ACTAAAGGCTTTGTTGTTGTTGTT 58.210 33.333 22.32 0.00 0.00 2.83
2542 3165 5.400066 ACTAAAGGCTTTGTTGTTGTTGT 57.600 34.783 22.32 0.00 0.00 3.32
2543 3166 4.803613 GGACTAAAGGCTTTGTTGTTGTTG 59.196 41.667 22.32 0.00 0.00 3.33
2544 3167 4.142026 GGGACTAAAGGCTTTGTTGTTGTT 60.142 41.667 22.32 0.00 0.00 2.83
2545 3168 3.383505 GGGACTAAAGGCTTTGTTGTTGT 59.616 43.478 22.32 10.58 0.00 3.32
2546 3169 3.383185 TGGGACTAAAGGCTTTGTTGTTG 59.617 43.478 22.32 7.79 0.00 3.33
2547 3170 3.637769 TGGGACTAAAGGCTTTGTTGTT 58.362 40.909 22.32 1.84 0.00 2.83
2548 3171 3.306472 TGGGACTAAAGGCTTTGTTGT 57.694 42.857 22.32 16.69 0.00 3.32
2549 3172 4.142049 TGTTTGGGACTAAAGGCTTTGTTG 60.142 41.667 22.32 13.85 0.00 3.33
2550 3173 4.027437 TGTTTGGGACTAAAGGCTTTGTT 58.973 39.130 22.32 8.73 0.00 2.83
2551 3174 3.637769 TGTTTGGGACTAAAGGCTTTGT 58.362 40.909 22.32 16.86 0.00 2.83
2552 3175 4.099419 ACTTGTTTGGGACTAAAGGCTTTG 59.901 41.667 22.32 13.97 0.00 2.77
2553 3176 4.286707 ACTTGTTTGGGACTAAAGGCTTT 58.713 39.130 17.76 17.76 0.00 3.51
2554 3177 3.910989 ACTTGTTTGGGACTAAAGGCTT 58.089 40.909 0.00 0.00 0.00 4.35
2555 3178 3.595190 ACTTGTTTGGGACTAAAGGCT 57.405 42.857 0.00 0.00 0.00 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.