Multiple sequence alignment - TraesCS2B01G466800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G466800 chr2B 100.000 2958 0 0 1 2958 662585616 662588573 0.000000e+00 5463.0
1 TraesCS2B01G466800 chr2B 100.000 1468 0 0 3204 4671 662588819 662590286 0.000000e+00 2712.0
2 TraesCS2B01G466800 chr2B 83.838 792 95 11 938 1729 662577051 662577809 0.000000e+00 723.0
3 TraesCS2B01G466800 chr2B 79.524 757 128 18 991 1727 662376729 662377478 8.960000e-142 514.0
4 TraesCS2B01G466800 chr2B 78.571 560 113 6 1161 1718 662651526 662652080 3.440000e-96 363.0
5 TraesCS2B01G466800 chr2B 98.000 50 1 0 2 51 661179049 661179098 2.320000e-13 87.9
6 TraesCS2B01G466800 chr2B 96.000 50 2 0 2 51 9227929 9227880 1.080000e-11 82.4
7 TraesCS2B01G466800 chr2A 92.467 2947 153 29 64 2958 695275923 695278852 0.000000e+00 4148.0
8 TraesCS2B01G466800 chr2A 96.912 421 11 1 3204 3622 695278897 695279317 0.000000e+00 704.0
9 TraesCS2B01G466800 chr2A 79.922 767 130 19 990 1741 695161523 695162280 4.110000e-150 542.0
10 TraesCS2B01G466800 chr2A 84.286 560 82 3 1192 1751 695186573 695187126 4.110000e-150 542.0
11 TraesCS2B01G466800 chr2A 79.022 777 133 21 991 1747 695153883 695154649 5.390000e-139 505.0
12 TraesCS2B01G466800 chr2A 85.258 407 58 2 2147 2552 695162539 695162944 7.230000e-113 418.0
13 TraesCS2B01G466800 chr2A 84.337 249 23 8 3760 4005 695285930 695286165 3.640000e-56 230.0
14 TraesCS2B01G466800 chr2A 94.928 138 6 1 3983 4119 587602148 587602011 1.020000e-51 215.0
15 TraesCS2B01G466800 chr2A 94.309 123 7 0 3618 3740 695284230 695284352 6.170000e-44 189.0
16 TraesCS2B01G466800 chr2D 90.897 2340 132 39 666 2954 555852470 555854779 0.000000e+00 3066.0
17 TraesCS2B01G466800 chr2D 94.770 784 39 2 3204 3986 555855126 555855908 0.000000e+00 1219.0
18 TraesCS2B01G466800 chr2D 89.864 513 40 8 172 682 555851945 555852447 0.000000e+00 649.0
19 TraesCS2B01G466800 chr2D 86.225 559 59 11 4127 4671 555856006 555856560 1.450000e-164 590.0
20 TraesCS2B01G466800 chr2D 85.049 408 55 5 2147 2552 555729739 555730142 1.210000e-110 411.0
21 TraesCS2B01G466800 chr2D 75.995 754 151 21 988 1728 555869421 555870157 3.440000e-96 363.0
22 TraesCS2B01G466800 chr2D 78.596 285 43 11 991 1259 555614196 555614478 6.210000e-39 172.0
23 TraesCS2B01G466800 chr2D 94.118 51 3 0 1 51 591303901 591303951 1.390000e-10 78.7
24 TraesCS2B01G466800 chr2D 100.000 30 0 0 64 93 555851662 555851691 6.530000e-04 56.5
25 TraesCS2B01G466800 chr5A 95.588 136 5 1 3985 4119 427200819 427200954 2.830000e-52 217.0
26 TraesCS2B01G466800 chr1A 94.928 138 6 1 3983 4119 540199461 540199598 1.020000e-51 215.0
27 TraesCS2B01G466800 chr4D 94.891 137 5 1 3985 4119 346123206 346123342 3.660000e-51 213.0
28 TraesCS2B01G466800 chr4D 93.007 143 9 1 3980 4121 133714036 133713894 1.700000e-49 207.0
29 TraesCS2B01G466800 chr3A 94.891 137 6 1 3984 4119 13023384 13023248 3.660000e-51 213.0
30 TraesCS2B01G466800 chrUn 92.958 142 10 0 3980 4121 100001326 100001185 1.700000e-49 207.0
31 TraesCS2B01G466800 chrUn 94.118 51 3 0 1 51 37949023 37948973 1.390000e-10 78.7
32 TraesCS2B01G466800 chrUn 94.118 51 3 0 1 51 465550467 465550417 1.390000e-10 78.7
33 TraesCS2B01G466800 chr7A 93.007 143 8 2 3979 4119 191069469 191069327 1.700000e-49 207.0
34 TraesCS2B01G466800 chr7A 86.486 74 9 1 1 73 679379953 679380026 3.870000e-11 80.5
35 TraesCS2B01G466800 chr3D 92.000 150 9 3 3975 4121 570915587 570915736 1.700000e-49 207.0
36 TraesCS2B01G466800 chr3D 97.959 49 1 0 1 49 362195991 362195943 8.330000e-13 86.1
37 TraesCS2B01G466800 chr1B 95.918 49 2 0 1 49 645360994 645361042 3.870000e-11 80.5
38 TraesCS2B01G466800 chr1D 95.833 48 2 0 1 48 95791892 95791939 1.390000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G466800 chr2B 662585616 662590286 4670 False 4087.5 5463 100.0000 1 4671 2 chr2B.!!$F5 4670
1 TraesCS2B01G466800 chr2B 662577051 662577809 758 False 723.0 723 83.8380 938 1729 1 chr2B.!!$F3 791
2 TraesCS2B01G466800 chr2B 662376729 662377478 749 False 514.0 514 79.5240 991 1727 1 chr2B.!!$F2 736
3 TraesCS2B01G466800 chr2B 662651526 662652080 554 False 363.0 363 78.5710 1161 1718 1 chr2B.!!$F4 557
4 TraesCS2B01G466800 chr2A 695275923 695279317 3394 False 2426.0 4148 94.6895 64 3622 2 chr2A.!!$F4 3558
5 TraesCS2B01G466800 chr2A 695186573 695187126 553 False 542.0 542 84.2860 1192 1751 1 chr2A.!!$F2 559
6 TraesCS2B01G466800 chr2A 695153883 695154649 766 False 505.0 505 79.0220 991 1747 1 chr2A.!!$F1 756
7 TraesCS2B01G466800 chr2A 695161523 695162944 1421 False 480.0 542 82.5900 990 2552 2 chr2A.!!$F3 1562
8 TraesCS2B01G466800 chr2A 695284230 695286165 1935 False 209.5 230 89.3230 3618 4005 2 chr2A.!!$F5 387
9 TraesCS2B01G466800 chr2D 555851662 555856560 4898 False 1116.1 3066 92.3512 64 4671 5 chr2D.!!$F5 4607
10 TraesCS2B01G466800 chr2D 555869421 555870157 736 False 363.0 363 75.9950 988 1728 1 chr2D.!!$F3 740

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
610 796 1.228925 TTAAGGTTTTGGGCGGGGG 60.229 57.895 0.0 0.0 0.0 5.4 F
2347 2752 0.250252 GCTGGGATAGGCTTGCTCTC 60.250 60.000 0.0 0.0 0.0 3.2 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2566 2971 0.036388 TCATTTGGTCTCACCGAGGC 60.036 55.0 0.0 0.0 42.58 4.70 R
4249 6357 0.039618 AAACCCCGCAACATCATCCT 59.960 50.0 0.0 0.0 0.00 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.147143 CTAGAGCTAGTACAAAGTTGAGACA 57.853 40.000 0.00 0.00 0.00 3.41
25 26 6.597832 AGAGCTAGTACAAAGTTGAGACAT 57.402 37.500 0.00 0.00 0.00 3.06
26 27 6.998802 AGAGCTAGTACAAAGTTGAGACATT 58.001 36.000 0.00 0.00 0.00 2.71
27 28 7.445945 AGAGCTAGTACAAAGTTGAGACATTT 58.554 34.615 0.00 0.00 0.00 2.32
28 29 8.585881 AGAGCTAGTACAAAGTTGAGACATTTA 58.414 33.333 0.00 0.00 0.00 1.40
29 30 9.372369 GAGCTAGTACAAAGTTGAGACATTTAT 57.628 33.333 0.00 0.00 0.00 1.40
30 31 9.726438 AGCTAGTACAAAGTTGAGACATTTATT 57.274 29.630 0.00 0.00 0.00 1.40
34 35 9.965824 AGTACAAAGTTGAGACATTTATTTTGG 57.034 29.630 0.00 0.00 0.00 3.28
35 36 9.191995 GTACAAAGTTGAGACATTTATTTTGGG 57.808 33.333 0.00 0.00 0.00 4.12
36 37 8.017418 ACAAAGTTGAGACATTTATTTTGGGA 57.983 30.769 0.00 0.00 0.00 4.37
37 38 7.926018 ACAAAGTTGAGACATTTATTTTGGGAC 59.074 33.333 0.00 0.00 0.00 4.46
38 39 7.595819 AAGTTGAGACATTTATTTTGGGACA 57.404 32.000 0.00 0.00 0.00 4.02
39 40 7.219484 AGTTGAGACATTTATTTTGGGACAG 57.781 36.000 0.00 0.00 42.39 3.51
40 41 7.004086 AGTTGAGACATTTATTTTGGGACAGA 58.996 34.615 0.00 0.00 42.39 3.41
41 42 7.505585 AGTTGAGACATTTATTTTGGGACAGAA 59.494 33.333 0.00 0.00 42.39 3.02
42 43 7.452880 TGAGACATTTATTTTGGGACAGAAG 57.547 36.000 0.00 0.00 42.39 2.85
43 44 6.434028 TGAGACATTTATTTTGGGACAGAAGG 59.566 38.462 0.00 0.00 42.39 3.46
44 45 6.552008 AGACATTTATTTTGGGACAGAAGGA 58.448 36.000 0.00 0.00 42.39 3.36
45 46 6.660949 AGACATTTATTTTGGGACAGAAGGAG 59.339 38.462 0.00 0.00 42.39 3.69
46 47 6.314917 ACATTTATTTTGGGACAGAAGGAGT 58.685 36.000 0.00 0.00 42.39 3.85
47 48 7.466804 ACATTTATTTTGGGACAGAAGGAGTA 58.533 34.615 0.00 0.00 42.39 2.59
48 49 8.116026 ACATTTATTTTGGGACAGAAGGAGTAT 58.884 33.333 0.00 0.00 42.39 2.12
49 50 8.971073 CATTTATTTTGGGACAGAAGGAGTATT 58.029 33.333 0.00 0.00 42.39 1.89
51 52 9.457436 TTTATTTTGGGACAGAAGGAGTATTAC 57.543 33.333 0.00 0.00 42.39 1.89
52 53 5.431179 TTTGGGACAGAAGGAGTATTACC 57.569 43.478 0.00 0.00 42.39 2.85
53 54 4.348020 TGGGACAGAAGGAGTATTACCT 57.652 45.455 0.00 0.00 39.69 3.08
54 55 5.476950 TGGGACAGAAGGAGTATTACCTA 57.523 43.478 0.00 0.00 36.67 3.08
55 56 6.039415 TGGGACAGAAGGAGTATTACCTAT 57.961 41.667 0.00 0.00 36.67 2.57
56 57 6.449956 TGGGACAGAAGGAGTATTACCTATT 58.550 40.000 0.00 0.00 36.67 1.73
57 58 6.553852 TGGGACAGAAGGAGTATTACCTATTC 59.446 42.308 0.00 0.00 36.67 1.75
58 59 6.553852 GGGACAGAAGGAGTATTACCTATTCA 59.446 42.308 0.00 0.00 36.67 2.57
59 60 7.070821 GGGACAGAAGGAGTATTACCTATTCAA 59.929 40.741 0.00 0.00 36.67 2.69
60 61 8.483758 GGACAGAAGGAGTATTACCTATTCAAA 58.516 37.037 0.00 0.00 36.67 2.69
61 62 9.535878 GACAGAAGGAGTATTACCTATTCAAAG 57.464 37.037 0.00 0.00 36.67 2.77
62 63 9.047947 ACAGAAGGAGTATTACCTATTCAAAGT 57.952 33.333 0.00 0.00 36.67 2.66
160 163 2.816360 CGACTACGATCCCGACGCA 61.816 63.158 0.00 0.00 42.66 5.24
176 352 1.291877 CGCAAAGACCAACTCCGAGG 61.292 60.000 0.00 0.00 0.00 4.63
231 407 2.801624 CGACATCGCGATTGCTGCA 61.802 57.895 21.14 0.00 39.65 4.41
244 420 2.639286 CTGCAACCAAGCCACGAC 59.361 61.111 0.00 0.00 0.00 4.34
283 467 3.471806 GGGGGCTCTTCCTCGTCC 61.472 72.222 0.00 0.00 35.59 4.79
400 584 3.532155 GCGGAGTCGAGGCTGGAT 61.532 66.667 1.57 0.00 39.00 3.41
441 625 2.716017 CGGCAGGACTCACCCTCTC 61.716 68.421 0.00 0.00 40.05 3.20
488 672 1.893137 AGATACGTGACAACCTGCAGA 59.107 47.619 17.39 0.00 0.00 4.26
508 692 2.103042 GCAGGACGATGAGGTGCAC 61.103 63.158 8.80 8.80 34.18 4.57
513 697 2.159043 AGGACGATGAGGTGCACTATTG 60.159 50.000 17.98 14.30 0.00 1.90
588 774 5.482163 TTGATCTATGGTGTGAACTGTGA 57.518 39.130 0.00 0.00 0.00 3.58
610 796 1.228925 TTAAGGTTTTGGGCGGGGG 60.229 57.895 0.00 0.00 0.00 5.40
621 807 2.281276 GCGGGGGTTCGACTTTGT 60.281 61.111 0.00 0.00 0.00 2.83
630 816 3.003378 GGGTTCGACTTTGTTTCTTCTGG 59.997 47.826 0.00 0.00 0.00 3.86
634 820 6.459710 GGTTCGACTTTGTTTCTTCTGGAAAT 60.460 38.462 0.00 0.00 44.46 2.17
657 844 9.822185 AAATAGGGAAGCATTGTGATTAATTTC 57.178 29.630 0.00 0.00 0.00 2.17
659 846 7.105241 AGGGAAGCATTGTGATTAATTTCTC 57.895 36.000 0.00 0.00 0.00 2.87
676 903 4.527509 TTCTCTAGCTTGAACAGACTGG 57.472 45.455 7.51 0.00 0.00 4.00
734 961 7.529880 TTAATTTTCCGCACTAGCTACTAAC 57.470 36.000 0.00 0.00 39.10 2.34
880 1117 1.918293 ATGCAGTTCCCCGGACTCA 60.918 57.895 0.73 0.00 0.00 3.41
927 1164 5.166398 GCTGCTTATTTCAAGCTTTGATGT 58.834 37.500 10.09 0.00 43.38 3.06
1095 1332 7.867403 CAGGTTTCTTATGCTGTATTGTTGTTT 59.133 33.333 0.00 0.00 0.00 2.83
1122 1386 8.854117 ACTAATATCCAATTTCATTGCTTCCTC 58.146 33.333 0.00 0.00 38.92 3.71
1207 1479 0.622136 TCTGCCTGATGGTGCTGAAT 59.378 50.000 0.00 0.00 33.32 2.57
1335 1619 2.457366 ACTTTGAGTACTTGCCTCCG 57.543 50.000 0.00 0.00 0.00 4.63
1341 1625 0.763035 AGTACTTGCCTCCGTTGGTT 59.237 50.000 0.00 0.00 0.00 3.67
1353 1637 2.034053 TCCGTTGGTTTTGACATGCTTC 59.966 45.455 0.00 0.00 0.00 3.86
1388 1672 3.483954 CTAGCAAGGACCCACCATG 57.516 57.895 0.00 0.00 42.04 3.66
1566 1850 5.424895 TGGCAAAATAATGTTAGGCCAAGAT 59.575 36.000 5.01 0.00 46.01 2.40
1567 1851 5.754890 GGCAAAATAATGTTAGGCCAAGATG 59.245 40.000 5.01 0.00 39.66 2.90
1568 1852 6.406849 GGCAAAATAATGTTAGGCCAAGATGA 60.407 38.462 5.01 0.00 39.66 2.92
1576 1860 1.379044 GGCCAAGATGACACCCCAG 60.379 63.158 0.00 0.00 0.00 4.45
1623 1913 3.909995 TCTCAAGAAGGGTCTCATTGGAA 59.090 43.478 0.00 0.00 30.70 3.53
1629 1919 3.922171 AGGGTCTCATTGGAATCTGTC 57.078 47.619 0.00 0.00 0.00 3.51
1721 2011 2.216898 GATATGCCTCAACCAGAGCAC 58.783 52.381 0.00 0.00 43.31 4.40
1867 2254 3.000727 GTGCTAGCTAATTCCACGTTGT 58.999 45.455 17.23 0.00 0.00 3.32
1874 2261 3.864003 GCTAATTCCACGTTGTAGTCTCC 59.136 47.826 0.00 0.00 0.00 3.71
1878 2265 1.616865 TCCACGTTGTAGTCTCCTTGG 59.383 52.381 0.00 0.00 0.00 3.61
1887 2274 4.938028 TGTAGTCTCCTTGGTATGTGGTA 58.062 43.478 0.00 0.00 0.00 3.25
1903 2290 7.387948 GGTATGTGGTAACTAATGCCTATGAAG 59.612 40.741 0.00 0.00 33.96 3.02
1911 2298 1.299541 ATGCCTATGAAGTTTCCGCG 58.700 50.000 0.00 0.00 0.00 6.46
1971 2362 6.073447 TGCTTCATACTATCTTTTCCCCAA 57.927 37.500 0.00 0.00 0.00 4.12
1978 2369 7.834181 TCATACTATCTTTTCCCCAAAAGGAAG 59.166 37.037 7.23 7.42 46.44 3.46
1980 2372 6.620429 ACTATCTTTTCCCCAAAAGGAAGAA 58.380 36.000 7.23 0.00 46.44 2.52
1981 2373 5.808366 ATCTTTTCCCCAAAAGGAAGAAC 57.192 39.130 7.23 0.00 46.44 3.01
2010 2406 3.323243 CCGTGACTCTTTTGGTACGAAT 58.677 45.455 0.00 0.00 33.78 3.34
2013 2409 4.031426 CGTGACTCTTTTGGTACGAATAGC 59.969 45.833 3.70 0.00 33.78 2.97
2015 2411 4.927425 TGACTCTTTTGGTACGAATAGCAC 59.073 41.667 3.70 0.13 38.51 4.40
2261 2666 0.744414 CCAGTTGGTATGCCCTGACG 60.744 60.000 7.52 0.00 0.00 4.35
2301 2706 5.278907 CCATTCCACAACATGTCTTAAAGCA 60.279 40.000 0.00 0.00 0.00 3.91
2347 2752 0.250252 GCTGGGATAGGCTTGCTCTC 60.250 60.000 0.00 0.00 0.00 3.20
2558 2963 8.472413 AGGTAAACGTGCAACTAATATCTCTTA 58.528 33.333 0.00 0.00 31.75 2.10
2559 2964 9.257651 GGTAAACGTGCAACTAATATCTCTTAT 57.742 33.333 0.00 0.00 31.75 1.73
2561 2966 6.771188 ACGTGCAACTAATATCTCTTATGC 57.229 37.500 0.00 0.00 31.75 3.14
2565 2970 8.006590 CGTGCAACTAATATCTCTTATGCTTTC 58.993 37.037 0.00 0.00 33.87 2.62
2566 2971 8.006590 GTGCAACTAATATCTCTTATGCTTTCG 58.993 37.037 0.00 0.00 33.87 3.46
2567 2972 7.012358 GCAACTAATATCTCTTATGCTTTCGC 58.988 38.462 0.00 0.00 0.00 4.70
2568 2973 7.513968 CAACTAATATCTCTTATGCTTTCGCC 58.486 38.462 0.00 0.00 34.43 5.54
2569 2974 6.998802 ACTAATATCTCTTATGCTTTCGCCT 58.001 36.000 0.00 0.00 34.43 5.52
2570 2975 7.093992 ACTAATATCTCTTATGCTTTCGCCTC 58.906 38.462 0.00 0.00 34.43 4.70
2571 2976 2.209838 TCTCTTATGCTTTCGCCTCG 57.790 50.000 0.00 0.00 34.43 4.63
2572 2977 1.202417 TCTCTTATGCTTTCGCCTCGG 60.202 52.381 0.00 0.00 34.43 4.63
2573 2978 0.535335 TCTTATGCTTTCGCCTCGGT 59.465 50.000 0.00 0.00 34.43 4.69
2574 2979 0.652592 CTTATGCTTTCGCCTCGGTG 59.347 55.000 0.00 0.00 34.43 4.94
2583 2994 1.079127 CGCCTCGGTGAGACCAAAT 60.079 57.895 0.00 0.00 38.47 2.32
2584 2995 1.361668 CGCCTCGGTGAGACCAAATG 61.362 60.000 0.00 0.00 38.47 2.32
2629 3041 5.107065 GGACGGTTTGTAAGAAACTGATCTG 60.107 44.000 13.59 0.00 39.25 2.90
2630 3042 5.365619 ACGGTTTGTAAGAAACTGATCTGT 58.634 37.500 13.59 0.00 39.25 3.41
2631 3043 6.518493 ACGGTTTGTAAGAAACTGATCTGTA 58.482 36.000 13.59 0.00 39.25 2.74
2649 3061 7.541783 TGATCTGTAAGTTTTGTGCATTATTGC 59.458 33.333 2.60 2.60 41.96 3.56
2680 3116 5.957798 AGACCATGATGCAATGTAAACTTG 58.042 37.500 0.00 0.00 0.00 3.16
2724 3168 7.568349 TGAGTATCTACCATTTTCTTCTGCAT 58.432 34.615 0.00 0.00 34.92 3.96
3317 3858 8.664669 ACCAAATACAAATAGGAAACCAGATT 57.335 30.769 0.00 0.00 0.00 2.40
3418 3959 7.768582 ACCATTTGAATCTACATACATCAACGA 59.231 33.333 0.00 0.00 30.34 3.85
3429 3970 5.006649 ACATACATCAACGAATGAATGGACG 59.993 40.000 0.00 0.00 42.54 4.79
3459 4000 2.279517 ATCTCACCGGAATCGCGC 60.280 61.111 9.46 0.00 34.56 6.86
3482 4023 3.885901 TGTGTGACGAATCCAATTTTCCA 59.114 39.130 0.00 0.00 0.00 3.53
3551 4094 4.999950 GCATCCAGGATGACGAGAAATATT 59.000 41.667 30.90 0.00 42.09 1.28
3649 4192 1.605710 CATTGGGGATCGATTGAGTGC 59.394 52.381 0.00 0.00 0.00 4.40
3704 4247 5.995282 TGTATTCTCACCGTCACATTTCTTT 59.005 36.000 0.00 0.00 0.00 2.52
3712 4255 5.229887 CACCGTCACATTTCTTTCAACTTTG 59.770 40.000 0.00 0.00 0.00 2.77
3732 4275 1.659098 GGGTCGAGTTTGCGATTACTG 59.341 52.381 0.00 0.00 42.82 2.74
3756 4299 3.149196 CCAAAGCTATGGTGAACTGTGT 58.851 45.455 0.00 0.00 35.65 3.72
3789 5889 7.845037 TCATAAAAATGTGTGCAATATGGGAA 58.155 30.769 0.00 0.00 0.00 3.97
3793 5893 7.437793 AAAATGTGTGCAATATGGGAAAAAG 57.562 32.000 0.00 0.00 0.00 2.27
3801 5901 4.222810 GCAATATGGGAAAAAGGGTCAGTT 59.777 41.667 0.00 0.00 0.00 3.16
3866 5967 6.901887 CGAAATTATCACAATCCTTCTGAACG 59.098 38.462 0.00 0.00 0.00 3.95
3874 5975 4.058124 CAATCCTTCTGAACGTGAGACAA 58.942 43.478 0.00 0.00 0.00 3.18
3881 5982 4.631131 TCTGAACGTGAGACAATTCACAT 58.369 39.130 6.91 0.00 46.11 3.21
3939 6040 0.741221 CGCAAGAGGTGGAGCTAACC 60.741 60.000 9.62 9.62 43.02 2.85
3992 6093 6.481954 ACGAACAATGATTTGTACTCCTTC 57.518 37.500 0.00 0.00 45.30 3.46
3994 6095 5.643777 CGAACAATGATTTGTACTCCTTCCT 59.356 40.000 0.00 0.00 45.30 3.36
3999 6100 5.779241 TGATTTGTACTCCTTCCTTCCAT 57.221 39.130 0.00 0.00 0.00 3.41
4010 6111 7.912719 ACTCCTTCCTTCCATTTATATAGAGC 58.087 38.462 0.00 0.00 0.00 4.09
4011 6112 7.037945 ACTCCTTCCTTCCATTTATATAGAGCC 60.038 40.741 0.00 0.00 0.00 4.70
4012 6113 7.025620 TCCTTCCTTCCATTTATATAGAGCCT 58.974 38.462 0.00 0.00 0.00 4.58
4013 6114 8.184249 TCCTTCCTTCCATTTATATAGAGCCTA 58.816 37.037 0.00 0.00 0.00 3.93
4014 6115 8.826765 CCTTCCTTCCATTTATATAGAGCCTAA 58.173 37.037 0.00 0.00 0.00 2.69
4017 6118 8.267894 TCCTTCCATTTATATAGAGCCTAATGC 58.732 37.037 0.00 0.00 41.71 3.56
4028 6129 1.629013 GCCTAATGCGTTTTTGAGGC 58.371 50.000 13.13 13.13 42.45 4.70
4032 6133 4.412207 CCTAATGCGTTTTTGAGGCTAAC 58.588 43.478 0.00 0.00 39.81 2.34
4033 6134 4.156008 CCTAATGCGTTTTTGAGGCTAACT 59.844 41.667 0.00 0.00 39.81 2.24
4034 6135 4.584327 AATGCGTTTTTGAGGCTAACTT 57.416 36.364 0.00 0.00 39.81 2.66
4035 6136 4.584327 ATGCGTTTTTGAGGCTAACTTT 57.416 36.364 0.00 0.00 39.81 2.66
4036 6137 3.701241 TGCGTTTTTGAGGCTAACTTTG 58.299 40.909 0.00 0.00 39.81 2.77
4037 6138 3.378742 TGCGTTTTTGAGGCTAACTTTGA 59.621 39.130 0.00 0.00 39.81 2.69
4038 6139 3.729217 GCGTTTTTGAGGCTAACTTTGAC 59.271 43.478 0.00 0.00 36.26 3.18
4039 6140 4.287720 CGTTTTTGAGGCTAACTTTGACC 58.712 43.478 0.00 0.00 0.00 4.02
4040 6141 4.201970 CGTTTTTGAGGCTAACTTTGACCA 60.202 41.667 0.00 0.00 0.00 4.02
4042 6143 5.923733 TTTTGAGGCTAACTTTGACCAAA 57.076 34.783 0.00 0.00 0.00 3.28
4043 6144 6.478512 TTTTGAGGCTAACTTTGACCAAAT 57.521 33.333 0.00 0.00 0.00 2.32
4044 6145 5.452078 TTGAGGCTAACTTTGACCAAATG 57.548 39.130 0.00 0.00 0.00 2.32
4045 6146 4.469657 TGAGGCTAACTTTGACCAAATGT 58.530 39.130 0.00 0.00 0.00 2.71
4046 6147 4.892934 TGAGGCTAACTTTGACCAAATGTT 59.107 37.500 0.00 11.80 0.00 2.71
4047 6148 6.065374 TGAGGCTAACTTTGACCAAATGTTA 58.935 36.000 0.00 12.42 0.00 2.41
4048 6149 6.206634 TGAGGCTAACTTTGACCAAATGTTAG 59.793 38.462 22.72 22.72 40.29 2.34
4049 6150 6.303839 AGGCTAACTTTGACCAAATGTTAGA 58.696 36.000 26.48 10.83 40.08 2.10
4053 6154 6.463995 AACTTTGACCAAATGTTAGAGCAA 57.536 33.333 0.00 0.00 0.00 3.91
4054 6155 6.655078 ACTTTGACCAAATGTTAGAGCAAT 57.345 33.333 0.00 0.00 0.00 3.56
4055 6156 7.759489 ACTTTGACCAAATGTTAGAGCAATA 57.241 32.000 0.00 0.00 0.00 1.90
4056 6157 8.177119 ACTTTGACCAAATGTTAGAGCAATAA 57.823 30.769 0.00 0.00 0.00 1.40
4057 6158 8.806146 ACTTTGACCAAATGTTAGAGCAATAAT 58.194 29.630 0.00 0.00 0.00 1.28
4069 6170 9.723601 TGTTAGAGCAATAATATATGACATGCA 57.276 29.630 10.78 0.00 34.89 3.96
4072 6173 8.859236 AGAGCAATAATATATGACATGCAACT 57.141 30.769 10.78 7.52 34.89 3.16
4073 6174 9.293404 AGAGCAATAATATATGACATGCAACTT 57.707 29.630 10.78 0.00 34.89 2.66
4082 6183 3.963665 TGACATGCAACTTACACAAAGC 58.036 40.909 0.00 0.00 38.93 3.51
4083 6184 3.379688 TGACATGCAACTTACACAAAGCA 59.620 39.130 0.00 0.00 38.93 3.91
4084 6185 4.037803 TGACATGCAACTTACACAAAGCAT 59.962 37.500 0.00 0.00 42.82 3.79
4085 6186 5.240403 TGACATGCAACTTACACAAAGCATA 59.760 36.000 0.00 0.00 40.38 3.14
4086 6187 5.460646 ACATGCAACTTACACAAAGCATAC 58.539 37.500 0.00 0.00 40.38 2.39
4087 6188 4.497473 TGCAACTTACACAAAGCATACC 57.503 40.909 0.00 0.00 38.93 2.73
4088 6189 3.885901 TGCAACTTACACAAAGCATACCA 59.114 39.130 0.00 0.00 38.93 3.25
4089 6190 4.522405 TGCAACTTACACAAAGCATACCAT 59.478 37.500 0.00 0.00 38.93 3.55
4090 6191 5.095490 GCAACTTACACAAAGCATACCATC 58.905 41.667 0.00 0.00 38.93 3.51
4091 6192 5.335583 GCAACTTACACAAAGCATACCATCA 60.336 40.000 0.00 0.00 38.93 3.07
4092 6193 6.676950 CAACTTACACAAAGCATACCATCAA 58.323 36.000 0.00 0.00 38.93 2.57
4093 6194 6.892658 ACTTACACAAAGCATACCATCAAA 57.107 33.333 0.00 0.00 38.93 2.69
4094 6195 7.466746 ACTTACACAAAGCATACCATCAAAT 57.533 32.000 0.00 0.00 38.93 2.32
4095 6196 7.895759 ACTTACACAAAGCATACCATCAAATT 58.104 30.769 0.00 0.00 38.93 1.82
4096 6197 8.028938 ACTTACACAAAGCATACCATCAAATTC 58.971 33.333 0.00 0.00 38.93 2.17
4097 6198 5.401550 ACACAAAGCATACCATCAAATTCG 58.598 37.500 0.00 0.00 0.00 3.34
4098 6199 5.048083 ACACAAAGCATACCATCAAATTCGT 60.048 36.000 0.00 0.00 0.00 3.85
4099 6200 6.150307 ACACAAAGCATACCATCAAATTCGTA 59.850 34.615 0.00 0.00 0.00 3.43
4100 6201 7.148086 ACACAAAGCATACCATCAAATTCGTAT 60.148 33.333 0.00 0.00 0.00 3.06
4101 6202 7.166307 CACAAAGCATACCATCAAATTCGTATG 59.834 37.037 0.00 0.00 40.55 2.39
4102 6203 6.942532 AAGCATACCATCAAATTCGTATGT 57.057 33.333 0.00 0.00 40.02 2.29
4103 6204 6.304356 AGCATACCATCAAATTCGTATGTG 57.696 37.500 0.00 0.00 40.02 3.21
4104 6205 6.054941 AGCATACCATCAAATTCGTATGTGA 58.945 36.000 0.00 0.00 40.02 3.58
4105 6206 6.542005 AGCATACCATCAAATTCGTATGTGAA 59.458 34.615 0.00 0.00 40.02 3.18
4106 6207 7.066887 AGCATACCATCAAATTCGTATGTGAAA 59.933 33.333 0.00 0.00 40.02 2.69
4107 6208 7.376866 GCATACCATCAAATTCGTATGTGAAAG 59.623 37.037 0.00 0.00 40.02 2.62
4108 6209 8.611757 CATACCATCAAATTCGTATGTGAAAGA 58.388 33.333 0.00 0.00 35.44 2.52
4109 6210 7.447374 ACCATCAAATTCGTATGTGAAAGAA 57.553 32.000 0.00 0.00 31.82 2.52
4110 6211 7.530010 ACCATCAAATTCGTATGTGAAAGAAG 58.470 34.615 0.00 0.00 31.82 2.85
4111 6212 6.470235 CCATCAAATTCGTATGTGAAAGAAGC 59.530 38.462 0.00 0.00 31.82 3.86
4112 6213 6.801539 TCAAATTCGTATGTGAAAGAAGCT 57.198 33.333 0.00 0.00 0.00 3.74
4113 6214 7.202016 TCAAATTCGTATGTGAAAGAAGCTT 57.798 32.000 0.00 0.00 0.00 3.74
4114 6215 7.298122 TCAAATTCGTATGTGAAAGAAGCTTC 58.702 34.615 19.11 19.11 0.00 3.86
4115 6216 5.803020 ATTCGTATGTGAAAGAAGCTTCC 57.197 39.130 22.81 8.49 0.00 3.46
4116 6217 4.265904 TCGTATGTGAAAGAAGCTTCCA 57.734 40.909 22.81 13.30 0.00 3.53
4117 6218 4.637276 TCGTATGTGAAAGAAGCTTCCAA 58.363 39.130 22.81 3.43 0.00 3.53
4118 6219 5.245531 TCGTATGTGAAAGAAGCTTCCAAT 58.754 37.500 22.81 9.33 0.00 3.16
4119 6220 6.403049 TCGTATGTGAAAGAAGCTTCCAATA 58.597 36.000 22.81 9.02 0.00 1.90
4120 6221 6.876789 TCGTATGTGAAAGAAGCTTCCAATAA 59.123 34.615 22.81 5.39 0.00 1.40
4121 6222 6.961554 CGTATGTGAAAGAAGCTTCCAATAAC 59.038 38.462 22.81 14.71 0.00 1.89
4122 6223 6.899393 ATGTGAAAGAAGCTTCCAATAACA 57.101 33.333 22.81 19.26 0.00 2.41
4123 6224 6.707440 TGTGAAAGAAGCTTCCAATAACAA 57.293 33.333 22.81 0.00 0.00 2.83
4125 6226 7.202526 TGTGAAAGAAGCTTCCAATAACAAAG 58.797 34.615 22.81 0.00 0.00 2.77
4129 6230 6.959639 AGAAGCTTCCAATAACAAAGACAA 57.040 33.333 22.81 0.00 0.00 3.18
4133 6234 7.054491 AGCTTCCAATAACAAAGACAATGTT 57.946 32.000 0.00 0.00 43.14 2.71
4152 6253 8.250332 ACAATGTTATATAACCCTTTGCAACAG 58.750 33.333 20.35 0.00 35.37 3.16
4158 6259 0.475906 ACCCTTTGCAACAGAGCTCT 59.524 50.000 11.45 11.45 34.99 4.09
4166 6267 3.133691 TGCAACAGAGCTCTTGTTACAG 58.866 45.455 22.68 15.45 34.99 2.74
4226 6334 6.524734 TCACCTATTCGCAACATAGATGATT 58.475 36.000 0.00 0.00 23.65 2.57
4230 6338 6.580041 CCTATTCGCAACATAGATGATTTTGC 59.420 38.462 0.00 1.87 39.35 3.68
4241 6349 8.049117 ACATAGATGATTTTGCAGAAGGACTTA 58.951 33.333 0.00 0.00 0.00 2.24
4264 6372 1.176527 AACAAGGATGATGTTGCGGG 58.823 50.000 0.00 0.00 39.43 6.13
4265 6373 0.680921 ACAAGGATGATGTTGCGGGG 60.681 55.000 0.00 0.00 0.00 5.73
4266 6374 0.680921 CAAGGATGATGTTGCGGGGT 60.681 55.000 0.00 0.00 0.00 4.95
4267 6375 0.039618 AAGGATGATGTTGCGGGGTT 59.960 50.000 0.00 0.00 0.00 4.11
4298 6406 7.757941 TCAATGGAAGATTATGTCACAACAA 57.242 32.000 0.00 0.00 39.30 2.83
4302 6410 5.825151 TGGAAGATTATGTCACAACAACACA 59.175 36.000 0.00 0.00 39.30 3.72
4321 6436 0.101399 ATTGTTGTCGCCGTTTGCAA 59.899 45.000 0.00 0.00 41.33 4.08
4326 6441 2.203084 TCGCCGTTTGCAACTCCA 60.203 55.556 0.00 0.00 41.33 3.86
4345 6460 3.250762 TCCATCTTTGTTGCAGAAACTCG 59.749 43.478 0.00 0.00 39.70 4.18
4350 6465 2.595124 TGTTGCAGAAACTCGTCTCA 57.405 45.000 0.00 0.00 39.70 3.27
4351 6466 2.473816 TGTTGCAGAAACTCGTCTCAG 58.526 47.619 0.00 0.00 39.70 3.35
4370 6485 3.610669 AGCAGATCCCTAGCCGCG 61.611 66.667 0.00 0.00 0.00 6.46
4373 6488 4.924187 AGATCCCTAGCCGCGCCT 62.924 66.667 0.00 0.00 0.00 5.52
4392 6507 3.440127 CCTGTCTTCTCTCCTCTTCCTT 58.560 50.000 0.00 0.00 0.00 3.36
4396 6511 1.136110 CTTCTCTCCTCTTCCTTCGCC 59.864 57.143 0.00 0.00 0.00 5.54
4397 6512 1.032657 TCTCTCCTCTTCCTTCGCCG 61.033 60.000 0.00 0.00 0.00 6.46
4416 6531 2.131709 CCTCGCCTCCGGGATTACA 61.132 63.158 0.00 0.00 36.99 2.41
4425 6540 3.434453 CCTCCGGGATTACATTTGGCTTA 60.434 47.826 0.00 0.00 33.58 3.09
4469 6584 1.752498 CCATCCTTGCAGCTTTGCATA 59.248 47.619 0.98 0.00 44.94 3.14
4470 6585 2.364324 CCATCCTTGCAGCTTTGCATAT 59.636 45.455 0.98 0.00 44.94 1.78
4487 6602 3.318839 GCATATGTGCCCTAATCTTGCAA 59.681 43.478 2.47 0.00 45.76 4.08
4529 6644 1.671742 GCAAAGGTCGTCTCCCTCA 59.328 57.895 0.00 0.00 0.00 3.86
4549 6664 3.704566 TCAACTCGCAACATAGAGGGTAT 59.295 43.478 0.00 0.00 38.72 2.73
4550 6665 4.051922 CAACTCGCAACATAGAGGGTATC 58.948 47.826 0.00 0.00 38.72 2.24
4557 6672 4.321082 GCAACATAGAGGGTATCGGTCTAC 60.321 50.000 0.00 0.00 0.00 2.59
4562 6677 2.512896 AGAGGGTATCGGTCTACTGGAA 59.487 50.000 0.00 0.00 0.00 3.53
4577 6692 0.620556 TGGAAGGGATCTGAGGTTGC 59.379 55.000 0.00 0.00 0.00 4.17
4600 6715 2.357836 CATGGCTGGAGCTTGGGT 59.642 61.111 0.00 0.00 41.70 4.51
4608 6723 2.435059 GAGCTTGGGTCGTGGAGC 60.435 66.667 0.00 0.00 35.42 4.70
4609 6724 2.925170 AGCTTGGGTCGTGGAGCT 60.925 61.111 0.00 0.00 40.44 4.09
4614 6729 0.181587 TTGGGTCGTGGAGCTTTTGA 59.818 50.000 0.00 0.00 0.00 2.69
4615 6730 0.181587 TGGGTCGTGGAGCTTTTGAA 59.818 50.000 0.00 0.00 0.00 2.69
4618 6733 2.287608 GGGTCGTGGAGCTTTTGAAAAG 60.288 50.000 13.09 13.09 0.00 2.27
4629 6744 4.525874 AGCTTTTGAAAAGGAGATTGGAGG 59.474 41.667 18.30 0.00 0.00 4.30
4636 6751 0.944999 AGGAGATTGGAGGGAGGCTA 59.055 55.000 0.00 0.00 0.00 3.93
4646 6761 0.624500 AGGGAGGCTATTCTTGGGCA 60.625 55.000 0.00 0.00 0.00 5.36
4650 6765 0.480252 AGGCTATTCTTGGGCATCCC 59.520 55.000 0.00 0.00 45.71 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.147143 TGTCTCAACTTTGTACTAGCTCTAG 57.853 40.000 0.00 2.55 39.04 2.43
1 2 7.704578 ATGTCTCAACTTTGTACTAGCTCTA 57.295 36.000 0.00 0.00 0.00 2.43
2 3 6.597832 ATGTCTCAACTTTGTACTAGCTCT 57.402 37.500 0.00 0.00 0.00 4.09
3 4 7.659652 AAATGTCTCAACTTTGTACTAGCTC 57.340 36.000 0.00 0.00 0.00 4.09
4 5 9.726438 AATAAATGTCTCAACTTTGTACTAGCT 57.274 29.630 0.00 0.00 0.00 3.32
8 9 9.965824 CCAAAATAAATGTCTCAACTTTGTACT 57.034 29.630 0.00 0.00 0.00 2.73
9 10 9.191995 CCCAAAATAAATGTCTCAACTTTGTAC 57.808 33.333 0.00 0.00 0.00 2.90
10 11 9.137459 TCCCAAAATAAATGTCTCAACTTTGTA 57.863 29.630 0.00 0.00 0.00 2.41
11 12 7.926018 GTCCCAAAATAAATGTCTCAACTTTGT 59.074 33.333 0.00 0.00 0.00 2.83
12 13 7.925483 TGTCCCAAAATAAATGTCTCAACTTTG 59.075 33.333 0.00 0.00 0.00 2.77
13 14 8.017418 TGTCCCAAAATAAATGTCTCAACTTT 57.983 30.769 0.00 0.00 0.00 2.66
14 15 7.505585 TCTGTCCCAAAATAAATGTCTCAACTT 59.494 33.333 0.00 0.00 0.00 2.66
15 16 7.004086 TCTGTCCCAAAATAAATGTCTCAACT 58.996 34.615 0.00 0.00 0.00 3.16
16 17 7.214467 TCTGTCCCAAAATAAATGTCTCAAC 57.786 36.000 0.00 0.00 0.00 3.18
17 18 7.039784 CCTTCTGTCCCAAAATAAATGTCTCAA 60.040 37.037 0.00 0.00 0.00 3.02
18 19 6.434028 CCTTCTGTCCCAAAATAAATGTCTCA 59.566 38.462 0.00 0.00 0.00 3.27
19 20 6.659242 TCCTTCTGTCCCAAAATAAATGTCTC 59.341 38.462 0.00 0.00 0.00 3.36
20 21 6.552008 TCCTTCTGTCCCAAAATAAATGTCT 58.448 36.000 0.00 0.00 0.00 3.41
21 22 6.434340 ACTCCTTCTGTCCCAAAATAAATGTC 59.566 38.462 0.00 0.00 0.00 3.06
22 23 6.314917 ACTCCTTCTGTCCCAAAATAAATGT 58.685 36.000 0.00 0.00 0.00 2.71
23 24 6.840780 ACTCCTTCTGTCCCAAAATAAATG 57.159 37.500 0.00 0.00 0.00 2.32
25 26 9.457436 GTAATACTCCTTCTGTCCCAAAATAAA 57.543 33.333 0.00 0.00 0.00 1.40
26 27 8.050930 GGTAATACTCCTTCTGTCCCAAAATAA 58.949 37.037 0.00 0.00 0.00 1.40
27 28 7.404980 AGGTAATACTCCTTCTGTCCCAAAATA 59.595 37.037 0.00 0.00 30.18 1.40
28 29 6.217693 AGGTAATACTCCTTCTGTCCCAAAAT 59.782 38.462 0.00 0.00 30.18 1.82
29 30 5.550403 AGGTAATACTCCTTCTGTCCCAAAA 59.450 40.000 0.00 0.00 30.18 2.44
30 31 5.098663 AGGTAATACTCCTTCTGTCCCAAA 58.901 41.667 0.00 0.00 30.18 3.28
31 32 4.695606 AGGTAATACTCCTTCTGTCCCAA 58.304 43.478 0.00 0.00 30.18 4.12
32 33 4.348020 AGGTAATACTCCTTCTGTCCCA 57.652 45.455 0.00 0.00 30.18 4.37
33 34 6.553852 TGAATAGGTAATACTCCTTCTGTCCC 59.446 42.308 0.00 0.00 36.60 4.46
34 35 7.598759 TGAATAGGTAATACTCCTTCTGTCC 57.401 40.000 0.00 0.00 36.60 4.02
35 36 9.535878 CTTTGAATAGGTAATACTCCTTCTGTC 57.464 37.037 0.00 0.00 36.60 3.51
36 37 9.047947 ACTTTGAATAGGTAATACTCCTTCTGT 57.952 33.333 0.00 0.00 36.60 3.41
37 38 9.892130 AACTTTGAATAGGTAATACTCCTTCTG 57.108 33.333 0.00 0.00 36.60 3.02
49 50 9.575783 GTTTGTGTTTGAAACTTTGAATAGGTA 57.424 29.630 9.69 0.00 31.74 3.08
50 51 7.547722 GGTTTGTGTTTGAAACTTTGAATAGGT 59.452 33.333 9.69 0.00 34.36 3.08
51 52 7.011016 GGGTTTGTGTTTGAAACTTTGAATAGG 59.989 37.037 9.69 0.00 34.36 2.57
52 53 7.547370 TGGGTTTGTGTTTGAAACTTTGAATAG 59.453 33.333 9.69 0.00 34.36 1.73
53 54 7.386851 TGGGTTTGTGTTTGAAACTTTGAATA 58.613 30.769 9.69 0.00 34.36 1.75
54 55 6.234177 TGGGTTTGTGTTTGAAACTTTGAAT 58.766 32.000 9.69 0.00 34.36 2.57
55 56 5.611374 TGGGTTTGTGTTTGAAACTTTGAA 58.389 33.333 9.69 0.00 34.36 2.69
56 57 5.215252 TGGGTTTGTGTTTGAAACTTTGA 57.785 34.783 9.69 0.00 34.36 2.69
57 58 5.613577 CGTTGGGTTTGTGTTTGAAACTTTG 60.614 40.000 9.69 0.00 34.36 2.77
58 59 4.449405 CGTTGGGTTTGTGTTTGAAACTTT 59.551 37.500 9.69 0.00 34.36 2.66
59 60 3.991121 CGTTGGGTTTGTGTTTGAAACTT 59.009 39.130 9.69 0.00 34.36 2.66
60 61 3.580731 CGTTGGGTTTGTGTTTGAAACT 58.419 40.909 9.69 0.00 34.36 2.66
61 62 2.668945 CCGTTGGGTTTGTGTTTGAAAC 59.331 45.455 0.14 0.14 33.34 2.78
62 63 2.353803 CCCGTTGGGTTTGTGTTTGAAA 60.354 45.455 0.00 0.00 38.25 2.69
117 120 2.903547 TTGCTCGCTTTTGTCGGCC 61.904 57.895 0.00 0.00 0.00 6.13
119 122 1.438710 CGTTGCTCGCTTTTGTCGG 60.439 57.895 0.00 0.00 0.00 4.79
160 163 0.685660 GGACCTCGGAGTTGGTCTTT 59.314 55.000 12.87 0.00 45.58 2.52
231 407 1.227853 GAGTGGTCGTGGCTTGGTT 60.228 57.895 0.00 0.00 0.00 3.67
244 420 0.107654 GTGAGAATTCCGGGGAGTGG 60.108 60.000 0.00 0.00 0.00 4.00
340 524 4.308458 TCCAGGTCGGGCACGTTG 62.308 66.667 8.89 5.74 41.85 4.10
341 525 4.309950 GTCCAGGTCGGGCACGTT 62.310 66.667 8.89 0.00 40.18 3.99
488 672 3.023949 GCACCTCATCGTCCTGCCT 62.024 63.158 0.00 0.00 0.00 4.75
508 692 5.644977 TGATATCGGTGGACTAGCAATAG 57.355 43.478 0.00 0.00 0.00 1.73
513 697 4.083802 GCAATTTGATATCGGTGGACTAGC 60.084 45.833 0.00 0.00 0.00 3.42
588 774 1.621317 CCCGCCCAAAACCTTAACAAT 59.379 47.619 0.00 0.00 0.00 2.71
610 796 5.479716 TTCCAGAAGAAACAAAGTCGAAC 57.520 39.130 0.00 0.00 0.00 3.95
630 816 9.822185 AAATTAATCACAATGCTTCCCTATTTC 57.178 29.630 0.00 0.00 0.00 2.17
634 820 8.055181 AGAGAAATTAATCACAATGCTTCCCTA 58.945 33.333 0.00 0.00 0.00 3.53
657 844 3.951775 ACCAGTCTGTTCAAGCTAGAG 57.048 47.619 0.00 0.00 0.00 2.43
659 846 4.792521 AGTACCAGTCTGTTCAAGCTAG 57.207 45.455 0.00 0.00 0.00 3.42
676 903 7.331193 ACGAGACAATTCATCAAGGTTTAGTAC 59.669 37.037 0.00 0.00 0.00 2.73
717 944 3.629398 GGTAAGTTAGTAGCTAGTGCGGA 59.371 47.826 11.53 0.00 45.42 5.54
734 961 3.741344 CGCCTTTTATCCGATCTGGTAAG 59.259 47.826 3.97 0.00 39.52 2.34
856 1093 0.748005 CCGGGGAACTGCATGTAAGG 60.748 60.000 0.00 0.00 34.42 2.69
880 1117 8.306761 AGCAAGAGTCGGAAAATCAAAATAAAT 58.693 29.630 0.00 0.00 0.00 1.40
1122 1386 2.348411 AGCCCCAATTTCCACTATCG 57.652 50.000 0.00 0.00 0.00 2.92
1207 1479 1.535462 GGAAGAAAGCTTAGCGCACAA 59.465 47.619 11.47 1.54 42.61 3.33
1335 1619 3.733443 AGGAAGCATGTCAAAACCAAC 57.267 42.857 0.00 0.00 0.00 3.77
1341 1625 5.070180 TGATTTTGGAAGGAAGCATGTCAAA 59.930 36.000 0.00 0.00 0.00 2.69
1353 1637 6.208204 CCTTGCTAGGATATGATTTTGGAAGG 59.792 42.308 8.73 0.00 45.05 3.46
1388 1672 3.125316 CCATTTAGCGGTGAGAGTGAAAC 59.875 47.826 0.00 0.00 0.00 2.78
1566 1850 2.638981 CTTTGGGTGCTGGGGTGTCA 62.639 60.000 0.00 0.00 0.00 3.58
1567 1851 1.903404 CTTTGGGTGCTGGGGTGTC 60.903 63.158 0.00 0.00 0.00 3.67
1568 1852 1.357272 TACTTTGGGTGCTGGGGTGT 61.357 55.000 0.00 0.00 0.00 4.16
1576 1860 2.287915 CACGCATATCTACTTTGGGTGC 59.712 50.000 6.44 0.00 43.98 5.01
1623 1913 3.201487 TGAGCATTGAAGGGATGACAGAT 59.799 43.478 0.00 0.00 0.00 2.90
1629 1919 2.054232 AGCTGAGCATTGAAGGGATG 57.946 50.000 7.39 0.00 0.00 3.51
1721 2011 7.396540 AGCATAAAGGAAACAGATTTACCTG 57.603 36.000 0.00 0.00 39.93 4.00
1867 2254 5.586877 AGTTACCACATACCAAGGAGACTA 58.413 41.667 0.00 0.00 42.68 2.59
1874 2261 5.437060 AGGCATTAGTTACCACATACCAAG 58.563 41.667 0.00 0.00 0.00 3.61
1878 2265 7.931948 ACTTCATAGGCATTAGTTACCACATAC 59.068 37.037 0.00 0.00 0.00 2.39
1887 2274 4.335594 GCGGAAACTTCATAGGCATTAGTT 59.664 41.667 0.00 0.00 0.00 2.24
1903 2290 0.373716 CTACCATGAAGCGCGGAAAC 59.626 55.000 8.83 0.00 0.00 2.78
1911 2298 5.824904 ATGTTCACATTCTACCATGAAGC 57.175 39.130 0.00 0.00 31.94 3.86
1971 2362 1.202770 CGGGGTCACTGTTCTTCCTTT 60.203 52.381 0.00 0.00 0.00 3.11
1978 2369 0.319641 GAGTCACGGGGTCACTGTTC 60.320 60.000 0.00 0.00 36.23 3.18
1980 2372 0.759436 AAGAGTCACGGGGTCACTGT 60.759 55.000 0.00 0.00 40.00 3.55
1981 2373 0.393077 AAAGAGTCACGGGGTCACTG 59.607 55.000 0.00 0.00 0.00 3.66
2015 2411 4.162072 TCACAAACACACATCAAAACGTG 58.838 39.130 0.00 0.00 39.10 4.49
2190 2595 2.079158 ACAATGTCTCCATGCACTTCG 58.921 47.619 0.00 0.00 0.00 3.79
2261 2666 1.667151 TGGAAGCATTGCACTTGGC 59.333 52.632 11.91 0.00 43.23 4.52
2323 2728 1.144057 AAGCCTATCCCAGCGTTCG 59.856 57.895 0.00 0.00 0.00 3.95
2347 2752 0.243907 TCGAGTCCAAGGCTTTCTCG 59.756 55.000 26.12 26.12 45.85 4.04
2356 2761 0.803768 CGTCTGCCATCGAGTCCAAG 60.804 60.000 0.00 0.00 0.00 3.61
2561 2966 1.446272 GGTCTCACCGAGGCGAAAG 60.446 63.158 0.00 0.00 34.76 2.62
2565 2970 1.079127 ATTTGGTCTCACCGAGGCG 60.079 57.895 0.00 0.00 42.58 5.52
2566 2971 0.036388 TCATTTGGTCTCACCGAGGC 60.036 55.000 0.00 0.00 42.58 4.70
2567 2972 2.009042 GCTCATTTGGTCTCACCGAGG 61.009 57.143 0.00 0.00 42.58 4.63
2568 2973 1.338105 TGCTCATTTGGTCTCACCGAG 60.338 52.381 0.00 0.00 42.58 4.63
2569 2974 0.684535 TGCTCATTTGGTCTCACCGA 59.315 50.000 0.00 0.00 42.58 4.69
2570 2975 1.399440 CATGCTCATTTGGTCTCACCG 59.601 52.381 0.00 0.00 42.58 4.94
2571 2976 1.133790 GCATGCTCATTTGGTCTCACC 59.866 52.381 11.37 0.00 39.22 4.02
2572 2977 1.814394 TGCATGCTCATTTGGTCTCAC 59.186 47.619 20.33 0.00 0.00 3.51
2573 2978 1.814394 GTGCATGCTCATTTGGTCTCA 59.186 47.619 20.33 0.00 0.00 3.27
2574 2979 2.089980 AGTGCATGCTCATTTGGTCTC 58.910 47.619 20.33 0.00 0.00 3.36
2583 2994 1.877637 AAACGTGTAGTGCATGCTCA 58.122 45.000 20.33 9.96 37.62 4.26
2584 2995 3.242413 CCATAAACGTGTAGTGCATGCTC 60.242 47.826 20.33 15.94 37.62 4.26
2649 3061 1.154205 GCATCATGGTCTTCGGGTCG 61.154 60.000 0.00 0.00 0.00 4.79
2655 3067 6.199937 AGTTTACATTGCATCATGGTCTTC 57.800 37.500 3.53 0.00 0.00 2.87
2745 3189 2.176798 CTCCCTCTCACTCATCCTACCT 59.823 54.545 0.00 0.00 0.00 3.08
2796 3240 7.491696 GGACATAACCGAACATCCTTATATAGC 59.508 40.741 0.00 0.00 0.00 2.97
2805 3249 1.210967 TGGGGACATAACCGAACATCC 59.789 52.381 0.00 0.00 33.40 3.51
3317 3858 4.087892 GGCTTCTGCTGGGCTCGA 62.088 66.667 8.65 0.00 39.59 4.04
3359 3900 5.046910 TGAAATTTCTCTCACCGCATTTC 57.953 39.130 18.64 0.00 33.22 2.17
3418 3959 4.878397 GGACTGAATTCTCGTCCATTCATT 59.122 41.667 27.90 2.59 41.24 2.57
3429 3970 3.452474 CGGTGAGATGGACTGAATTCTC 58.548 50.000 7.05 0.00 36.09 2.87
3459 4000 4.023279 TGGAAAATTGGATTCGTCACACAG 60.023 41.667 0.00 0.00 0.00 3.66
3482 4023 9.584008 TCAATTAATCGGTTAGGAGTATAGAGT 57.416 33.333 0.00 0.00 0.00 3.24
3551 4094 3.896317 GGCACGCCCAACAAAATAA 57.104 47.368 0.00 0.00 0.00 1.40
3649 4192 3.823304 GCTAGAATTTATCAAGCCCCAGG 59.177 47.826 0.00 0.00 0.00 4.45
3704 4247 1.673920 GCAAACTCGACCCAAAGTTGA 59.326 47.619 0.00 0.00 35.93 3.18
3712 4255 1.659098 CAGTAATCGCAAACTCGACCC 59.341 52.381 0.00 0.00 41.62 4.46
3768 4311 7.040548 CCTTTTTCCCATATTGCACACATTTTT 60.041 33.333 0.00 0.00 0.00 1.94
3779 5879 6.405842 GCTAACTGACCCTTTTTCCCATATTG 60.406 42.308 0.00 0.00 0.00 1.90
3789 5889 6.670695 ATCATTTTGCTAACTGACCCTTTT 57.329 33.333 3.26 0.00 0.00 2.27
3793 5893 5.643379 TCAATCATTTTGCTAACTGACCC 57.357 39.130 3.26 0.00 0.00 4.46
3801 5901 5.592282 TCCGCCTATTTCAATCATTTTGCTA 59.408 36.000 0.00 0.00 0.00 3.49
3906 6007 4.697756 TGCGAGGCAAGTTCCCCG 62.698 66.667 0.00 0.00 34.76 5.73
3921 6022 0.324943 TGGTTAGCTCCACCTCTTGC 59.675 55.000 14.60 0.00 35.07 4.01
3939 6040 0.248336 TAACGAGCATACGTCGGCTG 60.248 55.000 17.41 12.06 45.83 4.85
3944 6045 6.758593 TGGAATTTATAACGAGCATACGTC 57.241 37.500 0.00 0.00 45.83 4.34
3949 6050 7.439955 TGTTCGTATGGAATTTATAACGAGCAT 59.560 33.333 14.84 0.00 36.92 3.79
3950 6051 6.757478 TGTTCGTATGGAATTTATAACGAGCA 59.243 34.615 14.84 14.84 36.92 4.26
3982 6083 9.892444 TCTATATAAATGGAAGGAAGGAGTACA 57.108 33.333 0.00 0.00 0.00 2.90
3992 6093 7.225538 CGCATTAGGCTCTATATAAATGGAAGG 59.774 40.741 0.00 0.00 41.67 3.46
3994 6095 7.620880 ACGCATTAGGCTCTATATAAATGGAA 58.379 34.615 0.00 0.00 41.67 3.53
3999 6100 9.332502 TCAAAAACGCATTAGGCTCTATATAAA 57.667 29.630 0.00 0.00 41.67 1.40
4005 6106 3.938963 CCTCAAAAACGCATTAGGCTCTA 59.061 43.478 0.00 0.00 41.67 2.43
4006 6107 2.749621 CCTCAAAAACGCATTAGGCTCT 59.250 45.455 0.00 0.00 41.67 4.09
4007 6108 2.732282 GCCTCAAAAACGCATTAGGCTC 60.732 50.000 0.00 0.00 44.85 4.70
4009 6110 1.629013 GCCTCAAAAACGCATTAGGC 58.371 50.000 0.00 0.00 42.40 3.93
4010 6111 4.156008 AGTTAGCCTCAAAAACGCATTAGG 59.844 41.667 0.00 0.00 0.00 2.69
4011 6112 5.296813 AGTTAGCCTCAAAAACGCATTAG 57.703 39.130 0.00 0.00 0.00 1.73
4012 6113 5.699097 AAGTTAGCCTCAAAAACGCATTA 57.301 34.783 0.00 0.00 0.00 1.90
4013 6114 4.584327 AAGTTAGCCTCAAAAACGCATT 57.416 36.364 0.00 0.00 0.00 3.56
4014 6115 4.037446 TCAAAGTTAGCCTCAAAAACGCAT 59.963 37.500 0.00 0.00 0.00 4.73
4015 6116 3.378742 TCAAAGTTAGCCTCAAAAACGCA 59.621 39.130 0.00 0.00 0.00 5.24
4016 6117 3.729217 GTCAAAGTTAGCCTCAAAAACGC 59.271 43.478 0.00 0.00 0.00 4.84
4017 6118 4.201970 TGGTCAAAGTTAGCCTCAAAAACG 60.202 41.667 0.00 0.00 0.00 3.60
4020 6121 5.923733 TTTGGTCAAAGTTAGCCTCAAAA 57.076 34.783 0.00 0.00 0.00 2.44
4022 6123 4.892934 ACATTTGGTCAAAGTTAGCCTCAA 59.107 37.500 2.55 0.00 33.32 3.02
4023 6124 4.469657 ACATTTGGTCAAAGTTAGCCTCA 58.530 39.130 2.55 0.00 33.32 3.86
4024 6125 5.453567 AACATTTGGTCAAAGTTAGCCTC 57.546 39.130 2.55 0.00 33.32 4.70
4027 6128 6.086871 GCTCTAACATTTGGTCAAAGTTAGC 58.913 40.000 22.83 17.67 39.10 3.09
4028 6129 7.202016 TGCTCTAACATTTGGTCAAAGTTAG 57.798 36.000 22.30 22.30 39.68 2.34
4043 6144 9.723601 TGCATGTCATATATTATTGCTCTAACA 57.276 29.630 0.00 0.00 0.00 2.41
4046 6147 9.948964 AGTTGCATGTCATATATTATTGCTCTA 57.051 29.630 0.00 0.00 0.00 2.43
4047 6148 8.859236 AGTTGCATGTCATATATTATTGCTCT 57.141 30.769 0.00 0.00 0.00 4.09
4056 6157 8.131100 GCTTTGTGTAAGTTGCATGTCATATAT 58.869 33.333 0.00 0.00 36.19 0.86
4057 6158 7.120432 TGCTTTGTGTAAGTTGCATGTCATATA 59.880 33.333 0.00 0.00 36.19 0.86
4058 6159 6.072008 TGCTTTGTGTAAGTTGCATGTCATAT 60.072 34.615 0.00 0.00 36.19 1.78
4059 6160 5.240403 TGCTTTGTGTAAGTTGCATGTCATA 59.760 36.000 0.00 0.00 36.19 2.15
4060 6161 4.037803 TGCTTTGTGTAAGTTGCATGTCAT 59.962 37.500 0.00 0.00 36.19 3.06
4061 6162 3.379688 TGCTTTGTGTAAGTTGCATGTCA 59.620 39.130 0.00 0.00 36.19 3.58
4062 6163 3.963665 TGCTTTGTGTAAGTTGCATGTC 58.036 40.909 0.00 0.00 36.19 3.06
4063 6164 4.589216 ATGCTTTGTGTAAGTTGCATGT 57.411 36.364 0.00 0.00 39.30 3.21
4064 6165 4.858692 GGTATGCTTTGTGTAAGTTGCATG 59.141 41.667 8.29 0.00 40.65 4.06
4065 6166 4.522405 TGGTATGCTTTGTGTAAGTTGCAT 59.478 37.500 0.00 0.00 42.64 3.96
4068 6169 6.252967 TGATGGTATGCTTTGTGTAAGTTG 57.747 37.500 0.00 0.00 36.19 3.16
4069 6170 6.892658 TTGATGGTATGCTTTGTGTAAGTT 57.107 33.333 0.00 0.00 36.19 2.66
4070 6171 6.892658 TTTGATGGTATGCTTTGTGTAAGT 57.107 33.333 0.00 0.00 36.19 2.24
4071 6172 7.218773 CGAATTTGATGGTATGCTTTGTGTAAG 59.781 37.037 0.00 0.00 36.90 2.34
4072 6173 7.026562 CGAATTTGATGGTATGCTTTGTGTAA 58.973 34.615 0.00 0.00 0.00 2.41
4073 6174 6.150307 ACGAATTTGATGGTATGCTTTGTGTA 59.850 34.615 0.00 0.00 0.00 2.90
4074 6175 5.048083 ACGAATTTGATGGTATGCTTTGTGT 60.048 36.000 0.00 0.00 0.00 3.72
4077 6178 7.166307 CACATACGAATTTGATGGTATGCTTTG 59.834 37.037 0.00 0.00 43.66 2.77
4078 6179 7.066887 TCACATACGAATTTGATGGTATGCTTT 59.933 33.333 0.00 0.00 43.66 3.51
4079 6180 6.542005 TCACATACGAATTTGATGGTATGCTT 59.458 34.615 0.00 0.00 43.66 3.91
4080 6181 6.054941 TCACATACGAATTTGATGGTATGCT 58.945 36.000 0.00 0.00 43.66 3.79
4081 6182 6.299023 TCACATACGAATTTGATGGTATGC 57.701 37.500 0.00 0.00 43.66 3.14
4082 6183 8.611757 TCTTTCACATACGAATTTGATGGTATG 58.388 33.333 0.00 8.12 44.76 2.39
4083 6184 8.731275 TCTTTCACATACGAATTTGATGGTAT 57.269 30.769 0.00 0.00 0.00 2.73
4084 6185 8.554835 TTCTTTCACATACGAATTTGATGGTA 57.445 30.769 0.00 0.00 0.00 3.25
4085 6186 7.447374 TTCTTTCACATACGAATTTGATGGT 57.553 32.000 0.00 0.00 0.00 3.55
4086 6187 6.470235 GCTTCTTTCACATACGAATTTGATGG 59.530 38.462 0.00 0.00 0.00 3.51
4087 6188 7.246311 AGCTTCTTTCACATACGAATTTGATG 58.754 34.615 0.00 2.13 0.00 3.07
4088 6189 7.383102 AGCTTCTTTCACATACGAATTTGAT 57.617 32.000 0.00 0.00 0.00 2.57
4089 6190 6.801539 AGCTTCTTTCACATACGAATTTGA 57.198 33.333 0.00 0.00 0.00 2.69
4090 6191 6.524586 GGAAGCTTCTTTCACATACGAATTTG 59.475 38.462 25.05 0.00 0.00 2.32
4091 6192 6.206634 TGGAAGCTTCTTTCACATACGAATTT 59.793 34.615 25.05 0.00 0.00 1.82
4092 6193 5.705441 TGGAAGCTTCTTTCACATACGAATT 59.295 36.000 25.05 0.00 0.00 2.17
4093 6194 5.245531 TGGAAGCTTCTTTCACATACGAAT 58.754 37.500 25.05 0.00 0.00 3.34
4094 6195 4.637276 TGGAAGCTTCTTTCACATACGAA 58.363 39.130 25.05 0.00 0.00 3.85
4095 6196 4.265904 TGGAAGCTTCTTTCACATACGA 57.734 40.909 25.05 0.00 0.00 3.43
4096 6197 5.551760 ATTGGAAGCTTCTTTCACATACG 57.448 39.130 25.05 0.00 0.00 3.06
4097 6198 7.816640 TGTTATTGGAAGCTTCTTTCACATAC 58.183 34.615 25.05 13.29 0.00 2.39
4098 6199 7.994425 TGTTATTGGAAGCTTCTTTCACATA 57.006 32.000 25.05 11.98 0.00 2.29
4099 6200 6.899393 TGTTATTGGAAGCTTCTTTCACAT 57.101 33.333 25.05 12.77 0.00 3.21
4100 6201 6.707440 TTGTTATTGGAAGCTTCTTTCACA 57.293 33.333 25.05 17.51 0.00 3.58
4101 6202 7.379797 GTCTTTGTTATTGGAAGCTTCTTTCAC 59.620 37.037 25.05 15.44 0.00 3.18
4102 6203 7.068103 TGTCTTTGTTATTGGAAGCTTCTTTCA 59.932 33.333 25.05 12.63 0.00 2.69
4103 6204 7.425606 TGTCTTTGTTATTGGAAGCTTCTTTC 58.574 34.615 25.05 10.10 0.00 2.62
4104 6205 7.346751 TGTCTTTGTTATTGGAAGCTTCTTT 57.653 32.000 25.05 12.82 0.00 2.52
4105 6206 6.959639 TGTCTTTGTTATTGGAAGCTTCTT 57.040 33.333 25.05 13.15 0.00 2.52
4106 6207 6.959639 TTGTCTTTGTTATTGGAAGCTTCT 57.040 33.333 25.05 9.08 0.00 2.85
4107 6208 7.147976 ACATTGTCTTTGTTATTGGAAGCTTC 58.852 34.615 18.54 18.54 0.00 3.86
4108 6209 7.054491 ACATTGTCTTTGTTATTGGAAGCTT 57.946 32.000 0.00 0.00 0.00 3.74
4109 6210 6.655078 ACATTGTCTTTGTTATTGGAAGCT 57.345 33.333 0.00 0.00 0.00 3.74
4110 6211 8.986477 ATAACATTGTCTTTGTTATTGGAAGC 57.014 30.769 3.81 0.00 44.05 3.86
4121 6222 9.301153 GCAAAGGGTTATATAACATTGTCTTTG 57.699 33.333 27.01 27.01 37.92 2.77
4122 6223 9.030452 TGCAAAGGGTTATATAACATTGTCTTT 57.970 29.630 23.59 18.93 37.92 2.52
4123 6224 8.588290 TGCAAAGGGTTATATAACATTGTCTT 57.412 30.769 23.59 15.45 37.92 3.01
4125 6226 8.247562 TGTTGCAAAGGGTTATATAACATTGTC 58.752 33.333 23.59 18.52 37.92 3.18
4129 6230 7.201821 GCTCTGTTGCAAAGGGTTATATAACAT 60.202 37.037 23.59 11.29 37.92 2.71
4133 6234 6.001449 AGCTCTGTTGCAAAGGGTTATATA 57.999 37.500 0.00 0.00 34.99 0.86
4137 6238 2.106511 AGAGCTCTGTTGCAAAGGGTTA 59.893 45.455 17.42 0.00 34.99 2.85
4144 6245 3.540617 TGTAACAAGAGCTCTGTTGCAA 58.459 40.909 29.07 19.84 37.36 4.08
4146 6247 3.393800 TCTGTAACAAGAGCTCTGTTGC 58.606 45.455 27.53 26.46 37.36 4.17
4166 6267 5.712152 ACAACCTCTGATCCAAATGTTTC 57.288 39.130 0.00 0.00 0.00 2.78
4197 6305 2.333926 TGTTGCGAATAGGTGAAGACG 58.666 47.619 0.00 0.00 0.00 4.18
4230 6338 4.326826 TCCTTGTTGCATAAGTCCTTCTG 58.673 43.478 9.54 0.00 0.00 3.02
4249 6357 0.039618 AAACCCCGCAACATCATCCT 59.960 50.000 0.00 0.00 0.00 3.24
4250 6358 0.894835 AAAACCCCGCAACATCATCC 59.105 50.000 0.00 0.00 0.00 3.51
4275 6383 7.326789 GTGTTGTTGTGACATAATCTTCCATTG 59.673 37.037 0.00 0.00 35.29 2.82
4280 6388 7.862372 ACAATGTGTTGTTGTGACATAATCTTC 59.138 33.333 0.00 0.00 46.07 2.87
4298 6406 0.736053 AAACGGCGACAACAATGTGT 59.264 45.000 16.62 0.00 40.74 3.72
4302 6410 4.626225 GCAAACGGCGACAACAAT 57.374 50.000 16.62 0.00 0.00 2.71
4321 6436 4.210331 AGTTTCTGCAACAAAGATGGAGT 58.790 39.130 0.00 0.00 37.93 3.85
4326 6441 4.130118 AGACGAGTTTCTGCAACAAAGAT 58.870 39.130 0.00 0.00 37.93 2.40
4336 6451 1.066914 GCTGCTGAGACGAGTTTCTG 58.933 55.000 0.00 0.00 0.00 3.02
4345 6460 1.340889 CTAGGGATCTGCTGCTGAGAC 59.659 57.143 14.50 10.60 0.00 3.36
4350 6465 2.506061 CGGCTAGGGATCTGCTGCT 61.506 63.158 0.00 0.00 0.00 4.24
4351 6466 2.030262 CGGCTAGGGATCTGCTGC 59.970 66.667 0.00 0.00 0.00 5.25
4370 6485 1.480545 GGAAGAGGAGAGAAGACAGGC 59.519 57.143 0.00 0.00 0.00 4.85
4373 6488 3.085533 CGAAGGAAGAGGAGAGAAGACA 58.914 50.000 0.00 0.00 0.00 3.41
4377 6492 1.187087 GGCGAAGGAAGAGGAGAGAA 58.813 55.000 0.00 0.00 0.00 2.87
4409 6524 6.918022 GCACTATTGTAAGCCAAATGTAATCC 59.082 38.462 0.00 0.00 36.44 3.01
4416 6531 4.006989 TCGTGCACTATTGTAAGCCAAAT 58.993 39.130 16.19 0.00 36.44 2.32
4425 6540 1.877637 TGCTTGTCGTGCACTATTGT 58.122 45.000 16.19 0.00 35.31 2.71
4469 6584 1.745087 CGTTGCAAGATTAGGGCACAT 59.255 47.619 0.00 0.00 37.26 3.21
4470 6585 1.164411 CGTTGCAAGATTAGGGCACA 58.836 50.000 0.00 0.00 37.26 4.57
4504 6619 1.467734 GAGACGACCTTTGCGTAGAGA 59.532 52.381 0.00 0.00 42.77 3.10
4529 6644 3.243434 CGATACCCTCTATGTTGCGAGTT 60.243 47.826 0.00 0.00 0.00 3.01
4549 6664 1.569548 AGATCCCTTCCAGTAGACCGA 59.430 52.381 0.00 0.00 0.00 4.69
4550 6665 1.683917 CAGATCCCTTCCAGTAGACCG 59.316 57.143 0.00 0.00 0.00 4.79
4557 6672 1.407989 GCAACCTCAGATCCCTTCCAG 60.408 57.143 0.00 0.00 0.00 3.86
4562 6677 3.036429 GCCGCAACCTCAGATCCCT 62.036 63.158 0.00 0.00 0.00 4.20
4600 6715 2.878406 CTCCTTTTCAAAAGCTCCACGA 59.122 45.455 4.15 0.00 0.00 4.35
4608 6723 5.079643 TCCCTCCAATCTCCTTTTCAAAAG 58.920 41.667 2.55 2.55 0.00 2.27
4609 6724 5.073437 TCCCTCCAATCTCCTTTTCAAAA 57.927 39.130 0.00 0.00 0.00 2.44
4614 6729 1.286257 GCCTCCCTCCAATCTCCTTTT 59.714 52.381 0.00 0.00 0.00 2.27
4615 6730 0.922626 GCCTCCCTCCAATCTCCTTT 59.077 55.000 0.00 0.00 0.00 3.11
4618 6733 2.037385 ATAGCCTCCCTCCAATCTCC 57.963 55.000 0.00 0.00 0.00 3.71
4629 6744 1.546548 GGATGCCCAAGAATAGCCTCC 60.547 57.143 0.00 0.00 34.78 4.30
4636 6751 2.603008 CCCGGGATGCCCAAGAAT 59.397 61.111 18.48 0.00 45.83 2.40
4646 6761 2.784654 CCTCTCTCTCCCCCGGGAT 61.785 68.421 26.32 0.00 44.24 3.85
4650 6765 1.454847 CTCACCTCTCTCTCCCCCG 60.455 68.421 0.00 0.00 0.00 5.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.