Multiple sequence alignment - TraesCS2B01G466600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G466600 chr2B 100.000 3758 0 0 1 3758 662375739 662379496 0.000000e+00 6940
1 TraesCS2B01G466600 chr2B 100.000 299 0 0 4168 4466 662379906 662380204 1.820000e-153 553
2 TraesCS2B01G466600 chr2B 79.524 757 128 18 991 1740 662586606 662587342 8.570000e-142 514
3 TraesCS2B01G466600 chr2B 87.119 427 47 8 2022 2444 662652159 662652581 1.120000e-130 477
4 TraesCS2B01G466600 chr2B 84.915 411 60 2 2022 2431 662579792 662580201 8.940000e-112 414
5 TraesCS2B01G466600 chr2B 85.577 208 28 2 4181 4386 49832573 49832366 2.710000e-52 217
6 TraesCS2B01G466600 chr2B 84.615 182 25 3 363 542 662650962 662651142 1.280000e-40 178
7 TraesCS2B01G466600 chr2A 92.210 3620 196 32 1 3571 695152879 695156461 0.000000e+00 5044
8 TraesCS2B01G466600 chr2A 87.619 420 50 2 2022 2440 695296456 695296874 1.870000e-133 486
9 TraesCS2B01G466600 chr2A 81.615 582 103 4 1185 1764 695295408 695295987 3.120000e-131 479
10 TraesCS2B01G466600 chr2A 78.312 770 119 20 991 1740 695161524 695162265 1.890000e-123 453
11 TraesCS2B01G466600 chr2A 83.704 405 62 4 2042 2444 727713240 727712838 3.260000e-101 379
12 TraesCS2B01G466600 chr2A 84.281 299 47 0 2018 2316 695187694 695187992 4.370000e-75 292
13 TraesCS2B01G466600 chr2D 95.153 2290 78 10 1299 3571 555614473 555616746 0.000000e+00 3583
14 TraesCS2B01G466600 chr2D 89.923 1300 68 14 1 1275 555613217 555614478 0.000000e+00 1616
15 TraesCS2B01G466600 chr2D 79.388 752 134 15 991 1740 555852795 555853527 1.110000e-140 510
16 TraesCS2B01G466600 chr2D 85.093 483 53 12 1967 2443 555870179 555870648 4.040000e-130 475
17 TraesCS2B01G466600 chr2D 82.474 485 79 4 1259 1737 555729072 555729556 1.920000e-113 420
18 TraesCS2B01G466600 chr2D 83.412 422 67 3 2025 2444 593172437 593172017 5.420000e-104 388
19 TraesCS2B01G466600 chr7D 93.213 221 13 1 4168 4386 627515550 627515770 1.550000e-84 324
20 TraesCS2B01G466600 chr7D 88.043 184 13 4 3572 3755 627515327 627515501 4.530000e-50 209
21 TraesCS2B01G466600 chr7D 98.851 87 1 0 4380 4466 614120658 614120572 5.980000e-34 156
22 TraesCS2B01G466600 chr7D 96.739 92 2 1 4375 4466 520635637 520635727 7.740000e-33 152
23 TraesCS2B01G466600 chr1A 85.845 219 29 1 4168 4384 516768285 516768067 9.660000e-57 231
24 TraesCS2B01G466600 chr5B 85.648 216 29 1 4168 4381 580274865 580275080 4.490000e-55 226
25 TraesCS2B01G466600 chr1D 85.648 216 29 1 4168 4381 55700900 55701115 4.490000e-55 226
26 TraesCS2B01G466600 chr1D 85.308 211 29 1 4178 4386 338929262 338929472 2.710000e-52 217
27 TraesCS2B01G466600 chr5A 84.615 221 32 1 4168 4386 560809779 560809999 7.520000e-53 219
28 TraesCS2B01G466600 chr3B 85.047 214 30 1 4173 4384 732472011 732472224 2.710000e-52 217
29 TraesCS2B01G466600 chr3B 97.778 90 1 1 4377 4466 683979841 683979753 2.150000e-33 154
30 TraesCS2B01G466600 chrUn 92.667 150 10 1 3572 3721 428164265 428164413 9.730000e-52 215
31 TraesCS2B01G466600 chr3D 84.163 221 32 2 4168 4386 24613574 24613793 1.260000e-50 211
32 TraesCS2B01G466600 chr3D 92.523 107 4 4 4361 4466 598151426 598151323 2.780000e-32 150
33 TraesCS2B01G466600 chr6A 98.851 87 1 0 4380 4466 24007795 24007881 5.980000e-34 156
34 TraesCS2B01G466600 chr5D 98.851 87 1 0 4380 4466 442105527 442105613 5.980000e-34 156
35 TraesCS2B01G466600 chr4B 93.069 101 7 0 4366 4466 382357612 382357712 1.000000e-31 148
36 TraesCS2B01G466600 chr4B 93.878 98 5 1 4366 4463 645504334 645504430 3.600000e-31 147
37 TraesCS2B01G466600 chr6D 88.136 118 6 7 4350 4466 384237164 384237274 2.800000e-27 134


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G466600 chr2B 662375739 662380204 4465 False 3746.5 6940 100.000 1 4466 2 chr2B.!!$F3 4465
1 TraesCS2B01G466600 chr2B 662586606 662587342 736 False 514.0 514 79.524 991 1740 1 chr2B.!!$F2 749
2 TraesCS2B01G466600 chr2B 662650962 662652581 1619 False 327.5 477 85.867 363 2444 2 chr2B.!!$F4 2081
3 TraesCS2B01G466600 chr2A 695152879 695156461 3582 False 5044.0 5044 92.210 1 3571 1 chr2A.!!$F1 3570
4 TraesCS2B01G466600 chr2A 695295408 695296874 1466 False 482.5 486 84.617 1185 2440 2 chr2A.!!$F4 1255
5 TraesCS2B01G466600 chr2A 695161524 695162265 741 False 453.0 453 78.312 991 1740 1 chr2A.!!$F2 749
6 TraesCS2B01G466600 chr2D 555613217 555616746 3529 False 2599.5 3583 92.538 1 3571 2 chr2D.!!$F4 3570
7 TraesCS2B01G466600 chr2D 555852795 555853527 732 False 510.0 510 79.388 991 1740 1 chr2D.!!$F2 749

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
687 728 0.105246 TTGGGTGAGGGTTTTGCCAT 60.105 50.000 0.00 0.0 39.65 4.40 F
1095 1153 1.077858 TTGCGCTGGCCATATGTGA 60.078 52.632 5.51 0.0 38.85 3.58 F
2409 2755 2.036733 TCCAGGGAAACAGTGTCTAACG 59.963 50.000 0.00 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2409 2755 0.038801 GCTGGAGCTTTTGTTCTGCC 60.039 55.0 0.0 0.0 38.21 4.85 R
2613 2959 0.315251 GCAAAGAGGTCCAAAGGTGC 59.685 55.0 0.0 0.0 0.00 5.01 R
3542 3901 0.100682 TAGCGTCAGATCCAGCGTTC 59.899 55.0 0.0 0.0 34.34 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 1.621814 CGACTTTAGGTCCACCAAGGA 59.378 52.381 0.00 0.00 46.75 3.36
81 84 7.932120 AGCACAGACAATATATTTCGTAGTC 57.068 36.000 0.00 0.35 0.00 2.59
100 103 8.717821 TCGTAGTCTTGTCAAAAAGAATATTGG 58.282 33.333 0.00 0.00 38.55 3.16
101 104 7.481798 CGTAGTCTTGTCAAAAAGAATATTGGC 59.518 37.037 0.00 0.00 38.55 4.52
102 105 7.288810 AGTCTTGTCAAAAAGAATATTGGCA 57.711 32.000 0.00 0.00 39.22 4.92
182 202 1.679898 GAACTCCACCCCACTCCAG 59.320 63.158 0.00 0.00 0.00 3.86
192 212 2.370445 CCACTCCAGGATTCCGGCT 61.370 63.158 0.00 0.00 0.00 5.52
219 239 1.749638 AACTCCGATCGAGCTCCGT 60.750 57.895 18.66 0.00 43.01 4.69
226 246 1.739338 GATCGAGCTCCGTCCATGGT 61.739 60.000 12.58 0.00 39.75 3.55
487 514 2.123812 GAGGACGAGGGGGACGAT 60.124 66.667 0.00 0.00 34.70 3.73
492 519 2.029666 CGAGGGGGACGATGATGC 59.970 66.667 0.00 0.00 0.00 3.91
547 574 6.817140 ACGAGGTCTGGTAACTAATCAAATTC 59.183 38.462 0.00 0.00 37.61 2.17
583 610 2.167662 TCTCGTAGCATTGGTCTGTGA 58.832 47.619 0.00 0.00 0.00 3.58
589 616 2.708051 AGCATTGGTCTGTGATGTGAG 58.292 47.619 0.00 0.00 0.00 3.51
614 642 4.511617 TTGCAATGCAATTTCTCCGTTA 57.488 36.364 17.55 0.00 43.99 3.18
687 728 0.105246 TTGGGTGAGGGTTTTGCCAT 60.105 50.000 0.00 0.00 39.65 4.40
692 733 2.092323 GTGAGGGTTTTGCCATAGACC 58.908 52.381 0.00 0.00 39.65 3.85
748 805 6.163135 ACAGTAGTATATTGCTGGTCCTTC 57.837 41.667 15.83 0.00 30.50 3.46
751 808 2.700897 AGTATATTGCTGGTCCTTCGCT 59.299 45.455 0.00 0.00 0.00 4.93
765 822 3.684788 TCCTTCGCTCTATTTCACTTTGC 59.315 43.478 0.00 0.00 0.00 3.68
861 918 2.293170 GCATACAAGGGAAGGAAGCTC 58.707 52.381 0.00 0.00 0.00 4.09
869 927 2.979678 AGGGAAGGAAGCTCTGTTTACA 59.020 45.455 0.00 0.00 0.00 2.41
895 953 6.567701 CGTGTATTGAATTTAGGCTGTGTTGT 60.568 38.462 0.00 0.00 0.00 3.32
918 976 7.223584 TGTTTCTGAATTTATGAGTGTCTCCA 58.776 34.615 0.00 0.00 0.00 3.86
982 1040 6.211515 GTCATTTGTTTGCTCACTTGATCTT 58.788 36.000 0.00 0.00 0.00 2.40
1030 1088 3.452627 GGAAGCGATATATGGGGATGACT 59.547 47.826 0.00 0.00 0.00 3.41
1080 1138 5.654497 CTCCATTATTTCCAGGTTTCTTGC 58.346 41.667 0.00 0.00 0.00 4.01
1095 1153 1.077858 TTGCGCTGGCCATATGTGA 60.078 52.632 5.51 0.00 38.85 3.58
1264 1330 5.734720 TCAGCTAGTGGAAATCGAAAAGAT 58.265 37.500 0.00 0.00 42.43 2.40
1265 1331 5.582269 TCAGCTAGTGGAAATCGAAAAGATG 59.418 40.000 0.00 0.00 40.02 2.90
1266 1332 4.878397 AGCTAGTGGAAATCGAAAAGATGG 59.122 41.667 0.00 0.00 40.02 3.51
1312 1387 5.879223 AGAAGAACATGATGATGAACCAGAC 59.121 40.000 0.00 0.00 33.36 3.51
1326 1401 6.037786 TGAACCAGACGAATTCTCTTACAT 57.962 37.500 3.52 0.00 28.96 2.29
1805 1909 7.069331 AGGTTATTCCATTTTAATCGATTGGCA 59.931 33.333 20.87 4.37 39.02 4.92
1961 2306 8.843885 AACTAGTGAACCTGTTATTTACTTCC 57.156 34.615 0.00 0.00 0.00 3.46
2409 2755 2.036733 TCCAGGGAAACAGTGTCTAACG 59.963 50.000 0.00 0.00 0.00 3.18
2611 2957 4.640771 TTAAGATCTTTGGACAGTGCCT 57.359 40.909 14.36 0.00 0.00 4.75
2613 2959 2.787994 AGATCTTTGGACAGTGCCTTG 58.212 47.619 0.00 0.00 0.00 3.61
2674 3033 4.206375 TGTTGACATGTCCATCTGTTGTT 58.794 39.130 22.85 0.00 0.00 2.83
2675 3034 4.036616 TGTTGACATGTCCATCTGTTGTTG 59.963 41.667 22.85 0.00 0.00 3.33
2676 3035 2.553602 TGACATGTCCATCTGTTGTTGC 59.446 45.455 22.85 0.00 0.00 4.17
2678 3037 2.165167 CATGTCCATCTGTTGTTGCCT 58.835 47.619 0.00 0.00 0.00 4.75
2737 3096 4.462483 GTGGGAGATGGTAAAAGAAATGCA 59.538 41.667 0.00 0.00 0.00 3.96
2870 3229 4.269523 TTCCGCTGTGGCAAGGCT 62.270 61.111 1.39 0.00 38.60 4.58
2879 3238 1.025041 GTGGCAAGGCTATAACTGGC 58.975 55.000 2.98 2.98 34.06 4.85
2898 3257 5.221803 ACTGGCTATGATCATTTCAGGTAGG 60.222 44.000 23.90 10.09 37.89 3.18
2901 3260 4.505566 GCTATGATCATTTCAGGTAGGCCA 60.506 45.833 14.65 0.00 37.89 5.36
2920 3279 6.230472 AGGCCATTCAAAATTCAAAGTTACC 58.770 36.000 5.01 0.00 0.00 2.85
2927 3286 6.811954 TCAAAATTCAAAGTTACCAGGTTCC 58.188 36.000 0.00 0.00 0.00 3.62
2935 3294 7.348033 TCAAAGTTACCAGGTTCCTTAAAAGA 58.652 34.615 0.00 0.00 0.00 2.52
3030 3389 3.775316 CCATCCACTGTAGGAGTAAAGGT 59.225 47.826 5.47 0.00 41.90 3.50
3108 3467 5.010012 GGAAGTGCTGAAAAATGAAAGAGGA 59.990 40.000 0.00 0.00 0.00 3.71
3120 3479 2.289631 TGAAAGAGGAATGCGAGCTCAA 60.290 45.455 15.40 0.88 0.00 3.02
3212 3571 6.712547 ACTAAACCTGTCTTTCAAATCTGGAG 59.287 38.462 5.73 0.00 0.00 3.86
3284 3643 7.371615 CACTGATGATCAATTTAAACATCGTCG 59.628 37.037 0.00 12.96 39.77 5.12
3293 3652 8.172484 TCAATTTAAACATCGTCGGTTTATCTG 58.828 33.333 7.39 6.21 39.62 2.90
3300 3659 4.563337 TCGTCGGTTTATCTGTCTATGG 57.437 45.455 0.00 0.00 0.00 2.74
3385 3744 2.472909 GCCAGCTATTCCACACGGC 61.473 63.158 0.00 0.00 0.00 5.68
3396 3755 4.666253 ACACGGCCCAAGCAGCAT 62.666 61.111 0.00 0.00 42.56 3.79
3435 3794 1.078143 GAGGATGCGAGGCAAAGGT 60.078 57.895 0.00 0.00 43.62 3.50
3464 3823 1.918262 GGATGATCAGGGGGATGCATA 59.082 52.381 0.00 0.00 36.00 3.14
3485 3844 6.306596 GCATAAAGCTGAAAAGTTTGTAGAGC 59.693 38.462 0.00 0.00 41.15 4.09
3491 3850 5.403897 TGAAAAGTTTGTAGAGCTGTTCG 57.596 39.130 0.00 0.00 36.03 3.95
3499 3858 2.492088 TGTAGAGCTGTTCGTGTGCTAT 59.508 45.455 0.00 0.00 37.16 2.97
3519 3878 1.191096 CGTTGTCACAGTTTTGCAGC 58.809 50.000 0.00 0.00 0.00 5.25
3520 3879 1.559831 GTTGTCACAGTTTTGCAGCC 58.440 50.000 0.00 0.00 0.00 4.85
3521 3880 0.100325 TTGTCACAGTTTTGCAGCCG 59.900 50.000 0.00 0.00 0.00 5.52
3522 3881 0.746204 TGTCACAGTTTTGCAGCCGA 60.746 50.000 0.00 0.00 0.00 5.54
3523 3882 0.040958 GTCACAGTTTTGCAGCCGAG 60.041 55.000 0.00 0.00 0.00 4.63
3542 3901 1.795962 GATTTTGCCGTTGCCGTCG 60.796 57.895 0.00 0.00 36.33 5.12
3559 3918 2.508891 CGAACGCTGGATCTGACGC 61.509 63.158 0.00 0.00 0.00 5.19
3585 3944 7.700322 ATGTGTAGCTTGTAAACTATCGATG 57.300 36.000 8.54 0.52 0.00 3.84
3586 3945 6.040247 TGTGTAGCTTGTAAACTATCGATGG 58.960 40.000 8.54 7.88 0.00 3.51
3587 3946 5.462398 GTGTAGCTTGTAAACTATCGATGGG 59.538 44.000 13.75 6.22 0.00 4.00
3588 3947 5.361571 TGTAGCTTGTAAACTATCGATGGGA 59.638 40.000 13.75 0.00 0.00 4.37
3589 3948 5.353394 AGCTTGTAAACTATCGATGGGAA 57.647 39.130 13.75 0.00 0.00 3.97
3590 3949 5.360591 AGCTTGTAAACTATCGATGGGAAG 58.639 41.667 13.75 2.48 0.00 3.46
3591 3950 4.024809 GCTTGTAAACTATCGATGGGAAGC 60.025 45.833 13.75 12.90 0.00 3.86
3592 3951 3.713288 TGTAAACTATCGATGGGAAGCG 58.287 45.455 13.75 0.00 0.00 4.68
3593 3952 2.981859 AAACTATCGATGGGAAGCGT 57.018 45.000 13.75 0.00 0.00 5.07
3594 3953 4.338964 TGTAAACTATCGATGGGAAGCGTA 59.661 41.667 13.75 0.00 0.00 4.42
3595 3954 4.602340 AAACTATCGATGGGAAGCGTAT 57.398 40.909 13.75 0.00 0.00 3.06
3596 3955 3.851976 ACTATCGATGGGAAGCGTATC 57.148 47.619 13.75 0.00 0.00 2.24
3597 3956 3.154710 ACTATCGATGGGAAGCGTATCA 58.845 45.455 13.75 0.00 0.00 2.15
3598 3957 2.440539 ATCGATGGGAAGCGTATCAC 57.559 50.000 0.00 0.00 0.00 3.06
3599 3958 0.387929 TCGATGGGAAGCGTATCACC 59.612 55.000 0.00 0.00 0.00 4.02
3600 3959 0.104120 CGATGGGAAGCGTATCACCA 59.896 55.000 0.00 0.00 35.39 4.17
3601 3960 1.583054 GATGGGAAGCGTATCACCAC 58.417 55.000 0.00 0.00 33.42 4.16
3602 3961 0.180406 ATGGGAAGCGTATCACCACC 59.820 55.000 0.00 0.00 33.42 4.61
3603 3962 1.153229 GGGAAGCGTATCACCACCC 60.153 63.158 0.00 0.00 0.00 4.61
3604 3963 1.520787 GGAAGCGTATCACCACCCG 60.521 63.158 0.00 0.00 0.00 5.28
3605 3964 1.217244 GAAGCGTATCACCACCCGT 59.783 57.895 0.00 0.00 0.00 5.28
3606 3965 0.457035 GAAGCGTATCACCACCCGTA 59.543 55.000 0.00 0.00 0.00 4.02
3607 3966 0.458669 AAGCGTATCACCACCCGTAG 59.541 55.000 0.00 0.00 0.00 3.51
3621 3980 3.762247 GTAGGTGGCCGCGTGGTA 61.762 66.667 21.40 3.19 37.67 3.25
3622 3981 2.760799 TAGGTGGCCGCGTGGTAT 60.761 61.111 21.40 0.95 37.67 2.73
3623 3982 1.455402 TAGGTGGCCGCGTGGTATA 60.455 57.895 21.40 0.00 37.67 1.47
3624 3983 0.828762 TAGGTGGCCGCGTGGTATAT 60.829 55.000 21.40 2.06 37.67 0.86
3625 3984 0.828762 AGGTGGCCGCGTGGTATATA 60.829 55.000 17.91 0.00 37.67 0.86
3626 3985 0.248289 GGTGGCCGCGTGGTATATAT 59.752 55.000 17.91 0.00 37.67 0.86
3627 3986 1.338389 GGTGGCCGCGTGGTATATATT 60.338 52.381 17.91 0.00 37.67 1.28
3628 3987 1.730064 GTGGCCGCGTGGTATATATTG 59.270 52.381 17.91 0.00 37.67 1.90
3629 3988 1.619332 TGGCCGCGTGGTATATATTGA 59.381 47.619 17.91 0.00 37.67 2.57
3630 3989 2.235155 TGGCCGCGTGGTATATATTGAT 59.765 45.455 17.91 0.00 37.67 2.57
3631 3990 3.267483 GGCCGCGTGGTATATATTGATT 58.733 45.455 17.91 0.00 37.67 2.57
3632 3991 3.063452 GGCCGCGTGGTATATATTGATTG 59.937 47.826 17.91 0.00 37.67 2.67
3633 3992 3.930229 GCCGCGTGGTATATATTGATTGA 59.070 43.478 17.91 0.00 37.67 2.57
3634 3993 4.032900 GCCGCGTGGTATATATTGATTGAG 59.967 45.833 17.91 0.00 37.67 3.02
3635 3994 4.566759 CCGCGTGGTATATATTGATTGAGG 59.433 45.833 6.91 0.00 0.00 3.86
3636 3995 4.032900 CGCGTGGTATATATTGATTGAGGC 59.967 45.833 0.00 0.00 0.00 4.70
3637 3996 4.935205 GCGTGGTATATATTGATTGAGGCA 59.065 41.667 0.00 0.00 0.00 4.75
3638 3997 5.411361 GCGTGGTATATATTGATTGAGGCAA 59.589 40.000 0.00 0.00 0.00 4.52
3639 3998 6.620733 GCGTGGTATATATTGATTGAGGCAAC 60.621 42.308 0.00 0.00 0.00 4.17
3640 3999 6.426633 CGTGGTATATATTGATTGAGGCAACA 59.573 38.462 0.00 0.00 41.41 3.33
3641 4000 7.041440 CGTGGTATATATTGATTGAGGCAACAA 60.041 37.037 0.00 0.20 41.41 2.83
3642 4001 8.292448 GTGGTATATATTGATTGAGGCAACAAG 58.708 37.037 0.00 0.00 41.41 3.16
3643 4002 7.040478 TGGTATATATTGATTGAGGCAACAAGC 60.040 37.037 5.91 5.91 44.65 4.01
3663 4022 4.265282 GCCGTGGCGTACAAGTTA 57.735 55.556 0.00 0.00 0.00 2.24
3664 4023 2.075761 GCCGTGGCGTACAAGTTAG 58.924 57.895 0.00 0.00 0.00 2.34
3665 4024 1.356527 GCCGTGGCGTACAAGTTAGG 61.357 60.000 0.00 0.00 0.00 2.69
3666 4025 0.244450 CCGTGGCGTACAAGTTAGGA 59.756 55.000 0.00 0.00 0.00 2.94
3667 4026 1.337074 CCGTGGCGTACAAGTTAGGAA 60.337 52.381 0.00 0.00 0.00 3.36
3668 4027 1.723003 CGTGGCGTACAAGTTAGGAAC 59.277 52.381 0.00 0.00 0.00 3.62
3669 4028 2.608752 CGTGGCGTACAAGTTAGGAACT 60.609 50.000 0.00 0.00 45.46 3.01
3670 4029 3.366273 CGTGGCGTACAAGTTAGGAACTA 60.366 47.826 0.00 0.00 41.91 2.24
3671 4030 4.676196 CGTGGCGTACAAGTTAGGAACTAT 60.676 45.833 0.00 0.00 42.38 2.12
3672 4031 4.802563 GTGGCGTACAAGTTAGGAACTATC 59.197 45.833 0.00 0.00 42.38 2.08
3673 4032 4.040376 GGCGTACAAGTTAGGAACTATCG 58.960 47.826 0.00 0.00 42.38 2.92
3674 4033 3.485013 GCGTACAAGTTAGGAACTATCGC 59.515 47.826 11.39 11.39 42.38 4.58
3675 4034 4.665212 CGTACAAGTTAGGAACTATCGCA 58.335 43.478 0.00 0.00 42.38 5.10
3676 4035 5.279384 CGTACAAGTTAGGAACTATCGCAT 58.721 41.667 0.00 0.00 42.38 4.73
3677 4036 5.173312 CGTACAAGTTAGGAACTATCGCATG 59.827 44.000 0.00 0.00 42.38 4.06
3678 4037 4.442706 ACAAGTTAGGAACTATCGCATGG 58.557 43.478 0.00 0.00 42.38 3.66
3679 4038 4.161565 ACAAGTTAGGAACTATCGCATGGA 59.838 41.667 0.00 0.00 42.38 3.41
3680 4039 5.163301 ACAAGTTAGGAACTATCGCATGGAT 60.163 40.000 0.00 0.00 42.38 3.41
3681 4040 4.887748 AGTTAGGAACTATCGCATGGATG 58.112 43.478 0.00 0.00 42.38 3.51
3682 4041 2.175878 AGGAACTATCGCATGGATGC 57.824 50.000 1.23 1.23 44.55 3.91
3697 4056 2.213499 GGATGCGTTCCAGATTACAGG 58.787 52.381 0.77 0.00 44.74 4.00
3698 4057 2.158957 GGATGCGTTCCAGATTACAGGA 60.159 50.000 0.77 0.00 44.74 3.86
3699 4058 2.672961 TGCGTTCCAGATTACAGGAG 57.327 50.000 0.00 0.00 33.40 3.69
3700 4059 2.176045 TGCGTTCCAGATTACAGGAGA 58.824 47.619 0.00 0.00 33.40 3.71
3701 4060 2.094182 TGCGTTCCAGATTACAGGAGAC 60.094 50.000 0.00 0.00 33.40 3.36
3702 4061 2.738964 GCGTTCCAGATTACAGGAGACC 60.739 54.545 0.00 0.00 33.40 3.85
3703 4062 2.479730 CGTTCCAGATTACAGGAGACCG 60.480 54.545 0.00 0.00 33.40 4.79
3704 4063 2.758979 GTTCCAGATTACAGGAGACCGA 59.241 50.000 0.00 0.00 33.40 4.69
3705 4064 2.656002 TCCAGATTACAGGAGACCGAG 58.344 52.381 0.00 0.00 0.00 4.63
3706 4065 2.241430 TCCAGATTACAGGAGACCGAGA 59.759 50.000 0.00 0.00 0.00 4.04
3707 4066 3.024547 CCAGATTACAGGAGACCGAGAA 58.975 50.000 0.00 0.00 0.00 2.87
3708 4067 3.067461 CCAGATTACAGGAGACCGAGAAG 59.933 52.174 0.00 0.00 0.00 2.85
3710 4069 2.893215 TTACAGGAGACCGAGAAGGA 57.107 50.000 0.00 0.00 45.00 3.36
3711 4070 2.421751 TACAGGAGACCGAGAAGGAG 57.578 55.000 0.00 0.00 45.00 3.69
3712 4071 0.699399 ACAGGAGACCGAGAAGGAGA 59.301 55.000 0.00 0.00 45.00 3.71
3713 4072 1.075698 ACAGGAGACCGAGAAGGAGAA 59.924 52.381 0.00 0.00 45.00 2.87
3714 4073 1.748493 CAGGAGACCGAGAAGGAGAAG 59.252 57.143 0.00 0.00 45.00 2.85
3715 4074 1.356398 AGGAGACCGAGAAGGAGAAGT 59.644 52.381 0.00 0.00 45.00 3.01
3716 4075 2.172679 GGAGACCGAGAAGGAGAAGTT 58.827 52.381 0.00 0.00 45.00 2.66
3717 4076 3.010361 AGGAGACCGAGAAGGAGAAGTTA 59.990 47.826 0.00 0.00 45.00 2.24
3718 4077 3.129113 GGAGACCGAGAAGGAGAAGTTAC 59.871 52.174 0.00 0.00 45.00 2.50
3719 4078 3.757493 GAGACCGAGAAGGAGAAGTTACA 59.243 47.826 0.00 0.00 45.00 2.41
3720 4079 3.759618 AGACCGAGAAGGAGAAGTTACAG 59.240 47.826 0.00 0.00 45.00 2.74
3721 4080 3.498334 ACCGAGAAGGAGAAGTTACAGT 58.502 45.455 0.00 0.00 45.00 3.55
3722 4081 3.506844 ACCGAGAAGGAGAAGTTACAGTC 59.493 47.826 0.00 0.00 45.00 3.51
3723 4082 3.759618 CCGAGAAGGAGAAGTTACAGTCT 59.240 47.826 0.00 0.00 45.00 3.24
3724 4083 4.218852 CCGAGAAGGAGAAGTTACAGTCTT 59.781 45.833 0.00 0.00 45.00 3.01
3725 4084 5.415077 CCGAGAAGGAGAAGTTACAGTCTTA 59.585 44.000 0.00 0.00 45.00 2.10
3726 4085 6.316319 CGAGAAGGAGAAGTTACAGTCTTAC 58.684 44.000 0.00 0.00 0.00 2.34
3727 4086 6.072618 CGAGAAGGAGAAGTTACAGTCTTACA 60.073 42.308 0.00 0.00 0.00 2.41
3728 4087 7.222000 AGAAGGAGAAGTTACAGTCTTACAG 57.778 40.000 0.00 0.00 0.00 2.74
3729 4088 7.005296 AGAAGGAGAAGTTACAGTCTTACAGA 58.995 38.462 0.00 0.00 0.00 3.41
3730 4089 7.506261 AGAAGGAGAAGTTACAGTCTTACAGAA 59.494 37.037 0.00 0.00 0.00 3.02
3731 4090 7.222000 AGGAGAAGTTACAGTCTTACAGAAG 57.778 40.000 0.00 0.00 0.00 2.85
3732 4091 6.209788 AGGAGAAGTTACAGTCTTACAGAAGG 59.790 42.308 0.00 0.00 33.09 3.46
3733 4092 6.208994 GGAGAAGTTACAGTCTTACAGAAGGA 59.791 42.308 0.00 0.00 33.09 3.36
3734 4093 7.255871 GGAGAAGTTACAGTCTTACAGAAGGAA 60.256 40.741 0.00 0.00 33.09 3.36
3735 4094 7.662897 AGAAGTTACAGTCTTACAGAAGGAAG 58.337 38.462 0.00 0.00 33.09 3.46
3736 4095 6.347859 AGTTACAGTCTTACAGAAGGAAGG 57.652 41.667 0.00 0.00 33.09 3.46
3737 4096 6.075984 AGTTACAGTCTTACAGAAGGAAGGA 58.924 40.000 0.00 0.00 33.09 3.36
3738 4097 6.726764 AGTTACAGTCTTACAGAAGGAAGGAT 59.273 38.462 0.00 0.00 33.09 3.24
3739 4098 7.894364 AGTTACAGTCTTACAGAAGGAAGGATA 59.106 37.037 0.00 0.00 33.09 2.59
3740 4099 6.783708 ACAGTCTTACAGAAGGAAGGATAG 57.216 41.667 0.00 0.00 33.09 2.08
3741 4100 6.494952 ACAGTCTTACAGAAGGAAGGATAGA 58.505 40.000 0.00 0.00 33.09 1.98
3742 4101 6.954684 ACAGTCTTACAGAAGGAAGGATAGAA 59.045 38.462 0.00 0.00 33.09 2.10
3743 4102 7.123547 ACAGTCTTACAGAAGGAAGGATAGAAG 59.876 40.741 0.00 0.00 33.09 2.85
3744 4103 7.123547 CAGTCTTACAGAAGGAAGGATAGAAGT 59.876 40.741 0.00 0.00 33.09 3.01
3745 4104 7.676468 AGTCTTACAGAAGGAAGGATAGAAGTT 59.324 37.037 0.00 0.00 33.09 2.66
3746 4105 8.315482 GTCTTACAGAAGGAAGGATAGAAGTTT 58.685 37.037 0.00 0.00 33.09 2.66
3747 4106 8.314751 TCTTACAGAAGGAAGGATAGAAGTTTG 58.685 37.037 0.00 0.00 33.09 2.93
3748 4107 6.688073 ACAGAAGGAAGGATAGAAGTTTGA 57.312 37.500 0.00 0.00 0.00 2.69
3749 4108 7.079451 ACAGAAGGAAGGATAGAAGTTTGAA 57.921 36.000 0.00 0.00 0.00 2.69
3750 4109 6.937465 ACAGAAGGAAGGATAGAAGTTTGAAC 59.063 38.462 0.00 0.00 0.00 3.18
3751 4110 6.936900 CAGAAGGAAGGATAGAAGTTTGAACA 59.063 38.462 0.00 0.00 0.00 3.18
3752 4111 7.609532 CAGAAGGAAGGATAGAAGTTTGAACAT 59.390 37.037 0.00 0.00 0.00 2.71
3753 4112 7.609532 AGAAGGAAGGATAGAAGTTTGAACATG 59.390 37.037 0.00 0.00 0.00 3.21
3754 4113 7.020827 AGGAAGGATAGAAGTTTGAACATGA 57.979 36.000 0.00 0.00 0.00 3.07
3755 4114 7.461749 AGGAAGGATAGAAGTTTGAACATGAA 58.538 34.615 0.00 0.00 0.00 2.57
3756 4115 8.112183 AGGAAGGATAGAAGTTTGAACATGAAT 58.888 33.333 0.00 0.00 0.00 2.57
3757 4116 9.396022 GGAAGGATAGAAGTTTGAACATGAATA 57.604 33.333 0.00 0.00 0.00 1.75
4192 4551 8.990163 TGAAACTTTTCCTAGGTTAAGATTGT 57.010 30.769 23.48 11.02 36.36 2.71
4222 4581 8.868522 AAAATCATCTAACCTTCTCATTGTGA 57.131 30.769 0.00 0.00 0.00 3.58
4223 4582 8.503458 AAATCATCTAACCTTCTCATTGTGAG 57.497 34.615 0.55 0.55 45.59 3.51
4249 4608 6.013842 GTTTTGTAAAACCATCAGCTAGCT 57.986 37.500 12.68 12.68 41.77 3.32
4250 4609 5.627499 TTTGTAAAACCATCAGCTAGCTG 57.373 39.130 34.48 34.48 44.86 4.24
4251 4610 6.293955 GTTTTGTAAAACCATCAGCTAGCTGA 60.294 38.462 41.30 41.30 46.60 4.26
4258 4617 2.831859 TCAGCTAGCTGATCCCCAG 58.168 57.895 37.64 14.97 46.80 4.45
4259 4618 0.031716 TCAGCTAGCTGATCCCCAGT 60.032 55.000 37.64 1.26 46.80 4.00
4260 4619 0.835941 CAGCTAGCTGATCCCCAGTT 59.164 55.000 36.47 0.00 46.30 3.16
4261 4620 0.835941 AGCTAGCTGATCCCCAGTTG 59.164 55.000 18.57 0.00 44.71 3.16
4262 4621 0.179034 GCTAGCTGATCCCCAGTTGG 60.179 60.000 7.70 0.00 44.71 3.77
4263 4622 1.500474 CTAGCTGATCCCCAGTTGGA 58.500 55.000 0.00 0.00 44.71 3.53
4264 4623 1.839994 CTAGCTGATCCCCAGTTGGAA 59.160 52.381 0.00 0.00 44.71 3.53
4265 4624 1.075601 AGCTGATCCCCAGTTGGAAA 58.924 50.000 0.00 0.00 44.71 3.13
4266 4625 1.005215 AGCTGATCCCCAGTTGGAAAG 59.995 52.381 0.00 0.00 44.71 2.62
4267 4626 1.004745 GCTGATCCCCAGTTGGAAAGA 59.995 52.381 0.00 0.00 44.71 2.52
4268 4627 2.555227 GCTGATCCCCAGTTGGAAAGAA 60.555 50.000 0.00 0.00 44.71 2.52
4269 4628 3.084786 CTGATCCCCAGTTGGAAAGAAC 58.915 50.000 0.00 0.00 38.10 3.01
4270 4629 2.716424 TGATCCCCAGTTGGAAAGAACT 59.284 45.455 0.00 0.00 38.10 3.01
4271 4630 3.140144 TGATCCCCAGTTGGAAAGAACTT 59.860 43.478 0.00 0.00 38.10 2.66
4272 4631 4.352595 TGATCCCCAGTTGGAAAGAACTTA 59.647 41.667 0.00 0.00 38.10 2.24
4273 4632 4.799715 TCCCCAGTTGGAAAGAACTTAA 57.200 40.909 0.00 0.00 33.75 1.85
4274 4633 5.333566 TCCCCAGTTGGAAAGAACTTAAT 57.666 39.130 0.00 0.00 33.75 1.40
4275 4634 6.457159 TCCCCAGTTGGAAAGAACTTAATA 57.543 37.500 0.00 0.00 33.75 0.98
4276 4635 7.039722 TCCCCAGTTGGAAAGAACTTAATAT 57.960 36.000 0.00 0.00 33.75 1.28
4277 4636 7.116736 TCCCCAGTTGGAAAGAACTTAATATC 58.883 38.462 0.00 0.00 33.75 1.63
4278 4637 6.889722 CCCCAGTTGGAAAGAACTTAATATCA 59.110 38.462 0.00 0.00 33.75 2.15
4279 4638 7.396055 CCCCAGTTGGAAAGAACTTAATATCAA 59.604 37.037 0.00 0.00 33.75 2.57
4280 4639 8.462016 CCCAGTTGGAAAGAACTTAATATCAAG 58.538 37.037 0.00 0.00 33.75 3.02
4281 4640 7.970614 CCAGTTGGAAAGAACTTAATATCAAGC 59.029 37.037 0.00 0.00 33.75 4.01
4282 4641 8.514594 CAGTTGGAAAGAACTTAATATCAAGCA 58.485 33.333 0.00 0.00 33.75 3.91
4283 4642 9.077885 AGTTGGAAAGAACTTAATATCAAGCAA 57.922 29.630 0.00 0.00 31.92 3.91
4284 4643 9.129209 GTTGGAAAGAACTTAATATCAAGCAAC 57.871 33.333 0.00 0.00 0.00 4.17
4285 4644 8.635765 TGGAAAGAACTTAATATCAAGCAACT 57.364 30.769 0.00 0.00 0.00 3.16
4286 4645 9.077885 TGGAAAGAACTTAATATCAAGCAACTT 57.922 29.630 0.00 0.00 0.00 2.66
4287 4646 9.346725 GGAAAGAACTTAATATCAAGCAACTTG 57.653 33.333 0.81 0.81 42.25 3.16
4299 4658 6.604735 TCAAGCAACTTGAGTTACTCTTTC 57.395 37.500 13.86 0.00 44.27 2.62
4300 4659 6.349300 TCAAGCAACTTGAGTTACTCTTTCT 58.651 36.000 13.86 0.00 44.27 2.52
4301 4660 6.480320 TCAAGCAACTTGAGTTACTCTTTCTC 59.520 38.462 13.86 0.00 44.27 2.87
4302 4661 6.168270 AGCAACTTGAGTTACTCTTTCTCT 57.832 37.500 13.86 1.63 36.32 3.10
4303 4662 5.988561 AGCAACTTGAGTTACTCTTTCTCTG 59.011 40.000 13.86 5.00 36.32 3.35
4304 4663 5.986135 GCAACTTGAGTTACTCTTTCTCTGA 59.014 40.000 13.86 0.00 36.32 3.27
4305 4664 6.074034 GCAACTTGAGTTACTCTTTCTCTGAC 60.074 42.308 13.86 0.00 36.32 3.51
4306 4665 6.716934 ACTTGAGTTACTCTTTCTCTGACA 57.283 37.500 13.86 0.00 0.00 3.58
4307 4666 7.113658 ACTTGAGTTACTCTTTCTCTGACAA 57.886 36.000 13.86 0.00 0.00 3.18
4308 4667 7.556844 ACTTGAGTTACTCTTTCTCTGACAAA 58.443 34.615 13.86 0.00 0.00 2.83
4309 4668 8.041323 ACTTGAGTTACTCTTTCTCTGACAAAA 58.959 33.333 13.86 0.00 0.00 2.44
4310 4669 8.964476 TTGAGTTACTCTTTCTCTGACAAAAT 57.036 30.769 13.86 0.00 0.00 1.82
4311 4670 8.370493 TGAGTTACTCTTTCTCTGACAAAATG 57.630 34.615 13.86 0.00 0.00 2.32
4312 4671 8.204160 TGAGTTACTCTTTCTCTGACAAAATGA 58.796 33.333 13.86 0.00 0.00 2.57
4313 4672 8.964476 AGTTACTCTTTCTCTGACAAAATGAA 57.036 30.769 0.00 0.00 0.00 2.57
4314 4673 9.396022 AGTTACTCTTTCTCTGACAAAATGAAA 57.604 29.630 0.00 0.00 0.00 2.69
4318 4677 8.906867 ACTCTTTCTCTGACAAAATGAAAATCA 58.093 29.630 0.00 0.00 0.00 2.57
4319 4678 9.740239 CTCTTTCTCTGACAAAATGAAAATCAA 57.260 29.630 0.00 0.00 0.00 2.57
4320 4679 9.520204 TCTTTCTCTGACAAAATGAAAATCAAC 57.480 29.630 0.00 0.00 0.00 3.18
4321 4680 9.525409 CTTTCTCTGACAAAATGAAAATCAACT 57.475 29.630 0.00 0.00 0.00 3.16
4322 4681 9.874205 TTTCTCTGACAAAATGAAAATCAACTT 57.126 25.926 0.00 0.00 0.00 2.66
4323 4682 9.520204 TTCTCTGACAAAATGAAAATCAACTTC 57.480 29.630 0.00 0.00 0.00 3.01
4324 4683 8.685427 TCTCTGACAAAATGAAAATCAACTTCA 58.315 29.630 0.00 0.00 37.22 3.02
4325 4684 9.304731 CTCTGACAAAATGAAAATCAACTTCAA 57.695 29.630 0.00 0.00 36.43 2.69
4326 4685 9.820725 TCTGACAAAATGAAAATCAACTTCAAT 57.179 25.926 0.00 0.00 36.43 2.57
4327 4686 9.858247 CTGACAAAATGAAAATCAACTTCAATG 57.142 29.630 0.00 0.00 36.43 2.82
4328 4687 9.381033 TGACAAAATGAAAATCAACTTCAATGT 57.619 25.926 0.00 0.00 36.43 2.71
4329 4688 9.640974 GACAAAATGAAAATCAACTTCAATGTG 57.359 29.630 6.70 0.13 36.43 3.21
4330 4689 8.124199 ACAAAATGAAAATCAACTTCAATGTGC 58.876 29.630 0.00 0.00 36.43 4.57
4331 4690 8.339714 CAAAATGAAAATCAACTTCAATGTGCT 58.660 29.630 0.00 0.00 36.43 4.40
4332 4691 8.441312 AAATGAAAATCAACTTCAATGTGCTT 57.559 26.923 0.00 0.00 36.43 3.91
4333 4692 6.831727 TGAAAATCAACTTCAATGTGCTTG 57.168 33.333 0.00 0.00 36.09 4.01
4334 4693 5.754406 TGAAAATCAACTTCAATGTGCTTGG 59.246 36.000 0.00 0.00 35.43 3.61
4335 4694 4.942761 AATCAACTTCAATGTGCTTGGT 57.057 36.364 0.00 0.00 35.43 3.67
4336 4695 6.403866 AAATCAACTTCAATGTGCTTGGTA 57.596 33.333 0.00 0.00 35.43 3.25
4337 4696 4.829064 TCAACTTCAATGTGCTTGGTAC 57.171 40.909 0.00 0.00 35.43 3.34
4338 4697 3.249799 TCAACTTCAATGTGCTTGGTACG 59.750 43.478 0.00 0.00 35.43 3.67
4339 4698 2.846193 ACTTCAATGTGCTTGGTACGT 58.154 42.857 0.00 0.00 35.43 3.57
4340 4699 2.548057 ACTTCAATGTGCTTGGTACGTG 59.452 45.455 0.00 0.00 35.43 4.49
4341 4700 0.871722 TCAATGTGCTTGGTACGTGC 59.128 50.000 0.00 0.00 35.43 5.34
4342 4701 0.590682 CAATGTGCTTGGTACGTGCA 59.409 50.000 5.86 0.00 36.89 4.57
4343 4702 1.199789 CAATGTGCTTGGTACGTGCAT 59.800 47.619 5.86 0.00 40.67 3.96
4344 4703 0.804364 ATGTGCTTGGTACGTGCATG 59.196 50.000 5.86 3.82 40.67 4.06
4345 4704 1.233950 TGTGCTTGGTACGTGCATGG 61.234 55.000 11.36 0.00 40.67 3.66
4346 4705 0.953471 GTGCTTGGTACGTGCATGGA 60.953 55.000 11.36 0.00 40.67 3.41
4347 4706 0.250510 TGCTTGGTACGTGCATGGAA 60.251 50.000 11.36 0.00 34.62 3.53
4348 4707 0.447801 GCTTGGTACGTGCATGGAAG 59.552 55.000 11.36 7.71 0.00 3.46
4349 4708 1.943968 GCTTGGTACGTGCATGGAAGA 60.944 52.381 11.36 0.00 0.00 2.87
4350 4709 1.732259 CTTGGTACGTGCATGGAAGAC 59.268 52.381 11.36 2.66 0.00 3.01
4351 4710 0.682292 TGGTACGTGCATGGAAGACA 59.318 50.000 11.36 0.00 0.00 3.41
4352 4711 1.070914 TGGTACGTGCATGGAAGACAA 59.929 47.619 11.36 0.00 0.00 3.18
4353 4712 1.732259 GGTACGTGCATGGAAGACAAG 59.268 52.381 11.36 0.00 0.00 3.16
4354 4713 2.611971 GGTACGTGCATGGAAGACAAGA 60.612 50.000 11.36 0.00 0.00 3.02
4355 4714 2.479566 ACGTGCATGGAAGACAAGAT 57.520 45.000 11.36 0.00 0.00 2.40
4356 4715 2.783135 ACGTGCATGGAAGACAAGATT 58.217 42.857 11.36 0.00 0.00 2.40
4357 4716 2.485426 ACGTGCATGGAAGACAAGATTG 59.515 45.455 11.36 0.00 0.00 2.67
4358 4717 2.159476 CGTGCATGGAAGACAAGATTGG 60.159 50.000 0.00 0.00 0.00 3.16
4359 4718 1.820519 TGCATGGAAGACAAGATTGGC 59.179 47.619 0.00 0.00 36.08 4.52
4369 4728 5.534207 AGACAAGATTGGCTGAGAGATAG 57.466 43.478 0.00 0.00 46.96 2.08
4370 4729 4.344679 AGACAAGATTGGCTGAGAGATAGG 59.655 45.833 0.00 0.00 46.96 2.57
4371 4730 4.036518 ACAAGATTGGCTGAGAGATAGGT 58.963 43.478 0.00 0.00 0.00 3.08
4372 4731 5.211973 ACAAGATTGGCTGAGAGATAGGTA 58.788 41.667 0.00 0.00 0.00 3.08
4373 4732 5.304101 ACAAGATTGGCTGAGAGATAGGTAG 59.696 44.000 0.00 0.00 0.00 3.18
4374 4733 3.831911 AGATTGGCTGAGAGATAGGTAGC 59.168 47.826 0.00 0.00 0.00 3.58
4375 4734 2.755952 TGGCTGAGAGATAGGTAGCA 57.244 50.000 0.00 0.00 36.15 3.49
4376 4735 2.311463 TGGCTGAGAGATAGGTAGCAC 58.689 52.381 0.00 0.00 36.15 4.40
4377 4736 1.616374 GGCTGAGAGATAGGTAGCACC 59.384 57.143 0.00 0.00 38.99 5.01
4378 4737 2.311463 GCTGAGAGATAGGTAGCACCA 58.689 52.381 7.86 0.00 41.95 4.17
4379 4738 2.695666 GCTGAGAGATAGGTAGCACCAA 59.304 50.000 7.86 0.00 41.95 3.67
4380 4739 3.323403 GCTGAGAGATAGGTAGCACCAAT 59.677 47.826 7.86 0.00 41.95 3.16
4381 4740 4.524714 GCTGAGAGATAGGTAGCACCAATA 59.475 45.833 7.86 0.00 41.95 1.90
4382 4741 5.186797 GCTGAGAGATAGGTAGCACCAATAT 59.813 44.000 7.86 0.00 41.95 1.28
4383 4742 6.295575 GCTGAGAGATAGGTAGCACCAATATT 60.296 42.308 7.86 0.00 41.95 1.28
4384 4743 7.093727 GCTGAGAGATAGGTAGCACCAATATTA 60.094 40.741 7.86 0.00 41.95 0.98
4385 4744 8.901472 TGAGAGATAGGTAGCACCAATATTAT 57.099 34.615 7.86 0.00 41.95 1.28
4386 4745 9.326489 TGAGAGATAGGTAGCACCAATATTATT 57.674 33.333 7.86 0.00 41.95 1.40
4387 4746 9.593134 GAGAGATAGGTAGCACCAATATTATTG 57.407 37.037 9.09 9.09 41.95 1.90
4388 4747 9.105844 AGAGATAGGTAGCACCAATATTATTGT 57.894 33.333 13.87 1.89 41.95 2.71
4389 4748 9.726438 GAGATAGGTAGCACCAATATTATTGTT 57.274 33.333 13.87 0.00 41.95 2.83
4390 4749 9.507329 AGATAGGTAGCACCAATATTATTGTTG 57.493 33.333 13.87 11.46 41.95 3.33
4391 4750 6.959639 AGGTAGCACCAATATTATTGTTGG 57.040 37.500 13.73 10.56 46.52 3.77
4392 4751 6.668645 AGGTAGCACCAATATTATTGTTGGA 58.331 36.000 17.07 0.00 44.57 3.53
4393 4752 7.122715 AGGTAGCACCAATATTATTGTTGGAA 58.877 34.615 17.07 1.15 44.57 3.53
4394 4753 7.617723 AGGTAGCACCAATATTATTGTTGGAAA 59.382 33.333 17.07 0.87 44.57 3.13
4395 4754 8.421002 GGTAGCACCAATATTATTGTTGGAAAT 58.579 33.333 17.07 6.92 44.57 2.17
4398 4757 9.985730 AGCACCAATATTATTGTTGGAAATATG 57.014 29.630 17.07 7.78 44.57 1.78
4399 4758 9.762933 GCACCAATATTATTGTTGGAAATATGT 57.237 29.630 17.07 0.75 44.57 2.29
4407 4766 9.799106 ATTATTGTTGGAAATATGTCCTAGAGG 57.201 33.333 13.33 0.00 38.62 3.69
4408 4767 5.036117 TGTTGGAAATATGTCCTAGAGGC 57.964 43.478 13.33 0.00 38.62 4.70
4409 4768 4.473196 TGTTGGAAATATGTCCTAGAGGCA 59.527 41.667 13.33 0.00 38.62 4.75
4410 4769 5.045213 TGTTGGAAATATGTCCTAGAGGCAA 60.045 40.000 13.33 0.00 38.62 4.52
4411 4770 5.912149 TGGAAATATGTCCTAGAGGCAAT 57.088 39.130 13.33 0.00 38.62 3.56
4412 4771 7.147391 TGTTGGAAATATGTCCTAGAGGCAATA 60.147 37.037 13.33 0.00 38.62 1.90
4413 4772 7.387265 TGGAAATATGTCCTAGAGGCAATAA 57.613 36.000 13.33 0.00 38.62 1.40
4414 4773 7.988937 TGGAAATATGTCCTAGAGGCAATAAT 58.011 34.615 13.33 0.00 38.62 1.28
4415 4774 9.111519 TGGAAATATGTCCTAGAGGCAATAATA 57.888 33.333 13.33 0.00 38.62 0.98
4416 4775 9.959721 GGAAATATGTCCTAGAGGCAATAATAA 57.040 33.333 4.48 0.00 34.56 1.40
4421 4780 8.641498 ATGTCCTAGAGGCAATAATAAAATGG 57.359 34.615 0.00 0.00 34.44 3.16
4422 4781 7.582719 TGTCCTAGAGGCAATAATAAAATGGT 58.417 34.615 0.00 0.00 34.44 3.55
4423 4782 8.058847 TGTCCTAGAGGCAATAATAAAATGGTT 58.941 33.333 0.00 0.00 34.44 3.67
4424 4783 9.569122 GTCCTAGAGGCAATAATAAAATGGTTA 57.431 33.333 0.00 0.00 34.44 2.85
4461 4820 9.685276 TCCTTGTTCATGATAATTGTCTATTGT 57.315 29.630 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 80 8.402798 TGCCAATATTCTTTTTGACAAGACTA 57.597 30.769 0.00 0.00 32.28 2.59
166 186 2.125066 ATCCTGGAGTGGGGTGGAGT 62.125 60.000 1.52 0.00 0.00 3.85
192 212 3.060020 GATCGGAGTTGTCGCGGGA 62.060 63.158 6.13 0.00 0.00 5.14
219 239 4.408821 GGACGCAGCCACCATGGA 62.409 66.667 21.47 0.00 40.96 3.41
475 502 2.029666 GCATCATCGTCCCCCTCG 59.970 66.667 0.00 0.00 0.00 4.63
487 514 1.533129 CGGTTGTCTCGTATCGCATCA 60.533 52.381 0.00 0.00 0.00 3.07
492 519 0.866061 CTGCCGGTTGTCTCGTATCG 60.866 60.000 1.90 0.00 0.00 2.92
547 574 1.852895 CGAGATTAGCGAAGTTTCCCG 59.147 52.381 0.00 0.00 0.00 5.14
583 610 3.965379 TTGCATTGCAATTCCTCACAT 57.035 38.095 19.77 0.00 43.99 3.21
610 638 7.919639 GGTCAGCACCATAGTCGTACTAACG 62.920 52.000 0.00 0.00 45.67 3.18
614 642 1.749634 GGTCAGCACCATAGTCGTACT 59.250 52.381 0.00 0.00 43.17 2.73
687 728 3.076621 TCGTAGTTCTCTTTGCGGTCTA 58.923 45.455 0.00 0.00 0.00 2.59
692 733 5.517037 AGAATTTCGTAGTTCTCTTTGCG 57.483 39.130 0.00 0.00 28.93 4.85
729 786 3.895656 AGCGAAGGACCAGCAATATACTA 59.104 43.478 8.89 0.00 0.00 1.82
730 787 2.700897 AGCGAAGGACCAGCAATATACT 59.299 45.455 8.89 0.00 0.00 2.12
732 789 2.965831 AGAGCGAAGGACCAGCAATATA 59.034 45.455 8.89 0.00 0.00 0.86
748 805 1.529826 GCCGCAAAGTGAAATAGAGCG 60.530 52.381 0.00 0.00 42.93 5.03
751 808 3.146066 ACAAGCCGCAAAGTGAAATAGA 58.854 40.909 0.00 0.00 0.00 1.98
765 822 4.484236 TCAAATTGAAATGCTACAAGCCG 58.516 39.130 0.00 0.00 41.51 5.52
861 918 7.480542 GCCTAAATTCAATACACGTGTAAACAG 59.519 37.037 30.46 19.57 33.76 3.16
869 927 5.001232 ACACAGCCTAAATTCAATACACGT 58.999 37.500 0.00 0.00 0.00 4.49
918 976 6.183360 TGCAAAGTAACAATGTTGGATGAAGT 60.183 34.615 9.15 0.00 0.00 3.01
982 1040 5.192176 TGCCATCAACTGCAGTAAATGATA 58.808 37.500 29.42 19.70 32.77 2.15
1030 1088 5.738909 TCCTTTGCTTTCAAATTCAACCAA 58.261 33.333 0.00 0.00 40.97 3.67
1080 1138 3.441496 AAAAATCACATATGGCCAGCG 57.559 42.857 13.05 4.19 0.00 5.18
1102 1160 8.537728 AGGAAATATCACTGATGGCAATTTAA 57.462 30.769 1.42 0.00 0.00 1.52
1210 1276 2.029288 ACACACTTCAGCGCCATCG 61.029 57.895 2.29 0.00 39.07 3.84
1264 1330 4.860802 ACAATCATTAGGACATCCACCA 57.139 40.909 0.00 0.00 38.89 4.17
1265 1331 5.680619 TGTACAATCATTAGGACATCCACC 58.319 41.667 0.00 0.00 38.89 4.61
1266 1332 6.582636 TCTGTACAATCATTAGGACATCCAC 58.417 40.000 0.00 0.00 38.89 4.02
1312 1387 5.536554 AGTTGCACATGTAAGAGAATTCG 57.463 39.130 0.00 0.00 0.00 3.34
1410 1485 5.163622 CCATCCATCCATTTAACAGTGACAC 60.164 44.000 0.00 0.00 0.00 3.67
1912 2253 8.747666 GTTCTTCTCTACTATGAAGCATTAACG 58.252 37.037 0.00 0.00 39.41 3.18
2409 2755 0.038801 GCTGGAGCTTTTGTTCTGCC 60.039 55.000 0.00 0.00 38.21 4.85
2532 2878 4.785511 TTGAGCTACACTCTACCAAGAC 57.214 45.455 0.00 0.00 46.41 3.01
2611 2957 2.031120 CAAAGAGGTCCAAAGGTGCAA 58.969 47.619 0.00 0.00 0.00 4.08
2613 2959 0.315251 GCAAAGAGGTCCAAAGGTGC 59.685 55.000 0.00 0.00 0.00 5.01
2674 3033 4.122143 GCCTGCAAACATAAAATAGGCA 57.878 40.909 0.00 0.00 46.35 4.75
2675 3034 3.115554 CGCCTGCAAACATAAAATAGGC 58.884 45.455 0.00 0.00 44.29 3.93
2676 3035 4.142491 TGACGCCTGCAAACATAAAATAGG 60.142 41.667 0.00 0.00 0.00 2.57
2678 3037 4.142491 CCTGACGCCTGCAAACATAAAATA 60.142 41.667 0.00 0.00 0.00 1.40
2870 3229 7.977818 ACCTGAAATGATCATAGCCAGTTATA 58.022 34.615 20.80 3.22 37.44 0.98
2879 3238 5.233083 TGGCCTACCTGAAATGATCATAG 57.767 43.478 9.04 2.68 37.44 2.23
2898 3257 6.147656 CCTGGTAACTTTGAATTTTGAATGGC 59.852 38.462 0.00 0.00 37.61 4.40
2901 3260 7.931407 GGAACCTGGTAACTTTGAATTTTGAAT 59.069 33.333 0.00 0.00 37.61 2.57
2920 3279 6.071334 GGATTCCCTTTCTTTTAAGGAACCTG 60.071 42.308 4.02 0.00 46.28 4.00
2927 3286 7.397192 TCCTGAATGGATTCCCTTTCTTTTAAG 59.603 37.037 13.59 5.51 43.36 1.85
3030 3389 1.227943 AGGCGCAAAGAGCTGACAA 60.228 52.632 10.83 0.00 42.61 3.18
3108 3467 3.044059 GCGCCTTTGAGCTCGCATT 62.044 57.895 9.64 0.00 45.99 3.56
3146 3505 2.811431 CGGCATTTTGGACACTTCACTA 59.189 45.455 0.00 0.00 0.00 2.74
3203 3562 6.058183 GCCACTTATGTCATACTCCAGATTT 58.942 40.000 0.00 0.00 0.00 2.17
3212 3571 6.000219 AGAATGGATGCCACTTATGTCATAC 59.000 40.000 0.00 0.00 35.80 2.39
3284 3643 9.646427 GTTAGATCATCCATAGACAGATAAACC 57.354 37.037 0.00 0.00 0.00 3.27
3293 3652 6.876257 GGTCATTGGTTAGATCATCCATAGAC 59.124 42.308 17.35 17.35 36.05 2.59
3300 3659 6.656270 TGCATATGGTCATTGGTTAGATCATC 59.344 38.462 4.56 0.00 36.93 2.92
3385 3744 2.050350 CCTGACCATGCTGCTTGGG 61.050 63.158 30.64 18.14 38.64 4.12
3396 3755 4.340246 CTGCTGCTGCCCTGACCA 62.340 66.667 13.47 0.00 38.71 4.02
3435 3794 1.144298 CCCTGATCATCCTTGATGGCA 59.856 52.381 0.00 0.00 42.73 4.92
3464 3823 5.358160 ACAGCTCTACAAACTTTTCAGCTTT 59.642 36.000 0.00 0.00 33.44 3.51
3485 3844 2.058798 ACAACGATAGCACACGAACAG 58.941 47.619 0.00 0.00 42.67 3.16
3491 3850 2.404215 ACTGTGACAACGATAGCACAC 58.596 47.619 0.00 0.00 36.44 3.82
3499 3858 1.202132 GCTGCAAAACTGTGACAACGA 60.202 47.619 0.00 0.00 0.00 3.85
3519 3878 1.154035 GCAACGGCAAAATCCTCGG 60.154 57.895 0.00 0.00 40.72 4.63
3520 3879 1.154035 GGCAACGGCAAAATCCTCG 60.154 57.895 0.00 0.00 43.71 4.63
3521 3880 4.889427 GGCAACGGCAAAATCCTC 57.111 55.556 0.00 0.00 43.71 3.71
3542 3901 0.100682 TAGCGTCAGATCCAGCGTTC 59.899 55.000 0.00 0.00 34.34 3.95
3559 3918 8.906693 CATCGATAGTTTACAAGCTACACATAG 58.093 37.037 0.00 0.00 37.40 2.23
3571 3930 3.131577 ACGCTTCCCATCGATAGTTTACA 59.868 43.478 0.00 0.00 37.40 2.41
3572 3931 3.714391 ACGCTTCCCATCGATAGTTTAC 58.286 45.455 0.00 0.00 37.40 2.01
3573 3932 5.242171 TGATACGCTTCCCATCGATAGTTTA 59.758 40.000 0.00 0.00 37.40 2.01
3574 3933 2.981859 ACGCTTCCCATCGATAGTTT 57.018 45.000 0.00 0.00 37.40 2.66
3575 3934 3.572682 TGATACGCTTCCCATCGATAGTT 59.427 43.478 0.00 0.00 37.40 2.24
3576 3935 3.057456 GTGATACGCTTCCCATCGATAGT 60.057 47.826 0.00 0.00 37.40 2.12
3577 3936 3.502920 GTGATACGCTTCCCATCGATAG 58.497 50.000 0.00 0.00 0.00 2.08
3578 3937 2.230508 GGTGATACGCTTCCCATCGATA 59.769 50.000 0.00 0.00 0.00 2.92
3579 3938 1.000955 GGTGATACGCTTCCCATCGAT 59.999 52.381 0.00 0.00 0.00 3.59
3580 3939 0.387929 GGTGATACGCTTCCCATCGA 59.612 55.000 0.00 0.00 0.00 3.59
3581 3940 0.104120 TGGTGATACGCTTCCCATCG 59.896 55.000 0.00 0.00 0.00 3.84
3582 3941 1.583054 GTGGTGATACGCTTCCCATC 58.417 55.000 0.00 0.00 0.00 3.51
3583 3942 0.180406 GGTGGTGATACGCTTCCCAT 59.820 55.000 0.00 0.00 0.00 4.00
3584 3943 1.600107 GGTGGTGATACGCTTCCCA 59.400 57.895 0.00 0.00 0.00 4.37
3585 3944 1.153229 GGGTGGTGATACGCTTCCC 60.153 63.158 0.00 0.00 0.00 3.97
3586 3945 1.520787 CGGGTGGTGATACGCTTCC 60.521 63.158 0.00 0.00 0.00 3.46
3587 3946 0.457035 TACGGGTGGTGATACGCTTC 59.543 55.000 0.00 0.00 0.00 3.86
3588 3947 0.458669 CTACGGGTGGTGATACGCTT 59.541 55.000 0.00 0.00 0.00 4.68
3589 3948 1.389609 CCTACGGGTGGTGATACGCT 61.390 60.000 0.00 0.00 0.00 5.07
3590 3949 1.066918 CCTACGGGTGGTGATACGC 59.933 63.158 0.00 0.00 0.00 4.42
3591 3950 2.496942 ACCTACGGGTGGTGATACG 58.503 57.895 0.00 0.00 45.43 3.06
3604 3963 1.737355 TATACCACGCGGCCACCTAC 61.737 60.000 12.47 0.00 34.57 3.18
3605 3964 0.828762 ATATACCACGCGGCCACCTA 60.829 55.000 12.47 0.00 34.57 3.08
3606 3965 0.828762 TATATACCACGCGGCCACCT 60.829 55.000 12.47 0.00 34.57 4.00
3607 3966 0.248289 ATATATACCACGCGGCCACC 59.752 55.000 12.47 0.00 34.57 4.61
3608 3967 1.730064 CAATATATACCACGCGGCCAC 59.270 52.381 12.47 0.00 34.57 5.01
3609 3968 1.619332 TCAATATATACCACGCGGCCA 59.381 47.619 12.47 0.00 34.57 5.36
3610 3969 2.373540 TCAATATATACCACGCGGCC 57.626 50.000 12.47 0.00 34.57 6.13
3611 3970 3.930229 TCAATCAATATATACCACGCGGC 59.070 43.478 12.47 0.00 34.57 6.53
3612 3971 4.566759 CCTCAATCAATATATACCACGCGG 59.433 45.833 12.47 0.00 38.77 6.46
3613 3972 4.032900 GCCTCAATCAATATATACCACGCG 59.967 45.833 3.53 3.53 0.00 6.01
3614 3973 4.935205 TGCCTCAATCAATATATACCACGC 59.065 41.667 0.00 0.00 0.00 5.34
3615 3974 6.426633 TGTTGCCTCAATCAATATATACCACG 59.573 38.462 0.00 0.00 0.00 4.94
3616 3975 7.744087 TGTTGCCTCAATCAATATATACCAC 57.256 36.000 0.00 0.00 0.00 4.16
3617 3976 7.040478 GCTTGTTGCCTCAATCAATATATACCA 60.040 37.037 0.00 0.00 35.15 3.25
3618 3977 7.308435 GCTTGTTGCCTCAATCAATATATACC 58.692 38.462 0.00 0.00 35.15 2.73
3635 3994 4.347453 CCACGGCTGGCTTGTTGC 62.347 66.667 6.94 0.00 41.94 4.17
3643 4002 3.118454 CTTGTACGCCACGGCTGG 61.118 66.667 6.48 0.00 41.13 4.85
3644 4003 0.668096 TAACTTGTACGCCACGGCTG 60.668 55.000 6.48 2.53 39.32 4.85
3645 4004 0.389426 CTAACTTGTACGCCACGGCT 60.389 55.000 6.48 0.00 39.32 5.52
3646 4005 1.356527 CCTAACTTGTACGCCACGGC 61.357 60.000 0.00 0.00 37.85 5.68
3647 4006 0.244450 TCCTAACTTGTACGCCACGG 59.756 55.000 0.00 0.00 0.00 4.94
3648 4007 1.723003 GTTCCTAACTTGTACGCCACG 59.277 52.381 0.00 0.00 0.00 4.94
3649 4008 3.036075 AGTTCCTAACTTGTACGCCAC 57.964 47.619 0.00 0.00 39.04 5.01
3650 4009 4.439153 CGATAGTTCCTAACTTGTACGCCA 60.439 45.833 0.00 0.00 42.81 5.69
3651 4010 4.040376 CGATAGTTCCTAACTTGTACGCC 58.960 47.826 0.00 0.00 42.81 5.68
3652 4011 3.485013 GCGATAGTTCCTAACTTGTACGC 59.515 47.826 0.00 0.00 42.81 4.42
3653 4012 4.665212 TGCGATAGTTCCTAACTTGTACG 58.335 43.478 0.00 0.00 42.81 3.67
3654 4013 5.462398 CCATGCGATAGTTCCTAACTTGTAC 59.538 44.000 0.00 0.00 42.81 2.90
3655 4014 5.361571 TCCATGCGATAGTTCCTAACTTGTA 59.638 40.000 0.00 0.00 42.81 2.41
3656 4015 4.161565 TCCATGCGATAGTTCCTAACTTGT 59.838 41.667 0.00 0.00 42.81 3.16
3657 4016 4.693283 TCCATGCGATAGTTCCTAACTTG 58.307 43.478 0.00 0.00 42.81 3.16
3658 4017 5.300752 CATCCATGCGATAGTTCCTAACTT 58.699 41.667 0.00 0.00 42.81 2.66
3659 4018 4.800914 GCATCCATGCGATAGTTCCTAACT 60.801 45.833 0.00 0.00 44.67 2.24
3660 4019 3.433615 GCATCCATGCGATAGTTCCTAAC 59.566 47.826 0.00 0.00 44.67 2.34
3661 4020 3.664107 GCATCCATGCGATAGTTCCTAA 58.336 45.455 0.00 0.00 44.67 2.69
3662 4021 3.319137 GCATCCATGCGATAGTTCCTA 57.681 47.619 0.00 0.00 44.67 2.94
3663 4022 2.175878 GCATCCATGCGATAGTTCCT 57.824 50.000 0.00 0.00 44.67 3.36
3678 4037 3.126831 CTCCTGTAATCTGGAACGCATC 58.873 50.000 0.00 0.00 40.31 3.91
3679 4038 2.766263 TCTCCTGTAATCTGGAACGCAT 59.234 45.455 0.00 0.00 40.31 4.73
3680 4039 2.094182 GTCTCCTGTAATCTGGAACGCA 60.094 50.000 0.00 0.00 40.31 5.24
3681 4040 2.541556 GTCTCCTGTAATCTGGAACGC 58.458 52.381 0.00 0.00 40.31 4.84
3682 4041 2.479730 CGGTCTCCTGTAATCTGGAACG 60.480 54.545 0.00 0.00 40.31 3.95
3683 4042 2.758979 TCGGTCTCCTGTAATCTGGAAC 59.241 50.000 0.00 0.00 40.31 3.62
3684 4043 3.024547 CTCGGTCTCCTGTAATCTGGAA 58.975 50.000 0.00 0.00 40.31 3.53
3685 4044 2.241430 TCTCGGTCTCCTGTAATCTGGA 59.759 50.000 0.00 0.00 38.94 3.86
3686 4045 2.656002 TCTCGGTCTCCTGTAATCTGG 58.344 52.381 0.00 0.00 0.00 3.86
3687 4046 3.067461 CCTTCTCGGTCTCCTGTAATCTG 59.933 52.174 0.00 0.00 0.00 2.90
3688 4047 3.053544 TCCTTCTCGGTCTCCTGTAATCT 60.054 47.826 0.00 0.00 0.00 2.40
3689 4048 3.288964 TCCTTCTCGGTCTCCTGTAATC 58.711 50.000 0.00 0.00 0.00 1.75
3690 4049 3.053544 TCTCCTTCTCGGTCTCCTGTAAT 60.054 47.826 0.00 0.00 0.00 1.89
3691 4050 2.307980 TCTCCTTCTCGGTCTCCTGTAA 59.692 50.000 0.00 0.00 0.00 2.41
3692 4051 1.914108 TCTCCTTCTCGGTCTCCTGTA 59.086 52.381 0.00 0.00 0.00 2.74
3693 4052 0.699399 TCTCCTTCTCGGTCTCCTGT 59.301 55.000 0.00 0.00 0.00 4.00
3694 4053 1.748493 CTTCTCCTTCTCGGTCTCCTG 59.252 57.143 0.00 0.00 0.00 3.86
3695 4054 1.356398 ACTTCTCCTTCTCGGTCTCCT 59.644 52.381 0.00 0.00 0.00 3.69
3696 4055 1.842052 ACTTCTCCTTCTCGGTCTCC 58.158 55.000 0.00 0.00 0.00 3.71
3697 4056 3.757493 TGTAACTTCTCCTTCTCGGTCTC 59.243 47.826 0.00 0.00 0.00 3.36
3698 4057 3.759618 CTGTAACTTCTCCTTCTCGGTCT 59.240 47.826 0.00 0.00 0.00 3.85
3699 4058 3.506844 ACTGTAACTTCTCCTTCTCGGTC 59.493 47.826 0.00 0.00 0.00 4.79
3700 4059 3.498334 ACTGTAACTTCTCCTTCTCGGT 58.502 45.455 0.00 0.00 0.00 4.69
3701 4060 3.759618 AGACTGTAACTTCTCCTTCTCGG 59.240 47.826 0.00 0.00 0.00 4.63
3702 4061 5.379732 AAGACTGTAACTTCTCCTTCTCG 57.620 43.478 0.00 0.00 0.00 4.04
3703 4062 7.175293 TCTGTAAGACTGTAACTTCTCCTTCTC 59.825 40.741 0.00 0.00 38.67 2.87
3704 4063 7.005296 TCTGTAAGACTGTAACTTCTCCTTCT 58.995 38.462 0.00 0.00 38.67 2.85
3705 4064 7.216973 TCTGTAAGACTGTAACTTCTCCTTC 57.783 40.000 0.00 0.00 38.67 3.46
3721 4080 8.314751 CAAACTTCTATCCTTCCTTCTGTAAGA 58.685 37.037 0.00 0.00 44.68 2.10
3722 4081 8.314751 TCAAACTTCTATCCTTCCTTCTGTAAG 58.685 37.037 0.00 0.00 0.00 2.34
3723 4082 8.202461 TCAAACTTCTATCCTTCCTTCTGTAA 57.798 34.615 0.00 0.00 0.00 2.41
3724 4083 7.792364 TCAAACTTCTATCCTTCCTTCTGTA 57.208 36.000 0.00 0.00 0.00 2.74
3725 4084 6.688073 TCAAACTTCTATCCTTCCTTCTGT 57.312 37.500 0.00 0.00 0.00 3.41
3726 4085 6.936900 TGTTCAAACTTCTATCCTTCCTTCTG 59.063 38.462 0.00 0.00 0.00 3.02
3727 4086 7.079451 TGTTCAAACTTCTATCCTTCCTTCT 57.921 36.000 0.00 0.00 0.00 2.85
3728 4087 7.607991 TCATGTTCAAACTTCTATCCTTCCTTC 59.392 37.037 0.00 0.00 0.00 3.46
3729 4088 7.461749 TCATGTTCAAACTTCTATCCTTCCTT 58.538 34.615 0.00 0.00 0.00 3.36
3730 4089 7.020827 TCATGTTCAAACTTCTATCCTTCCT 57.979 36.000 0.00 0.00 0.00 3.36
3731 4090 7.687941 TTCATGTTCAAACTTCTATCCTTCC 57.312 36.000 0.00 0.00 0.00 3.46
4167 4526 8.990163 ACAATCTTAACCTAGGAAAAGTTTCA 57.010 30.769 17.98 2.98 38.92 2.69
4196 4555 9.958180 TCACAATGAGAAGGTTAGATGATTTTA 57.042 29.630 0.00 0.00 0.00 1.52
4197 4556 8.868522 TCACAATGAGAAGGTTAGATGATTTT 57.131 30.769 0.00 0.00 0.00 1.82
4211 4570 8.188139 GTTTTACAAAACCTCTCACAATGAGAA 58.812 33.333 9.67 0.00 44.15 2.87
4212 4571 7.703328 GTTTTACAAAACCTCTCACAATGAGA 58.297 34.615 8.21 8.21 44.47 3.27
4213 4572 7.914537 GTTTTACAAAACCTCTCACAATGAG 57.085 36.000 6.34 0.00 42.35 2.90
4226 4585 5.858581 CAGCTAGCTGATGGTTTTACAAAAC 59.141 40.000 36.47 8.71 46.30 2.43
4227 4586 5.767665 TCAGCTAGCTGATGGTTTTACAAAA 59.232 36.000 37.64 15.07 46.80 2.44
4228 4587 5.312895 TCAGCTAGCTGATGGTTTTACAAA 58.687 37.500 37.64 15.50 46.80 2.83
4229 4588 4.905429 TCAGCTAGCTGATGGTTTTACAA 58.095 39.130 37.64 15.69 46.80 2.41
4230 4589 4.551702 TCAGCTAGCTGATGGTTTTACA 57.448 40.909 37.64 16.20 46.80 2.41
4249 4608 2.716424 AGTTCTTTCCAACTGGGGATCA 59.284 45.455 0.00 0.00 35.18 2.92
4250 4609 3.441500 AGTTCTTTCCAACTGGGGATC 57.558 47.619 0.00 0.00 35.18 3.36
4251 4610 3.903530 AAGTTCTTTCCAACTGGGGAT 57.096 42.857 0.00 0.00 36.69 3.85
4252 4611 4.799715 TTAAGTTCTTTCCAACTGGGGA 57.200 40.909 0.00 0.00 36.69 4.81
4253 4612 6.889722 TGATATTAAGTTCTTTCCAACTGGGG 59.110 38.462 0.00 0.00 36.69 4.96
4254 4613 7.938140 TGATATTAAGTTCTTTCCAACTGGG 57.062 36.000 0.00 0.00 36.69 4.45
4255 4614 7.970614 GCTTGATATTAAGTTCTTTCCAACTGG 59.029 37.037 8.84 0.00 36.69 4.00
4256 4615 8.514594 TGCTTGATATTAAGTTCTTTCCAACTG 58.485 33.333 8.84 0.00 36.69 3.16
4257 4616 8.635765 TGCTTGATATTAAGTTCTTTCCAACT 57.364 30.769 8.84 0.00 38.30 3.16
4258 4617 9.129209 GTTGCTTGATATTAAGTTCTTTCCAAC 57.871 33.333 8.84 8.37 0.00 3.77
4259 4618 9.077885 AGTTGCTTGATATTAAGTTCTTTCCAA 57.922 29.630 8.84 0.89 0.00 3.53
4260 4619 8.635765 AGTTGCTTGATATTAAGTTCTTTCCA 57.364 30.769 8.84 0.00 0.00 3.53
4261 4620 9.346725 CAAGTTGCTTGATATTAAGTTCTTTCC 57.653 33.333 8.84 0.00 43.42 3.13
4280 4639 5.986135 TCAGAGAAAGAGTAACTCAAGTTGC 59.014 40.000 5.66 4.35 40.28 4.17
4281 4640 6.980978 TGTCAGAGAAAGAGTAACTCAAGTTG 59.019 38.462 5.66 0.00 38.90 3.16
4282 4641 7.113658 TGTCAGAGAAAGAGTAACTCAAGTT 57.886 36.000 0.46 0.46 41.73 2.66
4283 4642 6.716934 TGTCAGAGAAAGAGTAACTCAAGT 57.283 37.500 0.00 0.00 32.06 3.16
4284 4643 8.425577 TTTTGTCAGAGAAAGAGTAACTCAAG 57.574 34.615 0.00 0.00 32.06 3.02
4285 4644 8.830580 CATTTTGTCAGAGAAAGAGTAACTCAA 58.169 33.333 0.00 0.00 32.06 3.02
4286 4645 8.204160 TCATTTTGTCAGAGAAAGAGTAACTCA 58.796 33.333 0.00 0.00 32.06 3.41
4287 4646 8.594881 TCATTTTGTCAGAGAAAGAGTAACTC 57.405 34.615 0.00 0.00 0.00 3.01
4288 4647 8.964476 TTCATTTTGTCAGAGAAAGAGTAACT 57.036 30.769 0.00 0.00 0.00 2.24
4292 4651 8.906867 TGATTTTCATTTTGTCAGAGAAAGAGT 58.093 29.630 0.00 0.00 30.83 3.24
4293 4652 9.740239 TTGATTTTCATTTTGTCAGAGAAAGAG 57.260 29.630 0.00 0.00 30.83 2.85
4294 4653 9.520204 GTTGATTTTCATTTTGTCAGAGAAAGA 57.480 29.630 0.00 0.00 30.83 2.52
4295 4654 9.525409 AGTTGATTTTCATTTTGTCAGAGAAAG 57.475 29.630 0.00 0.00 30.83 2.62
4296 4655 9.874205 AAGTTGATTTTCATTTTGTCAGAGAAA 57.126 25.926 0.00 0.00 0.00 2.52
4297 4656 9.520204 GAAGTTGATTTTCATTTTGTCAGAGAA 57.480 29.630 0.00 0.00 0.00 2.87
4298 4657 8.685427 TGAAGTTGATTTTCATTTTGTCAGAGA 58.315 29.630 0.00 0.00 30.03 3.10
4299 4658 8.861033 TGAAGTTGATTTTCATTTTGTCAGAG 57.139 30.769 0.00 0.00 30.03 3.35
4300 4659 9.820725 ATTGAAGTTGATTTTCATTTTGTCAGA 57.179 25.926 0.00 0.00 34.76 3.27
4301 4660 9.858247 CATTGAAGTTGATTTTCATTTTGTCAG 57.142 29.630 0.00 0.00 34.76 3.51
4302 4661 9.381033 ACATTGAAGTTGATTTTCATTTTGTCA 57.619 25.926 0.00 0.00 34.76 3.58
4303 4662 9.640974 CACATTGAAGTTGATTTTCATTTTGTC 57.359 29.630 0.00 0.00 34.76 3.18
4304 4663 8.124199 GCACATTGAAGTTGATTTTCATTTTGT 58.876 29.630 0.00 0.00 34.76 2.83
4305 4664 8.339714 AGCACATTGAAGTTGATTTTCATTTTG 58.660 29.630 0.00 0.00 34.76 2.44
4306 4665 8.441312 AGCACATTGAAGTTGATTTTCATTTT 57.559 26.923 0.00 0.00 34.76 1.82
4307 4666 8.339714 CAAGCACATTGAAGTTGATTTTCATTT 58.660 29.630 0.00 0.00 41.83 2.32
4308 4667 7.041644 CCAAGCACATTGAAGTTGATTTTCATT 60.042 33.333 0.00 0.00 41.83 2.57
4309 4668 6.425721 CCAAGCACATTGAAGTTGATTTTCAT 59.574 34.615 0.00 0.00 41.83 2.57
4310 4669 5.754406 CCAAGCACATTGAAGTTGATTTTCA 59.246 36.000 0.00 0.00 41.83 2.69
4311 4670 5.754890 ACCAAGCACATTGAAGTTGATTTTC 59.245 36.000 0.00 0.00 41.83 2.29
4312 4671 5.673514 ACCAAGCACATTGAAGTTGATTTT 58.326 33.333 0.00 0.00 41.83 1.82
4313 4672 5.280654 ACCAAGCACATTGAAGTTGATTT 57.719 34.783 0.00 0.00 41.83 2.17
4314 4673 4.942761 ACCAAGCACATTGAAGTTGATT 57.057 36.364 0.00 0.00 41.83 2.57
4315 4674 4.083324 CGTACCAAGCACATTGAAGTTGAT 60.083 41.667 0.00 0.00 41.83 2.57
4316 4675 3.249799 CGTACCAAGCACATTGAAGTTGA 59.750 43.478 0.00 0.00 41.83 3.18
4317 4676 3.003275 ACGTACCAAGCACATTGAAGTTG 59.997 43.478 0.00 0.00 41.83 3.16
4318 4677 3.003275 CACGTACCAAGCACATTGAAGTT 59.997 43.478 0.00 0.00 41.83 2.66
4319 4678 2.548057 CACGTACCAAGCACATTGAAGT 59.452 45.455 0.00 0.00 41.83 3.01
4320 4679 2.665519 GCACGTACCAAGCACATTGAAG 60.666 50.000 0.00 0.00 41.83 3.02
4321 4680 1.265635 GCACGTACCAAGCACATTGAA 59.734 47.619 0.00 0.00 41.83 2.69
4322 4681 0.871722 GCACGTACCAAGCACATTGA 59.128 50.000 0.00 0.00 41.83 2.57
4323 4682 0.590682 TGCACGTACCAAGCACATTG 59.409 50.000 0.00 0.00 38.74 2.82
4324 4683 1.199789 CATGCACGTACCAAGCACATT 59.800 47.619 0.00 0.00 41.60 2.71
4325 4684 0.804364 CATGCACGTACCAAGCACAT 59.196 50.000 0.00 0.00 41.60 3.21
4326 4685 1.233950 CCATGCACGTACCAAGCACA 61.234 55.000 0.00 0.00 41.60 4.57
4327 4686 0.953471 TCCATGCACGTACCAAGCAC 60.953 55.000 0.00 0.00 41.60 4.40
4328 4687 0.250510 TTCCATGCACGTACCAAGCA 60.251 50.000 0.00 0.00 43.14 3.91
4329 4688 0.447801 CTTCCATGCACGTACCAAGC 59.552 55.000 0.00 0.00 0.00 4.01
4330 4689 1.732259 GTCTTCCATGCACGTACCAAG 59.268 52.381 0.00 0.00 0.00 3.61
4331 4690 1.070914 TGTCTTCCATGCACGTACCAA 59.929 47.619 0.00 0.00 0.00 3.67
4332 4691 0.682292 TGTCTTCCATGCACGTACCA 59.318 50.000 0.00 0.00 0.00 3.25
4333 4692 1.732259 CTTGTCTTCCATGCACGTACC 59.268 52.381 0.00 0.00 0.00 3.34
4334 4693 2.683968 TCTTGTCTTCCATGCACGTAC 58.316 47.619 0.00 0.00 0.00 3.67
4335 4694 3.610040 ATCTTGTCTTCCATGCACGTA 57.390 42.857 0.00 0.00 0.00 3.57
4336 4695 2.479566 ATCTTGTCTTCCATGCACGT 57.520 45.000 0.00 0.00 0.00 4.49
4337 4696 2.159476 CCAATCTTGTCTTCCATGCACG 60.159 50.000 0.00 0.00 0.00 5.34
4338 4697 2.416431 GCCAATCTTGTCTTCCATGCAC 60.416 50.000 0.00 0.00 0.00 4.57
4339 4698 1.820519 GCCAATCTTGTCTTCCATGCA 59.179 47.619 0.00 0.00 0.00 3.96
4340 4699 2.097825 AGCCAATCTTGTCTTCCATGC 58.902 47.619 0.00 0.00 0.00 4.06
4341 4700 3.349927 TCAGCCAATCTTGTCTTCCATG 58.650 45.455 0.00 0.00 0.00 3.66
4342 4701 3.265221 TCTCAGCCAATCTTGTCTTCCAT 59.735 43.478 0.00 0.00 0.00 3.41
4343 4702 2.639347 TCTCAGCCAATCTTGTCTTCCA 59.361 45.455 0.00 0.00 0.00 3.53
4344 4703 3.055530 TCTCTCAGCCAATCTTGTCTTCC 60.056 47.826 0.00 0.00 0.00 3.46
4345 4704 4.199432 TCTCTCAGCCAATCTTGTCTTC 57.801 45.455 0.00 0.00 0.00 2.87
4346 4705 4.840716 ATCTCTCAGCCAATCTTGTCTT 57.159 40.909 0.00 0.00 0.00 3.01
4347 4706 4.344679 CCTATCTCTCAGCCAATCTTGTCT 59.655 45.833 0.00 0.00 0.00 3.41
4348 4707 4.100808 ACCTATCTCTCAGCCAATCTTGTC 59.899 45.833 0.00 0.00 0.00 3.18
4349 4708 4.036518 ACCTATCTCTCAGCCAATCTTGT 58.963 43.478 0.00 0.00 0.00 3.16
4350 4709 4.686191 ACCTATCTCTCAGCCAATCTTG 57.314 45.455 0.00 0.00 0.00 3.02
4351 4710 4.283212 GCTACCTATCTCTCAGCCAATCTT 59.717 45.833 0.00 0.00 0.00 2.40
4352 4711 3.831911 GCTACCTATCTCTCAGCCAATCT 59.168 47.826 0.00 0.00 0.00 2.40
4353 4712 3.576118 TGCTACCTATCTCTCAGCCAATC 59.424 47.826 0.00 0.00 0.00 2.67
4354 4713 3.323403 GTGCTACCTATCTCTCAGCCAAT 59.677 47.826 0.00 0.00 0.00 3.16
4355 4714 2.695666 GTGCTACCTATCTCTCAGCCAA 59.304 50.000 0.00 0.00 0.00 4.52
4356 4715 2.311463 GTGCTACCTATCTCTCAGCCA 58.689 52.381 0.00 0.00 0.00 4.75
4357 4716 1.616374 GGTGCTACCTATCTCTCAGCC 59.384 57.143 0.00 0.00 34.73 4.85
4358 4717 2.311463 TGGTGCTACCTATCTCTCAGC 58.689 52.381 6.83 0.00 39.58 4.26
4359 4718 6.849085 ATATTGGTGCTACCTATCTCTCAG 57.151 41.667 6.83 0.00 39.58 3.35
4360 4719 8.901472 ATAATATTGGTGCTACCTATCTCTCA 57.099 34.615 0.00 0.00 39.58 3.27
4361 4720 9.593134 CAATAATATTGGTGCTACCTATCTCTC 57.407 37.037 5.12 0.00 39.58 3.20
4362 4721 9.105844 ACAATAATATTGGTGCTACCTATCTCT 57.894 33.333 16.36 0.00 39.58 3.10
4363 4722 9.726438 AACAATAATATTGGTGCTACCTATCTC 57.274 33.333 16.36 0.00 39.58 2.75
4364 4723 9.507329 CAACAATAATATTGGTGCTACCTATCT 57.493 33.333 16.87 0.00 39.58 1.98
4365 4724 8.730680 CCAACAATAATATTGGTGCTACCTATC 58.269 37.037 22.03 0.00 40.51 2.08
4366 4725 8.444783 TCCAACAATAATATTGGTGCTACCTAT 58.555 33.333 22.03 7.05 44.86 2.57
4367 4726 7.807198 TCCAACAATAATATTGGTGCTACCTA 58.193 34.615 22.03 3.77 44.86 3.08
4368 4727 6.668645 TCCAACAATAATATTGGTGCTACCT 58.331 36.000 22.03 0.00 44.86 3.08
4369 4728 6.952773 TCCAACAATAATATTGGTGCTACC 57.047 37.500 22.03 0.00 44.86 3.18
4372 4731 9.985730 CATATTTCCAACAATAATATTGGTGCT 57.014 29.630 22.03 10.69 44.86 4.40
4373 4732 9.762933 ACATATTTCCAACAATAATATTGGTGC 57.237 29.630 22.03 0.00 44.86 5.01
4381 4740 9.799106 CCTCTAGGACATATTTCCAACAATAAT 57.201 33.333 10.52 0.00 38.25 1.28
4382 4741 7.719633 GCCTCTAGGACATATTTCCAACAATAA 59.280 37.037 10.52 0.00 38.25 1.40
4383 4742 7.147391 TGCCTCTAGGACATATTTCCAACAATA 60.147 37.037 10.52 0.00 38.25 1.90
4384 4743 6.064717 GCCTCTAGGACATATTTCCAACAAT 58.935 40.000 10.52 0.00 38.25 2.71
4385 4744 5.045213 TGCCTCTAGGACATATTTCCAACAA 60.045 40.000 10.52 0.00 38.25 2.83
4386 4745 4.473196 TGCCTCTAGGACATATTTCCAACA 59.527 41.667 10.52 0.00 38.25 3.33
4387 4746 5.036117 TGCCTCTAGGACATATTTCCAAC 57.964 43.478 10.52 0.00 38.25 3.77
4388 4747 5.708736 TTGCCTCTAGGACATATTTCCAA 57.291 39.130 10.52 0.00 38.25 3.53
4389 4748 5.912149 ATTGCCTCTAGGACATATTTCCA 57.088 39.130 10.52 0.00 38.25 3.53
4390 4749 9.959721 TTATTATTGCCTCTAGGACATATTTCC 57.040 33.333 0.00 0.00 37.39 3.13
4395 4754 9.739276 CCATTTTATTATTGCCTCTAGGACATA 57.261 33.333 0.00 0.00 37.39 2.29
4396 4755 8.227507 ACCATTTTATTATTGCCTCTAGGACAT 58.772 33.333 0.00 0.00 37.39 3.06
4397 4756 7.582719 ACCATTTTATTATTGCCTCTAGGACA 58.417 34.615 0.00 0.00 37.39 4.02
4398 4757 8.465273 AACCATTTTATTATTGCCTCTAGGAC 57.535 34.615 0.00 0.00 37.39 3.85
4435 4794 9.685276 ACAATAGACAATTATCATGAACAAGGA 57.315 29.630 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.