Multiple sequence alignment - TraesCS2B01G466500
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS2B01G466500
chr2B
100.000
3770
0
0
1
3770
662372014
662375783
0.000000e+00
6962
1
TraesCS2B01G466500
chr2B
85.904
2263
154
64
167
2367
661850338
661852497
0.000000e+00
2259
2
TraesCS2B01G466500
chr2D
90.484
3615
197
65
1
3554
555575417
555578945
0.000000e+00
4634
3
TraesCS2B01G466500
chr2D
86.572
2383
147
65
1
2288
555394079
555396383
0.000000e+00
2468
4
TraesCS2B01G466500
chr2D
88.000
150
13
3
3622
3770
555613116
555613261
5.010000e-39
172
5
TraesCS2B01G466500
chr2D
86.861
137
17
1
1386
1522
636638923
636639058
6.520000e-33
152
6
TraesCS2B01G466500
chr2A
85.503
3518
231
117
1
3393
695149036
695152399
0.000000e+00
3413
7
TraesCS2B01G466500
chr2A
85.520
221
21
7
3560
3770
695152704
695152923
1.760000e-53
220
8
TraesCS2B01G466500
chr2A
86.429
140
18
1
1383
1522
625243570
625243708
6.520000e-33
152
9
TraesCS2B01G466500
chr6D
93.023
129
8
1
1141
1269
352835526
352835653
1.790000e-43
187
10
TraesCS2B01G466500
chr6D
90.000
130
13
0
1397
1526
352835668
352835797
6.480000e-38
169
11
TraesCS2B01G466500
chr6D
94.444
90
5
0
1627
1716
352835881
352835970
5.080000e-29
139
12
TraesCS2B01G466500
chr6A
93.023
129
8
1
1141
1269
490301789
490301916
1.790000e-43
187
13
TraesCS2B01G466500
chr6A
91.538
130
11
0
1397
1526
490301931
490302060
2.990000e-41
180
14
TraesCS2B01G466500
chr6A
95.349
86
4
0
1627
1712
490302137
490302222
1.830000e-28
137
15
TraesCS2B01G466500
chr6B
90.909
132
11
1
1141
1272
526101297
526101167
3.870000e-40
176
16
TraesCS2B01G466500
chr6B
90.769
130
12
0
1397
1526
526101155
526101026
1.390000e-39
174
17
TraesCS2B01G466500
chr6B
95.349
86
4
0
1627
1712
526100919
526100834
1.830000e-28
137
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS2B01G466500
chr2B
662372014
662375783
3769
False
6962.0
6962
100.0000
1
3770
1
chr2B.!!$F2
3769
1
TraesCS2B01G466500
chr2B
661850338
661852497
2159
False
2259.0
2259
85.9040
167
2367
1
chr2B.!!$F1
2200
2
TraesCS2B01G466500
chr2D
555575417
555578945
3528
False
4634.0
4634
90.4840
1
3554
1
chr2D.!!$F2
3553
3
TraesCS2B01G466500
chr2D
555394079
555396383
2304
False
2468.0
2468
86.5720
1
2288
1
chr2D.!!$F1
2287
4
TraesCS2B01G466500
chr2A
695149036
695152923
3887
False
1816.5
3413
85.5115
1
3770
2
chr2A.!!$F2
3769
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
814
922
0.178301
GGCCGGGGTTTTGTTTTTGA
59.822
50.0
2.18
0.0
0.00
2.69
F
1116
1267
0.107654
GAAGCAGCCGGATTGGTAGT
60.108
55.0
5.05
0.0
41.21
2.73
F
1972
2159
0.388520
TCGACATGCTTCTGGACACG
60.389
55.0
0.00
0.0
0.00
4.49
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1948
2135
0.247460
CCAGAAGCATGTCGAGGTCA
59.753
55.0
0.0
0.00
0.00
4.02
R
2463
2677
0.745468
AACTAAGAGATCGGACGGGC
59.255
55.0
0.0
0.00
0.00
6.13
R
3318
3561
0.036164
TCCACCACGTGAGATTTGGG
59.964
55.0
19.3
7.36
35.23
4.12
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
120
144
2.166829
ACTGTTTGTTGTGAGGTTGCA
58.833
42.857
0.00
0.00
0.00
4.08
121
145
2.164219
ACTGTTTGTTGTGAGGTTGCAG
59.836
45.455
0.00
0.00
0.00
4.41
143
167
3.414700
GCACCGTCCTGCAGTTCG
61.415
66.667
13.81
15.78
37.11
3.95
162
191
1.812324
CGCCGGGGCTGTTATAATTGA
60.812
52.381
5.22
0.00
39.32
2.57
189
227
6.461110
AAAATGGGATGAATTAGACAGCAG
57.539
37.500
0.00
0.00
0.00
4.24
238
280
2.541762
GCTCTGTTGATTCACCTATCGC
59.458
50.000
0.00
0.00
0.00
4.58
243
285
2.515926
TGATTCACCTATCGCAGCTC
57.484
50.000
0.00
0.00
0.00
4.09
272
319
1.165270
GCGTACTGTTGCCCAATCTT
58.835
50.000
0.00
0.00
0.00
2.40
330
378
1.818674
GCTTACTGTTCCCCACCATTG
59.181
52.381
0.00
0.00
0.00
2.82
351
400
3.493129
TGAAAACTGATTTGGACGAGTCG
59.507
43.478
11.85
11.85
0.00
4.18
361
410
0.389948
GGACGAGTCGTGCAAAGGAT
60.390
55.000
29.25
0.00
46.80
3.24
548
622
3.537874
GATCCCGTCGGTCCCAGG
61.538
72.222
11.06
0.00
0.00
4.45
582
656
3.753294
AGGCACGAAAGAAGAGAAGAA
57.247
42.857
0.00
0.00
0.00
2.52
583
657
3.394719
AGGCACGAAAGAAGAGAAGAAC
58.605
45.455
0.00
0.00
0.00
3.01
584
658
2.480802
GGCACGAAAGAAGAGAAGAACC
59.519
50.000
0.00
0.00
0.00
3.62
587
661
2.704065
ACGAAAGAAGAGAAGAACCCCA
59.296
45.455
0.00
0.00
0.00
4.96
590
664
4.657013
GAAAGAAGAGAAGAACCCCACAT
58.343
43.478
0.00
0.00
0.00
3.21
591
665
3.990959
AGAAGAGAAGAACCCCACATC
57.009
47.619
0.00
0.00
0.00
3.06
592
666
2.573915
AGAAGAGAAGAACCCCACATCC
59.426
50.000
0.00
0.00
0.00
3.51
593
667
2.044793
AGAGAAGAACCCCACATCCA
57.955
50.000
0.00
0.00
0.00
3.41
594
668
1.630878
AGAGAAGAACCCCACATCCAC
59.369
52.381
0.00
0.00
0.00
4.02
595
669
0.698818
AGAAGAACCCCACATCCACC
59.301
55.000
0.00
0.00
0.00
4.61
596
670
0.698818
GAAGAACCCCACATCCACCT
59.301
55.000
0.00
0.00
0.00
4.00
597
671
1.913419
GAAGAACCCCACATCCACCTA
59.087
52.381
0.00
0.00
0.00
3.08
598
672
1.584724
AGAACCCCACATCCACCTAG
58.415
55.000
0.00
0.00
0.00
3.02
605
689
2.564947
CCCACATCCACCTAGCTAGATC
59.435
54.545
22.70
0.00
0.00
2.75
617
701
1.442857
CTAGATCGCGCCGATGACC
60.443
63.158
17.23
5.65
47.00
4.02
618
702
3.249973
TAGATCGCGCCGATGACCG
62.250
63.158
17.23
0.00
47.00
4.79
717
801
2.591715
ACAGACACACGCAAGGCC
60.592
61.111
0.00
0.00
46.39
5.19
807
915
4.614036
AGTGGGGCCGGGGTTTTG
62.614
66.667
2.18
0.00
0.00
2.44
813
921
0.816018
GGGCCGGGGTTTTGTTTTTG
60.816
55.000
2.18
0.00
0.00
2.44
814
922
0.178301
GGCCGGGGTTTTGTTTTTGA
59.822
50.000
2.18
0.00
0.00
2.69
815
923
1.292061
GCCGGGGTTTTGTTTTTGAC
58.708
50.000
2.18
0.00
0.00
3.18
1006
1133
2.669569
CCAGTGTCCCGGTTGCAG
60.670
66.667
0.00
0.00
0.00
4.41
1027
1170
1.464608
CTTGCACATGTCCGGTACAAG
59.535
52.381
0.00
4.54
42.70
3.16
1030
1173
1.067142
GCACATGTCCGGTACAAGAGA
60.067
52.381
13.66
0.00
42.70
3.10
1031
1174
2.881074
CACATGTCCGGTACAAGAGAG
58.119
52.381
13.66
5.04
42.70
3.20
1102
1249
2.350522
GCTAGCTAGCTGTTTGAAGCA
58.649
47.619
33.71
2.47
46.08
3.91
1110
1261
0.883833
CTGTTTGAAGCAGCCGGATT
59.116
50.000
5.05
0.00
0.00
3.01
1113
1264
0.539438
TTTGAAGCAGCCGGATTGGT
60.539
50.000
5.05
5.27
41.21
3.67
1116
1267
0.107654
GAAGCAGCCGGATTGGTAGT
60.108
55.000
5.05
0.00
41.21
2.73
1344
1505
5.119743
GCTCTTTGAGTTCATGCCAATTTTC
59.880
40.000
0.00
0.00
31.39
2.29
1374
1536
3.854666
AGAACTCGACTGATTCATGTGG
58.145
45.455
0.00
0.00
0.00
4.17
1542
1704
4.242475
CAAGTACGTTCATCACTTGCCTA
58.758
43.478
13.54
0.00
41.75
3.93
1543
1705
4.530710
AGTACGTTCATCACTTGCCTAA
57.469
40.909
0.00
0.00
0.00
2.69
1544
1706
4.243270
AGTACGTTCATCACTTGCCTAAC
58.757
43.478
0.00
0.00
0.00
2.34
1545
1707
2.066262
ACGTTCATCACTTGCCTAACG
58.934
47.619
0.00
0.00
43.76
3.18
1546
1708
2.288579
ACGTTCATCACTTGCCTAACGA
60.289
45.455
11.79
0.00
41.48
3.85
1552
1714
2.499197
TCACTTGCCTAACGATTGCAA
58.501
42.857
0.00
0.00
42.28
4.08
1573
1735
2.089980
CACCCTGAAGAAAGCTCCATG
58.910
52.381
0.00
0.00
0.00
3.66
1887
2068
3.485431
CGGCGAGCAGAGCAACAG
61.485
66.667
0.00
0.00
36.08
3.16
1963
2150
1.160137
GCTTTGACCTCGACATGCTT
58.840
50.000
0.00
0.00
0.00
3.91
1972
2159
0.388520
TCGACATGCTTCTGGACACG
60.389
55.000
0.00
0.00
0.00
4.49
2197
2393
1.975327
CAAGGGAACAGAGGCGAGA
59.025
57.895
0.00
0.00
0.00
4.04
2374
2585
1.745489
GTGCTACTTCCAAGCCGGG
60.745
63.158
2.18
0.00
39.30
5.73
2419
2633
4.821589
GGACCCGAAGCCTCTGCG
62.822
72.222
0.00
0.00
44.33
5.18
2425
2639
1.511305
CGAAGCCTCTGCGGTTCTA
59.489
57.895
0.00
0.00
44.33
2.10
2426
2640
0.526524
CGAAGCCTCTGCGGTTCTAG
60.527
60.000
0.00
0.00
44.33
2.43
2429
2643
1.079127
GCCTCTGCGGTTCTAGCAA
60.079
57.895
0.00
0.00
44.67
3.91
2437
2651
1.006832
CGGTTCTAGCAAACATCCCG
58.993
55.000
0.00
0.00
0.00
5.14
2456
2670
6.546428
TCCCGATGGATTTATAAGATCTCC
57.454
41.667
0.00
0.00
35.03
3.71
2457
2671
6.022958
TCCCGATGGATTTATAAGATCTCCA
58.977
40.000
0.00
0.00
40.12
3.86
2458
2672
6.673978
TCCCGATGGATTTATAAGATCTCCAT
59.326
38.462
15.32
15.32
46.70
3.41
2463
2677
6.701340
TGGATTTATAAGATCTCCATCACCG
58.299
40.000
0.00
0.00
31.19
4.94
2464
2678
5.582665
GGATTTATAAGATCTCCATCACCGC
59.417
44.000
0.00
0.00
0.00
5.68
2482
2701
0.745468
GCCCGTCCGATCTCTTAGTT
59.255
55.000
0.00
0.00
0.00
2.24
2495
2714
7.117812
CCGATCTCTTAGTTTAGAAACAAGCAA
59.882
37.037
7.82
2.68
41.30
3.91
2709
2933
0.101759
ACACACTGCGACTACGTTGT
59.898
50.000
1.24
1.24
41.98
3.32
2740
2964
0.530288
AAAGTGGTGCAACGCAAACT
59.470
45.000
19.16
1.74
41.47
2.66
2910
3137
5.540911
TCGAAATTCCTACTACGGTTTTGT
58.459
37.500
0.00
0.00
0.00
2.83
2978
3207
0.110486
TTTGGTGAAGCCTGTCTCCC
59.890
55.000
0.00
0.00
38.35
4.30
3070
3299
0.315251
CGTGTCCTTGAGTGAGCAGA
59.685
55.000
0.00
0.00
0.00
4.26
3148
3377
1.832998
GGTTACCTAACACGGGATCCA
59.167
52.381
15.23
0.00
37.92
3.41
3235
3465
0.108898
CTCCTGGACTTGAGTGCTCG
60.109
60.000
4.31
0.00
37.28
5.03
3296
3532
8.405531
TCTTTGATAAAACATATGTAAGCTGCC
58.594
33.333
9.21
0.00
0.00
4.85
3298
3534
7.880160
TGATAAAACATATGTAAGCTGCCTT
57.120
32.000
9.21
0.00
35.05
4.35
3318
3561
1.134521
TGTTGTCGATGGACTATGGCC
60.135
52.381
9.41
0.00
43.79
5.36
3349
3592
2.771943
ACGTGGTGGAGATGAATGGTAT
59.228
45.455
0.00
0.00
0.00
2.73
3357
3600
3.258372
GGAGATGAATGGTATGCCTCGTA
59.742
47.826
0.16
0.00
35.27
3.43
3370
3613
1.337821
CCTCGTAGAATATTCCGCGC
58.662
55.000
18.64
0.00
34.09
6.86
3393
3636
3.368531
CCCTCACCTAAGCTGAAGTACAC
60.369
52.174
0.00
0.00
0.00
2.90
3394
3637
3.511934
CCTCACCTAAGCTGAAGTACACT
59.488
47.826
0.00
0.00
0.00
3.55
3397
3640
6.546403
CCTCACCTAAGCTGAAGTACACTATA
59.454
42.308
0.00
0.00
0.00
1.31
3398
3641
7.231722
CCTCACCTAAGCTGAAGTACACTATAT
59.768
40.741
0.00
0.00
0.00
0.86
3403
3646
9.250624
CCTAAGCTGAAGTACACTATATGTTTC
57.749
37.037
0.00
0.00
43.19
2.78
3455
3701
1.067635
CGCAGCAGCAACCCTTATTTT
60.068
47.619
0.82
0.00
42.27
1.82
3491
3737
2.356069
CCGGAGCAAGAAAATAGGCTTC
59.644
50.000
0.00
0.00
36.59
3.86
3513
3759
7.168637
GCTTCATCATTATGTCGCAAATGATTT
59.831
33.333
16.99
0.00
45.90
2.17
3599
4012
5.952526
TTTCTTATTTCCCGGAACAAGAC
57.047
39.130
17.50
0.00
28.83
3.01
3600
4013
4.903045
TCTTATTTCCCGGAACAAGACT
57.097
40.909
15.18
0.00
0.00
3.24
3601
4014
5.237236
TCTTATTTCCCGGAACAAGACTT
57.763
39.130
15.18
0.00
0.00
3.01
3602
4015
5.243207
TCTTATTTCCCGGAACAAGACTTC
58.757
41.667
15.18
0.00
0.00
3.01
3603
4016
3.502123
ATTTCCCGGAACAAGACTTCA
57.498
42.857
0.73
0.00
0.00
3.02
3604
4017
2.249844
TTCCCGGAACAAGACTTCAC
57.750
50.000
0.73
0.00
0.00
3.18
3605
4018
1.124780
TCCCGGAACAAGACTTCACA
58.875
50.000
0.73
0.00
0.00
3.58
3607
4020
1.873591
CCCGGAACAAGACTTCACAAG
59.126
52.381
0.73
0.00
0.00
3.16
3608
4021
1.264288
CCGGAACAAGACTTCACAAGC
59.736
52.381
0.00
0.00
0.00
4.01
3609
4022
1.070577
CGGAACAAGACTTCACAAGCG
60.071
52.381
0.00
0.00
0.00
4.68
3633
4047
7.128331
CGCAATAAAATTCATCTACACTGGAG
58.872
38.462
0.00
0.00
0.00
3.86
3639
4053
8.425577
AAAATTCATCTACACTGGAGTTATCG
57.574
34.615
0.00
0.00
0.00
2.92
3641
4055
6.769134
TTCATCTACACTGGAGTTATCGAA
57.231
37.500
0.00
0.00
0.00
3.71
3676
4091
7.118723
TCATCCACACTGGCTAATCTTATTTT
58.881
34.615
0.00
0.00
37.47
1.82
3677
4092
7.615365
TCATCCACACTGGCTAATCTTATTTTT
59.385
33.333
0.00
0.00
37.47
1.94
3722
4137
0.331616
ATCTAACCACTGGGCCAACC
59.668
55.000
8.04
0.00
37.90
3.77
3723
4138
0.770557
TCTAACCACTGGGCCAACCT
60.771
55.000
8.04
0.00
41.11
3.50
3724
4139
0.112412
CTAACCACTGGGCCAACCTT
59.888
55.000
8.04
0.00
41.11
3.50
3725
4140
1.353022
CTAACCACTGGGCCAACCTTA
59.647
52.381
8.04
0.20
41.11
2.69
3726
4141
0.783850
AACCACTGGGCCAACCTTAT
59.216
50.000
8.04
0.00
41.11
1.73
3727
4142
0.039618
ACCACTGGGCCAACCTTATG
59.960
55.000
8.04
0.00
41.11
1.90
3728
4143
0.684153
CCACTGGGCCAACCTTATGG
60.684
60.000
8.04
4.98
43.70
2.74
3766
4186
1.621814
CGACTTTAGGTCCACCAAGGA
59.378
52.381
0.00
0.00
46.75
3.36
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
120
144
4.008933
GCAGGACGGTGCTGGACT
62.009
66.667
27.42
0.00
40.54
3.85
121
145
4.314440
TGCAGGACGGTGCTGGAC
62.314
66.667
27.42
14.46
44.32
4.02
143
167
1.975660
TCAATTATAACAGCCCCGGC
58.024
50.000
0.00
0.00
42.33
6.13
146
170
7.495606
CCATTTTTCTTCAATTATAACAGCCCC
59.504
37.037
0.00
0.00
0.00
5.80
149
173
9.822185
ATCCCATTTTTCTTCAATTATAACAGC
57.178
29.630
0.00
0.00
0.00
4.40
162
191
7.178983
TGCTGTCTAATTCATCCCATTTTTCTT
59.821
33.333
0.00
0.00
0.00
2.52
189
227
6.913873
TTTGCACCTACGATTTATTAGACC
57.086
37.500
0.00
0.00
0.00
3.85
238
280
0.602638
TACGCACTGTTTGGGAGCTG
60.603
55.000
0.00
0.00
40.70
4.24
272
319
3.426963
GCTTCGAACCAAATTTATCGCCA
60.427
43.478
12.69
4.58
35.39
5.69
330
378
3.493503
ACGACTCGTCCAAATCAGTTTTC
59.506
43.478
0.00
0.00
33.69
2.29
351
400
4.783461
GGAACGGATCTCATCCTTTGCAC
61.783
52.174
7.99
0.00
44.72
4.57
378
435
0.252789
TTAACCGGGACAGGGATGGA
60.253
55.000
6.32
0.00
35.02
3.41
522
595
3.186047
GACGGGATCGCGTGGTTG
61.186
66.667
37.95
10.32
40.63
3.77
548
622
2.436115
GCCTAGTTGGGTGTCCGC
60.436
66.667
0.00
0.00
36.00
5.54
582
656
0.341961
TAGCTAGGTGGATGTGGGGT
59.658
55.000
4.27
0.00
0.00
4.95
583
657
1.051812
CTAGCTAGGTGGATGTGGGG
58.948
60.000
13.32
0.00
0.00
4.96
584
658
2.088104
TCTAGCTAGGTGGATGTGGG
57.912
55.000
20.58
0.00
0.00
4.61
587
661
1.889829
GCGATCTAGCTAGGTGGATGT
59.110
52.381
23.50
3.32
0.00
3.06
590
664
1.516365
GCGCGATCTAGCTAGGTGGA
61.516
60.000
19.19
10.61
34.40
4.02
591
665
1.081108
GCGCGATCTAGCTAGGTGG
60.081
63.158
20.58
15.95
34.40
4.61
592
666
1.081108
GGCGCGATCTAGCTAGGTG
60.081
63.158
20.58
12.04
34.40
4.00
593
667
2.618219
CGGCGCGATCTAGCTAGGT
61.618
63.158
20.58
14.33
34.40
3.08
594
668
1.649390
ATCGGCGCGATCTAGCTAGG
61.649
60.000
20.58
6.04
43.45
3.02
595
669
0.522286
CATCGGCGCGATCTAGCTAG
60.522
60.000
12.10
15.01
45.19
3.42
596
670
0.953960
TCATCGGCGCGATCTAGCTA
60.954
55.000
12.10
0.00
45.19
3.32
597
671
2.256764
CATCGGCGCGATCTAGCT
59.743
61.111
12.10
0.00
45.19
3.32
598
672
2.083522
GTCATCGGCGCGATCTAGC
61.084
63.158
12.10
1.21
45.19
3.42
666
750
1.847328
AATTCATTTCCCGGTCACCC
58.153
50.000
0.00
0.00
0.00
4.61
717
801
1.519455
GACGAGAAGGTGGCGGATG
60.519
63.158
0.00
0.00
0.00
3.51
803
911
2.996621
CACTTGGCCGTCAAAAACAAAA
59.003
40.909
0.00
0.00
34.56
2.44
804
912
2.611518
CACTTGGCCGTCAAAAACAAA
58.388
42.857
0.00
0.00
34.56
2.83
807
915
0.249280
CCCACTTGGCCGTCAAAAAC
60.249
55.000
0.00
0.00
34.56
2.43
1006
1133
0.953471
TGTACCGGACATGTGCAAGC
60.953
55.000
18.05
4.90
31.20
4.01
1015
1142
1.174783
GCTCTCTCTTGTACCGGACA
58.825
55.000
9.46
5.40
35.78
4.02
1102
1249
1.407979
CTACGAACTACCAATCCGGCT
59.592
52.381
0.00
0.00
39.03
5.52
1110
1261
1.471119
CTCCCAGCTACGAACTACCA
58.529
55.000
0.00
0.00
0.00
3.25
1113
1264
0.627451
TCCCTCCCAGCTACGAACTA
59.373
55.000
0.00
0.00
0.00
2.24
1116
1267
1.381327
CCTCCCTCCCAGCTACGAA
60.381
63.158
0.00
0.00
0.00
3.85
1202
1357
3.781770
GAGGCGCATGTCCTCCTCG
62.782
68.421
19.38
4.04
43.32
4.63
1344
1505
5.828299
ATCAGTCGAGTTCTCTCTTAAGG
57.172
43.478
1.85
0.00
38.45
2.69
1374
1536
1.741145
ACCTGTCGAACCAAAACACAC
59.259
47.619
0.00
0.00
0.00
3.82
1542
1704
1.608590
CTTCAGGGTGTTGCAATCGTT
59.391
47.619
0.59
0.00
0.00
3.85
1543
1705
1.202758
TCTTCAGGGTGTTGCAATCGT
60.203
47.619
0.59
0.00
0.00
3.73
1544
1706
1.522668
TCTTCAGGGTGTTGCAATCG
58.477
50.000
0.59
0.00
0.00
3.34
1545
1707
3.858503
GCTTTCTTCAGGGTGTTGCAATC
60.859
47.826
0.59
0.00
0.00
2.67
1546
1708
2.036346
GCTTTCTTCAGGGTGTTGCAAT
59.964
45.455
0.59
0.00
0.00
3.56
1552
1714
1.140312
TGGAGCTTTCTTCAGGGTGT
58.860
50.000
0.00
0.00
0.00
4.16
1573
1735
3.189910
AGTTGATCACACATGACACATGC
59.810
43.478
0.00
0.00
37.79
4.06
1887
2068
4.673841
GCTCAAATTCTAGTTCCTTGCTGC
60.674
45.833
0.00
0.00
0.00
5.25
1948
2135
0.247460
CCAGAAGCATGTCGAGGTCA
59.753
55.000
0.00
0.00
0.00
4.02
1963
2150
1.331399
TGTTGGTGACCGTGTCCAGA
61.331
55.000
0.00
0.00
32.63
3.86
1972
2159
3.022287
CAGTGCGTGTTGGTGACC
58.978
61.111
0.00
0.00
0.00
4.02
2077
2264
3.909312
GGCACGATGTCGATCTCG
58.091
61.111
15.40
15.40
43.02
4.04
2209
2405
1.795177
CTTTCCGTCGTCGTCGTCC
60.795
63.158
10.76
0.00
38.33
4.79
2419
2633
2.396590
TCGGGATGTTTGCTAGAACC
57.603
50.000
0.00
0.00
0.00
3.62
2442
2656
5.491982
GGCGGTGATGGAGATCTTATAAAT
58.508
41.667
0.00
0.00
0.00
1.40
2444
2658
3.260884
GGGCGGTGATGGAGATCTTATAA
59.739
47.826
0.00
0.00
0.00
0.98
2448
2662
1.832912
GGGCGGTGATGGAGATCTT
59.167
57.895
0.00
0.00
0.00
2.40
2456
2670
4.221422
ATCGGACGGGCGGTGATG
62.221
66.667
1.11
0.00
0.00
3.07
2457
2671
3.912907
GATCGGACGGGCGGTGAT
61.913
66.667
1.11
0.00
0.00
3.06
2459
2673
4.570663
GAGATCGGACGGGCGGTG
62.571
72.222
1.11
0.00
0.00
4.94
2460
2674
2.898920
TAAGAGATCGGACGGGCGGT
62.899
60.000
0.00
0.00
0.00
5.68
2461
2675
2.131294
CTAAGAGATCGGACGGGCGG
62.131
65.000
0.00
0.00
0.00
6.13
2462
2676
1.283181
CTAAGAGATCGGACGGGCG
59.717
63.158
0.00
0.00
0.00
6.13
2463
2677
0.745468
AACTAAGAGATCGGACGGGC
59.255
55.000
0.00
0.00
0.00
6.13
2464
2678
3.881688
TCTAAACTAAGAGATCGGACGGG
59.118
47.826
0.00
0.00
0.00
5.28
2482
2701
2.159894
CGATCGCGTTGCTTGTTTCTAA
60.160
45.455
5.77
0.00
0.00
2.10
2589
2808
1.529865
GTCTTCGTGCTGGGTTTGTAC
59.470
52.381
0.00
0.00
0.00
2.90
2682
2906
1.334556
AGTCGCAGTGTGTACAACGTA
59.665
47.619
0.00
0.00
0.00
3.57
2740
2964
3.564053
ACCTTGACCCGTTTTTGACTA
57.436
42.857
0.00
0.00
0.00
2.59
2978
3207
2.555199
CAGCGAATGGGAAAGGTAGAG
58.445
52.381
0.00
0.00
0.00
2.43
3148
3377
2.163601
GACCCGGCCGTAACTTGTCT
62.164
60.000
26.12
0.00
0.00
3.41
3235
3465
4.095211
AGTGGTACTCTAGTTTCTTCCCC
58.905
47.826
0.00
0.00
0.00
4.81
3296
3532
2.609459
GCCATAGTCCATCGACAACAAG
59.391
50.000
0.00
0.00
41.87
3.16
3298
3534
1.134521
GGCCATAGTCCATCGACAACA
60.135
52.381
0.00
0.00
41.87
3.33
3318
3561
0.036164
TCCACCACGTGAGATTTGGG
59.964
55.000
19.30
7.36
35.23
4.12
3349
3592
1.335597
CGCGGAATATTCTACGAGGCA
60.336
52.381
19.36
0.00
0.00
4.75
3357
3600
1.371558
GAGGGGCGCGGAATATTCT
59.628
57.895
14.95
0.00
0.00
2.40
3370
3613
1.280457
ACTTCAGCTTAGGTGAGGGG
58.720
55.000
23.53
15.55
40.56
4.79
3410
3653
7.254556
CGCTATGCTTGATGATGTTCTTCTAAA
60.255
37.037
0.00
0.00
0.00
1.85
3413
3656
4.510711
CGCTATGCTTGATGATGTTCTTCT
59.489
41.667
0.00
0.00
0.00
2.85
3451
3697
3.202906
CGGTATCGGTGGATGACAAAAT
58.797
45.455
0.00
0.00
34.00
1.82
3566
3977
5.445939
CGGGAAATAAGAAATCGTGTCACAG
60.446
44.000
3.42
0.00
0.00
3.66
3573
3984
4.581868
TGTTCCGGGAAATAAGAAATCGT
58.418
39.130
11.82
0.00
0.00
3.73
3574
3985
5.353123
TCTTGTTCCGGGAAATAAGAAATCG
59.647
40.000
24.29
8.38
30.04
3.34
3576
3987
6.246163
AGTCTTGTTCCGGGAAATAAGAAAT
58.754
36.000
26.44
19.45
32.73
2.17
3599
4012
6.529125
AGATGAATTTTATTGCGCTTGTGAAG
59.471
34.615
9.73
0.00
0.00
3.02
3600
4013
6.389091
AGATGAATTTTATTGCGCTTGTGAA
58.611
32.000
9.73
0.00
0.00
3.18
3601
4014
5.953183
AGATGAATTTTATTGCGCTTGTGA
58.047
33.333
9.73
0.00
0.00
3.58
3602
4015
6.746822
TGTAGATGAATTTTATTGCGCTTGTG
59.253
34.615
9.73
0.00
0.00
3.33
3603
4016
6.747280
GTGTAGATGAATTTTATTGCGCTTGT
59.253
34.615
9.73
0.00
0.00
3.16
3604
4017
6.968904
AGTGTAGATGAATTTTATTGCGCTTG
59.031
34.615
9.73
0.00
0.00
4.01
3605
4018
6.968904
CAGTGTAGATGAATTTTATTGCGCTT
59.031
34.615
9.73
0.00
0.00
4.68
3607
4020
5.682862
CCAGTGTAGATGAATTTTATTGCGC
59.317
40.000
0.00
0.00
0.00
6.09
3608
4021
7.015226
TCCAGTGTAGATGAATTTTATTGCG
57.985
36.000
0.00
0.00
0.00
4.85
3609
4022
7.989826
ACTCCAGTGTAGATGAATTTTATTGC
58.010
34.615
0.00
0.00
0.00
3.56
3646
4060
5.954150
AGATTAGCCAGTGTGGATGATTTTT
59.046
36.000
0.00
0.00
40.96
1.94
3650
4064
4.785346
AAGATTAGCCAGTGTGGATGAT
57.215
40.909
0.00
0.00
40.96
2.45
3676
4091
0.334676
ATCCTTCCGGCCCATCAAAA
59.665
50.000
0.00
0.00
0.00
2.44
3677
4092
0.334676
AATCCTTCCGGCCCATCAAA
59.665
50.000
0.00
0.00
0.00
2.69
3687
4102
5.878116
TGGTTAGATGTGTTAAATCCTTCCG
59.122
40.000
0.00
0.00
0.00
4.30
3701
4116
1.072266
TTGGCCCAGTGGTTAGATGT
58.928
50.000
8.74
0.00
0.00
3.06
3722
4137
7.279981
TCGGAATACAATTCTGTTGTCCATAAG
59.720
37.037
8.03
0.00
37.23
1.73
3723
4138
7.065324
GTCGGAATACAATTCTGTTGTCCATAA
59.935
37.037
8.03
0.00
37.23
1.90
3724
4139
6.537301
GTCGGAATACAATTCTGTTGTCCATA
59.463
38.462
8.03
0.00
37.23
2.74
3725
4140
5.354234
GTCGGAATACAATTCTGTTGTCCAT
59.646
40.000
8.03
0.00
37.23
3.41
3726
4141
4.693566
GTCGGAATACAATTCTGTTGTCCA
59.306
41.667
8.03
0.00
37.23
4.02
3727
4142
4.935808
AGTCGGAATACAATTCTGTTGTCC
59.064
41.667
8.03
0.00
36.96
4.02
3728
4143
6.481954
AAGTCGGAATACAATTCTGTTGTC
57.518
37.500
8.03
0.00
36.96
3.18
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.