Multiple sequence alignment - TraesCS2B01G465100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G465100 chr2B 100.000 6045 0 0 1 6045 659734210 659740254 0.000000e+00 11164.0
1 TraesCS2B01G465100 chr2B 79.950 808 92 38 6 767 487229260 487230043 1.150000e-146 531.0
2 TraesCS2B01G465100 chr2B 87.037 216 23 5 6 218 675506005 675506218 7.830000e-59 239.0
3 TraesCS2B01G465100 chr2B 83.562 219 26 6 248 460 759139479 759139265 4.780000e-46 196.0
4 TraesCS2B01G465100 chr2D 89.573 3069 213 55 513 3521 553893683 553896704 0.000000e+00 3795.0
5 TraesCS2B01G465100 chr2D 95.017 903 32 2 5156 6045 553899206 553900108 0.000000e+00 1406.0
6 TraesCS2B01G465100 chr2D 90.230 1044 71 13 4049 5068 553897306 553898342 0.000000e+00 1334.0
7 TraesCS2B01G465100 chr2D 90.440 523 20 9 3556 4050 553896704 553897224 0.000000e+00 662.0
8 TraesCS2B01G465100 chr2D 81.599 788 105 29 6 767 595389124 595389897 3.100000e-172 616.0
9 TraesCS2B01G465100 chr2D 83.385 644 68 24 143 765 474638491 474639116 1.470000e-155 560.0
10 TraesCS2B01G465100 chr2D 83.673 539 66 12 247 767 36547238 36546704 7.040000e-134 488.0
11 TraesCS2B01G465100 chr2A 87.150 3393 274 79 859 4180 694329670 694332971 0.000000e+00 3701.0
12 TraesCS2B01G465100 chr2A 84.103 390 48 10 4569 4948 694333491 694333876 1.240000e-96 364.0
13 TraesCS2B01G465100 chr2A 97.059 34 1 0 772 805 754571429 754571396 2.350000e-04 58.4
14 TraesCS2B01G465100 chr7D 81.242 805 103 27 5 767 119561761 119560963 1.860000e-169 606.0
15 TraesCS2B01G465100 chr7D 83.609 665 71 24 128 767 589281768 589282419 1.880000e-164 590.0
16 TraesCS2B01G465100 chr6D 80.645 806 101 29 13 767 402411983 402412784 1.890000e-159 573.0
17 TraesCS2B01G465100 chr6D 78.587 467 45 18 6 429 78776091 78776545 2.160000e-64 257.0
18 TraesCS2B01G465100 chr1B 79.554 807 109 31 6 770 617268020 617267228 5.370000e-145 525.0
19 TraesCS2B01G465100 chr1B 81.081 222 32 5 245 459 138850718 138850500 1.040000e-37 169.0
20 TraesCS2B01G465100 chr1D 81.886 668 70 29 143 767 58616929 58617588 3.230000e-142 516.0
21 TraesCS2B01G465100 chr5A 79.280 806 107 34 6 767 616441511 616442300 5.410000e-140 508.0
22 TraesCS2B01G465100 chr3B 83.969 524 66 7 263 770 146297296 146296775 2.530000e-133 486.0
23 TraesCS2B01G465100 chr4D 79.750 721 88 32 83 767 8881280 8881978 2.550000e-128 470.0
24 TraesCS2B01G465100 chr4D 82.834 501 65 13 282 767 359744403 359744897 4.330000e-116 429.0
25 TraesCS2B01G465100 chr4D 83.401 247 31 8 6 245 471272968 471273211 2.840000e-53 220.0
26 TraesCS2B01G465100 chr7B 78.209 592 78 28 6 559 136050869 136051447 1.260000e-86 331.0
27 TraesCS2B01G465100 chr4B 82.591 247 38 3 6 247 582744127 582743881 4.750000e-51 213.0
28 TraesCS2B01G465100 chr5B 75.426 411 61 19 86 460 282704698 282704292 4.850000e-36 163.0
29 TraesCS2B01G465100 chr3D 79.909 219 32 6 245 453 19905989 19906205 3.770000e-32 150.0
30 TraesCS2B01G465100 chr1A 80.882 204 22 10 245 434 498611970 498612170 1.760000e-30 145.0
31 TraesCS2B01G465100 chr7A 79.111 225 31 10 245 461 689326737 689326953 2.270000e-29 141.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G465100 chr2B 659734210 659740254 6044 False 11164.00 11164 100.0000 1 6045 1 chr2B.!!$F2 6044
1 TraesCS2B01G465100 chr2B 487229260 487230043 783 False 531.00 531 79.9500 6 767 1 chr2B.!!$F1 761
2 TraesCS2B01G465100 chr2D 553893683 553900108 6425 False 1799.25 3795 91.3150 513 6045 4 chr2D.!!$F3 5532
3 TraesCS2B01G465100 chr2D 595389124 595389897 773 False 616.00 616 81.5990 6 767 1 chr2D.!!$F2 761
4 TraesCS2B01G465100 chr2D 474638491 474639116 625 False 560.00 560 83.3850 143 765 1 chr2D.!!$F1 622
5 TraesCS2B01G465100 chr2D 36546704 36547238 534 True 488.00 488 83.6730 247 767 1 chr2D.!!$R1 520
6 TraesCS2B01G465100 chr2A 694329670 694333876 4206 False 2032.50 3701 85.6265 859 4948 2 chr2A.!!$F1 4089
7 TraesCS2B01G465100 chr7D 119560963 119561761 798 True 606.00 606 81.2420 5 767 1 chr7D.!!$R1 762
8 TraesCS2B01G465100 chr7D 589281768 589282419 651 False 590.00 590 83.6090 128 767 1 chr7D.!!$F1 639
9 TraesCS2B01G465100 chr6D 402411983 402412784 801 False 573.00 573 80.6450 13 767 1 chr6D.!!$F2 754
10 TraesCS2B01G465100 chr1B 617267228 617268020 792 True 525.00 525 79.5540 6 770 1 chr1B.!!$R2 764
11 TraesCS2B01G465100 chr1D 58616929 58617588 659 False 516.00 516 81.8860 143 767 1 chr1D.!!$F1 624
12 TraesCS2B01G465100 chr5A 616441511 616442300 789 False 508.00 508 79.2800 6 767 1 chr5A.!!$F1 761
13 TraesCS2B01G465100 chr3B 146296775 146297296 521 True 486.00 486 83.9690 263 770 1 chr3B.!!$R1 507
14 TraesCS2B01G465100 chr4D 8881280 8881978 698 False 470.00 470 79.7500 83 767 1 chr4D.!!$F1 684
15 TraesCS2B01G465100 chr7B 136050869 136051447 578 False 331.00 331 78.2090 6 559 1 chr7B.!!$F1 553

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
837 1343 0.106519 CACTGGGGGCTTAGAATGGG 60.107 60.0 0.00 0.00 0.00 4.00 F
1210 1723 0.034059 CGCTCATCTATCGCCCCTTT 59.966 55.0 0.00 0.00 0.00 3.11 F
1560 2074 0.034616 GGGAATCAGATCTGAGGCGG 59.965 60.0 28.26 0.13 43.61 6.13 F
2941 3516 0.179234 TCACACGGCCACTTTCTTCA 59.821 50.0 2.24 0.00 0.00 3.02 F
4670 5550 0.035056 AAGCGGTCTGGGATGGAAAG 60.035 55.0 0.00 0.00 0.00 2.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2708 3269 0.244721 GGACTGAAAATGCAGGCACC 59.755 55.0 0.00 0.0 45.97 5.01 R
2850 3417 1.571955 TGCAGGCAGATCTTACCAGA 58.428 50.0 12.96 0.0 0.00 3.86 R
3513 4110 2.973694 TCCGTACTTCCAATAGTGGC 57.026 50.0 3.77 0.0 45.54 5.01 R
4871 5759 0.387622 CGACATGCCAAACTTGCAGG 60.388 55.0 0.00 0.0 45.38 4.85 R
5534 7208 0.663688 CTACTGCGCTCTATCACCGT 59.336 55.0 9.73 0.0 0.00 4.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 1.069906 CGGTTTTGCTTTCACGAGAGG 60.070 52.381 0.00 0.00 0.00 3.69
72 73 1.727213 CGTGACTCTCGTAAACGGGAC 60.727 57.143 0.00 0.00 44.94 4.46
77 78 2.101249 ACTCTCGTAAACGGGACAAACA 59.899 45.455 0.00 0.00 44.94 2.83
82 83 3.626670 TCGTAAACGGGACAAACATGTTT 59.373 39.130 18.13 18.13 40.29 2.83
83 84 4.096081 TCGTAAACGGGACAAACATGTTTT 59.904 37.500 21.10 12.50 40.29 2.43
84 85 4.799428 CGTAAACGGGACAAACATGTTTTT 59.201 37.500 21.10 15.39 34.80 1.94
108 109 3.226884 TTTTTCCTTCCGCGAGAGG 57.773 52.632 18.22 18.22 0.00 3.69
110 111 2.107041 TTTTCCTTCCGCGAGAGGCA 62.107 55.000 19.15 8.97 43.84 4.75
112 113 4.069232 CCTTCCGCGAGAGGCACA 62.069 66.667 8.23 0.00 43.84 4.57
118 119 1.205064 CGCGAGAGGCACAGTTTTG 59.795 57.895 0.00 0.00 43.84 2.44
122 123 1.334869 CGAGAGGCACAGTTTTGCTTT 59.665 47.619 0.00 0.00 42.56 3.51
125 126 1.333619 GAGGCACAGTTTTGCTTTCGA 59.666 47.619 0.00 0.00 42.56 3.71
136 137 1.674359 TGCTTTCGAAAGAGGCACAA 58.326 45.000 35.88 12.43 42.51 3.33
177 178 2.549282 CCGTGCCACTCGAAAACG 59.451 61.111 0.00 0.00 0.00 3.60
178 179 1.952133 CCGTGCCACTCGAAAACGA 60.952 57.895 0.00 0.00 36.38 3.85
179 180 1.492319 CCGTGCCACTCGAAAACGAA 61.492 55.000 0.00 0.00 36.38 3.85
180 181 0.302288 CGTGCCACTCGAAAACGAAA 59.698 50.000 0.00 0.00 36.38 3.46
181 182 1.267632 CGTGCCACTCGAAAACGAAAA 60.268 47.619 0.00 0.00 36.38 2.29
182 183 2.788030 GTGCCACTCGAAAACGAAAAA 58.212 42.857 0.00 0.00 0.00 1.94
219 220 4.367039 TTTTTCCATTCCGAGAGAGGTT 57.633 40.909 0.00 0.00 0.00 3.50
220 221 3.334583 TTTCCATTCCGAGAGAGGTTG 57.665 47.619 0.00 0.00 0.00 3.77
221 222 0.537188 TCCATTCCGAGAGAGGTTGC 59.463 55.000 0.00 0.00 0.00 4.17
222 223 0.462759 CCATTCCGAGAGAGGTTGCC 60.463 60.000 0.00 0.00 0.00 4.52
223 224 0.539051 CATTCCGAGAGAGGTTGCCT 59.461 55.000 0.00 0.00 36.03 4.75
231 232 3.760035 GAGGTTGCCTCCGCGAGA 61.760 66.667 8.23 1.68 44.36 4.04
232 233 3.708220 GAGGTTGCCTCCGCGAGAG 62.708 68.421 8.23 12.82 44.36 3.20
233 234 4.070552 GGTTGCCTCCGCGAGAGT 62.071 66.667 8.23 0.00 41.47 3.24
234 235 2.507324 GTTGCCTCCGCGAGAGTC 60.507 66.667 8.23 2.81 41.47 3.36
235 236 4.116328 TTGCCTCCGCGAGAGTCG 62.116 66.667 8.23 2.18 41.47 4.18
244 245 3.470567 CGAGAGTCGCCGTTGTGC 61.471 66.667 0.71 0.00 31.14 4.57
259 260 1.282875 GTGCGTGCCTCTTGGAAAC 59.717 57.895 0.00 0.00 34.57 2.78
261 262 1.959226 GCGTGCCTCTTGGAAACGA 60.959 57.895 12.58 0.00 43.27 3.85
311 744 0.249953 TCGCAAGAGGCACGGTTTTA 60.250 50.000 0.00 0.00 45.01 1.52
317 750 1.418637 AGAGGCACGGTTTTACTTCCA 59.581 47.619 0.00 0.00 0.00 3.53
341 774 1.398390 GAGGCATAGTTGTGCTTTCGG 59.602 52.381 0.95 0.00 44.45 4.30
473 922 2.616510 CGTGCCTCTTTCAGAAAGGGAT 60.617 50.000 22.65 0.00 41.66 3.85
496 945 3.253955 CCGTGCTCTCGGTTTTGG 58.746 61.111 2.53 0.00 44.77 3.28
585 1061 1.115467 ATCTCAACGCGAGGAATCCT 58.885 50.000 15.93 0.00 42.55 3.24
630 1107 2.856557 GGACGCACGGTTAAGAGATAAC 59.143 50.000 0.00 0.00 42.68 1.89
690 1170 2.645838 ACAGATTGTGACAAGTGGCT 57.354 45.000 3.74 0.00 0.00 4.75
691 1171 2.936202 ACAGATTGTGACAAGTGGCTT 58.064 42.857 3.74 0.00 0.00 4.35
712 1197 0.170784 CATGCAGCACGCCATTTGTA 59.829 50.000 0.00 0.00 41.33 2.41
721 1206 0.881118 CGCCATTTGTAGCAACCTGT 59.119 50.000 0.00 0.00 0.00 4.00
767 1254 8.533153 GCAACGAGTATTCTTTAACTAGTGATC 58.467 37.037 0.00 0.00 32.78 2.92
770 1257 9.175312 ACGAGTATTCTTTAACTAGTGATCTCA 57.825 33.333 0.00 0.00 31.48 3.27
779 1266 9.549509 CTTTAACTAGTGATCTCATAGTATCGC 57.450 37.037 0.00 0.00 33.71 4.58
781 1268 7.753309 AACTAGTGATCTCATAGTATCGCTT 57.247 36.000 0.00 0.00 41.77 4.68
782 1269 8.850007 AACTAGTGATCTCATAGTATCGCTTA 57.150 34.615 0.00 0.00 41.77 3.09
783 1270 8.850007 ACTAGTGATCTCATAGTATCGCTTAA 57.150 34.615 0.00 0.00 41.77 1.85
784 1271 9.456147 ACTAGTGATCTCATAGTATCGCTTAAT 57.544 33.333 0.00 0.00 41.77 1.40
785 1272 9.715123 CTAGTGATCTCATAGTATCGCTTAATG 57.285 37.037 3.96 0.00 41.77 1.90
803 1290 0.579630 TGCGATAAATAGCAACCGCG 59.420 50.000 0.00 0.00 44.76 6.46
821 1327 1.736032 GCGCTAAACGGACTGATCACT 60.736 52.381 0.00 0.00 43.93 3.41
822 1328 1.920574 CGCTAAACGGACTGATCACTG 59.079 52.381 0.00 0.00 38.44 3.66
827 1333 2.592308 GGACTGATCACTGGGGGC 59.408 66.667 0.00 0.00 0.00 5.80
828 1334 1.997874 GGACTGATCACTGGGGGCT 60.998 63.158 0.00 0.00 0.00 5.19
830 1336 1.204146 GACTGATCACTGGGGGCTTA 58.796 55.000 0.00 0.00 0.00 3.09
831 1337 1.139853 GACTGATCACTGGGGGCTTAG 59.860 57.143 0.00 0.00 0.00 2.18
832 1338 1.273838 ACTGATCACTGGGGGCTTAGA 60.274 52.381 0.00 0.00 0.00 2.10
834 1340 2.441001 CTGATCACTGGGGGCTTAGAAT 59.559 50.000 0.00 0.00 0.00 2.40
835 1341 2.173356 TGATCACTGGGGGCTTAGAATG 59.827 50.000 0.00 0.00 0.00 2.67
837 1343 0.106519 CACTGGGGGCTTAGAATGGG 60.107 60.000 0.00 0.00 0.00 4.00
838 1344 1.152673 CTGGGGGCTTAGAATGGGC 60.153 63.158 0.00 0.00 0.00 5.36
839 1345 1.622442 TGGGGGCTTAGAATGGGCT 60.622 57.895 0.00 0.00 0.00 5.19
840 1346 1.151679 GGGGGCTTAGAATGGGCTC 59.848 63.158 0.00 0.00 0.00 4.70
841 1347 1.356494 GGGGGCTTAGAATGGGCTCT 61.356 60.000 0.00 0.00 0.00 4.09
842 1348 0.109532 GGGGCTTAGAATGGGCTCTC 59.890 60.000 0.00 0.00 0.00 3.20
843 1349 0.250081 GGGCTTAGAATGGGCTCTCG 60.250 60.000 0.00 0.00 0.00 4.04
844 1350 0.882484 GGCTTAGAATGGGCTCTCGC 60.882 60.000 0.00 0.00 0.00 5.03
846 1352 1.863267 CTTAGAATGGGCTCTCGCAG 58.137 55.000 0.00 0.00 38.59 5.18
847 1353 1.137872 CTTAGAATGGGCTCTCGCAGT 59.862 52.381 0.00 0.00 38.59 4.40
848 1354 0.461548 TAGAATGGGCTCTCGCAGTG 59.538 55.000 0.00 0.00 38.59 3.66
849 1355 1.817099 GAATGGGCTCTCGCAGTGG 60.817 63.158 0.00 0.00 38.59 4.00
850 1356 3.984193 AATGGGCTCTCGCAGTGGC 62.984 63.158 0.00 4.11 38.59 5.01
941 1454 3.991051 CCACGCCAGTCCAGTCGT 61.991 66.667 0.00 0.00 35.35 4.34
957 1470 4.699522 GTGTCGCACTCCACCCCC 62.700 72.222 3.20 0.00 0.00 5.40
996 1509 1.600916 AGCACCAAGAAGGGAACGC 60.601 57.895 0.00 0.00 43.89 4.84
1162 1675 4.148825 CCCCTTCTCCGTGAGCCG 62.149 72.222 0.00 0.00 0.00 5.52
1171 1684 3.382832 CGTGAGCCGACCTCCCTT 61.383 66.667 0.00 0.00 39.98 3.95
1208 1721 2.279069 CCGCTCATCTATCGCCCCT 61.279 63.158 0.00 0.00 0.00 4.79
1210 1723 0.034059 CGCTCATCTATCGCCCCTTT 59.966 55.000 0.00 0.00 0.00 3.11
1240 1753 2.400269 AAAACCCTTGCCGCCTACGA 62.400 55.000 0.00 0.00 43.93 3.43
1279 1792 2.564553 ATCTGAACTCCCGCGTGCTC 62.565 60.000 4.92 0.00 0.00 4.26
1447 1960 0.373716 CACGCGCTGGTTATCCTTTC 59.626 55.000 5.73 0.00 34.23 2.62
1455 1969 4.379499 CGCTGGTTATCCTTTCAGTTTTCC 60.379 45.833 0.00 0.00 34.23 3.13
1463 1977 4.461198 TCCTTTCAGTTTTCCTTCACTCC 58.539 43.478 0.00 0.00 0.00 3.85
1491 2005 2.609459 GGCTGTACGAATCTGATGGTTG 59.391 50.000 0.00 0.00 0.00 3.77
1560 2074 0.034616 GGGAATCAGATCTGAGGCGG 59.965 60.000 28.26 0.13 43.61 6.13
1601 2115 5.360649 ACTCTCCTCTTTGCCCTTAATAC 57.639 43.478 0.00 0.00 0.00 1.89
1630 2154 2.665185 GTGTGGTGTCTCACGGCC 60.665 66.667 0.00 0.00 40.31 6.13
1669 2193 4.041444 CAGGATATCAAAAGGAGGGAGGAG 59.959 50.000 4.83 0.00 0.00 3.69
1731 2263 7.587757 GTGTCAATTGTGTTTCAGTTATGAGTC 59.412 37.037 5.13 0.00 36.61 3.36
1816 2358 1.371467 TGGAGGAGAAGAATTGGCCA 58.629 50.000 0.00 0.00 0.00 5.36
1919 2461 1.401905 GCTGGCTTGGTATGTACTTGC 59.598 52.381 0.00 0.00 0.00 4.01
1931 2473 1.967779 TGTACTTGCTGACTGCTGGTA 59.032 47.619 5.87 6.01 43.37 3.25
1967 2509 7.416154 TTTTTGGTATCACTCTAGTTTGTCG 57.584 36.000 0.00 0.00 0.00 4.35
1997 2539 4.654091 ATGCAATTGTGGTGTTATAGGC 57.346 40.909 7.40 0.00 0.00 3.93
2014 2556 9.283768 TGTTATAGGCTGTAAATATGGTTCATG 57.716 33.333 5.21 0.00 0.00 3.07
2023 2565 4.785346 AATATGGTTCATGTCAGAGGCT 57.215 40.909 0.00 0.00 0.00 4.58
2027 2569 2.286872 GGTTCATGTCAGAGGCTCATG 58.713 52.381 18.26 12.11 39.87 3.07
2043 2585 4.454678 GCTCATGGTCATGATAGTTTCCA 58.545 43.478 13.26 0.01 45.74 3.53
2083 2628 0.809385 CAGGAATTGTGCTCTGCCTG 59.191 55.000 0.00 0.00 37.21 4.85
2148 2697 3.009143 GGAGGTGGGTTTTCATCACTACT 59.991 47.826 0.00 0.00 0.00 2.57
2151 2700 5.557866 AGGTGGGTTTTCATCACTACTTAC 58.442 41.667 0.00 0.00 0.00 2.34
2180 2729 2.235016 GGGTGTTCTTGTACATTGGCA 58.765 47.619 0.00 0.00 0.00 4.92
2192 2741 1.136305 ACATTGGCAGATGCTGAATGC 59.864 47.619 20.47 0.00 40.86 3.56
2194 2743 2.423446 TTGGCAGATGCTGAATGCTA 57.577 45.000 4.59 0.00 43.37 3.49
2199 2748 2.484651 GCAGATGCTGAATGCTAGGATG 59.515 50.000 0.00 0.00 43.37 3.51
2317 2866 4.864704 TCGTGCAATGAGGTATGCTATA 57.135 40.909 0.00 0.00 42.97 1.31
2318 2867 5.405935 TCGTGCAATGAGGTATGCTATAT 57.594 39.130 0.00 0.00 42.97 0.86
2338 2887 7.148239 GCTATATCATGGTACCATTTTAGCACC 60.148 40.741 29.04 14.66 33.90 5.01
2350 2899 3.906720 TTTAGCACCTCCACCTATCAC 57.093 47.619 0.00 0.00 0.00 3.06
2362 2911 4.352595 TCCACCTATCACTGGAAAAAGGAA 59.647 41.667 0.00 0.00 33.39 3.36
2367 2916 5.066505 CCTATCACTGGAAAAAGGAAATCGG 59.933 44.000 0.00 0.00 0.00 4.18
2415 2974 3.057315 GCTTTCCAGCTATGCACAAAGAA 60.057 43.478 0.00 0.00 43.51 2.52
2416 2975 4.479619 CTTTCCAGCTATGCACAAAGAAC 58.520 43.478 0.00 0.00 0.00 3.01
2489 3049 7.174253 AGCATTGTTTCCATCTAACGAAACTAA 59.826 33.333 12.38 6.96 45.22 2.24
2496 3056 9.947433 TTTCCATCTAACGAAACTAATAAAGGA 57.053 29.630 0.00 0.00 0.00 3.36
2514 3074 8.918202 ATAAAGGACAGTTTATGTGAGTTCAA 57.082 30.769 0.00 0.00 44.17 2.69
2540 3100 6.704310 ACTGCTGCATAATTTCCTTGAAAAT 58.296 32.000 1.31 0.00 35.11 1.82
2617 3178 3.068881 GTGGACCTGCACCAGCTA 58.931 61.111 0.00 0.00 42.74 3.32
2618 3179 1.078848 GTGGACCTGCACCAGCTAG 60.079 63.158 0.00 0.00 42.74 3.42
2619 3180 2.293318 TGGACCTGCACCAGCTAGG 61.293 63.158 0.00 0.00 41.71 3.02
2620 3181 1.990060 GGACCTGCACCAGCTAGGA 60.990 63.158 6.48 0.00 39.75 2.94
2668 3229 6.417258 TCATGTATCAGTGACCAATTGATGT 58.583 36.000 7.12 0.00 33.81 3.06
2677 3238 6.019559 CAGTGACCAATTGATGTGTATAGTCG 60.020 42.308 7.12 0.00 0.00 4.18
2685 3246 9.516314 CAATTGATGTGTATAGTCGTTCTAAGA 57.484 33.333 0.00 0.00 31.94 2.10
2699 3260 9.121658 AGTCGTTCTAAGATGATAGTATGACAA 57.878 33.333 12.66 0.00 39.63 3.18
2712 3273 9.109393 TGATAGTATGACAAATTTTAGAGGTGC 57.891 33.333 0.00 0.00 0.00 5.01
2737 3299 6.705381 CCTGCATTTTCAGTCCAATTGTTTAA 59.295 34.615 4.43 0.00 32.32 1.52
2738 3300 7.307337 CCTGCATTTTCAGTCCAATTGTTTAAC 60.307 37.037 4.43 0.00 32.32 2.01
2740 3302 7.550551 TGCATTTTCAGTCCAATTGTTTAACAA 59.449 29.630 13.12 13.12 42.95 2.83
2741 3303 8.063630 GCATTTTCAGTCCAATTGTTTAACAAG 58.936 33.333 15.83 3.68 41.94 3.16
2742 3304 9.311916 CATTTTCAGTCCAATTGTTTAACAAGA 57.688 29.630 15.83 5.54 41.94 3.02
2743 3305 8.925161 TTTTCAGTCCAATTGTTTAACAAGAG 57.075 30.769 15.83 10.24 41.94 2.85
2758 3325 7.681939 TTAACAAGAGAAAACTGAACTGTGT 57.318 32.000 0.00 0.00 0.00 3.72
2850 3417 6.739331 TTTGGATGGTTTTTCCTGTGTTAT 57.261 33.333 0.00 0.00 37.07 1.89
2885 3452 6.432783 TCTGCCTGCAAAGCTTATTTAACTTA 59.567 34.615 0.00 0.00 0.00 2.24
2906 3479 7.920738 ACTTACTCTTGACATTTCAACTGTTC 58.079 34.615 0.00 0.00 36.79 3.18
2934 3509 4.481368 TTATTCTTATCACACGGCCACT 57.519 40.909 2.24 0.00 0.00 4.00
2937 3512 2.695359 TCTTATCACACGGCCACTTTC 58.305 47.619 2.24 0.00 0.00 2.62
2939 3514 2.851263 TATCACACGGCCACTTTCTT 57.149 45.000 2.24 0.00 0.00 2.52
2940 3515 1.523758 ATCACACGGCCACTTTCTTC 58.476 50.000 2.24 0.00 0.00 2.87
2941 3516 0.179234 TCACACGGCCACTTTCTTCA 59.821 50.000 2.24 0.00 0.00 3.02
3038 3619 5.050567 GGGAAATCATTAACGTAAGCTACCG 60.051 44.000 3.62 3.62 45.62 4.02
3054 3635 5.731591 AGCTACCGCTACTTTTATTCAGTT 58.268 37.500 0.00 0.00 46.79 3.16
3092 3681 6.266558 ACTGTGGTAAATTTCTATTGCACCAA 59.733 34.615 8.03 0.74 39.49 3.67
3124 3713 1.782028 GAACAACTGGCCACGACCAC 61.782 60.000 0.00 0.00 35.33 4.16
3249 3838 5.683509 GCTTCCATAGTATTGAGACAGCTGT 60.684 44.000 21.88 21.88 0.00 4.40
3251 3840 7.603180 TTCCATAGTATTGAGACAGCTGTAT 57.397 36.000 21.73 18.43 0.00 2.29
3254 3843 8.144478 TCCATAGTATTGAGACAGCTGTATTTC 58.856 37.037 21.73 17.59 0.00 2.17
3272 3861 7.715657 TGTATTTCTGAATTGCTTGTTTCACT 58.284 30.769 0.00 0.00 0.00 3.41
3273 3862 8.845227 TGTATTTCTGAATTGCTTGTTTCACTA 58.155 29.630 0.00 0.00 0.00 2.74
3274 3863 9.334693 GTATTTCTGAATTGCTTGTTTCACTAG 57.665 33.333 0.00 0.00 0.00 2.57
3291 3880 6.791867 TCACTAGTATGTGCCTACAAGATT 57.208 37.500 0.00 0.00 40.84 2.40
3292 3881 6.573434 TCACTAGTATGTGCCTACAAGATTG 58.427 40.000 0.00 0.00 40.84 2.67
3322 3911 6.494893 AATTGTTTGCGTATGCTCTTCTAA 57.505 33.333 8.69 0.00 43.34 2.10
3332 3921 6.306837 GCGTATGCTCTTCTAACATGATCTAC 59.693 42.308 0.00 0.00 38.39 2.59
3376 3969 7.462109 CTGACTGACAGTTGAATATCTTAGC 57.538 40.000 10.01 0.00 41.30 3.09
3378 3971 7.559486 TGACTGACAGTTGAATATCTTAGCAT 58.441 34.615 10.01 0.00 0.00 3.79
3434 4027 2.674420 ACCAGTATGTATGTAGCCGGT 58.326 47.619 1.90 0.00 0.00 5.28
3436 4029 3.453353 ACCAGTATGTATGTAGCCGGTTT 59.547 43.478 1.90 0.00 0.00 3.27
3513 4110 9.650539 CCAATGTCTTCATCTATTCATAGGTAG 57.349 37.037 0.00 0.00 32.56 3.18
3551 4148 9.939802 AGTACGGAAGTTTCTTCTTAATTACAT 57.060 29.630 8.96 0.00 46.40 2.29
3644 4256 1.780309 TGGGGTGAGAACATTGTTCCT 59.220 47.619 22.70 12.17 0.00 3.36
3668 4284 0.673022 CACCTCCTTGCAGTGAGCTC 60.673 60.000 6.82 6.82 45.94 4.09
3683 4299 2.289382 TGAGCTCGACATGTTTTGCCTA 60.289 45.455 9.64 0.00 0.00 3.93
3700 4316 4.560128 TGCCTACGATCTCTTGAATATGC 58.440 43.478 0.00 0.00 0.00 3.14
3737 4353 9.886132 TTGAAGTAACTTTATCTCCAAGTATCC 57.114 33.333 0.00 0.00 33.12 2.59
3859 4475 6.256757 GGTTCTTCAGGTCAGAGATAATTTCG 59.743 42.308 0.00 0.00 0.00 3.46
3862 4478 4.686972 TCAGGTCAGAGATAATTTCGCAG 58.313 43.478 0.00 0.00 0.00 5.18
3863 4479 4.160439 TCAGGTCAGAGATAATTTCGCAGT 59.840 41.667 0.00 0.00 0.00 4.40
3951 4575 5.593786 TCATATACTGGTCATCTAGGGCAT 58.406 41.667 0.00 0.00 0.00 4.40
3978 4602 0.686769 AGGGGCTAGTAGGTGTTCCG 60.687 60.000 0.00 0.00 39.05 4.30
4102 4817 4.184079 TCTAGTAAACTTCGCCAAGACC 57.816 45.455 0.00 0.00 33.34 3.85
4131 4846 1.876322 CTTATAGCTGTGCCTCTGCC 58.124 55.000 0.00 0.00 41.02 4.85
4171 4917 6.148948 TGTCATAATTTTCTGCACGGAAAAG 58.851 36.000 19.10 8.68 44.75 2.27
4226 4972 7.538303 TGTGTAACATATGATGTGCTAGTTG 57.462 36.000 10.38 0.00 45.67 3.16
4231 4977 6.119240 ACATATGATGTGCTAGTTGCCTAT 57.881 37.500 10.38 0.00 43.01 2.57
4257 5003 5.365605 TGGGTGTCCGATAAAGATGTAGAAT 59.634 40.000 0.00 0.00 35.24 2.40
4278 5024 8.667076 AGAATTTGCAAAACTTCTAAGCATTT 57.333 26.923 21.09 6.00 34.87 2.32
4351 5097 3.473113 AGGTGGGCATCCAGTAAAAAT 57.527 42.857 0.45 0.00 45.05 1.82
4380 5126 0.906282 TGCTGGCTCCTGTGAGATCA 60.906 55.000 0.00 0.00 41.42 2.92
4382 5128 1.810794 GCTGGCTCCTGTGAGATCATG 60.811 57.143 0.00 0.00 41.42 3.07
4385 5131 1.070445 GGCTCCTGTGAGATCATGAGG 59.930 57.143 0.09 0.00 41.42 3.86
4389 5135 4.800249 GCTCCTGTGAGATCATGAGGATTC 60.800 50.000 0.09 0.00 41.42 2.52
4402 5148 6.136155 TCATGAGGATTCCTGTGATAGTACA 58.864 40.000 10.74 0.00 31.76 2.90
4428 5174 5.927819 TCTTTTTGTTTGGGCATCATTCTT 58.072 33.333 0.00 0.00 0.00 2.52
4453 5199 3.931468 TGGGCATGCAAATAAATGAAACG 59.069 39.130 21.36 0.00 0.00 3.60
4454 5200 3.932089 GGGCATGCAAATAAATGAAACGT 59.068 39.130 21.36 0.00 0.00 3.99
4544 5318 4.764679 TGTGTTTGGTCTGTTATCATGC 57.235 40.909 0.00 0.00 0.00 4.06
4560 5334 2.931969 TCATGCTACTTGTTCAGATGCG 59.068 45.455 0.00 0.00 0.00 4.73
4563 5337 2.480037 TGCTACTTGTTCAGATGCGTTG 59.520 45.455 0.00 0.00 0.00 4.10
4586 5466 7.324354 TGTGCGAGAATACAGTACTAATACA 57.676 36.000 0.00 0.00 33.30 2.29
4659 5539 0.107654 GGGCATAAGTGAAGCGGTCT 60.108 55.000 0.00 0.00 0.00 3.85
4670 5550 0.035056 AAGCGGTCTGGGATGGAAAG 60.035 55.000 0.00 0.00 0.00 2.62
4700 5580 5.051173 CGAAGTCTATAAGCAGCAGTGATTG 60.051 44.000 0.00 0.00 33.33 2.67
4751 5634 2.426738 TGTTCTGTTCTGCCAAAGGTTG 59.573 45.455 0.00 0.00 0.00 3.77
4757 5640 2.045561 TCTGCCAAAGGTTGTCGAAA 57.954 45.000 0.00 0.00 0.00 3.46
4846 5734 7.715249 GGGTGTTGAGATTCTTTATATGCTGTA 59.285 37.037 0.00 0.00 0.00 2.74
4867 5755 5.706833 TGTACTTCGTGTGTTATCTGGTAGA 59.293 40.000 0.00 0.00 0.00 2.59
4870 5758 5.652891 ACTTCGTGTGTTATCTGGTAGATCT 59.347 40.000 0.00 0.00 36.20 2.75
4871 5759 5.752892 TCGTGTGTTATCTGGTAGATCTC 57.247 43.478 0.00 0.00 36.20 2.75
4872 5760 4.579340 TCGTGTGTTATCTGGTAGATCTCC 59.421 45.833 0.00 1.01 36.20 3.71
4875 5763 4.342378 TGTGTTATCTGGTAGATCTCCTGC 59.658 45.833 0.00 0.00 36.20 4.85
4876 5764 4.342378 GTGTTATCTGGTAGATCTCCTGCA 59.658 45.833 0.00 0.00 36.20 4.41
4907 5795 5.445939 GCATGTCGGTGAACATTACAAGTAG 60.446 44.000 0.00 0.00 37.78 2.57
4914 5802 6.527023 CGGTGAACATTACAAGTAGTCAGTAG 59.473 42.308 0.00 0.00 0.00 2.57
4925 5818 7.934457 ACAAGTAGTCAGTAGTTAAACGAAGA 58.066 34.615 0.00 0.00 0.00 2.87
4926 5819 8.408601 ACAAGTAGTCAGTAGTTAAACGAAGAA 58.591 33.333 0.00 0.00 0.00 2.52
4927 5820 9.408069 CAAGTAGTCAGTAGTTAAACGAAGAAT 57.592 33.333 0.00 0.00 0.00 2.40
4995 5889 2.295885 GCTCTGCTATGTGCTTTGGAT 58.704 47.619 0.00 0.00 43.37 3.41
5006 5900 4.910195 TGTGCTTTGGATGACTAGATGTT 58.090 39.130 0.00 0.00 0.00 2.71
5007 5901 5.316167 TGTGCTTTGGATGACTAGATGTTT 58.684 37.500 0.00 0.00 0.00 2.83
5009 5903 5.182001 GTGCTTTGGATGACTAGATGTTTGT 59.818 40.000 0.00 0.00 0.00 2.83
5011 5905 6.939730 TGCTTTGGATGACTAGATGTTTGTTA 59.060 34.615 0.00 0.00 0.00 2.41
5017 5911 8.243426 TGGATGACTAGATGTTTGTTAAATTGC 58.757 33.333 0.00 0.00 0.00 3.56
5053 5947 1.626654 CGTCCGGTGTCACTTGATGC 61.627 60.000 0.00 0.00 0.00 3.91
5064 5958 4.507756 TGTCACTTGATGCGATGCTATTAC 59.492 41.667 0.00 0.00 0.00 1.89
5072 5988 8.552083 TTGATGCGATGCTATTACTGAATATT 57.448 30.769 0.00 0.00 0.00 1.28
5090 6006 3.915437 ATTTCCTGTTAACAGCCGTTG 57.085 42.857 27.05 14.74 42.47 4.10
5091 6007 0.948678 TTCCTGTTAACAGCCGTTGC 59.051 50.000 27.05 0.00 42.47 4.17
5110 6221 1.068474 CTTTAGGTGCGTTGGTCTCG 58.932 55.000 0.00 0.00 0.00 4.04
5131 6242 2.286833 GCTTGTGAGACGTGTTTGCTTA 59.713 45.455 0.00 0.00 0.00 3.09
5141 6252 3.435671 ACGTGTTTGCTTATAGTTGGAGC 59.564 43.478 0.00 0.00 36.95 4.70
5144 6255 3.440173 TGTTTGCTTATAGTTGGAGCTGC 59.560 43.478 0.00 0.00 37.32 5.25
5146 6257 1.221414 GCTTATAGTTGGAGCTGCGG 58.779 55.000 0.00 0.00 33.72 5.69
5150 6261 0.108138 ATAGTTGGAGCTGCGGTGTC 60.108 55.000 0.00 0.00 0.00 3.67
5151 6262 1.468506 TAGTTGGAGCTGCGGTGTCA 61.469 55.000 0.00 0.00 0.00 3.58
5152 6263 1.672356 GTTGGAGCTGCGGTGTCAT 60.672 57.895 0.00 0.00 0.00 3.06
5153 6264 1.672030 TTGGAGCTGCGGTGTCATG 60.672 57.895 0.00 0.00 0.00 3.07
5155 6266 1.812922 GGAGCTGCGGTGTCATGAG 60.813 63.158 0.00 0.00 0.00 2.90
5156 6267 1.216444 GAGCTGCGGTGTCATGAGA 59.784 57.895 0.00 0.00 0.00 3.27
5157 6268 1.079543 AGCTGCGGTGTCATGAGAC 60.080 57.895 14.43 14.43 45.19 3.36
5166 6277 2.460330 GTCATGAGACACCGCCTTG 58.540 57.895 0.00 0.00 44.34 3.61
5167 6278 0.037326 GTCATGAGACACCGCCTTGA 60.037 55.000 0.00 0.00 44.34 3.02
5168 6279 0.904649 TCATGAGACACCGCCTTGAT 59.095 50.000 0.00 0.00 0.00 2.57
5172 6843 1.412710 TGAGACACCGCCTTGATATCC 59.587 52.381 0.00 0.00 0.00 2.59
5207 6878 4.584638 AATAGCAGTTGATGTTGGGGTA 57.415 40.909 0.00 0.00 0.00 3.69
5211 6882 2.749621 GCAGTTGATGTTGGGGTAAGAG 59.250 50.000 0.00 0.00 0.00 2.85
5246 6917 4.452455 CACTCTGACCAAAGCTATTTCGTT 59.548 41.667 0.00 0.00 0.00 3.85
5298 6969 0.107312 CACTGGGAAGCCAGATGAGG 60.107 60.000 0.00 0.00 39.96 3.86
5378 7052 2.470362 CGGGCTGCTGCTGATCAAG 61.470 63.158 15.64 0.00 39.59 3.02
5413 7087 0.240411 GTACGTCACGCTCTTGAGGT 59.760 55.000 0.00 9.28 44.62 3.85
5478 7152 1.148157 CGGACGTGACAGCATGATCC 61.148 60.000 0.00 0.00 39.69 3.36
5531 7205 4.436332 CACTCATCACGGAGATCATTTCA 58.564 43.478 0.00 0.00 38.30 2.69
5532 7206 5.055144 CACTCATCACGGAGATCATTTCAT 58.945 41.667 0.00 0.00 38.30 2.57
5534 7208 6.703165 CACTCATCACGGAGATCATTTCATTA 59.297 38.462 0.00 0.00 38.30 1.90
5541 7215 4.991056 CGGAGATCATTTCATTACGGTGAT 59.009 41.667 0.00 0.00 32.59 3.06
5651 7335 2.009051 CTGGTGCTTTCATACATCGCA 58.991 47.619 0.00 0.00 0.00 5.10
5657 7341 2.009051 CTTTCATACATCGCACAGCCA 58.991 47.619 0.00 0.00 0.00 4.75
5695 7379 4.899239 GCTGTAGCCATCGCCGCT 62.899 66.667 0.00 0.00 40.45 5.52
5870 7554 1.731709 CACAATGGATCTTCGCACGAA 59.268 47.619 5.26 5.26 0.00 3.85
5906 7590 1.086696 CGGATTTGATGGCGTTGAGT 58.913 50.000 0.00 0.00 0.00 3.41
5912 7596 2.360350 ATGGCGTTGAGTGGCAGG 60.360 61.111 0.00 0.00 45.62 4.85
5983 7667 2.970324 GCTGCCGGTGTCGAACAA 60.970 61.111 1.90 0.00 39.00 2.83
6027 7711 4.457496 CAGCTCCACCGCGGATGT 62.457 66.667 35.90 6.51 45.19 3.06
6038 7722 3.190849 CGGATGTGGAGCTGCACG 61.191 66.667 29.82 16.62 0.00 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
92 93 2.264794 GCCTCTCGCGGAAGGAAA 59.735 61.111 25.65 0.00 0.00 3.13
93 94 2.994995 TGCCTCTCGCGGAAGGAA 60.995 61.111 25.65 16.18 42.08 3.36
94 95 3.760035 GTGCCTCTCGCGGAAGGA 61.760 66.667 25.65 11.85 42.08 3.36
96 97 2.507992 CTGTGCCTCTCGCGGAAG 60.508 66.667 6.13 3.71 42.08 3.46
99 100 1.961277 AAAACTGTGCCTCTCGCGG 60.961 57.895 6.13 0.00 42.08 6.46
105 106 1.333619 TCGAAAGCAAAACTGTGCCTC 59.666 47.619 0.00 0.00 46.14 4.70
108 109 3.434637 TCTTTCGAAAGCAAAACTGTGC 58.565 40.909 29.10 0.00 45.28 4.57
110 111 3.489229 GCCTCTTTCGAAAGCAAAACTGT 60.489 43.478 29.10 0.00 35.99 3.55
112 113 2.687935 TGCCTCTTTCGAAAGCAAAACT 59.312 40.909 29.10 0.00 35.99 2.66
118 119 2.982470 CAATTGTGCCTCTTTCGAAAGC 59.018 45.455 29.10 20.48 35.99 3.51
198 199 4.072131 CAACCTCTCTCGGAATGGAAAAA 58.928 43.478 0.00 0.00 0.00 1.94
199 200 3.674997 CAACCTCTCTCGGAATGGAAAA 58.325 45.455 0.00 0.00 0.00 2.29
200 201 2.615493 GCAACCTCTCTCGGAATGGAAA 60.615 50.000 0.00 0.00 0.00 3.13
201 202 1.066143 GCAACCTCTCTCGGAATGGAA 60.066 52.381 0.00 0.00 0.00 3.53
202 203 0.537188 GCAACCTCTCTCGGAATGGA 59.463 55.000 0.00 0.00 0.00 3.41
203 204 0.462759 GGCAACCTCTCTCGGAATGG 60.463 60.000 0.00 0.00 0.00 3.16
204 205 0.539051 AGGCAACCTCTCTCGGAATG 59.461 55.000 0.00 0.00 37.17 2.67
205 206 0.827368 GAGGCAACCTCTCTCGGAAT 59.173 55.000 6.38 0.00 46.41 3.01
206 207 2.277858 GAGGCAACCTCTCTCGGAA 58.722 57.895 6.38 0.00 46.41 4.30
207 208 4.019983 GAGGCAACCTCTCTCGGA 57.980 61.111 6.38 0.00 46.41 4.55
215 216 3.764466 CTCTCGCGGAGGCAACCT 61.764 66.667 6.13 0.00 39.92 3.50
216 217 4.070552 ACTCTCGCGGAGGCAACC 62.071 66.667 22.76 0.00 45.83 3.77
227 228 3.470567 GCACAACGGCGACTCTCG 61.471 66.667 16.62 0.00 43.89 4.04
238 239 1.444119 TTCCAAGAGGCACGCACAAC 61.444 55.000 0.00 0.00 33.74 3.32
239 240 0.749818 TTTCCAAGAGGCACGCACAA 60.750 50.000 0.00 0.00 33.74 3.33
240 241 1.153066 TTTCCAAGAGGCACGCACA 60.153 52.632 0.00 0.00 33.74 4.57
241 242 1.282875 GTTTCCAAGAGGCACGCAC 59.717 57.895 0.00 0.00 33.74 5.34
242 243 2.250939 CGTTTCCAAGAGGCACGCA 61.251 57.895 0.00 0.00 35.45 5.24
243 244 1.503818 TTCGTTTCCAAGAGGCACGC 61.504 55.000 0.00 0.00 39.68 5.34
244 245 0.941542 TTTCGTTTCCAAGAGGCACG 59.058 50.000 0.00 0.00 40.61 5.34
245 246 3.430333 TTTTTCGTTTCCAAGAGGCAC 57.570 42.857 0.00 0.00 33.74 5.01
287 719 1.021390 CCGTGCCTCTTGCGAAAGAT 61.021 55.000 6.23 0.00 45.60 2.40
296 729 2.158726 TGGAAGTAAAACCGTGCCTCTT 60.159 45.455 0.00 0.00 0.00 2.85
311 744 5.431765 CACAACTATGCCTCTTATGGAAGT 58.568 41.667 0.00 0.00 34.03 3.01
585 1061 6.128227 CCAAATCTCGAACCATTTTTACCGTA 60.128 38.462 0.00 0.00 0.00 4.02
671 1151 2.645838 AGCCACTTGTCACAATCTGT 57.354 45.000 0.00 0.00 0.00 3.41
712 1197 0.550914 TCCCACTTTCACAGGTTGCT 59.449 50.000 0.00 0.00 0.00 3.91
721 1206 3.149196 GCAAAGATCACTCCCACTTTCA 58.851 45.455 0.00 0.00 31.52 2.69
778 1265 4.846137 CGGTTGCTATTTATCGCATTAAGC 59.154 41.667 0.00 0.00 35.85 3.09
779 1266 4.846137 GCGGTTGCTATTTATCGCATTAAG 59.154 41.667 0.00 0.00 42.27 1.85
781 1268 3.120820 CGCGGTTGCTATTTATCGCATTA 60.121 43.478 0.00 0.00 42.75 1.90
782 1269 2.349438 CGCGGTTGCTATTTATCGCATT 60.349 45.455 0.00 0.00 42.75 3.56
783 1270 1.194547 CGCGGTTGCTATTTATCGCAT 59.805 47.619 0.00 0.00 42.75 4.73
784 1271 0.579630 CGCGGTTGCTATTTATCGCA 59.420 50.000 0.00 0.00 42.75 5.10
785 1272 0.721483 GCGCGGTTGCTATTTATCGC 60.721 55.000 8.83 0.00 39.65 4.58
789 1276 2.029486 CGTTTAGCGCGGTTGCTATTTA 59.971 45.455 19.09 0.00 46.19 1.40
790 1277 1.201987 CGTTTAGCGCGGTTGCTATTT 60.202 47.619 19.09 0.00 46.19 1.40
792 1279 1.426041 CCGTTTAGCGCGGTTGCTAT 61.426 55.000 19.09 0.00 46.19 2.97
793 1280 2.095847 CCGTTTAGCGCGGTTGCTA 61.096 57.895 19.09 0.51 45.14 3.49
800 1287 0.800683 TGATCAGTCCGTTTAGCGCG 60.801 55.000 0.00 0.00 39.71 6.86
801 1288 0.645868 GTGATCAGTCCGTTTAGCGC 59.354 55.000 0.00 0.00 39.71 5.92
803 1290 2.271800 CCAGTGATCAGTCCGTTTAGC 58.728 52.381 0.00 0.00 0.00 3.09
821 1327 1.622442 AGCCCATTCTAAGCCCCCA 60.622 57.895 0.00 0.00 0.00 4.96
822 1328 1.151679 GAGCCCATTCTAAGCCCCC 59.848 63.158 0.00 0.00 0.00 5.40
894 1403 2.396747 CTTCACACGGGTCGTCGTCA 62.397 60.000 0.00 0.00 41.86 4.35
956 1469 0.032952 TTTTCACGTGACCTCTCCGG 59.967 55.000 19.90 0.00 39.35 5.14
957 1470 1.419374 CTTTTCACGTGACCTCTCCG 58.581 55.000 19.90 0.00 0.00 4.63
958 1471 1.149148 GCTTTTCACGTGACCTCTCC 58.851 55.000 19.90 1.00 0.00 3.71
996 1509 1.572085 CGCTTCCAGTCCAAGCAGTG 61.572 60.000 5.35 0.00 45.66 3.66
1162 1675 0.397957 GAGAGGGGAGAAGGGAGGTC 60.398 65.000 0.00 0.00 0.00 3.85
1170 1683 1.790157 GATAGAGGGGAGAGGGGAGAA 59.210 57.143 0.00 0.00 0.00 2.87
1171 1684 1.462426 GATAGAGGGGAGAGGGGAGA 58.538 60.000 0.00 0.00 0.00 3.71
1240 1753 3.698820 GCCGAACCACTACCCCGT 61.699 66.667 0.00 0.00 0.00 5.28
1279 1792 1.560004 TTCTGCAGCGCGACAGAAAG 61.560 55.000 32.26 13.90 46.89 2.62
1436 1949 6.490381 AGTGAAGGAAAACTGAAAGGATAACC 59.510 38.462 0.00 0.00 39.30 2.85
1437 1950 7.308649 GGAGTGAAGGAAAACTGAAAGGATAAC 60.309 40.741 0.00 0.00 39.30 1.89
1447 1960 0.512952 CGCGGAGTGAAGGAAAACTG 59.487 55.000 0.00 0.00 43.07 3.16
1463 1977 2.801996 TTCGTACAGCCGAACGCG 60.802 61.111 3.53 3.53 41.54 6.01
1601 2115 5.995282 TGAGACACCACACAACCTAATAAAG 59.005 40.000 0.00 0.00 0.00 1.85
1630 2154 1.202806 TCCTGGAGCCACAGAACAAAG 60.203 52.381 6.81 0.00 40.97 2.77
1669 2193 0.723981 GCTCACCATTCTTCAGCGAC 59.276 55.000 0.00 0.00 0.00 5.19
1731 2263 2.065993 AGCACACTACTGCTAACACG 57.934 50.000 0.00 0.00 46.03 4.49
1753 2292 8.093927 TCAAAGAAAGAAAAGGAAAGCAGAAAA 58.906 29.630 0.00 0.00 0.00 2.29
1919 2461 2.175878 AAAGCACTACCAGCAGTCAG 57.824 50.000 0.00 0.00 0.00 3.51
1946 2488 4.525487 ACCGACAAACTAGAGTGATACCAA 59.475 41.667 0.00 0.00 0.00 3.67
1948 2490 4.715527 ACCGACAAACTAGAGTGATACC 57.284 45.455 0.00 0.00 0.00 2.73
1949 2491 6.674694 TCTACCGACAAACTAGAGTGATAC 57.325 41.667 0.00 0.00 0.00 2.24
1950 2492 7.876936 ATTCTACCGACAAACTAGAGTGATA 57.123 36.000 0.00 0.00 0.00 2.15
1952 2494 6.585695 AATTCTACCGACAAACTAGAGTGA 57.414 37.500 0.00 0.00 0.00 3.41
1953 2495 7.043325 GCATAATTCTACCGACAAACTAGAGTG 60.043 40.741 0.00 0.00 0.00 3.51
1954 2496 6.979238 GCATAATTCTACCGACAAACTAGAGT 59.021 38.462 0.00 0.00 0.00 3.24
1955 2497 6.978659 TGCATAATTCTACCGACAAACTAGAG 59.021 38.462 0.00 0.00 0.00 2.43
1956 2498 6.869695 TGCATAATTCTACCGACAAACTAGA 58.130 36.000 0.00 0.00 0.00 2.43
1965 2507 5.065859 CACCACAATTGCATAATTCTACCGA 59.934 40.000 5.05 0.00 34.34 4.69
1967 2509 6.207691 ACACCACAATTGCATAATTCTACC 57.792 37.500 5.05 0.00 34.34 3.18
1997 2539 6.017605 GCCTCTGACATGAACCATATTTACAG 60.018 42.308 0.00 0.00 0.00 2.74
2014 2556 1.483827 TCATGACCATGAGCCTCTGAC 59.516 52.381 8.49 0.00 42.42 3.51
2027 2569 6.924111 ACACAAAATGGAAACTATCATGACC 58.076 36.000 0.00 0.00 0.00 4.02
2058 2600 4.439289 GGCAGAGCACAATTCCTGTAAATC 60.439 45.833 0.00 0.00 36.10 2.17
2083 2628 4.072131 TGACAGCAATAAAGTTCCAGGAC 58.928 43.478 0.00 0.00 0.00 3.85
2148 2697 1.349688 AGAACACCCAGGCATTCGTAA 59.650 47.619 0.00 0.00 0.00 3.18
2151 2700 0.523072 CAAGAACACCCAGGCATTCG 59.477 55.000 0.00 0.00 0.00 3.34
2192 2741 4.454678 TCTGCAAGCATAAACCATCCTAG 58.545 43.478 0.00 0.00 0.00 3.02
2194 2743 3.370840 TCTGCAAGCATAAACCATCCT 57.629 42.857 0.00 0.00 0.00 3.24
2199 2748 4.328169 GCTTTGAATCTGCAAGCATAAACC 59.672 41.667 0.00 0.00 0.00 3.27
2317 2866 5.129368 AGGTGCTAAAATGGTACCATGAT 57.871 39.130 28.00 20.57 40.96 2.45
2318 2867 4.523083 GAGGTGCTAAAATGGTACCATGA 58.477 43.478 28.00 15.00 40.96 3.07
2338 2887 4.019321 TCCTTTTTCCAGTGATAGGTGGAG 60.019 45.833 0.00 0.00 43.80 3.86
2350 2899 3.191371 CACTCCCGATTTCCTTTTTCCAG 59.809 47.826 0.00 0.00 0.00 3.86
2401 2950 5.869350 AGAAATACGTTCTTTGTGCATAGC 58.131 37.500 0.00 0.00 44.64 2.97
2415 2974 8.631480 AGAACATTTAGGGAAAAGAAATACGT 57.369 30.769 0.00 0.00 0.00 3.57
2480 3040 9.498176 ACATAAACTGTCCTTTATTAGTTTCGT 57.502 29.630 0.00 0.00 41.11 3.85
2489 3049 8.918202 TTGAACTCACATAAACTGTCCTTTAT 57.082 30.769 0.00 0.00 35.29 1.40
2514 3074 5.726980 TCAAGGAAATTATGCAGCAGTTT 57.273 34.783 0.00 1.99 0.00 2.66
2519 3079 8.724229 AGAAAATTTTCAAGGAAATTATGCAGC 58.276 29.630 28.00 0.45 38.04 5.25
2614 3175 6.927294 AACAATTATGTGTAGCTTCCTAGC 57.073 37.500 0.00 0.00 43.15 3.42
2615 3176 7.552687 TGGAAACAATTATGTGTAGCTTCCTAG 59.447 37.037 0.00 0.00 40.09 3.02
2616 3177 7.398829 TGGAAACAATTATGTGTAGCTTCCTA 58.601 34.615 0.00 0.00 40.09 2.94
2617 3178 6.245408 TGGAAACAATTATGTGTAGCTTCCT 58.755 36.000 0.00 0.00 40.09 3.36
2618 3179 6.509418 TGGAAACAATTATGTGTAGCTTCC 57.491 37.500 0.00 3.53 39.95 3.46
2699 3260 5.011943 TGAAAATGCAGGCACCTCTAAAATT 59.988 36.000 0.00 0.00 0.00 1.82
2708 3269 0.244721 GGACTGAAAATGCAGGCACC 59.755 55.000 0.00 0.00 45.97 5.01
2712 3273 4.261578 ACAATTGGACTGAAAATGCAGG 57.738 40.909 10.83 0.00 40.20 4.85
2737 3299 7.865706 AATACACAGTTCAGTTTTCTCTTGT 57.134 32.000 0.00 0.00 0.00 3.16
2764 3331 6.178607 ACATATCAGATGCTTCCACACATA 57.821 37.500 0.00 0.00 0.00 2.29
2798 3365 7.230510 TGAATGCACTGTTAGTCCTGTTTAAAT 59.769 33.333 0.00 0.00 0.00 1.40
2850 3417 1.571955 TGCAGGCAGATCTTACCAGA 58.428 50.000 12.96 0.00 0.00 3.86
2885 3452 8.682936 ATTAGAACAGTTGAAATGTCAAGAGT 57.317 30.769 0.00 0.00 44.44 3.24
2906 3479 9.214957 TGGCCGTGTGATAAGAATAATTATTAG 57.785 33.333 10.68 0.00 0.00 1.73
2934 3509 5.108517 GCACCAAACAACAAGATGAAGAAA 58.891 37.500 0.00 0.00 0.00 2.52
2937 3512 4.044336 TGCACCAAACAACAAGATGAAG 57.956 40.909 0.00 0.00 0.00 3.02
2939 3514 3.286353 TCTGCACCAAACAACAAGATGA 58.714 40.909 0.00 0.00 0.00 2.92
2940 3515 3.713858 TCTGCACCAAACAACAAGATG 57.286 42.857 0.00 0.00 0.00 2.90
2941 3516 3.256631 GGATCTGCACCAAACAACAAGAT 59.743 43.478 0.00 0.00 0.00 2.40
3092 3681 5.185056 GGCCAGTTGTTCCAAATAGTAACAT 59.815 40.000 0.00 0.00 33.44 2.71
3119 3708 8.621286 CAATAAAAATACCCTCATAGTGTGGTC 58.379 37.037 0.00 0.00 32.27 4.02
3249 3838 9.066892 ACTAGTGAAACAAGCAATTCAGAAATA 57.933 29.630 0.00 0.00 41.43 1.40
3251 3840 7.333528 ACTAGTGAAACAAGCAATTCAGAAA 57.666 32.000 0.00 0.00 41.43 2.52
3254 3843 7.747799 CACATACTAGTGAAACAAGCAATTCAG 59.252 37.037 5.39 0.00 42.05 3.02
3272 3861 5.950544 ACCAATCTTGTAGGCACATACTA 57.049 39.130 0.00 0.00 33.76 1.82
3273 3862 4.844349 ACCAATCTTGTAGGCACATACT 57.156 40.909 0.00 0.00 33.76 2.12
3274 3863 8.671384 TTATTACCAATCTTGTAGGCACATAC 57.329 34.615 0.00 0.00 33.76 2.39
3291 3880 6.857956 AGCATACGCAAACAATTTATTACCA 58.142 32.000 0.00 0.00 42.27 3.25
3292 3881 7.193595 AGAGCATACGCAAACAATTTATTACC 58.806 34.615 0.00 0.00 42.27 2.85
3322 3911 3.517100 AGAACACTGGCAGTAGATCATGT 59.483 43.478 21.59 9.39 0.00 3.21
3483 4080 9.421806 CTATGAATAGATGAAGACATTGGTCTC 57.578 37.037 0.00 0.00 41.91 3.36
3492 4089 7.039363 AGTGGCTACCTATGAATAGATGAAGAC 60.039 40.741 0.00 0.00 32.05 3.01
3493 4090 7.013220 AGTGGCTACCTATGAATAGATGAAGA 58.987 38.462 0.00 0.00 32.05 2.87
3496 4093 8.753133 CAATAGTGGCTACCTATGAATAGATGA 58.247 37.037 0.00 0.00 32.05 2.92
3497 4094 7.984050 CCAATAGTGGCTACCTATGAATAGATG 59.016 40.741 0.00 0.00 38.35 2.90
3502 4099 6.330250 ACTTCCAATAGTGGCTACCTATGAAT 59.670 38.462 3.77 0.00 45.54 2.57
3513 4110 2.973694 TCCGTACTTCCAATAGTGGC 57.026 50.000 3.77 0.00 45.54 5.01
3525 4122 9.939802 ATGTAATTAAGAAGAAACTTCCGTACT 57.060 29.630 7.72 0.00 0.00 2.73
3549 4146 8.038492 AGAGAAAAGTAGAAAGCTTAGCAATG 57.962 34.615 7.07 0.00 0.00 2.82
3551 4148 6.651225 GGAGAGAAAAGTAGAAAGCTTAGCAA 59.349 38.462 7.07 0.00 0.00 3.91
3644 4256 1.211703 TCACTGCAAGGAGGTGTGAAA 59.788 47.619 0.63 0.00 39.30 2.69
3668 4284 2.930040 AGATCGTAGGCAAAACATGTCG 59.070 45.455 0.00 0.00 39.19 4.35
3683 4299 5.282055 TCTTGGCATATTCAAGAGATCGT 57.718 39.130 11.99 0.00 43.70 3.73
3700 4316 5.757850 AAGTTACTTCAAAGTGCTCTTGG 57.242 39.130 1.02 0.00 40.07 3.61
3711 4327 9.886132 GGATACTTGGAGATAAAGTTACTTCAA 57.114 33.333 0.00 0.00 38.73 2.69
3783 4399 0.872388 GTGCAAACCCCACGAAGTAG 59.128 55.000 0.00 0.00 41.61 2.57
3859 4475 1.745653 GGCCAGAGGATGTTAAACTGC 59.254 52.381 0.00 0.00 0.00 4.40
3862 4478 3.956744 AGAAGGCCAGAGGATGTTAAAC 58.043 45.455 5.01 0.00 0.00 2.01
3863 4479 5.975988 ATAGAAGGCCAGAGGATGTTAAA 57.024 39.130 5.01 0.00 0.00 1.52
3921 4543 7.340487 CCTAGATGACCAGTATATGAGCATACA 59.660 40.741 0.00 0.00 34.42 2.29
3931 4553 5.010708 TCATGCCCTAGATGACCAGTATA 57.989 43.478 0.00 0.00 0.00 1.47
3951 4575 1.490490 CCTACTAGCCCCTGCATTTCA 59.510 52.381 0.00 0.00 41.13 2.69
3963 4587 6.640092 GTGAAATATACGGAACACCTACTAGC 59.360 42.308 0.00 0.00 0.00 3.42
4015 4640 4.530710 ATTGCATTCAGTTGCTGTGAAT 57.469 36.364 0.00 3.72 43.90 2.57
4083 4798 3.069872 TGTGGTCTTGGCGAAGTTTACTA 59.930 43.478 8.41 0.00 0.00 1.82
4102 4817 4.024556 GGCACAGCTATAAGCATACTTGTG 60.025 45.833 11.66 11.66 45.56 3.33
4226 4972 1.045407 TATCGGACACCCACATAGGC 58.955 55.000 0.00 0.00 35.39 3.93
4231 4977 2.569853 ACATCTTTATCGGACACCCACA 59.430 45.455 0.00 0.00 0.00 4.17
4257 5003 7.118971 ACAACAAATGCTTAGAAGTTTTGCAAA 59.881 29.630 8.05 8.05 36.04 3.68
4278 5024 4.347096 CGTTCCCGTGCTACAACA 57.653 55.556 0.00 0.00 0.00 3.33
4380 5126 8.907829 ATATGTACTATCACAGGAATCCTCAT 57.092 34.615 0.00 0.00 0.00 2.90
4382 5128 8.588290 AGATATGTACTATCACAGGAATCCTC 57.412 38.462 0.00 0.00 39.03 3.71
4402 5148 7.854337 AGAATGATGCCCAAACAAAAAGATAT 58.146 30.769 0.00 0.00 0.00 1.63
4428 5174 5.354842 TTCATTTATTTGCATGCCCATCA 57.645 34.783 16.68 0.00 0.00 3.07
4468 5214 3.188159 TGCAACGGGTTATGACCTATC 57.812 47.619 6.62 0.00 45.75 2.08
4512 5284 5.127031 ACAGACCAAACACAAATAAAGCAGT 59.873 36.000 0.00 0.00 0.00 4.40
4514 5286 5.590530 ACAGACCAAACACAAATAAAGCA 57.409 34.783 0.00 0.00 0.00 3.91
4515 5287 7.865385 TGATAACAGACCAAACACAAATAAAGC 59.135 33.333 0.00 0.00 0.00 3.51
4544 5318 3.665323 GCACAACGCATCTGAACAAGTAG 60.665 47.826 0.00 0.00 41.79 2.57
4560 5334 7.699391 TGTATTAGTACTGTATTCTCGCACAAC 59.301 37.037 5.39 0.00 0.00 3.32
4563 5337 8.798748 ATTGTATTAGTACTGTATTCTCGCAC 57.201 34.615 5.39 0.00 0.00 5.34
4586 5466 8.156820 CCACCAAGGAATAAAGAAAGGAAAATT 58.843 33.333 0.00 0.00 41.22 1.82
4593 5473 5.534654 TGTGACCACCAAGGAATAAAGAAAG 59.465 40.000 0.00 0.00 41.22 2.62
4594 5474 5.450453 TGTGACCACCAAGGAATAAAGAAA 58.550 37.500 0.00 0.00 41.22 2.52
4670 5550 4.630069 TGCTGCTTATAGACTTCGGAAAAC 59.370 41.667 0.00 0.00 0.00 2.43
4685 5565 2.224499 TGGACACAATCACTGCTGCTTA 60.224 45.455 0.00 0.00 0.00 3.09
4846 5734 5.652891 AGATCTACCAGATAACACACGAAGT 59.347 40.000 0.00 0.00 36.46 3.01
4867 5755 1.822990 CATGCCAAACTTGCAGGAGAT 59.177 47.619 1.40 0.00 42.76 2.75
4870 5758 0.961019 GACATGCCAAACTTGCAGGA 59.039 50.000 1.40 0.00 42.76 3.86
4871 5759 0.387622 CGACATGCCAAACTTGCAGG 60.388 55.000 0.00 0.00 45.38 4.85
4872 5760 0.387622 CCGACATGCCAAACTTGCAG 60.388 55.000 0.00 0.00 42.92 4.41
4875 5763 0.950836 TCACCGACATGCCAAACTTG 59.049 50.000 0.00 0.00 0.00 3.16
4876 5764 1.336755 GTTCACCGACATGCCAAACTT 59.663 47.619 0.00 0.00 0.00 2.66
4914 5802 9.968743 CCTAGTTGTTCATATTCTTCGTTTAAC 57.031 33.333 0.00 0.00 0.00 2.01
4925 5818 6.662755 TGATTCCTGCCTAGTTGTTCATATT 58.337 36.000 0.00 0.00 0.00 1.28
4926 5819 6.252599 TGATTCCTGCCTAGTTGTTCATAT 57.747 37.500 0.00 0.00 0.00 1.78
4927 5820 5.692115 TGATTCCTGCCTAGTTGTTCATA 57.308 39.130 0.00 0.00 0.00 2.15
4995 5889 6.491745 TGGGCAATTTAACAAACATCTAGTCA 59.508 34.615 0.00 0.00 0.00 3.41
5006 5900 6.842437 TGCTATAACTGGGCAATTTAACAA 57.158 33.333 0.00 0.00 32.79 2.83
5007 5901 6.842437 TTGCTATAACTGGGCAATTTAACA 57.158 33.333 0.00 0.00 40.38 2.41
5009 5903 7.704472 CGAATTTGCTATAACTGGGCAATTTAA 59.296 33.333 0.00 0.00 43.86 1.52
5011 5905 6.042143 CGAATTTGCTATAACTGGGCAATTT 58.958 36.000 0.00 0.00 43.86 1.82
5017 5911 3.247648 CGGACGAATTTGCTATAACTGGG 59.752 47.826 0.00 0.00 0.00 4.45
5053 5947 8.539770 ACAGGAAATATTCAGTAATAGCATCG 57.460 34.615 0.00 0.00 31.18 3.84
5064 5958 5.354234 ACGGCTGTTAACAGGAAATATTCAG 59.646 40.000 31.42 17.29 43.94 3.02
5072 5988 0.948678 GCAACGGCTGTTAACAGGAA 59.051 50.000 31.42 0.47 43.94 3.36
5090 6006 0.796927 GAGACCAACGCACCTAAAGC 59.203 55.000 0.00 0.00 0.00 3.51
5091 6007 1.068474 CGAGACCAACGCACCTAAAG 58.932 55.000 0.00 0.00 0.00 1.85
5100 6016 0.318699 TCTCACAAGCGAGACCAACG 60.319 55.000 0.00 0.00 37.12 4.10
5110 6221 0.657840 AGCAAACACGTCTCACAAGC 59.342 50.000 0.00 0.00 0.00 4.01
5121 6232 4.672801 GCAGCTCCAACTATAAGCAAACAC 60.673 45.833 0.00 0.00 38.51 3.32
5131 6242 0.108138 GACACCGCAGCTCCAACTAT 60.108 55.000 0.00 0.00 0.00 2.12
5150 6261 2.602257 TATCAAGGCGGTGTCTCATG 57.398 50.000 0.00 0.00 0.00 3.07
5151 6262 2.037772 GGATATCAAGGCGGTGTCTCAT 59.962 50.000 4.83 0.00 0.00 2.90
5152 6263 1.412710 GGATATCAAGGCGGTGTCTCA 59.587 52.381 4.83 0.00 0.00 3.27
5153 6264 1.603172 CGGATATCAAGGCGGTGTCTC 60.603 57.143 4.83 0.00 0.00 3.36
5155 6266 0.387929 TCGGATATCAAGGCGGTGTC 59.612 55.000 4.83 0.00 0.00 3.67
5156 6267 0.104304 GTCGGATATCAAGGCGGTGT 59.896 55.000 4.83 0.00 0.00 4.16
5157 6268 0.104120 TGTCGGATATCAAGGCGGTG 59.896 55.000 4.83 0.00 0.00 4.94
5158 6269 1.048601 ATGTCGGATATCAAGGCGGT 58.951 50.000 4.83 0.00 0.00 5.68
5159 6270 3.448686 GATATGTCGGATATCAAGGCGG 58.551 50.000 4.83 0.00 32.68 6.13
5160 6271 3.448686 GGATATGTCGGATATCAAGGCG 58.551 50.000 4.83 0.00 33.76 5.52
5161 6272 3.432326 GGGGATATGTCGGATATCAAGGC 60.432 52.174 4.83 0.00 33.76 4.35
5162 6273 3.774766 TGGGGATATGTCGGATATCAAGG 59.225 47.826 4.83 0.00 33.76 3.61
5164 6275 5.834281 TTTGGGGATATGTCGGATATCAA 57.166 39.130 4.83 0.00 33.76 2.57
5165 6276 5.834281 TTTTGGGGATATGTCGGATATCA 57.166 39.130 4.83 0.00 33.76 2.15
5166 6277 6.483640 GCTATTTTGGGGATATGTCGGATATC 59.516 42.308 0.00 0.00 0.00 1.63
5167 6278 6.069673 TGCTATTTTGGGGATATGTCGGATAT 60.070 38.462 0.00 0.00 0.00 1.63
5168 6279 5.249622 TGCTATTTTGGGGATATGTCGGATA 59.750 40.000 0.00 0.00 0.00 2.59
5172 6843 4.389374 ACTGCTATTTTGGGGATATGTCG 58.611 43.478 0.00 0.00 0.00 4.35
5207 6878 0.252284 AGTGTCCGATCCCACCTCTT 60.252 55.000 2.22 0.00 31.88 2.85
5211 6882 0.970937 TCAGAGTGTCCGATCCCACC 60.971 60.000 2.22 0.00 31.88 4.61
5246 6917 1.839424 TCTGCTCAAGAGGATCGACA 58.161 50.000 0.00 0.00 42.67 4.35
5298 6969 2.359230 GTGCACTCCAGGTCAGCC 60.359 66.667 10.32 0.00 0.00 4.85
5384 7058 2.672651 TGACGTACCGGCGAGGAA 60.673 61.111 9.30 0.00 45.00 3.36
5413 7087 0.319555 GGCTATCGCTACGCCATCAA 60.320 55.000 0.00 0.00 43.25 2.57
5478 7152 1.134788 ACAAGCTATCTTCGGTTCGGG 60.135 52.381 0.00 0.00 0.00 5.14
5514 7188 4.991056 CCGTAATGAAATGATCTCCGTGAT 59.009 41.667 0.00 0.00 38.27 3.06
5531 7205 1.681793 ACTGCGCTCTATCACCGTAAT 59.318 47.619 9.73 0.00 0.00 1.89
5532 7206 1.100510 ACTGCGCTCTATCACCGTAA 58.899 50.000 9.73 0.00 0.00 3.18
5534 7208 0.663688 CTACTGCGCTCTATCACCGT 59.336 55.000 9.73 0.00 0.00 4.83
5541 7215 6.040504 TGAATAAATTCTCCTACTGCGCTCTA 59.959 38.462 9.73 0.00 37.67 2.43
5657 7341 1.898574 CGAGCAACCTGTGGCCTTT 60.899 57.895 3.32 0.00 0.00 3.11
5695 7379 2.817834 GTAACAGCATCGCGGGCA 60.818 61.111 22.18 0.00 0.00 5.36
5870 7554 3.007323 GGGACCTACCGGCACCTT 61.007 66.667 0.00 0.00 40.11 3.50
5912 7596 1.444917 GCTGCAACCGGGGCTATTAC 61.445 60.000 19.32 3.29 0.00 1.89
5983 7667 2.099263 CGAGTCCCGTCAAGATATGTGT 59.901 50.000 0.00 0.00 0.00 3.72
5987 7671 0.674534 GCCGAGTCCCGTCAAGATAT 59.325 55.000 0.00 0.00 36.31 1.63
6017 7701 4.457496 CAGCTCCACATCCGCGGT 62.457 66.667 27.15 10.00 0.00 5.68
6022 7706 1.812922 CTCGTGCAGCTCCACATCC 60.813 63.158 8.83 0.00 35.47 3.51
6027 7711 2.970639 GTACCTCGTGCAGCTCCA 59.029 61.111 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.