Multiple sequence alignment - TraesCS2B01G464900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G464900 chr2B 100.000 4417 0 0 1 4417 659086942 659082526 0.000000e+00 8157
1 TraesCS2B01G464900 chr2B 85.714 161 17 4 572 727 218624256 218624415 9.830000e-37 165
2 TraesCS2B01G464900 chr2D 94.739 2718 116 10 836 3546 553388574 553385877 0.000000e+00 4202
3 TraesCS2B01G464900 chr2D 97.222 864 20 4 3557 4417 553385783 553384921 0.000000e+00 1459
4 TraesCS2B01G464900 chr2D 90.987 233 20 1 222 454 553389264 553389033 3.320000e-81 313
5 TraesCS2B01G464900 chr2D 84.211 152 19 3 568 714 395559764 395559613 4.610000e-30 143
6 TraesCS2B01G464900 chr2A 93.736 2267 113 13 1181 3426 693445710 693443452 0.000000e+00 3373
7 TraesCS2B01G464900 chr2A 90.085 353 21 9 836 1182 693446139 693445795 3.130000e-121 446
8 TraesCS2B01G464900 chr2A 84.211 152 18 4 568 714 523879435 523879585 4.610000e-30 143
9 TraesCS2B01G464900 chr3A 83.882 912 135 12 3504 4411 741667345 741668248 0.000000e+00 859
10 TraesCS2B01G464900 chr3A 83.784 148 18 4 572 714 1888904 1889050 7.710000e-28 135
11 TraesCS2B01G464900 chr3D 86.235 494 58 5 2627 3120 515812114 515811631 1.090000e-145 527
12 TraesCS2B01G464900 chr5B 80.682 528 67 16 2621 3124 455883114 455883630 1.160000e-100 377
13 TraesCS2B01G464900 chr7B 87.121 132 17 0 596 727 600024054 600023923 2.750000e-32 150
14 TraesCS2B01G464900 chr7B 81.818 165 25 3 568 727 553111482 553111318 2.770000e-27 134
15 TraesCS2B01G464900 chr7D 83.851 161 20 3 572 727 388040793 388040952 9.900000e-32 148
16 TraesCS2B01G464900 chr1A 86.364 132 18 0 596 727 275774493 275774362 1.280000e-30 145
17 TraesCS2B01G464900 chr1A 83.553 152 19 3 568 714 311034998 311035148 2.140000e-28 137
18 TraesCS2B01G464900 chr1A 89.888 89 9 0 369 457 492628084 492628172 1.000000e-21 115
19 TraesCS2B01G464900 chr1B 92.135 89 7 0 369 457 529950494 529950582 4.640000e-25 126


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G464900 chr2B 659082526 659086942 4416 True 8157.000000 8157 100.0000 1 4417 1 chr2B.!!$R1 4416
1 TraesCS2B01G464900 chr2D 553384921 553389264 4343 True 1991.333333 4202 94.3160 222 4417 3 chr2D.!!$R2 4195
2 TraesCS2B01G464900 chr2A 693443452 693446139 2687 True 1909.500000 3373 91.9105 836 3426 2 chr2A.!!$R1 2590
3 TraesCS2B01G464900 chr3A 741667345 741668248 903 False 859.000000 859 83.8820 3504 4411 1 chr3A.!!$F2 907
4 TraesCS2B01G464900 chr5B 455883114 455883630 516 False 377.000000 377 80.6820 2621 3124 1 chr5B.!!$F1 503

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
486 487 0.032815 GGAATCTCCGTAGCCTGCTC 59.967 60.0 0.0 0.0 0.00 4.26 F
569 622 0.106918 AACACCCCTGCTTCGAACAA 60.107 50.0 0.0 0.0 0.00 2.83 F
570 623 0.110486 ACACCCCTGCTTCGAACAAT 59.890 50.0 0.0 0.0 0.00 2.71 F
2193 2392 0.031585 TGACAAGAACACGTCGGGAG 59.968 55.0 0.0 0.0 34.78 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1872 2063 1.298157 TGCAGAGGCCGATCAAAACG 61.298 55.000 0.00 0.0 40.13 3.60 R
1897 2088 2.539953 GCAGAGGATCACTTACGACGAG 60.540 54.545 0.00 0.0 37.82 4.18 R
2586 2785 4.645535 AGCATTTAGTCTGCAACTCTGAA 58.354 39.130 5.04 0.0 42.15 3.02 R
4079 4387 1.158007 ACCCCCTCACATTCCAAACT 58.842 50.000 0.00 0.0 0.00 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.122783 TGGGCGGATTAAGTTTGAGG 57.877 50.000 0.00 0.00 0.00 3.86
20 21 1.631388 TGGGCGGATTAAGTTTGAGGA 59.369 47.619 0.00 0.00 0.00 3.71
21 22 2.040545 TGGGCGGATTAAGTTTGAGGAA 59.959 45.455 0.00 0.00 0.00 3.36
22 23 2.683362 GGGCGGATTAAGTTTGAGGAAG 59.317 50.000 0.00 0.00 0.00 3.46
23 24 3.606687 GGCGGATTAAGTTTGAGGAAGA 58.393 45.455 0.00 0.00 0.00 2.87
24 25 3.623510 GGCGGATTAAGTTTGAGGAAGAG 59.376 47.826 0.00 0.00 0.00 2.85
25 26 4.254492 GCGGATTAAGTTTGAGGAAGAGT 58.746 43.478 0.00 0.00 0.00 3.24
26 27 4.330347 GCGGATTAAGTTTGAGGAAGAGTC 59.670 45.833 0.00 0.00 0.00 3.36
27 28 5.479306 CGGATTAAGTTTGAGGAAGAGTCA 58.521 41.667 0.00 0.00 0.00 3.41
28 29 6.109359 CGGATTAAGTTTGAGGAAGAGTCAT 58.891 40.000 0.00 0.00 0.00 3.06
29 30 6.595716 CGGATTAAGTTTGAGGAAGAGTCATT 59.404 38.462 0.00 0.00 0.00 2.57
30 31 7.119846 CGGATTAAGTTTGAGGAAGAGTCATTT 59.880 37.037 0.00 0.00 0.00 2.32
31 32 8.797438 GGATTAAGTTTGAGGAAGAGTCATTTT 58.203 33.333 0.00 0.00 0.00 1.82
54 55 8.467402 TTTTTGCAAATAATACCCGTAATGTG 57.533 30.769 13.65 0.00 0.00 3.21
55 56 5.176407 TGCAAATAATACCCGTAATGTGC 57.824 39.130 0.00 0.00 0.00 4.57
56 57 4.215965 GCAAATAATACCCGTAATGTGCG 58.784 43.478 0.00 0.00 0.00 5.34
57 58 4.260866 GCAAATAATACCCGTAATGTGCGT 60.261 41.667 0.00 0.00 0.00 5.24
58 59 5.437263 CAAATAATACCCGTAATGTGCGTC 58.563 41.667 0.00 0.00 0.00 5.19
59 60 1.563111 AATACCCGTAATGTGCGTCG 58.437 50.000 0.00 0.00 0.00 5.12
60 61 0.740149 ATACCCGTAATGTGCGTCGA 59.260 50.000 0.00 0.00 0.00 4.20
61 62 0.179166 TACCCGTAATGTGCGTCGAC 60.179 55.000 5.18 5.18 0.00 4.20
62 63 2.162754 CCCGTAATGTGCGTCGACC 61.163 63.158 10.58 3.43 0.00 4.79
63 64 1.153901 CCGTAATGTGCGTCGACCT 60.154 57.895 10.58 0.00 0.00 3.85
64 65 1.410737 CCGTAATGTGCGTCGACCTG 61.411 60.000 10.58 0.00 0.00 4.00
65 66 1.410737 CGTAATGTGCGTCGACCTGG 61.411 60.000 10.58 0.00 0.00 4.45
66 67 1.082117 GTAATGTGCGTCGACCTGGG 61.082 60.000 10.58 0.00 0.00 4.45
67 68 2.845752 TAATGTGCGTCGACCTGGGC 62.846 60.000 10.58 8.13 0.00 5.36
69 70 4.681978 GTGCGTCGACCTGGGCTT 62.682 66.667 10.58 0.00 0.00 4.35
70 71 3.936203 TGCGTCGACCTGGGCTTT 61.936 61.111 10.58 0.00 0.00 3.51
71 72 3.423154 GCGTCGACCTGGGCTTTG 61.423 66.667 10.58 0.00 0.00 2.77
72 73 2.342279 CGTCGACCTGGGCTTTGA 59.658 61.111 10.58 0.00 0.00 2.69
73 74 1.301401 CGTCGACCTGGGCTTTGAA 60.301 57.895 10.58 0.00 0.00 2.69
74 75 0.673644 CGTCGACCTGGGCTTTGAAT 60.674 55.000 10.58 0.00 0.00 2.57
75 76 1.534729 GTCGACCTGGGCTTTGAATT 58.465 50.000 3.51 0.00 0.00 2.17
76 77 1.886542 GTCGACCTGGGCTTTGAATTT 59.113 47.619 3.51 0.00 0.00 1.82
77 78 2.296190 GTCGACCTGGGCTTTGAATTTT 59.704 45.455 3.51 0.00 0.00 1.82
78 79 2.556622 TCGACCTGGGCTTTGAATTTTC 59.443 45.455 0.00 0.00 0.00 2.29
79 80 2.352715 CGACCTGGGCTTTGAATTTTCC 60.353 50.000 0.00 0.00 0.00 3.13
80 81 2.899900 GACCTGGGCTTTGAATTTTCCT 59.100 45.455 0.00 0.00 0.00 3.36
81 82 2.634453 ACCTGGGCTTTGAATTTTCCTG 59.366 45.455 0.00 0.00 0.00 3.86
82 83 2.613725 CCTGGGCTTTGAATTTTCCTGC 60.614 50.000 0.00 0.00 0.00 4.85
83 84 1.347378 TGGGCTTTGAATTTTCCTGCC 59.653 47.619 0.00 0.00 36.08 4.85
84 85 1.625315 GGGCTTTGAATTTTCCTGCCT 59.375 47.619 13.84 0.00 36.63 4.75
85 86 2.613725 GGGCTTTGAATTTTCCTGCCTG 60.614 50.000 13.84 0.00 36.63 4.85
86 87 2.071540 GCTTTGAATTTTCCTGCCTGC 58.928 47.619 0.00 0.00 0.00 4.85
87 88 2.548493 GCTTTGAATTTTCCTGCCTGCA 60.548 45.455 0.00 0.00 0.00 4.41
88 89 3.867216 GCTTTGAATTTTCCTGCCTGCAT 60.867 43.478 0.00 0.00 0.00 3.96
89 90 3.322211 TTGAATTTTCCTGCCTGCATG 57.678 42.857 0.00 0.00 0.00 4.06
90 91 1.066716 TGAATTTTCCTGCCTGCATGC 60.067 47.619 11.82 11.82 0.00 4.06
91 92 0.108520 AATTTTCCTGCCTGCATGCG 60.109 50.000 14.09 7.87 0.00 4.73
92 93 1.252904 ATTTTCCTGCCTGCATGCGT 61.253 50.000 14.09 0.00 0.00 5.24
93 94 1.865788 TTTTCCTGCCTGCATGCGTC 61.866 55.000 14.09 4.94 0.00 5.19
94 95 2.753009 TTTCCTGCCTGCATGCGTCT 62.753 55.000 14.09 0.00 0.00 4.18
95 96 3.200593 CCTGCCTGCATGCGTCTC 61.201 66.667 14.09 2.66 0.00 3.36
96 97 2.435410 CTGCCTGCATGCGTCTCA 60.435 61.111 14.09 7.34 0.00 3.27
97 98 2.435410 TGCCTGCATGCGTCTCAG 60.435 61.111 14.09 3.95 0.00 3.35
98 99 2.125391 GCCTGCATGCGTCTCAGA 60.125 61.111 14.09 0.00 0.00 3.27
99 100 1.523258 GCCTGCATGCGTCTCAGAT 60.523 57.895 14.09 0.00 0.00 2.90
100 101 0.249615 GCCTGCATGCGTCTCAGATA 60.250 55.000 14.09 0.00 0.00 1.98
101 102 1.495878 CCTGCATGCGTCTCAGATAC 58.504 55.000 14.09 0.00 0.00 2.24
102 103 1.068281 CCTGCATGCGTCTCAGATACT 59.932 52.381 14.09 0.00 0.00 2.12
103 104 2.125685 CTGCATGCGTCTCAGATACTG 58.874 52.381 14.09 0.00 0.00 2.74
104 105 0.857935 GCATGCGTCTCAGATACTGC 59.142 55.000 0.00 0.00 0.00 4.40
105 106 1.537776 GCATGCGTCTCAGATACTGCT 60.538 52.381 0.00 0.00 0.00 4.24
106 107 2.287849 GCATGCGTCTCAGATACTGCTA 60.288 50.000 0.00 0.00 0.00 3.49
107 108 3.563508 CATGCGTCTCAGATACTGCTAG 58.436 50.000 0.00 0.00 0.00 3.42
108 109 1.335182 TGCGTCTCAGATACTGCTAGC 59.665 52.381 8.10 8.10 0.00 3.42
109 110 1.661743 GCGTCTCAGATACTGCTAGCG 60.662 57.143 10.77 7.61 0.00 4.26
110 111 1.069568 CGTCTCAGATACTGCTAGCGG 60.070 57.143 22.26 22.26 0.00 5.52
111 112 1.268352 GTCTCAGATACTGCTAGCGGG 59.732 57.143 26.90 16.15 0.00 6.13
112 113 0.600557 CTCAGATACTGCTAGCGGGG 59.399 60.000 26.90 13.69 0.00 5.73
113 114 1.005630 CAGATACTGCTAGCGGGGC 60.006 63.158 26.90 15.13 0.00 5.80
114 115 2.049063 GATACTGCTAGCGGGGCG 60.049 66.667 26.90 7.29 0.00 6.13
115 116 2.520982 ATACTGCTAGCGGGGCGA 60.521 61.111 26.90 10.00 0.00 5.54
116 117 2.479412 GATACTGCTAGCGGGGCGAG 62.479 65.000 26.90 11.92 34.50 5.03
118 119 4.577246 CTGCTAGCGGGGCGAGTC 62.577 72.222 16.30 0.00 33.92 3.36
120 121 4.577246 GCTAGCGGGGCGAGTCAG 62.577 72.222 0.00 0.00 33.92 3.51
121 122 3.141488 CTAGCGGGGCGAGTCAGT 61.141 66.667 0.00 0.00 0.00 3.41
122 123 3.127352 CTAGCGGGGCGAGTCAGTC 62.127 68.421 0.00 0.00 0.00 3.51
131 132 4.057428 GAGTCAGTCCGGCGCTGT 62.057 66.667 16.49 7.08 35.60 4.40
132 133 3.575351 GAGTCAGTCCGGCGCTGTT 62.575 63.158 16.49 12.73 35.60 3.16
133 134 2.665185 GTCAGTCCGGCGCTGTTT 60.665 61.111 16.49 0.00 35.60 2.83
134 135 2.110213 TCAGTCCGGCGCTGTTTT 59.890 55.556 16.49 0.00 35.60 2.43
135 136 0.947180 GTCAGTCCGGCGCTGTTTTA 60.947 55.000 16.49 0.00 35.60 1.52
136 137 0.669318 TCAGTCCGGCGCTGTTTTAG 60.669 55.000 16.49 0.00 35.60 1.85
147 148 1.909700 CTGTTTTAGCCCTTCCTGCA 58.090 50.000 0.00 0.00 0.00 4.41
148 149 2.238521 CTGTTTTAGCCCTTCCTGCAA 58.761 47.619 0.00 0.00 0.00 4.08
149 150 2.827921 CTGTTTTAGCCCTTCCTGCAAT 59.172 45.455 0.00 0.00 0.00 3.56
150 151 2.825532 TGTTTTAGCCCTTCCTGCAATC 59.174 45.455 0.00 0.00 0.00 2.67
151 152 2.143876 TTTAGCCCTTCCTGCAATCC 57.856 50.000 0.00 0.00 0.00 3.01
152 153 0.107214 TTAGCCCTTCCTGCAATCCG 60.107 55.000 0.00 0.00 0.00 4.18
153 154 0.980754 TAGCCCTTCCTGCAATCCGA 60.981 55.000 0.00 0.00 0.00 4.55
154 155 2.115291 GCCCTTCCTGCAATCCGAC 61.115 63.158 0.00 0.00 0.00 4.79
155 156 1.299648 CCCTTCCTGCAATCCGACA 59.700 57.895 0.00 0.00 0.00 4.35
156 157 0.107017 CCCTTCCTGCAATCCGACAT 60.107 55.000 0.00 0.00 0.00 3.06
157 158 1.019673 CCTTCCTGCAATCCGACATG 58.980 55.000 0.00 0.00 0.00 3.21
158 159 1.019673 CTTCCTGCAATCCGACATGG 58.980 55.000 0.00 0.00 40.09 3.66
159 160 1.031571 TTCCTGCAATCCGACATGGC 61.032 55.000 0.00 0.00 37.80 4.40
160 161 2.484062 CCTGCAATCCGACATGGCC 61.484 63.158 0.00 0.00 37.80 5.36
161 162 2.823593 TGCAATCCGACATGGCCG 60.824 61.111 0.00 0.00 37.80 6.13
163 164 3.585990 CAATCCGACATGGCCGGC 61.586 66.667 21.18 21.18 46.10 6.13
167 168 4.823419 CCGACATGGCCGGCGTAA 62.823 66.667 22.54 9.22 40.54 3.18
168 169 2.587753 CGACATGGCCGGCGTAAT 60.588 61.111 22.54 11.42 0.00 1.89
169 170 1.300311 CGACATGGCCGGCGTAATA 60.300 57.895 22.54 4.25 0.00 0.98
170 171 1.282248 CGACATGGCCGGCGTAATAG 61.282 60.000 22.54 9.34 0.00 1.73
171 172 0.249741 GACATGGCCGGCGTAATAGT 60.250 55.000 22.54 12.73 0.00 2.12
172 173 0.531974 ACATGGCCGGCGTAATAGTG 60.532 55.000 22.54 12.84 0.00 2.74
173 174 1.070786 ATGGCCGGCGTAATAGTGG 59.929 57.895 22.54 0.00 0.00 4.00
174 175 2.280592 GGCCGGCGTAATAGTGGG 60.281 66.667 22.54 0.00 0.00 4.61
175 176 2.799452 GGCCGGCGTAATAGTGGGA 61.799 63.158 22.54 0.00 0.00 4.37
176 177 1.370064 GCCGGCGTAATAGTGGGAT 59.630 57.895 12.58 0.00 0.00 3.85
177 178 0.250166 GCCGGCGTAATAGTGGGATT 60.250 55.000 12.58 0.00 0.00 3.01
178 179 1.001181 GCCGGCGTAATAGTGGGATTA 59.999 52.381 12.58 0.00 0.00 1.75
179 180 2.929592 GCCGGCGTAATAGTGGGATTAG 60.930 54.545 12.58 0.00 0.00 1.73
180 181 2.334838 CGGCGTAATAGTGGGATTAGC 58.665 52.381 0.00 0.00 0.00 3.09
181 182 2.696506 GGCGTAATAGTGGGATTAGCC 58.303 52.381 0.00 0.00 32.97 3.93
182 183 2.302157 GGCGTAATAGTGGGATTAGCCT 59.698 50.000 0.00 0.00 35.23 4.58
183 184 3.586892 GCGTAATAGTGGGATTAGCCTC 58.413 50.000 0.00 0.00 36.66 4.70
184 185 3.258622 GCGTAATAGTGGGATTAGCCTCT 59.741 47.826 0.00 0.00 36.66 3.69
185 186 4.618693 GCGTAATAGTGGGATTAGCCTCTC 60.619 50.000 0.00 0.00 36.66 3.20
186 187 4.767928 CGTAATAGTGGGATTAGCCTCTCT 59.232 45.833 0.00 0.00 36.66 3.10
187 188 5.106078 CGTAATAGTGGGATTAGCCTCTCTC 60.106 48.000 0.00 0.00 36.66 3.20
188 189 2.095604 AGTGGGATTAGCCTCTCTCC 57.904 55.000 0.00 0.00 36.66 3.71
189 190 1.578215 AGTGGGATTAGCCTCTCTCCT 59.422 52.381 0.00 0.00 36.66 3.69
190 191 2.022527 AGTGGGATTAGCCTCTCTCCTT 60.023 50.000 0.00 0.00 36.66 3.36
191 192 2.774809 GTGGGATTAGCCTCTCTCCTTT 59.225 50.000 0.00 0.00 36.66 3.11
192 193 2.774234 TGGGATTAGCCTCTCTCCTTTG 59.226 50.000 0.00 0.00 36.66 2.77
193 194 2.486370 GGGATTAGCCTCTCTCCTTTGC 60.486 54.545 0.00 0.00 36.66 3.68
194 195 2.171448 GGATTAGCCTCTCTCCTTTGCA 59.829 50.000 0.00 0.00 0.00 4.08
195 196 3.465871 GATTAGCCTCTCTCCTTTGCAG 58.534 50.000 0.00 0.00 0.00 4.41
196 197 0.539051 TAGCCTCTCTCCTTTGCAGC 59.461 55.000 0.00 0.00 0.00 5.25
197 198 1.200092 AGCCTCTCTCCTTTGCAGCT 61.200 55.000 0.00 0.00 0.00 4.24
198 199 0.322366 GCCTCTCTCCTTTGCAGCTT 60.322 55.000 0.00 0.00 0.00 3.74
199 200 1.885790 GCCTCTCTCCTTTGCAGCTTT 60.886 52.381 0.00 0.00 0.00 3.51
200 201 1.811359 CCTCTCTCCTTTGCAGCTTTG 59.189 52.381 0.00 0.00 0.00 2.77
201 202 1.199558 CTCTCTCCTTTGCAGCTTTGC 59.800 52.381 0.00 0.00 0.00 3.68
202 203 1.202855 TCTCTCCTTTGCAGCTTTGCT 60.203 47.619 0.00 0.00 40.77 3.91
203 204 2.038952 TCTCTCCTTTGCAGCTTTGCTA 59.961 45.455 0.00 0.00 36.40 3.49
204 205 2.154462 TCTCCTTTGCAGCTTTGCTAC 58.846 47.619 0.00 0.00 36.40 3.58
205 206 2.157738 CTCCTTTGCAGCTTTGCTACT 58.842 47.619 0.00 0.00 36.40 2.57
206 207 3.007940 TCTCCTTTGCAGCTTTGCTACTA 59.992 43.478 0.00 0.00 36.40 1.82
207 208 3.338249 TCCTTTGCAGCTTTGCTACTAG 58.662 45.455 0.00 0.00 36.40 2.57
208 209 3.077359 CCTTTGCAGCTTTGCTACTAGT 58.923 45.455 0.00 0.00 36.40 2.57
209 210 4.020573 TCCTTTGCAGCTTTGCTACTAGTA 60.021 41.667 1.89 1.89 36.40 1.82
210 211 4.695455 CCTTTGCAGCTTTGCTACTAGTAA 59.305 41.667 3.76 0.00 36.40 2.24
211 212 5.390991 CCTTTGCAGCTTTGCTACTAGTAAC 60.391 44.000 3.76 0.00 36.40 2.50
212 213 4.537135 TGCAGCTTTGCTACTAGTAACT 57.463 40.909 3.76 0.00 36.40 2.24
213 214 4.245660 TGCAGCTTTGCTACTAGTAACTG 58.754 43.478 3.76 6.28 36.40 3.16
214 215 4.246458 GCAGCTTTGCTACTAGTAACTGT 58.754 43.478 3.76 0.00 36.40 3.55
215 216 4.327627 GCAGCTTTGCTACTAGTAACTGTC 59.672 45.833 3.76 0.00 36.40 3.51
216 217 5.470368 CAGCTTTGCTACTAGTAACTGTCA 58.530 41.667 3.76 0.00 36.40 3.58
217 218 5.574830 CAGCTTTGCTACTAGTAACTGTCAG 59.425 44.000 3.76 0.00 36.40 3.51
218 219 4.327627 GCTTTGCTACTAGTAACTGTCAGC 59.672 45.833 3.76 4.38 0.00 4.26
219 220 3.759527 TGCTACTAGTAACTGTCAGCG 57.240 47.619 3.76 0.00 0.00 5.18
220 221 3.079578 TGCTACTAGTAACTGTCAGCGT 58.920 45.455 3.76 0.00 0.00 5.07
247 248 5.071788 TCATGTCTCCATTCACCTATAACCC 59.928 44.000 0.00 0.00 0.00 4.11
255 256 0.106149 CACCTATAACCCTGCGTCCC 59.894 60.000 0.00 0.00 0.00 4.46
272 273 4.732784 CGTCCCATTTACCAATTTGACTG 58.267 43.478 0.00 0.00 0.00 3.51
276 277 4.457603 CCCATTTACCAATTTGACTGTCGA 59.542 41.667 2.98 0.00 0.00 4.20
282 283 4.699637 ACCAATTTGACTGTCGAACTGTA 58.300 39.130 15.70 0.00 30.17 2.74
304 305 3.389983 AGTTGCTGTACTCCCAAACAGTA 59.610 43.478 4.57 0.00 44.03 2.74
306 307 4.425180 TGCTGTACTCCCAAACAGTAAA 57.575 40.909 4.57 0.00 44.03 2.01
330 331 1.841302 TTCTCGCTGGATGTTGCCCT 61.841 55.000 0.00 0.00 0.00 5.19
454 455 7.981225 GGAAACCATGTATTACATCAAAGCATT 59.019 33.333 6.34 0.00 36.53 3.56
455 456 8.706492 AAACCATGTATTACATCAAAGCATTG 57.294 30.769 6.34 0.00 36.53 2.82
465 466 3.795688 TCAAAGCATTGAGGTCCTCTT 57.204 42.857 19.82 4.85 40.59 2.85
466 467 3.679389 TCAAAGCATTGAGGTCCTCTTC 58.321 45.455 19.82 6.34 40.59 2.87
467 468 2.393271 AAGCATTGAGGTCCTCTTCG 57.607 50.000 19.82 8.74 0.00 3.79
468 469 0.539051 AGCATTGAGGTCCTCTTCGG 59.461 55.000 19.82 8.01 0.00 4.30
470 471 1.066143 GCATTGAGGTCCTCTTCGGAA 60.066 52.381 19.82 5.79 45.32 4.30
471 472 2.420687 GCATTGAGGTCCTCTTCGGAAT 60.421 50.000 19.82 7.88 45.32 3.01
472 473 3.462021 CATTGAGGTCCTCTTCGGAATC 58.538 50.000 19.82 0.00 45.32 2.52
473 474 2.534042 TGAGGTCCTCTTCGGAATCT 57.466 50.000 19.82 0.00 45.32 2.40
474 475 2.379972 TGAGGTCCTCTTCGGAATCTC 58.620 52.381 19.82 0.00 45.32 2.75
475 476 1.684450 GAGGTCCTCTTCGGAATCTCC 59.316 57.143 12.02 0.00 45.32 3.71
484 485 4.760757 GGAATCTCCGTAGCCTGC 57.239 61.111 0.00 0.00 0.00 4.85
485 486 2.128729 GGAATCTCCGTAGCCTGCT 58.871 57.895 0.00 0.00 0.00 4.24
486 487 0.032815 GGAATCTCCGTAGCCTGCTC 59.967 60.000 0.00 0.00 0.00 4.26
487 488 1.036707 GAATCTCCGTAGCCTGCTCT 58.963 55.000 0.00 0.00 0.00 4.09
488 489 0.749649 AATCTCCGTAGCCTGCTCTG 59.250 55.000 0.00 0.00 0.00 3.35
489 490 1.743321 ATCTCCGTAGCCTGCTCTGC 61.743 60.000 0.00 0.00 0.00 4.26
491 492 1.954362 CTCCGTAGCCTGCTCTGCTT 61.954 60.000 0.00 0.00 40.23 3.91
493 494 1.875813 CGTAGCCTGCTCTGCTTCG 60.876 63.158 0.00 7.14 41.83 3.79
494 495 1.520342 GTAGCCTGCTCTGCTTCGG 60.520 63.158 0.00 0.00 40.23 4.30
495 496 2.725312 TAGCCTGCTCTGCTTCGGG 61.725 63.158 0.00 0.00 40.23 5.14
496 497 4.087892 GCCTGCTCTGCTTCGGGA 62.088 66.667 0.00 0.00 0.00 5.14
497 498 2.186384 CCTGCTCTGCTTCGGGAG 59.814 66.667 0.00 0.00 34.56 4.30
498 499 2.654079 CCTGCTCTGCTTCGGGAGT 61.654 63.158 0.00 0.00 34.86 3.85
501 502 2.659016 CTCTGCTTCGGGAGTGCA 59.341 61.111 0.00 0.00 38.28 4.57
503 504 2.345244 CTGCTTCGGGAGTGCAGT 59.655 61.111 13.80 0.00 45.56 4.40
504 505 1.739562 CTGCTTCGGGAGTGCAGTC 60.740 63.158 13.44 13.44 45.56 3.51
505 506 2.343758 GCTTCGGGAGTGCAGTCA 59.656 61.111 22.68 0.00 0.00 3.41
506 507 1.301716 GCTTCGGGAGTGCAGTCAA 60.302 57.895 22.68 8.10 0.00 3.18
507 508 1.294659 GCTTCGGGAGTGCAGTCAAG 61.295 60.000 22.68 17.41 0.00 3.02
508 509 0.671781 CTTCGGGAGTGCAGTCAAGG 60.672 60.000 22.68 10.99 0.00 3.61
509 510 2.046892 CGGGAGTGCAGTCAAGGG 60.047 66.667 22.68 5.09 0.00 3.95
511 512 1.298014 GGGAGTGCAGTCAAGGGAG 59.702 63.158 22.68 0.00 0.00 4.30
512 513 1.376553 GGAGTGCAGTCAAGGGAGC 60.377 63.158 22.68 0.00 0.00 4.70
514 515 2.743928 GTGCAGTCAAGGGAGCGG 60.744 66.667 0.00 0.00 0.00 5.52
515 516 2.922503 TGCAGTCAAGGGAGCGGA 60.923 61.111 0.00 0.00 0.00 5.54
516 517 2.125350 GCAGTCAAGGGAGCGGAG 60.125 66.667 0.00 0.00 0.00 4.63
517 518 2.650116 GCAGTCAAGGGAGCGGAGA 61.650 63.158 0.00 0.00 0.00 3.71
518 519 1.515020 CAGTCAAGGGAGCGGAGAG 59.485 63.158 0.00 0.00 0.00 3.20
519 520 1.684049 AGTCAAGGGAGCGGAGAGG 60.684 63.158 0.00 0.00 0.00 3.69
520 521 1.682684 GTCAAGGGAGCGGAGAGGA 60.683 63.158 0.00 0.00 0.00 3.71
521 522 1.078528 TCAAGGGAGCGGAGAGGAA 59.921 57.895 0.00 0.00 0.00 3.36
539 592 4.087182 AGGAACCGTCAGAGAGAAATACA 58.913 43.478 0.00 0.00 0.00 2.29
543 596 7.039882 GGAACCGTCAGAGAGAAATACATTTA 58.960 38.462 0.00 0.00 0.00 1.40
545 598 9.745880 GAACCGTCAGAGAGAAATACATTTATA 57.254 33.333 0.00 0.00 0.00 0.98
548 601 9.698309 CCGTCAGAGAGAAATACATTTATACAT 57.302 33.333 0.00 0.00 0.00 2.29
557 610 9.131791 AGAAATACATTTATACATCAACACCCC 57.868 33.333 0.00 0.00 0.00 4.95
558 611 9.131791 GAAATACATTTATACATCAACACCCCT 57.868 33.333 0.00 0.00 0.00 4.79
559 612 8.463930 AATACATTTATACATCAACACCCCTG 57.536 34.615 0.00 0.00 0.00 4.45
560 613 4.644685 ACATTTATACATCAACACCCCTGC 59.355 41.667 0.00 0.00 0.00 4.85
561 614 4.584638 TTTATACATCAACACCCCTGCT 57.415 40.909 0.00 0.00 0.00 4.24
562 615 4.584638 TTATACATCAACACCCCTGCTT 57.415 40.909 0.00 0.00 0.00 3.91
563 616 2.489938 TACATCAACACCCCTGCTTC 57.510 50.000 0.00 0.00 0.00 3.86
564 617 0.606401 ACATCAACACCCCTGCTTCG 60.606 55.000 0.00 0.00 0.00 3.79
565 618 0.321564 CATCAACACCCCTGCTTCGA 60.322 55.000 0.00 0.00 0.00 3.71
567 620 0.534203 TCAACACCCCTGCTTCGAAC 60.534 55.000 0.00 0.00 0.00 3.95
569 622 0.106918 AACACCCCTGCTTCGAACAA 60.107 50.000 0.00 0.00 0.00 2.83
570 623 0.110486 ACACCCCTGCTTCGAACAAT 59.890 50.000 0.00 0.00 0.00 2.71
571 624 1.349688 ACACCCCTGCTTCGAACAATA 59.650 47.619 0.00 0.00 0.00 1.90
573 626 1.349688 ACCCCTGCTTCGAACAATACA 59.650 47.619 0.00 0.00 0.00 2.29
574 627 2.026262 ACCCCTGCTTCGAACAATACAT 60.026 45.455 0.00 0.00 0.00 2.29
576 629 3.443681 CCCCTGCTTCGAACAATACATTT 59.556 43.478 0.00 0.00 0.00 2.32
577 630 4.638421 CCCCTGCTTCGAACAATACATTTA 59.362 41.667 0.00 0.00 0.00 1.40
579 632 6.485313 CCCCTGCTTCGAACAATACATTTATA 59.515 38.462 0.00 0.00 0.00 0.98
580 633 7.352739 CCCTGCTTCGAACAATACATTTATAC 58.647 38.462 0.00 0.00 0.00 1.47
582 635 8.559536 CCTGCTTCGAACAATACATTTATACAT 58.440 33.333 0.00 0.00 0.00 2.29
583 636 9.586150 CTGCTTCGAACAATACATTTATACATC 57.414 33.333 0.00 0.00 0.00 3.06
584 637 9.103861 TGCTTCGAACAATACATTTATACATCA 57.896 29.630 0.00 0.00 0.00 3.07
585 638 9.929722 GCTTCGAACAATACATTTATACATCAA 57.070 29.630 0.00 0.00 0.00 2.57
589 642 9.433317 CGAACAATACATTTATACATCAACACC 57.567 33.333 0.00 0.00 0.00 4.16
590 643 9.730420 GAACAATACATTTATACATCAACACCC 57.270 33.333 0.00 0.00 0.00 4.61
591 644 9.474313 AACAATACATTTATACATCAACACCCT 57.526 29.630 0.00 0.00 0.00 4.34
592 645 9.474313 ACAATACATTTATACATCAACACCCTT 57.526 29.630 0.00 0.00 0.00 3.95
593 646 9.950680 CAATACATTTATACATCAACACCCTTC 57.049 33.333 0.00 0.00 0.00 3.46
594 647 9.693739 AATACATTTATACATCAACACCCTTCA 57.306 29.630 0.00 0.00 0.00 3.02
595 648 9.866655 ATACATTTATACATCAACACCCTTCAT 57.133 29.630 0.00 0.00 0.00 2.57
596 649 7.999679 ACATTTATACATCAACACCCTTCATG 58.000 34.615 0.00 0.00 0.00 3.07
597 650 7.615365 ACATTTATACATCAACACCCTTCATGT 59.385 33.333 0.00 0.00 0.00 3.21
598 651 9.119418 CATTTATACATCAACACCCTTCATGTA 57.881 33.333 0.00 0.00 35.09 2.29
599 652 8.731275 TTTATACATCAACACCCTTCATGTAG 57.269 34.615 0.00 0.00 34.31 2.74
601 654 3.009473 ACATCAACACCCTTCATGTAGCT 59.991 43.478 0.00 0.00 0.00 3.32
602 655 3.788227 TCAACACCCTTCATGTAGCTT 57.212 42.857 0.00 0.00 0.00 3.74
603 656 3.674997 TCAACACCCTTCATGTAGCTTC 58.325 45.455 0.00 0.00 0.00 3.86
605 658 2.269940 ACACCCTTCATGTAGCTTCCT 58.730 47.619 0.00 0.00 0.00 3.36
606 659 2.237392 ACACCCTTCATGTAGCTTCCTC 59.763 50.000 0.00 0.00 0.00 3.71
607 660 2.237143 CACCCTTCATGTAGCTTCCTCA 59.763 50.000 0.00 0.00 0.00 3.86
609 662 2.158842 CCCTTCATGTAGCTTCCTCAGG 60.159 54.545 0.00 0.00 0.00 3.86
610 663 2.503356 CCTTCATGTAGCTTCCTCAGGT 59.497 50.000 0.00 0.00 36.98 4.00
611 664 3.431486 CCTTCATGTAGCTTCCTCAGGTC 60.431 52.174 0.00 0.00 34.13 3.85
612 665 3.107402 TCATGTAGCTTCCTCAGGTCT 57.893 47.619 0.00 0.00 34.13 3.85
613 666 4.251103 TCATGTAGCTTCCTCAGGTCTA 57.749 45.455 0.00 0.00 34.13 2.59
614 667 4.610333 TCATGTAGCTTCCTCAGGTCTAA 58.390 43.478 0.00 0.00 34.13 2.10
616 669 4.803098 TGTAGCTTCCTCAGGTCTAAAC 57.197 45.455 0.00 0.00 34.13 2.01
617 670 3.192844 TGTAGCTTCCTCAGGTCTAAACG 59.807 47.826 0.00 0.00 34.13 3.60
618 671 2.249139 AGCTTCCTCAGGTCTAAACGT 58.751 47.619 0.00 0.00 0.00 3.99
619 672 2.028930 AGCTTCCTCAGGTCTAAACGTG 60.029 50.000 0.00 0.00 41.56 4.49
620 673 2.029290 GCTTCCTCAGGTCTAAACGTGA 60.029 50.000 0.00 1.58 45.40 4.35
621 674 3.554337 GCTTCCTCAGGTCTAAACGTGAA 60.554 47.826 0.00 0.00 46.44 3.18
623 676 4.884668 TCCTCAGGTCTAAACGTGAATT 57.115 40.909 0.00 0.00 46.44 2.17
626 679 4.994852 CCTCAGGTCTAAACGTGAATTGAA 59.005 41.667 0.00 0.00 46.44 2.69
627 680 5.468746 CCTCAGGTCTAAACGTGAATTGAAA 59.531 40.000 0.00 0.00 46.44 2.69
628 681 6.347725 CCTCAGGTCTAAACGTGAATTGAAAG 60.348 42.308 0.00 0.00 46.44 2.62
629 682 6.053005 TCAGGTCTAAACGTGAATTGAAAGT 58.947 36.000 0.00 0.00 44.82 2.66
631 684 5.238650 AGGTCTAAACGTGAATTGAAAGTGG 59.761 40.000 0.00 0.00 0.00 4.00
632 685 5.449304 GTCTAAACGTGAATTGAAAGTGGG 58.551 41.667 0.00 0.00 0.00 4.61
633 686 2.793278 AACGTGAATTGAAAGTGGGC 57.207 45.000 0.00 0.00 0.00 5.36
635 688 1.608590 ACGTGAATTGAAAGTGGGCTG 59.391 47.619 0.00 0.00 0.00 4.85
637 690 1.340889 GTGAATTGAAAGTGGGCTGCA 59.659 47.619 0.50 0.00 0.00 4.41
638 691 2.037901 TGAATTGAAAGTGGGCTGCAA 58.962 42.857 0.50 0.00 0.00 4.08
639 692 2.633967 TGAATTGAAAGTGGGCTGCAAT 59.366 40.909 0.50 0.00 34.27 3.56
640 693 3.071312 TGAATTGAAAGTGGGCTGCAATT 59.929 39.130 0.50 0.00 40.26 2.32
642 695 4.888326 ATTGAAAGTGGGCTGCAATTTA 57.112 36.364 0.50 0.00 31.03 1.40
643 696 4.679373 TTGAAAGTGGGCTGCAATTTAA 57.321 36.364 0.50 0.00 0.00 1.52
644 697 3.988819 TGAAAGTGGGCTGCAATTTAAC 58.011 40.909 0.50 0.00 0.00 2.01
647 700 1.273327 AGTGGGCTGCAATTTAACTGC 59.727 47.619 0.50 0.00 40.35 4.40
648 701 0.243365 TGGGCTGCAATTTAACTGCG 59.757 50.000 0.50 0.00 42.97 5.18
649 702 1.078201 GGGCTGCAATTTAACTGCGC 61.078 55.000 0.00 0.00 42.97 6.09
650 703 1.078201 GGCTGCAATTTAACTGCGCC 61.078 55.000 15.28 15.28 45.26 6.53
651 704 0.388391 GCTGCAATTTAACTGCGCCA 60.388 50.000 4.18 0.00 42.97 5.69
652 705 1.621107 CTGCAATTTAACTGCGCCAG 58.379 50.000 4.18 4.99 42.97 4.85
653 706 0.388391 TGCAATTTAACTGCGCCAGC 60.388 50.000 4.18 0.00 42.97 4.85
654 707 1.078201 GCAATTTAACTGCGCCAGCC 61.078 55.000 4.18 0.00 44.33 4.85
656 709 0.958382 AATTTAACTGCGCCAGCCGA 60.958 50.000 4.18 0.00 44.33 5.54
657 710 1.369091 ATTTAACTGCGCCAGCCGAG 61.369 55.000 4.18 0.00 44.33 4.63
666 719 1.004440 GCCAGCCGAGTCTTGAACT 60.004 57.895 0.00 0.00 42.42 3.01
688 741 3.528597 AAGACCTCTTGGCTTCGATAC 57.471 47.619 0.00 0.00 34.38 2.24
691 744 2.103263 GACCTCTTGGCTTCGATACCAT 59.897 50.000 7.67 0.00 35.42 3.55
692 745 2.158900 ACCTCTTGGCTTCGATACCATG 60.159 50.000 7.67 9.96 35.42 3.66
693 746 2.158900 CCTCTTGGCTTCGATACCATGT 60.159 50.000 15.45 0.00 35.42 3.21
694 747 3.069586 CCTCTTGGCTTCGATACCATGTA 59.930 47.826 15.45 0.39 35.42 2.29
695 748 4.442893 CCTCTTGGCTTCGATACCATGTAA 60.443 45.833 15.45 0.11 35.42 2.41
698 751 5.353123 TCTTGGCTTCGATACCATGTAAAAC 59.647 40.000 15.45 0.00 35.42 2.43
699 752 4.839121 TGGCTTCGATACCATGTAAAACT 58.161 39.130 2.91 0.00 0.00 2.66
700 753 4.634004 TGGCTTCGATACCATGTAAAACTG 59.366 41.667 2.91 0.00 0.00 3.16
701 754 4.495844 GGCTTCGATACCATGTAAAACTGC 60.496 45.833 0.00 0.00 0.00 4.40
702 755 4.094294 GCTTCGATACCATGTAAAACTGCA 59.906 41.667 0.00 0.00 0.00 4.41
703 756 5.539582 TTCGATACCATGTAAAACTGCAC 57.460 39.130 0.00 0.00 0.00 4.57
705 758 3.680789 GATACCATGTAAAACTGCACGC 58.319 45.455 0.00 0.00 0.00 5.34
706 759 1.313772 ACCATGTAAAACTGCACGCA 58.686 45.000 0.00 0.00 0.00 5.24
708 761 1.266718 CCATGTAAAACTGCACGCACT 59.733 47.619 0.00 0.00 0.00 4.40
710 763 3.424829 CCATGTAAAACTGCACGCACTAG 60.425 47.826 0.00 0.00 0.00 2.57
711 764 1.529438 TGTAAAACTGCACGCACTAGC 59.471 47.619 0.00 0.00 37.42 3.42
712 765 1.136057 GTAAAACTGCACGCACTAGCC 60.136 52.381 0.00 0.00 37.52 3.93
713 766 0.817634 AAAACTGCACGCACTAGCCA 60.818 50.000 0.00 0.00 37.52 4.75
714 767 1.230635 AAACTGCACGCACTAGCCAG 61.231 55.000 0.00 0.00 37.52 4.85
715 768 2.047844 CTGCACGCACTAGCCAGT 60.048 61.111 0.00 0.00 37.52 4.00
716 769 1.669115 CTGCACGCACTAGCCAGTT 60.669 57.895 0.00 0.00 37.52 3.16
717 770 1.630244 CTGCACGCACTAGCCAGTTC 61.630 60.000 0.00 0.00 37.52 3.01
718 771 1.667830 GCACGCACTAGCCAGTTCA 60.668 57.895 0.00 0.00 37.52 3.18
720 773 1.004918 ACGCACTAGCCAGTTCACC 60.005 57.895 0.00 0.00 37.52 4.02
722 775 1.374947 GCACTAGCCAGTTCACCCA 59.625 57.895 0.00 0.00 30.46 4.51
724 777 0.396435 CACTAGCCAGTTCACCCACA 59.604 55.000 0.00 0.00 30.46 4.17
725 778 1.136828 ACTAGCCAGTTCACCCACAA 58.863 50.000 0.00 0.00 0.00 3.33
726 779 1.072331 ACTAGCCAGTTCACCCACAAG 59.928 52.381 0.00 0.00 0.00 3.16
729 782 1.109323 GCCAGTTCACCCACAAGCTT 61.109 55.000 0.00 0.00 0.00 3.74
730 783 1.817740 GCCAGTTCACCCACAAGCTTA 60.818 52.381 0.00 0.00 0.00 3.09
731 784 2.582052 CCAGTTCACCCACAAGCTTAA 58.418 47.619 0.00 0.00 0.00 1.85
744 797 2.175236 GCTTAAGCTGGTGAGGTGC 58.825 57.895 20.38 0.00 38.21 5.01
745 798 1.308783 GCTTAAGCTGGTGAGGTGCC 61.309 60.000 20.38 0.00 38.21 5.01
747 800 1.555075 CTTAAGCTGGTGAGGTGCCTA 59.445 52.381 0.00 0.00 0.00 3.93
748 801 1.195115 TAAGCTGGTGAGGTGCCTAG 58.805 55.000 0.00 0.00 0.00 3.02
750 803 1.219393 GCTGGTGAGGTGCCTAGTC 59.781 63.158 0.00 0.00 0.00 2.59
751 804 1.261238 GCTGGTGAGGTGCCTAGTCT 61.261 60.000 0.00 0.00 0.00 3.24
754 807 1.203187 TGGTGAGGTGCCTAGTCTCTT 60.203 52.381 0.00 0.00 0.00 2.85
755 808 1.478916 GGTGAGGTGCCTAGTCTCTTC 59.521 57.143 0.00 0.00 0.00 2.87
757 810 2.165437 GTGAGGTGCCTAGTCTCTTCTG 59.835 54.545 0.00 0.00 0.00 3.02
758 811 2.225142 TGAGGTGCCTAGTCTCTTCTGT 60.225 50.000 0.00 0.00 0.00 3.41
760 813 2.171840 GGTGCCTAGTCTCTTCTGTCA 58.828 52.381 0.00 0.00 0.00 3.58
764 817 3.951037 TGCCTAGTCTCTTCTGTCAGATC 59.049 47.826 2.68 0.00 0.00 2.75
767 820 3.080300 AGTCTCTTCTGTCAGATCGGT 57.920 47.619 2.68 0.00 0.00 4.69
769 822 3.013921 GTCTCTTCTGTCAGATCGGTCT 58.986 50.000 2.68 0.00 34.14 3.85
770 823 3.442273 GTCTCTTCTGTCAGATCGGTCTT 59.558 47.826 2.68 0.00 30.42 3.01
772 825 4.524714 TCTCTTCTGTCAGATCGGTCTTTT 59.475 41.667 2.68 0.00 30.42 2.27
773 826 4.560128 TCTTCTGTCAGATCGGTCTTTTG 58.440 43.478 2.68 0.00 30.42 2.44
774 827 4.280929 TCTTCTGTCAGATCGGTCTTTTGA 59.719 41.667 2.68 0.00 30.42 2.69
775 828 4.808414 TCTGTCAGATCGGTCTTTTGAT 57.192 40.909 0.00 0.00 30.42 2.57
776 829 5.152623 TCTGTCAGATCGGTCTTTTGATT 57.847 39.130 0.00 0.00 30.42 2.57
777 830 4.931601 TCTGTCAGATCGGTCTTTTGATTG 59.068 41.667 0.00 0.00 30.42 2.67
778 831 3.436704 TGTCAGATCGGTCTTTTGATTGC 59.563 43.478 0.00 0.00 30.42 3.56
780 833 4.095483 GTCAGATCGGTCTTTTGATTGCAT 59.905 41.667 0.00 0.00 30.42 3.96
783 836 6.037500 TCAGATCGGTCTTTTGATTGCATTAG 59.962 38.462 0.00 0.00 30.42 1.73
784 837 4.355543 TCGGTCTTTTGATTGCATTAGC 57.644 40.909 0.00 0.00 42.57 3.09
785 838 4.009675 TCGGTCTTTTGATTGCATTAGCT 58.990 39.130 0.00 0.00 42.74 3.32
786 839 5.182487 TCGGTCTTTTGATTGCATTAGCTA 58.818 37.500 0.00 0.00 42.74 3.32
787 840 5.294306 TCGGTCTTTTGATTGCATTAGCTAG 59.706 40.000 0.00 0.00 42.74 3.42
789 842 6.510799 CGGTCTTTTGATTGCATTAGCTAGAG 60.511 42.308 0.00 0.00 42.74 2.43
790 843 6.197981 GTCTTTTGATTGCATTAGCTAGAGC 58.802 40.000 11.35 11.35 42.74 4.09
801 857 5.469421 GCATTAGCTAGAGCATCATCTTTGT 59.531 40.000 12.89 0.00 45.16 2.83
805 861 9.618890 ATTAGCTAGAGCATCATCTTTGTTTTA 57.381 29.630 4.01 0.00 45.16 1.52
816 872 7.697352 TCATCTTTGTTTTATGTTGCTTGTG 57.303 32.000 0.00 0.00 0.00 3.33
829 885 1.797388 GCTTGTGTGCGTTGCGTTTC 61.797 55.000 0.00 0.00 0.00 2.78
832 888 0.169230 TGTGTGCGTTGCGTTTCTTT 59.831 45.000 0.00 0.00 0.00 2.52
854 932 8.210946 TCTTTGCTACAAGTAATGTATGCCTAT 58.789 33.333 0.00 0.00 43.42 2.57
869 947 9.672673 ATGTATGCCTATGGTTTATACATCTTC 57.327 33.333 0.00 0.00 39.46 2.87
1049 1132 0.835276 GTTATCCCCCACGCTACCTT 59.165 55.000 0.00 0.00 0.00 3.50
1070 1153 1.375396 CCTCAAATCCACGGCGTCA 60.375 57.895 10.85 0.00 0.00 4.35
1075 1158 0.319727 AAATCCACGGCGTCACGTTA 60.320 50.000 10.85 0.00 46.25 3.18
1089 1172 0.896940 ACGTTACTGCCGGGAGAGAA 60.897 55.000 31.46 19.39 0.00 2.87
1231 1401 4.451652 GAGGCTTGCGCGCTGTTC 62.452 66.667 33.29 20.07 36.88 3.18
1305 1485 2.203788 AACCTCGAGCCACCCTGA 60.204 61.111 6.99 0.00 0.00 3.86
1352 1532 1.851021 CGATTCCTGTGCGCACCAAA 61.851 55.000 35.72 25.79 0.00 3.28
1368 1559 3.078837 ACCAAAGCAATACCGGTAACTG 58.921 45.455 20.22 19.08 0.00 3.16
1398 1589 9.691795 CTAAAACATGTAATCGCGTGTAAATTA 57.308 29.630 5.77 0.00 37.60 1.40
1413 1604 7.273381 GCGTGTAAATTATGAGCTTTCAATTGT 59.727 33.333 5.13 0.00 0.00 2.71
1533 1724 5.985530 TGTGAGTGTCTAGACAAGTGAATTG 59.014 40.000 26.74 0.00 43.77 2.32
1569 1760 8.030106 GTCAGTTCTATATATGCAGTAGTTCCC 58.970 40.741 0.00 0.00 0.00 3.97
1572 1763 8.368668 AGTTCTATATATGCAGTAGTTCCCAAC 58.631 37.037 0.00 0.00 0.00 3.77
1593 1784 3.118738 ACGTAGAACTAATTCCAGGCCAG 60.119 47.826 5.01 0.00 35.18 4.85
1598 1789 6.079712 AGAACTAATTCCAGGCCAGTAATT 57.920 37.500 5.01 4.49 35.18 1.40
1605 1796 2.311542 TCCAGGCCAGTAATTGTTGGAT 59.688 45.455 5.01 0.07 36.55 3.41
1872 2063 2.067365 ACTGGGGAAAACACAAGACC 57.933 50.000 0.00 0.00 27.29 3.85
1897 2088 1.224965 GATCGGCCTCTGCATTTCTC 58.775 55.000 0.00 0.00 40.13 2.87
2193 2392 0.031585 TGACAAGAACACGTCGGGAG 59.968 55.000 0.00 0.00 34.78 4.30
2540 2739 1.507713 CGAACGATTGCAGCACACG 60.508 57.895 15.92 15.92 0.00 4.49
2580 2779 3.379372 CCTATGAGGCATGAAAGTGTTGG 59.621 47.826 0.00 0.00 0.00 3.77
2586 2785 5.304101 TGAGGCATGAAAGTGTTGGTTTTAT 59.696 36.000 0.00 0.00 0.00 1.40
2595 2794 7.973388 TGAAAGTGTTGGTTTTATTCAGAGTTG 59.027 33.333 0.00 0.00 0.00 3.16
2676 2875 1.671742 GCCGAGGACTTGGAAGACA 59.328 57.895 9.83 0.00 36.15 3.41
2680 2879 0.390472 GAGGACTTGGAAGACAGCGG 60.390 60.000 0.00 0.00 0.00 5.52
2938 3161 1.874345 CTCTACAACAGGGCCGTCGT 61.874 60.000 0.00 0.00 0.00 4.34
3215 3440 3.181485 CGTTCTACTTCCTGTCCATCTCC 60.181 52.174 0.00 0.00 0.00 3.71
3359 3584 0.592637 TTGTCGCCATCACTTTGCTG 59.407 50.000 0.00 0.00 0.00 4.41
3371 3596 1.476488 ACTTTGCTGAACTTTGCCGTT 59.524 42.857 0.00 0.00 0.00 4.44
3552 3777 2.635427 GAGGGTGAAGAGGTGAAAGAGT 59.365 50.000 0.00 0.00 0.00 3.24
3735 4043 6.036408 GGTAGAGAAAATTGGCATTGATTTGC 59.964 38.462 0.00 0.00 42.01 3.68
4008 4316 3.475932 TGGCTCACCAGGTCTTACT 57.524 52.632 0.00 0.00 42.67 2.24
4050 4358 9.322769 GTCTCTATTGGGGGAACTAAATATAGA 57.677 37.037 0.00 0.00 33.15 1.98
4211 4521 8.507249 ACTGATTTTACTAGAAATGAACTGCAC 58.493 33.333 0.00 0.00 29.75 4.57
4334 4645 6.763135 GTCAATGTTGAGATTGGCATCTACTA 59.237 38.462 1.13 0.00 40.14 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.413310 TCCTCAAACTTAATCCGCCC 57.587 50.000 0.00 0.00 0.00 6.13
3 4 4.254492 ACTCTTCCTCAAACTTAATCCGC 58.746 43.478 0.00 0.00 0.00 5.54
5 6 7.929941 AATGACTCTTCCTCAAACTTAATCC 57.070 36.000 0.00 0.00 0.00 3.01
29 30 7.063544 GCACATTACGGGTATTATTTGCAAAAA 59.936 33.333 17.19 11.93 0.00 1.94
30 31 6.531948 GCACATTACGGGTATTATTTGCAAAA 59.468 34.615 17.19 0.11 0.00 2.44
31 32 6.037098 GCACATTACGGGTATTATTTGCAAA 58.963 36.000 15.44 15.44 0.00 3.68
32 33 5.583495 GCACATTACGGGTATTATTTGCAA 58.417 37.500 0.00 0.00 0.00 4.08
33 34 4.260825 CGCACATTACGGGTATTATTTGCA 60.261 41.667 0.00 0.00 0.00 4.08
34 35 4.215965 CGCACATTACGGGTATTATTTGC 58.784 43.478 0.00 0.00 0.00 3.68
35 36 5.412526 ACGCACATTACGGGTATTATTTG 57.587 39.130 0.00 0.00 34.00 2.32
36 37 4.209703 CGACGCACATTACGGGTATTATTT 59.790 41.667 0.00 0.00 34.00 1.40
37 38 3.737266 CGACGCACATTACGGGTATTATT 59.263 43.478 0.00 0.00 34.00 1.40
38 39 3.004629 TCGACGCACATTACGGGTATTAT 59.995 43.478 0.00 0.00 34.00 1.28
39 40 2.357323 TCGACGCACATTACGGGTATTA 59.643 45.455 0.00 0.00 34.00 0.98
40 41 1.134753 TCGACGCACATTACGGGTATT 59.865 47.619 0.00 0.00 34.00 1.89
41 42 0.740149 TCGACGCACATTACGGGTAT 59.260 50.000 0.00 0.00 34.00 2.73
42 43 0.179166 GTCGACGCACATTACGGGTA 60.179 55.000 0.00 0.00 34.00 3.69
43 44 1.444895 GTCGACGCACATTACGGGT 60.445 57.895 0.00 0.00 34.00 5.28
44 45 2.162754 GGTCGACGCACATTACGGG 61.163 63.158 9.92 0.00 34.00 5.28
45 46 1.153901 AGGTCGACGCACATTACGG 60.154 57.895 9.92 0.00 34.00 4.02
46 47 1.410737 CCAGGTCGACGCACATTACG 61.411 60.000 9.92 0.00 0.00 3.18
47 48 1.082117 CCCAGGTCGACGCACATTAC 61.082 60.000 9.92 0.00 0.00 1.89
48 49 1.216977 CCCAGGTCGACGCACATTA 59.783 57.895 9.92 0.00 0.00 1.90
49 50 2.047274 CCCAGGTCGACGCACATT 60.047 61.111 9.92 0.00 0.00 2.71
50 51 4.760047 GCCCAGGTCGACGCACAT 62.760 66.667 9.92 0.00 0.00 3.21
52 53 4.681978 AAGCCCAGGTCGACGCAC 62.682 66.667 9.92 0.00 0.00 5.34
53 54 3.936203 AAAGCCCAGGTCGACGCA 61.936 61.111 9.92 0.00 0.00 5.24
54 55 3.423154 CAAAGCCCAGGTCGACGC 61.423 66.667 9.92 7.28 0.00 5.19
55 56 0.673644 ATTCAAAGCCCAGGTCGACG 60.674 55.000 9.92 0.00 0.00 5.12
56 57 1.534729 AATTCAAAGCCCAGGTCGAC 58.465 50.000 7.13 7.13 0.00 4.20
57 58 2.286365 AAATTCAAAGCCCAGGTCGA 57.714 45.000 0.00 0.00 0.00 4.20
58 59 2.352715 GGAAAATTCAAAGCCCAGGTCG 60.353 50.000 0.00 0.00 0.00 4.79
59 60 2.899900 AGGAAAATTCAAAGCCCAGGTC 59.100 45.455 0.00 0.00 0.00 3.85
60 61 2.634453 CAGGAAAATTCAAAGCCCAGGT 59.366 45.455 0.00 0.00 0.00 4.00
61 62 2.613725 GCAGGAAAATTCAAAGCCCAGG 60.614 50.000 0.00 0.00 0.00 4.45
62 63 2.613725 GGCAGGAAAATTCAAAGCCCAG 60.614 50.000 10.02 0.00 35.34 4.45
63 64 1.347378 GGCAGGAAAATTCAAAGCCCA 59.653 47.619 10.02 0.00 35.34 5.36
64 65 1.625315 AGGCAGGAAAATTCAAAGCCC 59.375 47.619 14.89 0.00 39.30 5.19
65 66 2.691927 CAGGCAGGAAAATTCAAAGCC 58.308 47.619 12.15 12.15 39.00 4.35
66 67 2.071540 GCAGGCAGGAAAATTCAAAGC 58.928 47.619 0.00 0.00 0.00 3.51
67 68 3.389925 TGCAGGCAGGAAAATTCAAAG 57.610 42.857 0.00 0.00 0.00 2.77
68 69 3.666274 CATGCAGGCAGGAAAATTCAAA 58.334 40.909 0.00 0.00 0.00 2.69
69 70 2.613474 GCATGCAGGCAGGAAAATTCAA 60.613 45.455 20.11 0.00 0.00 2.69
70 71 1.066716 GCATGCAGGCAGGAAAATTCA 60.067 47.619 20.11 0.00 0.00 2.57
71 72 1.648504 GCATGCAGGCAGGAAAATTC 58.351 50.000 20.11 0.00 0.00 2.17
72 73 0.108520 CGCATGCAGGCAGGAAAATT 60.109 50.000 24.53 0.00 0.00 1.82
73 74 1.252904 ACGCATGCAGGCAGGAAAAT 61.253 50.000 24.53 0.00 0.00 1.82
74 75 1.865788 GACGCATGCAGGCAGGAAAA 61.866 55.000 24.53 0.00 0.00 2.29
75 76 2.282391 ACGCATGCAGGCAGGAAA 60.282 55.556 24.53 0.00 0.00 3.13
76 77 2.747460 GACGCATGCAGGCAGGAA 60.747 61.111 24.53 0.00 0.00 3.36
77 78 3.670637 GAGACGCATGCAGGCAGGA 62.671 63.158 24.53 0.00 0.00 3.86
78 79 3.200593 GAGACGCATGCAGGCAGG 61.201 66.667 24.53 10.53 0.00 4.85
79 80 2.435410 TGAGACGCATGCAGGCAG 60.435 61.111 24.53 17.74 0.00 4.85
80 81 2.248086 ATCTGAGACGCATGCAGGCA 62.248 55.000 24.53 8.79 0.00 4.75
81 82 0.249615 TATCTGAGACGCATGCAGGC 60.250 55.000 19.57 14.55 0.00 4.85
82 83 1.068281 AGTATCTGAGACGCATGCAGG 59.932 52.381 19.57 4.59 0.00 4.85
83 84 2.125685 CAGTATCTGAGACGCATGCAG 58.874 52.381 19.57 12.98 32.44 4.41
84 85 1.803998 GCAGTATCTGAGACGCATGCA 60.804 52.381 19.57 0.00 32.44 3.96
85 86 0.857935 GCAGTATCTGAGACGCATGC 59.142 55.000 7.91 7.91 32.44 4.06
86 87 2.505628 AGCAGTATCTGAGACGCATG 57.494 50.000 16.86 4.51 32.44 4.06
87 88 2.030363 GCTAGCAGTATCTGAGACGCAT 60.030 50.000 10.63 8.26 32.44 4.73
88 89 1.335182 GCTAGCAGTATCTGAGACGCA 59.665 52.381 10.63 6.62 32.44 5.24
89 90 1.661743 CGCTAGCAGTATCTGAGACGC 60.662 57.143 16.45 9.94 32.44 5.19
90 91 1.069568 CCGCTAGCAGTATCTGAGACG 60.070 57.143 16.45 0.00 32.44 4.18
91 92 1.268352 CCCGCTAGCAGTATCTGAGAC 59.732 57.143 16.45 0.00 32.44 3.36
92 93 1.610363 CCCGCTAGCAGTATCTGAGA 58.390 55.000 16.45 0.00 32.44 3.27
93 94 0.600557 CCCCGCTAGCAGTATCTGAG 59.399 60.000 16.45 0.00 32.44 3.35
94 95 1.464376 GCCCCGCTAGCAGTATCTGA 61.464 60.000 16.45 0.00 32.44 3.27
95 96 1.005630 GCCCCGCTAGCAGTATCTG 60.006 63.158 16.45 0.00 34.12 2.90
96 97 2.565645 CGCCCCGCTAGCAGTATCT 61.566 63.158 16.45 0.00 0.00 1.98
97 98 2.049063 CGCCCCGCTAGCAGTATC 60.049 66.667 16.45 0.00 0.00 2.24
98 99 2.520982 TCGCCCCGCTAGCAGTAT 60.521 61.111 16.45 0.00 0.00 2.12
99 100 3.217017 CTCGCCCCGCTAGCAGTA 61.217 66.667 16.45 0.00 0.00 2.74
101 102 4.577246 GACTCGCCCCGCTAGCAG 62.577 72.222 16.45 2.56 0.00 4.24
103 104 4.577246 CTGACTCGCCCCGCTAGC 62.577 72.222 4.06 4.06 0.00 3.42
104 105 3.127352 GACTGACTCGCCCCGCTAG 62.127 68.421 0.00 0.00 0.00 3.42
105 106 3.138798 GACTGACTCGCCCCGCTA 61.139 66.667 0.00 0.00 0.00 4.26
114 115 3.575351 AACAGCGCCGGACTGACTC 62.575 63.158 26.31 0.00 38.55 3.36
115 116 2.660258 AAAACAGCGCCGGACTGACT 62.660 55.000 26.31 13.06 38.55 3.41
116 117 0.947180 TAAAACAGCGCCGGACTGAC 60.947 55.000 26.31 0.00 38.55 3.51
117 118 0.669318 CTAAAACAGCGCCGGACTGA 60.669 55.000 26.31 7.65 38.55 3.41
118 119 1.787847 CTAAAACAGCGCCGGACTG 59.212 57.895 20.00 20.00 41.08 3.51
119 120 2.033194 GCTAAAACAGCGCCGGACT 61.033 57.895 5.05 0.00 41.37 3.85
120 121 2.479198 GCTAAAACAGCGCCGGAC 59.521 61.111 5.05 0.00 41.37 4.79
128 129 1.909700 TGCAGGAAGGGCTAAAACAG 58.090 50.000 0.00 0.00 0.00 3.16
129 130 2.373335 TTGCAGGAAGGGCTAAAACA 57.627 45.000 0.00 0.00 0.00 2.83
130 131 2.166459 GGATTGCAGGAAGGGCTAAAAC 59.834 50.000 0.00 0.00 0.00 2.43
131 132 2.456577 GGATTGCAGGAAGGGCTAAAA 58.543 47.619 0.00 0.00 0.00 1.52
132 133 1.681780 CGGATTGCAGGAAGGGCTAAA 60.682 52.381 0.00 0.00 0.00 1.85
133 134 0.107214 CGGATTGCAGGAAGGGCTAA 60.107 55.000 0.00 0.00 0.00 3.09
134 135 0.980754 TCGGATTGCAGGAAGGGCTA 60.981 55.000 0.00 0.00 0.00 3.93
135 136 2.273449 CGGATTGCAGGAAGGGCT 59.727 61.111 0.00 0.00 0.00 5.19
136 137 2.115291 GTCGGATTGCAGGAAGGGC 61.115 63.158 0.00 0.00 0.00 5.19
137 138 0.107017 ATGTCGGATTGCAGGAAGGG 60.107 55.000 0.00 0.00 0.00 3.95
138 139 1.019673 CATGTCGGATTGCAGGAAGG 58.980 55.000 0.00 0.00 0.00 3.46
139 140 1.019673 CCATGTCGGATTGCAGGAAG 58.980 55.000 0.00 0.00 36.56 3.46
140 141 1.031571 GCCATGTCGGATTGCAGGAA 61.032 55.000 0.00 0.00 36.56 3.36
141 142 1.451927 GCCATGTCGGATTGCAGGA 60.452 57.895 0.00 0.00 36.56 3.86
142 143 2.484062 GGCCATGTCGGATTGCAGG 61.484 63.158 0.00 0.00 36.56 4.85
143 144 2.827051 CGGCCATGTCGGATTGCAG 61.827 63.158 2.24 0.00 36.56 4.41
144 145 2.823593 CGGCCATGTCGGATTGCA 60.824 61.111 2.24 0.00 36.56 4.08
151 152 1.282248 CTATTACGCCGGCCATGTCG 61.282 60.000 23.46 8.22 0.00 4.35
152 153 0.249741 ACTATTACGCCGGCCATGTC 60.250 55.000 23.46 0.00 0.00 3.06
153 154 0.531974 CACTATTACGCCGGCCATGT 60.532 55.000 23.46 16.13 0.00 3.21
154 155 1.227999 CCACTATTACGCCGGCCATG 61.228 60.000 23.46 9.96 0.00 3.66
155 156 1.070786 CCACTATTACGCCGGCCAT 59.929 57.895 23.46 12.52 0.00 4.40
156 157 2.502093 CCACTATTACGCCGGCCA 59.498 61.111 23.46 5.97 0.00 5.36
157 158 2.108278 ATCCCACTATTACGCCGGCC 62.108 60.000 23.46 2.84 0.00 6.13
158 159 0.250166 AATCCCACTATTACGCCGGC 60.250 55.000 19.07 19.07 0.00 6.13
159 160 2.929592 GCTAATCCCACTATTACGCCGG 60.930 54.545 0.00 0.00 0.00 6.13
160 161 2.334838 GCTAATCCCACTATTACGCCG 58.665 52.381 0.00 0.00 0.00 6.46
161 162 2.302157 AGGCTAATCCCACTATTACGCC 59.698 50.000 0.00 0.00 36.69 5.68
162 163 3.258622 AGAGGCTAATCCCACTATTACGC 59.741 47.826 0.00 0.00 34.51 4.42
163 164 4.767928 AGAGAGGCTAATCCCACTATTACG 59.232 45.833 0.00 0.00 34.51 3.18
164 165 5.186215 GGAGAGAGGCTAATCCCACTATTAC 59.814 48.000 0.00 0.00 34.51 1.89
165 166 5.076598 AGGAGAGAGGCTAATCCCACTATTA 59.923 44.000 8.15 0.00 34.51 0.98
166 167 4.140567 AGGAGAGAGGCTAATCCCACTATT 60.141 45.833 8.15 0.00 34.51 1.73
167 168 3.404425 AGGAGAGAGGCTAATCCCACTAT 59.596 47.826 8.15 0.00 34.51 2.12
168 169 2.792370 AGGAGAGAGGCTAATCCCACTA 59.208 50.000 8.15 0.00 34.51 2.74
169 170 1.578215 AGGAGAGAGGCTAATCCCACT 59.422 52.381 8.15 0.00 34.51 4.00
170 171 2.095604 AGGAGAGAGGCTAATCCCAC 57.904 55.000 8.15 0.00 34.51 4.61
171 172 2.774234 CAAAGGAGAGAGGCTAATCCCA 59.226 50.000 8.15 0.00 34.51 4.37
172 173 2.486370 GCAAAGGAGAGAGGCTAATCCC 60.486 54.545 8.15 4.31 34.51 3.85
173 174 2.171448 TGCAAAGGAGAGAGGCTAATCC 59.829 50.000 4.38 4.38 0.00 3.01
174 175 3.465871 CTGCAAAGGAGAGAGGCTAATC 58.534 50.000 0.00 0.00 0.00 1.75
175 176 2.421248 GCTGCAAAGGAGAGAGGCTAAT 60.421 50.000 0.00 0.00 0.00 1.73
176 177 1.065854 GCTGCAAAGGAGAGAGGCTAA 60.066 52.381 0.00 0.00 0.00 3.09
177 178 0.539051 GCTGCAAAGGAGAGAGGCTA 59.461 55.000 0.00 0.00 0.00 3.93
178 179 1.200092 AGCTGCAAAGGAGAGAGGCT 61.200 55.000 1.02 0.00 0.00 4.58
179 180 0.322366 AAGCTGCAAAGGAGAGAGGC 60.322 55.000 1.02 0.00 0.00 4.70
180 181 1.811359 CAAAGCTGCAAAGGAGAGAGG 59.189 52.381 1.02 0.00 0.00 3.69
193 194 5.470368 TGACAGTTACTAGTAGCAAAGCTG 58.530 41.667 17.72 11.24 40.10 4.24
194 195 5.715070 CTGACAGTTACTAGTAGCAAAGCT 58.285 41.667 17.72 0.00 43.41 3.74
195 196 4.327627 GCTGACAGTTACTAGTAGCAAAGC 59.672 45.833 17.72 15.08 0.00 3.51
196 197 4.559251 CGCTGACAGTTACTAGTAGCAAAG 59.441 45.833 17.72 9.99 0.00 2.77
197 198 4.022589 ACGCTGACAGTTACTAGTAGCAAA 60.023 41.667 17.72 0.00 0.00 3.68
198 199 3.504906 ACGCTGACAGTTACTAGTAGCAA 59.495 43.478 17.72 0.00 0.00 3.91
199 200 3.079578 ACGCTGACAGTTACTAGTAGCA 58.920 45.455 17.72 5.68 0.00 3.49
200 201 3.761311 ACGCTGACAGTTACTAGTAGC 57.239 47.619 8.59 8.59 0.00 3.58
201 202 5.044428 ACAACGCTGACAGTTACTAGTAG 57.956 43.478 3.99 0.00 0.00 2.57
202 203 4.516321 TGACAACGCTGACAGTTACTAGTA 59.484 41.667 3.99 0.00 0.00 1.82
203 204 3.317149 TGACAACGCTGACAGTTACTAGT 59.683 43.478 3.99 0.00 0.00 2.57
204 205 3.897325 TGACAACGCTGACAGTTACTAG 58.103 45.455 3.99 0.00 0.00 2.57
205 206 3.994204 TGACAACGCTGACAGTTACTA 57.006 42.857 3.99 0.00 0.00 1.82
206 207 2.882927 TGACAACGCTGACAGTTACT 57.117 45.000 3.99 0.00 0.00 2.24
207 208 2.800544 ACATGACAACGCTGACAGTTAC 59.199 45.455 0.00 0.00 30.75 2.50
208 209 3.057019 GACATGACAACGCTGACAGTTA 58.943 45.455 0.00 0.00 30.75 2.24
209 210 1.867233 GACATGACAACGCTGACAGTT 59.133 47.619 0.00 0.00 30.75 3.16
210 211 1.069204 AGACATGACAACGCTGACAGT 59.931 47.619 0.00 0.00 30.75 3.55
211 212 1.723542 GAGACATGACAACGCTGACAG 59.276 52.381 0.00 0.00 30.75 3.51
212 213 1.605457 GGAGACATGACAACGCTGACA 60.605 52.381 0.00 0.00 0.00 3.58
213 214 1.071605 GGAGACATGACAACGCTGAC 58.928 55.000 0.00 0.00 0.00 3.51
214 215 0.678950 TGGAGACATGACAACGCTGA 59.321 50.000 0.00 0.00 33.40 4.26
215 216 3.215642 TGGAGACATGACAACGCTG 57.784 52.632 0.00 0.00 33.40 5.18
247 248 3.192422 TCAAATTGGTAAATGGGACGCAG 59.808 43.478 0.00 0.00 0.00 5.18
255 256 6.578545 CAGTTCGACAGTCAAATTGGTAAATG 59.421 38.462 0.41 0.00 0.00 2.32
272 273 3.898529 AGTACAGCAACTACAGTTCGAC 58.101 45.455 0.00 0.00 35.83 4.20
276 277 2.969950 TGGGAGTACAGCAACTACAGTT 59.030 45.455 0.00 0.00 39.12 3.16
282 283 2.172717 ACTGTTTGGGAGTACAGCAACT 59.827 45.455 0.00 0.00 44.34 3.16
304 305 1.271054 ACATCCAGCGAGAACAGCTTT 60.271 47.619 0.00 0.00 44.06 3.51
314 315 1.522092 CTAGGGCAACATCCAGCGA 59.478 57.895 0.00 0.00 39.74 4.93
315 316 1.524621 CCTAGGGCAACATCCAGCG 60.525 63.158 0.00 0.00 39.74 5.18
316 317 4.567318 CCTAGGGCAACATCCAGC 57.433 61.111 0.00 0.00 39.74 4.85
330 331 0.676184 GACGGCTCAGATGATGCCTA 59.324 55.000 16.20 0.00 44.09 3.93
368 369 7.120579 ACATTTCGTCATAAAGGCAGAATTGTA 59.879 33.333 0.00 0.00 32.65 2.41
370 371 6.324819 ACATTTCGTCATAAAGGCAGAATTG 58.675 36.000 0.00 0.00 0.00 2.32
426 427 7.831690 TGCTTTGATGTAATACATGGTTTCCTA 59.168 33.333 11.03 0.00 39.27 2.94
427 428 6.663093 TGCTTTGATGTAATACATGGTTTCCT 59.337 34.615 11.03 0.00 39.27 3.36
430 431 8.530311 TCAATGCTTTGATGTAATACATGGTTT 58.470 29.630 11.03 0.00 39.27 3.27
433 434 7.143340 CCTCAATGCTTTGATGTAATACATGG 58.857 38.462 11.03 5.71 39.27 3.66
436 437 6.318648 GGACCTCAATGCTTTGATGTAATACA 59.681 38.462 18.72 0.00 39.76 2.29
467 468 0.032815 GAGCAGGCTACGGAGATTCC 59.967 60.000 0.00 0.00 0.00 3.01
468 469 1.036707 AGAGCAGGCTACGGAGATTC 58.963 55.000 0.00 0.00 0.00 2.52
470 471 1.743321 GCAGAGCAGGCTACGGAGAT 61.743 60.000 0.00 0.00 0.00 2.75
471 472 2.418910 GCAGAGCAGGCTACGGAGA 61.419 63.158 0.00 0.00 0.00 3.71
472 473 1.954362 AAGCAGAGCAGGCTACGGAG 61.954 60.000 0.00 0.00 41.66 4.63
473 474 1.949847 GAAGCAGAGCAGGCTACGGA 61.950 60.000 0.00 0.00 41.66 4.69
474 475 1.520342 GAAGCAGAGCAGGCTACGG 60.520 63.158 0.00 0.00 41.66 4.02
475 476 1.875813 CGAAGCAGAGCAGGCTACG 60.876 63.158 0.00 0.00 41.66 3.51
476 477 1.520342 CCGAAGCAGAGCAGGCTAC 60.520 63.158 0.00 0.00 41.66 3.58
477 478 2.725312 CCCGAAGCAGAGCAGGCTA 61.725 63.158 0.00 0.00 41.66 3.93
478 479 4.093291 CCCGAAGCAGAGCAGGCT 62.093 66.667 0.00 0.00 45.15 4.58
479 480 4.087892 TCCCGAAGCAGAGCAGGC 62.088 66.667 0.00 0.00 0.00 4.85
481 482 1.447489 CACTCCCGAAGCAGAGCAG 60.447 63.158 0.00 0.00 33.18 4.24
482 483 2.659016 CACTCCCGAAGCAGAGCA 59.341 61.111 0.00 0.00 33.18 4.26
483 484 2.817396 GCACTCCCGAAGCAGAGC 60.817 66.667 0.00 0.00 33.18 4.09
484 485 2.659016 TGCACTCCCGAAGCAGAG 59.341 61.111 0.00 0.00 33.75 3.35
487 488 2.038814 TTGACTGCACTCCCGAAGCA 62.039 55.000 0.00 0.00 36.72 3.91
488 489 1.294659 CTTGACTGCACTCCCGAAGC 61.295 60.000 0.00 0.00 0.00 3.86
489 490 0.671781 CCTTGACTGCACTCCCGAAG 60.672 60.000 0.00 0.00 0.00 3.79
491 492 2.583441 CCCTTGACTGCACTCCCGA 61.583 63.158 0.00 0.00 0.00 5.14
493 494 1.298014 CTCCCTTGACTGCACTCCC 59.702 63.158 0.00 0.00 0.00 4.30
494 495 1.376553 GCTCCCTTGACTGCACTCC 60.377 63.158 0.00 0.00 0.00 3.85
495 496 1.739562 CGCTCCCTTGACTGCACTC 60.740 63.158 0.00 0.00 0.00 3.51
496 497 2.345244 CGCTCCCTTGACTGCACT 59.655 61.111 0.00 0.00 0.00 4.40
497 498 2.743928 CCGCTCCCTTGACTGCAC 60.744 66.667 0.00 0.00 0.00 4.57
498 499 2.922503 TCCGCTCCCTTGACTGCA 60.923 61.111 0.00 0.00 0.00 4.41
501 502 1.684049 CCTCTCCGCTCCCTTGACT 60.684 63.158 0.00 0.00 0.00 3.41
502 503 1.258445 TTCCTCTCCGCTCCCTTGAC 61.258 60.000 0.00 0.00 0.00 3.18
503 504 1.078528 TTCCTCTCCGCTCCCTTGA 59.921 57.895 0.00 0.00 0.00 3.02
504 505 1.219393 GTTCCTCTCCGCTCCCTTG 59.781 63.158 0.00 0.00 0.00 3.61
505 506 1.990614 GGTTCCTCTCCGCTCCCTT 60.991 63.158 0.00 0.00 0.00 3.95
506 507 2.364448 GGTTCCTCTCCGCTCCCT 60.364 66.667 0.00 0.00 0.00 4.20
507 508 3.839432 CGGTTCCTCTCCGCTCCC 61.839 72.222 0.00 0.00 41.48 4.30
514 515 2.116827 TCTCTCTGACGGTTCCTCTC 57.883 55.000 0.00 0.00 0.00 3.20
515 516 2.588464 TTCTCTCTGACGGTTCCTCT 57.412 50.000 0.00 0.00 0.00 3.69
516 517 3.878160 ATTTCTCTCTGACGGTTCCTC 57.122 47.619 0.00 0.00 0.00 3.71
517 518 4.087182 TGTATTTCTCTCTGACGGTTCCT 58.913 43.478 0.00 0.00 0.00 3.36
518 519 4.451629 TGTATTTCTCTCTGACGGTTCC 57.548 45.455 0.00 0.00 0.00 3.62
519 520 6.969828 AAATGTATTTCTCTCTGACGGTTC 57.030 37.500 0.00 0.00 0.00 3.62
520 521 9.530633 GTATAAATGTATTTCTCTCTGACGGTT 57.469 33.333 0.00 0.00 0.00 4.44
521 522 8.692710 TGTATAAATGTATTTCTCTCTGACGGT 58.307 33.333 0.00 0.00 0.00 4.83
539 592 5.129368 AGCAGGGGTGTTGATGTATAAAT 57.871 39.130 0.00 0.00 0.00 1.40
543 596 2.680805 CGAAGCAGGGGTGTTGATGTAT 60.681 50.000 0.00 0.00 0.00 2.29
545 598 0.606401 CGAAGCAGGGGTGTTGATGT 60.606 55.000 0.00 0.00 0.00 3.06
548 601 0.534203 GTTCGAAGCAGGGGTGTTGA 60.534 55.000 0.00 0.00 0.00 3.18
555 608 4.701956 AAATGTATTGTTCGAAGCAGGG 57.298 40.909 0.00 0.00 0.00 4.45
556 609 7.915508 TGTATAAATGTATTGTTCGAAGCAGG 58.084 34.615 0.00 0.00 0.00 4.85
557 610 9.586150 GATGTATAAATGTATTGTTCGAAGCAG 57.414 33.333 0.00 0.00 0.00 4.24
558 611 9.103861 TGATGTATAAATGTATTGTTCGAAGCA 57.896 29.630 0.00 0.00 0.00 3.91
559 612 9.929722 TTGATGTATAAATGTATTGTTCGAAGC 57.070 29.630 0.00 0.00 0.00 3.86
563 616 9.433317 GGTGTTGATGTATAAATGTATTGTTCG 57.567 33.333 0.00 0.00 0.00 3.95
564 617 9.730420 GGGTGTTGATGTATAAATGTATTGTTC 57.270 33.333 0.00 0.00 0.00 3.18
565 618 9.474313 AGGGTGTTGATGTATAAATGTATTGTT 57.526 29.630 0.00 0.00 0.00 2.83
567 620 9.950680 GAAGGGTGTTGATGTATAAATGTATTG 57.049 33.333 0.00 0.00 0.00 1.90
569 622 9.866655 ATGAAGGGTGTTGATGTATAAATGTAT 57.133 29.630 0.00 0.00 0.00 2.29
570 623 9.119418 CATGAAGGGTGTTGATGTATAAATGTA 57.881 33.333 0.00 0.00 0.00 2.29
571 624 7.615365 ACATGAAGGGTGTTGATGTATAAATGT 59.385 33.333 0.00 0.00 0.00 2.71
573 626 9.342308 CTACATGAAGGGTGTTGATGTATAAAT 57.658 33.333 0.00 0.00 31.01 1.40
574 627 7.282224 GCTACATGAAGGGTGTTGATGTATAAA 59.718 37.037 0.00 0.00 31.01 1.40
576 629 6.099701 AGCTACATGAAGGGTGTTGATGTATA 59.900 38.462 0.00 0.00 31.01 1.47
577 630 5.104360 AGCTACATGAAGGGTGTTGATGTAT 60.104 40.000 0.00 0.00 31.01 2.29
579 632 3.009473 AGCTACATGAAGGGTGTTGATGT 59.991 43.478 0.00 0.00 0.00 3.06
580 633 3.614092 AGCTACATGAAGGGTGTTGATG 58.386 45.455 0.00 0.00 0.00 3.07
582 635 3.559171 GGAAGCTACATGAAGGGTGTTGA 60.559 47.826 0.00 0.00 0.00 3.18
583 636 2.749621 GGAAGCTACATGAAGGGTGTTG 59.250 50.000 0.00 0.00 0.00 3.33
584 637 2.644798 AGGAAGCTACATGAAGGGTGTT 59.355 45.455 0.00 0.00 0.00 3.32
585 638 2.237392 GAGGAAGCTACATGAAGGGTGT 59.763 50.000 0.00 0.00 0.00 4.16
587 640 2.503356 CTGAGGAAGCTACATGAAGGGT 59.497 50.000 0.00 0.00 0.00 4.34
589 642 2.503356 ACCTGAGGAAGCTACATGAAGG 59.497 50.000 4.99 0.00 0.00 3.46
590 643 3.450457 AGACCTGAGGAAGCTACATGAAG 59.550 47.826 4.99 0.00 0.00 3.02
591 644 3.445008 AGACCTGAGGAAGCTACATGAA 58.555 45.455 4.99 0.00 0.00 2.57
592 645 3.107402 AGACCTGAGGAAGCTACATGA 57.893 47.619 4.99 0.00 0.00 3.07
593 646 5.112686 GTTTAGACCTGAGGAAGCTACATG 58.887 45.833 4.99 0.00 0.00 3.21
594 647 4.142138 CGTTTAGACCTGAGGAAGCTACAT 60.142 45.833 4.99 0.00 0.00 2.29
595 648 3.192844 CGTTTAGACCTGAGGAAGCTACA 59.807 47.826 4.99 0.00 0.00 2.74
596 649 3.193056 ACGTTTAGACCTGAGGAAGCTAC 59.807 47.826 4.99 0.00 0.00 3.58
597 650 3.192844 CACGTTTAGACCTGAGGAAGCTA 59.807 47.826 4.99 0.68 0.00 3.32
598 651 2.028930 CACGTTTAGACCTGAGGAAGCT 60.029 50.000 4.99 1.75 0.00 3.74
599 652 2.029290 TCACGTTTAGACCTGAGGAAGC 60.029 50.000 4.99 0.00 0.00 3.86
601 654 4.884668 ATTCACGTTTAGACCTGAGGAA 57.115 40.909 4.99 0.00 0.00 3.36
602 655 4.282449 TCAATTCACGTTTAGACCTGAGGA 59.718 41.667 4.99 0.00 0.00 3.71
603 656 4.566004 TCAATTCACGTTTAGACCTGAGG 58.434 43.478 0.00 0.00 0.00 3.86
605 658 6.018262 CACTTTCAATTCACGTTTAGACCTGA 60.018 38.462 0.00 0.00 0.00 3.86
606 659 6.136071 CACTTTCAATTCACGTTTAGACCTG 58.864 40.000 0.00 0.00 0.00 4.00
607 660 5.238650 CCACTTTCAATTCACGTTTAGACCT 59.761 40.000 0.00 0.00 0.00 3.85
609 662 5.449304 CCCACTTTCAATTCACGTTTAGAC 58.551 41.667 0.00 0.00 0.00 2.59
610 663 4.023536 GCCCACTTTCAATTCACGTTTAGA 60.024 41.667 0.00 0.00 0.00 2.10
611 664 4.023193 AGCCCACTTTCAATTCACGTTTAG 60.023 41.667 0.00 0.00 0.00 1.85
612 665 3.886505 AGCCCACTTTCAATTCACGTTTA 59.113 39.130 0.00 0.00 0.00 2.01
613 666 2.693074 AGCCCACTTTCAATTCACGTTT 59.307 40.909 0.00 0.00 0.00 3.60
614 667 2.034558 CAGCCCACTTTCAATTCACGTT 59.965 45.455 0.00 0.00 0.00 3.99
616 669 1.666888 GCAGCCCACTTTCAATTCACG 60.667 52.381 0.00 0.00 0.00 4.35
617 670 1.340889 TGCAGCCCACTTTCAATTCAC 59.659 47.619 0.00 0.00 0.00 3.18
618 671 1.702182 TGCAGCCCACTTTCAATTCA 58.298 45.000 0.00 0.00 0.00 2.57
619 672 2.818130 TTGCAGCCCACTTTCAATTC 57.182 45.000 0.00 0.00 0.00 2.17
620 673 3.775261 AATTGCAGCCCACTTTCAATT 57.225 38.095 0.00 0.00 34.31 2.32
621 674 3.775261 AAATTGCAGCCCACTTTCAAT 57.225 38.095 0.00 0.00 31.39 2.57
623 676 3.640967 AGTTAAATTGCAGCCCACTTTCA 59.359 39.130 0.00 0.00 30.20 2.69
626 679 2.289010 GCAGTTAAATTGCAGCCCACTT 60.289 45.455 8.02 0.00 41.17 3.16
627 680 1.273327 GCAGTTAAATTGCAGCCCACT 59.727 47.619 8.02 0.00 41.17 4.00
628 681 1.713597 GCAGTTAAATTGCAGCCCAC 58.286 50.000 8.02 0.00 41.17 4.61
629 682 0.243365 CGCAGTTAAATTGCAGCCCA 59.757 50.000 12.19 0.00 41.59 5.36
631 684 1.078201 GGCGCAGTTAAATTGCAGCC 61.078 55.000 21.30 21.30 45.92 4.85
632 685 0.388391 TGGCGCAGTTAAATTGCAGC 60.388 50.000 10.83 13.88 41.59 5.25
633 686 1.621107 CTGGCGCAGTTAAATTGCAG 58.379 50.000 10.83 0.00 41.59 4.41
635 688 1.078201 GGCTGGCGCAGTTAAATTGC 61.078 55.000 10.83 3.69 38.10 3.56
637 690 0.958382 TCGGCTGGCGCAGTTAAATT 60.958 50.000 19.55 0.00 38.10 1.82
638 691 1.369091 CTCGGCTGGCGCAGTTAAAT 61.369 55.000 19.55 0.00 38.10 1.40
639 692 2.031314 TCGGCTGGCGCAGTTAAA 59.969 55.556 19.55 0.00 38.10 1.52
640 693 2.434185 CTCGGCTGGCGCAGTTAA 60.434 61.111 19.55 0.00 38.10 2.01
644 697 4.749310 AAGACTCGGCTGGCGCAG 62.749 66.667 19.55 17.91 38.10 5.18
647 700 2.048222 TTCAAGACTCGGCTGGCG 60.048 61.111 18.26 18.26 0.00 5.69
648 701 1.004440 AGTTCAAGACTCGGCTGGC 60.004 57.895 0.00 0.00 31.20 4.85
649 702 3.129792 GAGTTCAAGACTCGGCTGG 57.870 57.895 0.00 0.00 44.90 4.85
668 721 2.168728 GGTATCGAAGCCAAGAGGTCTT 59.831 50.000 0.00 0.00 37.19 3.01
669 722 1.757699 GGTATCGAAGCCAAGAGGTCT 59.242 52.381 0.00 0.00 37.19 3.85
670 723 1.480954 TGGTATCGAAGCCAAGAGGTC 59.519 52.381 8.61 0.00 37.19 3.85
671 724 1.568504 TGGTATCGAAGCCAAGAGGT 58.431 50.000 8.61 0.00 37.19 3.85
672 725 2.158900 ACATGGTATCGAAGCCAAGAGG 60.159 50.000 16.99 9.65 38.38 3.69
673 726 3.185246 ACATGGTATCGAAGCCAAGAG 57.815 47.619 16.99 11.73 38.38 2.85
674 727 4.746535 TTACATGGTATCGAAGCCAAGA 57.253 40.909 16.99 4.40 38.38 3.02
677 730 4.634004 CAGTTTTACATGGTATCGAAGCCA 59.366 41.667 12.72 12.72 39.33 4.75
680 733 5.560148 GTGCAGTTTTACATGGTATCGAAG 58.440 41.667 0.00 0.00 0.00 3.79
681 734 4.092237 CGTGCAGTTTTACATGGTATCGAA 59.908 41.667 0.00 0.00 0.00 3.71
683 736 3.784199 GCGTGCAGTTTTACATGGTATCG 60.784 47.826 0.00 0.00 0.00 2.92
684 737 3.126171 TGCGTGCAGTTTTACATGGTATC 59.874 43.478 0.00 0.00 0.00 2.24
685 738 3.078097 TGCGTGCAGTTTTACATGGTAT 58.922 40.909 0.00 0.00 0.00 2.73
687 740 1.001815 GTGCGTGCAGTTTTACATGGT 60.002 47.619 0.00 0.00 0.00 3.55
688 741 1.266718 AGTGCGTGCAGTTTTACATGG 59.733 47.619 0.00 0.00 0.00 3.66
691 744 1.529438 GCTAGTGCGTGCAGTTTTACA 59.471 47.619 7.59 0.00 0.00 2.41
692 745 1.136057 GGCTAGTGCGTGCAGTTTTAC 60.136 52.381 7.59 0.00 40.82 2.01
693 746 1.153353 GGCTAGTGCGTGCAGTTTTA 58.847 50.000 7.59 0.00 40.82 1.52
694 747 0.817634 TGGCTAGTGCGTGCAGTTTT 60.818 50.000 7.59 0.00 40.82 2.43
695 748 1.227823 TGGCTAGTGCGTGCAGTTT 60.228 52.632 7.59 0.00 40.82 2.66
698 751 1.630244 GAACTGGCTAGTGCGTGCAG 61.630 60.000 2.40 0.00 40.82 4.41
699 752 1.667830 GAACTGGCTAGTGCGTGCA 60.668 57.895 2.40 0.00 40.82 4.57
700 753 1.667830 TGAACTGGCTAGTGCGTGC 60.668 57.895 2.40 0.00 40.82 5.34
701 754 1.291877 GGTGAACTGGCTAGTGCGTG 61.292 60.000 2.40 0.00 40.82 5.34
702 755 1.004918 GGTGAACTGGCTAGTGCGT 60.005 57.895 2.40 0.00 40.82 5.24
703 756 1.741770 GGGTGAACTGGCTAGTGCG 60.742 63.158 2.40 0.00 40.82 5.34
705 758 0.396435 TGTGGGTGAACTGGCTAGTG 59.604 55.000 2.40 0.00 37.19 2.74
706 759 1.072331 CTTGTGGGTGAACTGGCTAGT 59.928 52.381 0.00 0.00 39.32 2.57
708 761 0.250727 GCTTGTGGGTGAACTGGCTA 60.251 55.000 0.00 0.00 0.00 3.93
710 763 1.109323 AAGCTTGTGGGTGAACTGGC 61.109 55.000 0.00 0.00 0.00 4.85
711 764 2.270352 TAAGCTTGTGGGTGAACTGG 57.730 50.000 9.86 0.00 0.00 4.00
712 765 2.030805 GCTTAAGCTTGTGGGTGAACTG 60.031 50.000 20.38 0.00 38.21 3.16
713 766 2.230660 GCTTAAGCTTGTGGGTGAACT 58.769 47.619 20.38 0.00 38.21 3.01
714 767 2.706555 GCTTAAGCTTGTGGGTGAAC 57.293 50.000 20.38 0.00 38.21 3.18
726 779 1.308783 GGCACCTCACCAGCTTAAGC 61.309 60.000 20.09 20.09 42.49 3.09
729 782 1.195115 CTAGGCACCTCACCAGCTTA 58.805 55.000 0.00 0.00 0.00 3.09
730 783 0.838122 ACTAGGCACCTCACCAGCTT 60.838 55.000 0.00 0.00 0.00 3.74
731 784 1.229336 ACTAGGCACCTCACCAGCT 60.229 57.895 0.00 0.00 0.00 4.24
734 787 0.409876 AGAGACTAGGCACCTCACCA 59.590 55.000 0.00 0.00 0.00 4.17
735 788 1.478916 GAAGAGACTAGGCACCTCACC 59.521 57.143 0.00 0.00 0.00 4.02
736 789 2.165437 CAGAAGAGACTAGGCACCTCAC 59.835 54.545 0.00 0.00 0.00 3.51
737 790 2.225142 ACAGAAGAGACTAGGCACCTCA 60.225 50.000 0.00 0.00 0.00 3.86
739 792 2.225142 TGACAGAAGAGACTAGGCACCT 60.225 50.000 0.00 0.00 0.00 4.00
740 793 2.165437 CTGACAGAAGAGACTAGGCACC 59.835 54.545 0.00 0.00 0.00 5.01
741 794 3.085533 TCTGACAGAAGAGACTAGGCAC 58.914 50.000 1.64 0.00 0.00 5.01
744 797 3.563808 CCGATCTGACAGAAGAGACTAGG 59.436 52.174 9.70 0.00 0.00 3.02
745 798 4.196193 ACCGATCTGACAGAAGAGACTAG 58.804 47.826 9.70 0.00 0.00 2.57
747 800 3.013921 GACCGATCTGACAGAAGAGACT 58.986 50.000 9.70 0.00 0.00 3.24
748 801 3.013921 AGACCGATCTGACAGAAGAGAC 58.986 50.000 9.70 1.76 32.29 3.36
750 803 4.448537 AAAGACCGATCTGACAGAAGAG 57.551 45.455 9.70 3.47 34.48 2.85
751 804 4.280929 TCAAAAGACCGATCTGACAGAAGA 59.719 41.667 9.70 0.00 34.48 2.87
754 807 4.808414 ATCAAAAGACCGATCTGACAGA 57.192 40.909 7.80 7.80 34.48 3.41
755 808 4.436584 GCAATCAAAAGACCGATCTGACAG 60.437 45.833 0.00 0.00 34.48 3.51
757 810 3.436704 TGCAATCAAAAGACCGATCTGAC 59.563 43.478 0.00 0.00 34.48 3.51
758 811 3.673902 TGCAATCAAAAGACCGATCTGA 58.326 40.909 0.00 0.00 34.48 3.27
760 813 5.220931 GCTAATGCAATCAAAAGACCGATCT 60.221 40.000 0.00 0.00 39.41 2.75
764 817 4.361451 AGCTAATGCAATCAAAAGACCG 57.639 40.909 0.00 0.00 42.74 4.79
767 820 5.882000 TGCTCTAGCTAATGCAATCAAAAGA 59.118 36.000 15.29 0.00 42.74 2.52
769 822 6.319405 TGATGCTCTAGCTAATGCAATCAAAA 59.681 34.615 19.70 0.84 42.74 2.44
770 823 5.824097 TGATGCTCTAGCTAATGCAATCAAA 59.176 36.000 19.70 5.98 42.74 2.69
772 825 4.964593 TGATGCTCTAGCTAATGCAATCA 58.035 39.130 19.70 18.59 42.74 2.57
773 826 5.875910 AGATGATGCTCTAGCTAATGCAATC 59.124 40.000 19.70 17.92 42.74 2.67
774 827 5.806818 AGATGATGCTCTAGCTAATGCAAT 58.193 37.500 19.70 12.21 42.74 3.56
775 828 5.224821 AGATGATGCTCTAGCTAATGCAA 57.775 39.130 19.70 8.72 42.74 4.08
776 829 4.886496 AGATGATGCTCTAGCTAATGCA 57.114 40.909 18.58 18.58 42.74 3.96
777 830 5.469421 ACAAAGATGATGCTCTAGCTAATGC 59.531 40.000 9.83 9.83 42.66 3.56
778 831 7.493743 AACAAAGATGATGCTCTAGCTAATG 57.506 36.000 3.26 0.00 42.66 1.90
780 833 7.928307 AAAACAAAGATGATGCTCTAGCTAA 57.072 32.000 3.26 0.00 42.66 3.09
783 836 7.701445 ACATAAAACAAAGATGATGCTCTAGC 58.299 34.615 0.00 0.00 42.50 3.42
784 837 9.499585 CAACATAAAACAAAGATGATGCTCTAG 57.500 33.333 0.00 0.00 0.00 2.43
785 838 7.970061 GCAACATAAAACAAAGATGATGCTCTA 59.030 33.333 8.54 0.00 42.69 2.43
786 839 6.810182 GCAACATAAAACAAAGATGATGCTCT 59.190 34.615 8.54 0.00 42.69 4.09
787 840 6.986118 GCAACATAAAACAAAGATGATGCTC 58.014 36.000 8.54 0.00 42.69 4.26
789 842 6.956299 AGCAACATAAAACAAAGATGATGC 57.044 33.333 7.91 7.91 44.91 3.91
790 843 8.218441 CACAAGCAACATAAAACAAAGATGATG 58.782 33.333 0.00 0.00 0.00 3.07
801 857 3.428746 ACGCACACAAGCAACATAAAA 57.571 38.095 0.00 0.00 0.00 1.52
805 861 0.871163 GCAACGCACACAAGCAACAT 60.871 50.000 0.00 0.00 0.00 2.71
816 872 0.865639 AGCAAAGAAACGCAACGCAC 60.866 50.000 0.00 0.00 0.00 5.34
829 885 6.683974 AGGCATACATTACTTGTAGCAAAG 57.316 37.500 0.00 0.00 43.87 2.77
832 888 6.183361 ACCATAGGCATACATTACTTGTAGCA 60.183 38.462 0.00 0.00 43.87 3.49
879 957 3.066900 CGTCTCGGAGGTGACATTTAGAT 59.933 47.826 4.96 0.00 32.82 1.98
896 974 0.452184 TCTTCGATGGAGTGCGTCTC 59.548 55.000 2.14 0.82 42.07 3.36
930 1011 4.227527 AGGGGACGGTATCTTCAGATTTTT 59.772 41.667 0.00 0.00 36.05 1.94
985 1066 1.739466 GATCATTGCTTTCAGCGACCA 59.261 47.619 0.00 0.00 46.26 4.02
1049 1132 2.674754 GCCGTGGATTTGAGGGGA 59.325 61.111 0.00 0.00 0.00 4.81
1070 1153 0.896940 TTCTCTCCCGGCAGTAACGT 60.897 55.000 0.00 0.00 0.00 3.99
1075 1158 1.004918 CGTTTTCTCTCCCGGCAGT 60.005 57.895 0.00 0.00 0.00 4.40
1140 1224 1.266175 CGTACCTCATCGTCCGCTAAT 59.734 52.381 0.00 0.00 0.00 1.73
1281 1461 2.210013 TGGCTCGAGGTTGCAGACT 61.210 57.895 15.58 0.00 0.00 3.24
1282 1462 2.029844 GTGGCTCGAGGTTGCAGAC 61.030 63.158 15.58 0.00 0.00 3.51
1283 1463 2.343758 GTGGCTCGAGGTTGCAGA 59.656 61.111 15.58 0.00 0.00 4.26
1284 1464 2.743928 GGTGGCTCGAGGTTGCAG 60.744 66.667 15.58 0.00 0.00 4.41
1285 1465 4.329545 GGGTGGCTCGAGGTTGCA 62.330 66.667 15.58 0.00 0.00 4.08
1286 1466 4.021925 AGGGTGGCTCGAGGTTGC 62.022 66.667 15.58 0.00 0.00 4.17
1287 1467 2.046892 CAGGGTGGCTCGAGGTTG 60.047 66.667 15.58 0.00 0.00 3.77
1288 1468 2.203788 TCAGGGTGGCTCGAGGTT 60.204 61.111 15.58 0.00 0.00 3.50
1322 1502 3.255379 GGAATCGTCGAGCGTGGC 61.255 66.667 0.00 0.00 42.13 5.01
1352 1532 2.012051 GCAGCAGTTACCGGTATTGCT 61.012 52.381 32.40 32.40 45.28 3.91
1368 1559 3.029074 CGCGATTACATGTTTTAGCAGC 58.971 45.455 2.30 0.54 0.00 5.25
1398 1589 5.394883 CCTGGCATAACAATTGAAAGCTCAT 60.395 40.000 13.59 0.00 0.00 2.90
1413 1604 4.504596 CGCCTGGGCCTGGCATAA 62.505 66.667 41.63 6.27 46.59 1.90
1569 1760 3.621715 GGCCTGGAATTAGTTCTACGTTG 59.378 47.826 0.00 0.00 34.68 4.10
1572 1763 3.118738 ACTGGCCTGGAATTAGTTCTACG 60.119 47.826 14.82 0.00 34.68 3.51
1593 1784 9.921637 TCAGACCAAAATAAATCCAACAATTAC 57.078 29.630 0.00 0.00 0.00 1.89
1643 1834 5.904362 ATTTTGTTAGCTGATTCAGGTCC 57.096 39.130 20.90 13.50 41.50 4.46
1770 1961 2.045708 GGCCGTCACATTGGATGCA 61.046 57.895 0.00 0.00 0.00 3.96
1872 2063 1.298157 TGCAGAGGCCGATCAAAACG 61.298 55.000 0.00 0.00 40.13 3.60
1897 2088 2.539953 GCAGAGGATCACTTACGACGAG 60.540 54.545 0.00 0.00 37.82 4.18
2580 2779 9.334693 CATTTAGTCTGCAACTCTGAATAAAAC 57.665 33.333 8.85 0.00 42.26 2.43
2586 2785 4.645535 AGCATTTAGTCTGCAACTCTGAA 58.354 39.130 5.04 0.00 42.15 3.02
3215 3440 3.062763 CGAATTGATCAGATTCCCGAGG 58.937 50.000 17.51 6.57 31.35 4.63
3278 3503 2.350134 GGAAACCACCCCGTCCTC 59.650 66.667 0.00 0.00 0.00 3.71
3359 3584 2.222931 GGCAACAAAAACGGCAAAGTTC 60.223 45.455 0.00 0.00 32.43 3.01
3371 3596 1.198713 TCTTGGCAAGGGCAACAAAA 58.801 45.000 25.92 1.30 42.98 2.44
3522 3747 1.303643 CTTCACCCTCCCCAGTTGC 60.304 63.158 0.00 0.00 0.00 4.17
3552 3777 4.824479 TCTCATCCACATTGCTGTCTAA 57.176 40.909 0.00 0.00 31.62 2.10
3735 4043 1.612676 ATCATGCCAATGGATCACCG 58.387 50.000 2.05 0.00 39.42 4.94
4008 4316 2.092968 AGAGACAACAGGCTTCACACAA 60.093 45.455 0.00 0.00 0.00 3.33
4050 4358 9.426534 CCCTATCATTTCTTTATTCTTTTCCCT 57.573 33.333 0.00 0.00 0.00 4.20
4079 4387 1.158007 ACCCCCTCACATTCCAAACT 58.842 50.000 0.00 0.00 0.00 2.66
4267 4578 2.440253 TGATACCCACTAAAATCCCCCG 59.560 50.000 0.00 0.00 0.00 5.73
4365 4676 9.953565 ACAATGATGAGATTCCATTCAAATTTT 57.046 25.926 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.