Multiple sequence alignment - TraesCS2B01G464800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G464800 chr2B 100.000 7262 0 0 1 7262 659064320 659071581 0.000000e+00 13411.0
1 TraesCS2B01G464800 chr2B 91.897 975 45 6 844 1810 334701116 334700168 0.000000e+00 1332.0
2 TraesCS2B01G464800 chr2B 95.066 831 31 4 3091 3921 334695464 334694644 0.000000e+00 1299.0
3 TraesCS2B01G464800 chr2B 88.806 1072 88 16 5326 6392 334690970 334689926 0.000000e+00 1286.0
4 TraesCS2B01G464800 chr2B 92.849 895 39 11 4213 5098 334693903 334693025 0.000000e+00 1275.0
5 TraesCS2B01G464800 chr2B 93.046 302 15 5 3917 4212 334694299 334693998 3.110000e-118 436.0
6 TraesCS2B01G464800 chr2B 85.819 409 31 15 2401 2809 334698925 334698544 6.780000e-110 409.0
7 TraesCS2B01G464800 chr2B 95.669 254 2 5 1802 2046 334699182 334698929 4.080000e-107 399.0
8 TraesCS2B01G464800 chr2B 90.690 290 24 2 6460 6749 334667762 334667476 4.110000e-102 383.0
9 TraesCS2B01G464800 chr2B 99.057 106 1 0 3004 3109 334698365 334698260 2.670000e-44 191.0
10 TraesCS2B01G464800 chr2B 96.226 106 4 0 5207 5312 334691060 334690955 2.690000e-39 174.0
11 TraesCS2B01G464800 chr2B 79.098 244 38 8 4394 4628 706297954 706298193 9.750000e-34 156.0
12 TraesCS2B01G464800 chr2B 95.349 86 1 1 2929 3014 159968442 159968524 4.570000e-27 134.0
13 TraesCS2B01G464800 chr2B 89.189 111 3 1 2045 2146 659066606 659066716 5.910000e-26 130.0
14 TraesCS2B01G464800 chr2B 92.308 91 5 1 5118 5208 334692934 334693022 2.130000e-25 128.0
15 TraesCS2B01G464800 chr2B 90.667 75 7 0 2743 2817 752479774 752479700 4.640000e-17 100.0
16 TraesCS2B01G464800 chr2D 95.241 4287 142 27 3004 7262 553333049 553337301 0.000000e+00 6730.0
17 TraesCS2B01G464800 chr2D 95.813 1863 35 12 202 2050 553330483 553332316 0.000000e+00 2968.0
18 TraesCS2B01G464800 chr2D 91.499 447 17 6 2487 2931 553332623 553333050 4.850000e-166 595.0
19 TraesCS2B01G464800 chr2D 89.439 303 26 3 2146 2443 553332326 553332627 1.910000e-100 377.0
20 TraesCS2B01G464800 chr2D 95.522 201 9 0 1 201 553330016 553330216 9.090000e-84 322.0
21 TraesCS2B01G464800 chr2D 91.509 106 7 2 7159 7262 553908860 553908755 2.110000e-30 145.0
22 TraesCS2B01G464800 chr5D 94.048 252 15 0 2146 2397 454842284 454842033 4.110000e-102 383.0
23 TraesCS2B01G464800 chr5D 92.490 253 19 0 2146 2398 7038587 7038335 5.350000e-96 363.0
24 TraesCS2B01G464800 chr5D 84.545 110 8 2 2048 2148 454842140 454842031 4.640000e-17 100.0
25 TraesCS2B01G464800 chr7D 93.254 252 17 0 2146 2397 45518468 45518719 8.900000e-99 372.0
26 TraesCS2B01G464800 chr7D 92.885 253 18 0 2146 2398 598726717 598726969 1.150000e-97 368.0
27 TraesCS2B01G464800 chr7D 80.122 327 41 16 238 547 234344760 234345079 9.480000e-54 222.0
28 TraesCS2B01G464800 chr7D 81.604 212 28 4 554 755 234345115 234345325 1.620000e-36 165.0
29 TraesCS2B01G464800 chr7D 92.771 83 4 1 2929 3009 566557485 566557403 1.280000e-22 119.0
30 TraesCS2B01G464800 chr7D 83.168 101 15 2 2414 2513 506720870 506720969 2.790000e-14 91.6
31 TraesCS2B01G464800 chr7D 100.000 28 0 0 2486 2513 611977701 611977728 1.300000e-02 52.8
32 TraesCS2B01G464800 chr3D 92.308 260 20 0 2146 2405 452015714 452015973 3.200000e-98 370.0
33 TraesCS2B01G464800 chr3D 79.817 327 42 16 238 547 456654134 456654453 4.410000e-52 217.0
34 TraesCS2B01G464800 chr3D 82.075 212 27 4 554 755 456654489 456654699 3.480000e-38 171.0
35 TraesCS2B01G464800 chr7B 93.200 250 17 0 2145 2394 557463284 557463035 1.150000e-97 368.0
36 TraesCS2B01G464800 chr7B 92.829 251 18 0 2146 2396 740313602 740313852 1.490000e-96 364.0
37 TraesCS2B01G464800 chr7B 88.350 103 11 1 7161 7262 98916510 98916408 9.890000e-24 122.0
38 TraesCS2B01G464800 chr7B 91.765 85 5 2 2921 3005 727632953 727633035 4.600000e-22 117.0
39 TraesCS2B01G464800 chr7B 86.607 112 6 2 2045 2147 743981926 743982037 1.660000e-21 115.0
40 TraesCS2B01G464800 chr4B 80.000 545 71 27 24 553 529298365 529297844 1.150000e-97 368.0
41 TraesCS2B01G464800 chr4A 92.829 251 16 2 2146 2395 610099625 610099376 5.350000e-96 363.0
42 TraesCS2B01G464800 chr4A 78.850 539 82 20 24 547 32462968 32462447 1.170000e-87 335.0
43 TraesCS2B01G464800 chr4A 81.707 82 13 2 2432 2512 42785012 42785092 4.700000e-07 67.6
44 TraesCS2B01G464800 chr4D 75.800 781 97 45 28 755 430794731 430793990 1.970000e-80 311.0
45 TraesCS2B01G464800 chr4D 88.776 98 10 1 7166 7262 408258281 408258184 1.280000e-22 119.0
46 TraesCS2B01G464800 chr4D 89.888 89 7 2 2927 3014 505555229 505555316 5.950000e-21 113.0
47 TraesCS2B01G464800 chr3A 92.857 98 6 1 7166 7262 95366896 95366799 2.730000e-29 141.0
48 TraesCS2B01G464800 chr3A 92.708 96 6 1 7165 7259 685767242 685767337 3.530000e-28 137.0
49 TraesCS2B01G464800 chr3A 87.879 99 4 7 2930 3023 723495422 723495517 7.700000e-20 110.0
50 TraesCS2B01G464800 chr3A 97.143 35 1 0 2486 2520 748363484 748363450 7.870000e-05 60.2
51 TraesCS2B01G464800 chr6D 91.262 103 8 1 7161 7262 109274312 109274210 9.820000e-29 139.0
52 TraesCS2B01G464800 chr6D 91.667 72 6 0 2075 2146 464705090 464705161 4.640000e-17 100.0
53 TraesCS2B01G464800 chr6D 96.970 33 1 0 2486 2518 275466681 275466649 1.000000e-03 56.5
54 TraesCS2B01G464800 chr6A 77.551 245 45 6 4397 4634 487116478 487116237 9.820000e-29 139.0
55 TraesCS2B01G464800 chr6A 83.333 108 14 4 2406 2511 435067318 435067423 6.000000e-16 97.1
56 TraesCS2B01G464800 chr7A 96.104 77 2 1 2930 3006 206709771 206709846 2.750000e-24 124.0
57 TraesCS2B01G464800 chr7A 88.350 103 9 3 7161 7262 10248272 10248372 3.560000e-23 121.0
58 TraesCS2B01G464800 chr1B 91.209 91 7 1 7166 7256 389226430 389226519 9.890000e-24 122.0
59 TraesCS2B01G464800 chr5B 88.298 94 9 2 2922 3014 354303285 354303377 2.140000e-20 111.0
60 TraesCS2B01G464800 chr2A 87.879 99 4 7 2930 3023 684468627 684468532 7.700000e-20 110.0
61 TraesCS2B01G464800 chr2A 87.879 99 4 7 2930 3023 767590279 767590184 7.700000e-20 110.0
62 TraesCS2B01G464800 chr2A 91.667 72 6 0 2075 2146 5783160 5783231 4.640000e-17 100.0
63 TraesCS2B01G464800 chr2A 100.000 29 0 0 4406 4434 749956455 749956427 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G464800 chr2B 659064320 659071581 7261 False 13411.000000 13411 100.000000 1 7262 1 chr2B.!!$F3 7261
1 TraesCS2B01G464800 chr2B 334689926 334701116 11190 True 755.666667 1332 93.159444 844 6392 9 chr2B.!!$R3 5548
2 TraesCS2B01G464800 chr2D 553330016 553337301 7285 False 2198.400000 6730 93.502800 1 7262 5 chr2D.!!$F1 7261
3 TraesCS2B01G464800 chr4B 529297844 529298365 521 True 368.000000 368 80.000000 24 553 1 chr4B.!!$R1 529
4 TraesCS2B01G464800 chr4A 32462447 32462968 521 True 335.000000 335 78.850000 24 547 1 chr4A.!!$R1 523
5 TraesCS2B01G464800 chr4D 430793990 430794731 741 True 311.000000 311 75.800000 28 755 1 chr4D.!!$R2 727

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
661 994 1.071605 GTGCTGAAAGAGTTCGCGAT 58.928 50.000 10.88 0.00 36.61 4.58 F
2110 3468 0.107508 ATCAATGGTGTCCAGCGGAG 60.108 55.000 0.00 0.00 36.75 4.63 F
2135 3493 0.392461 GCTGAGCCATGGTTCCGTAA 60.392 55.000 24.13 6.18 0.00 3.18 F
2937 4407 0.107459 CCCTTGCTTGCTACTCCCTC 60.107 60.000 0.00 0.00 0.00 4.30 F
2943 4413 0.175989 CTTGCTACTCCCTCCGTTCC 59.824 60.000 0.00 0.00 0.00 3.62 F
2944 4414 0.543410 TTGCTACTCCCTCCGTTCCA 60.543 55.000 0.00 0.00 0.00 3.53 F
4643 9385 0.032813 AGGGGCTATGCATGCTTTGT 60.033 50.000 20.33 5.03 0.00 2.83 F
4644 9386 0.826062 GGGGCTATGCATGCTTTGTT 59.174 50.000 20.33 1.25 0.00 2.83 F
5417 12016 1.532868 CCTTTTCCTGACTCGTGCAAG 59.467 52.381 0.00 0.00 0.00 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2344 3702 0.036388 ACCTACGCTGGACACCATTG 60.036 55.000 1.04 0.00 30.82 2.82 R
2924 4394 0.175989 GGAACGGAGGGAGTAGCAAG 59.824 60.000 0.00 0.00 0.00 4.01 R
4058 8698 0.178903 ACTACTCCCCTTGCCACAGA 60.179 55.000 0.00 0.00 0.00 3.41 R
4643 9385 0.378962 CGCAACCTTTTCACGGTGAA 59.621 50.000 19.07 19.07 34.33 3.18 R
4644 9386 2.018544 CGCAACCTTTTCACGGTGA 58.981 52.632 6.76 6.76 34.33 4.02 R
4718 9460 3.866651 AGTCTCATGAATGAAGAACCGG 58.133 45.455 0.00 0.00 36.18 5.28 R
5446 12045 1.794222 CGGTTGCGAAACATCCCTC 59.206 57.895 8.91 0.00 35.03 4.30 R
5966 12570 2.025131 TGATGATGGCTGTGGATGGAAA 60.025 45.455 0.00 0.00 0.00 3.13 R
7213 13866 0.035739 GCACCCGGACTTGAAACCTA 59.964 55.000 0.73 0.00 0.00 3.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
116 118 1.715862 CGCACTCAGCTCGCCTACTA 61.716 60.000 0.00 0.00 42.61 1.82
181 183 3.690280 TCGCAGCCGTGATCACCA 61.690 61.111 20.03 0.00 35.54 4.17
201 206 2.126228 CCGTACACACCGCGTCAT 60.126 61.111 4.92 0.00 0.00 3.06
202 207 2.156446 CCGTACACACCGCGTCATC 61.156 63.158 4.92 0.00 0.00 2.92
203 208 2.156446 CGTACACACCGCGTCATCC 61.156 63.158 4.92 0.00 0.00 3.51
205 210 2.628696 TACACACCGCGTCATCCGT 61.629 57.895 4.92 0.00 39.32 4.69
206 211 2.805999 TACACACCGCGTCATCCGTG 62.806 60.000 4.92 7.41 46.49 4.94
368 654 2.290367 TCGTTTGCATTGACACTTGAGG 59.710 45.455 0.00 0.00 0.00 3.86
374 660 2.731691 ATTGACACTTGAGGCGCCGT 62.732 55.000 23.20 12.02 0.00 5.68
385 671 2.277057 GCGCCGTACCGAAAATGC 60.277 61.111 0.00 0.00 0.00 3.56
432 718 3.443045 ACGTATTCCGGCGGACGT 61.443 61.111 30.66 30.66 43.27 4.34
463 754 3.309388 ACGAGGATTAATCTGCGATTCG 58.691 45.455 25.83 19.98 0.00 3.34
582 904 6.209589 TGCTAGCATCGTCTTTCCTATTCTAT 59.790 38.462 14.93 0.00 0.00 1.98
624 946 5.757850 AACGGAATCTTCTGCATTAATCC 57.242 39.130 0.00 0.00 37.06 3.01
661 994 1.071605 GTGCTGAAAGAGTTCGCGAT 58.928 50.000 10.88 0.00 36.61 4.58
667 1000 1.726791 GAAAGAGTTCGCGATGAAGCA 59.273 47.619 10.88 0.00 37.23 3.91
831 1167 1.340248 TCTCAGTTCGTGACACTTCCC 59.660 52.381 3.68 0.00 0.00 3.97
941 1294 4.301505 GTGACATCACGCCCACAT 57.698 55.556 0.00 0.00 37.10 3.21
1067 1420 4.133373 TAGCTCTACCCCGGCCGT 62.133 66.667 26.12 8.42 0.00 5.68
1298 1651 2.664851 CCCGCTCGCTCAACACAA 60.665 61.111 0.00 0.00 0.00 3.33
1343 1696 1.945354 GATCTGTCCGCCTCCAACGA 61.945 60.000 0.00 0.00 0.00 3.85
1454 1807 0.951040 CACCTCTGGAACCAAGTCGC 60.951 60.000 0.00 0.00 0.00 5.19
1737 2090 3.582208 CTCATCTCTATTCCCCTTCCCTG 59.418 52.174 0.00 0.00 0.00 4.45
2046 3404 6.652205 AGATAAATAGGTTCCACCCTTTGA 57.348 37.500 0.00 0.00 39.75 2.69
2050 3408 2.067365 AGGTTCCACCCTTTGACAAC 57.933 50.000 0.00 0.00 39.75 3.32
2051 3409 1.569072 AGGTTCCACCCTTTGACAACT 59.431 47.619 0.00 0.00 39.75 3.16
2052 3410 2.024369 AGGTTCCACCCTTTGACAACTT 60.024 45.455 0.00 0.00 39.75 2.66
2054 3412 3.020984 GTTCCACCCTTTGACAACTTCA 58.979 45.455 0.00 0.00 0.00 3.02
2055 3413 3.593442 TCCACCCTTTGACAACTTCAT 57.407 42.857 0.00 0.00 32.84 2.57
2056 3414 3.909732 TCCACCCTTTGACAACTTCATT 58.090 40.909 0.00 0.00 32.84 2.57
2057 3415 4.285863 TCCACCCTTTGACAACTTCATTT 58.714 39.130 0.00 0.00 32.84 2.32
2058 3416 4.714308 TCCACCCTTTGACAACTTCATTTT 59.286 37.500 0.00 0.00 32.84 1.82
2059 3417 5.188751 TCCACCCTTTGACAACTTCATTTTT 59.811 36.000 0.00 0.00 32.84 1.94
2084 3442 8.978874 TTAATCAACCATGCTATGAATAGTGT 57.021 30.769 0.00 0.00 32.96 3.55
2085 3443 7.502120 AATCAACCATGCTATGAATAGTGTC 57.498 36.000 0.00 0.00 32.96 3.67
2086 3444 6.239217 TCAACCATGCTATGAATAGTGTCT 57.761 37.500 0.00 0.00 32.96 3.41
2087 3445 7.360113 TCAACCATGCTATGAATAGTGTCTA 57.640 36.000 0.00 0.00 32.96 2.59
2088 3446 7.791029 TCAACCATGCTATGAATAGTGTCTAA 58.209 34.615 0.00 0.00 32.96 2.10
2089 3447 8.264347 TCAACCATGCTATGAATAGTGTCTAAA 58.736 33.333 0.00 0.00 32.96 1.85
2090 3448 8.892723 CAACCATGCTATGAATAGTGTCTAAAA 58.107 33.333 0.00 0.00 32.96 1.52
2091 3449 9.461312 AACCATGCTATGAATAGTGTCTAAAAA 57.539 29.630 0.00 0.00 32.96 1.94
2092 3450 9.632638 ACCATGCTATGAATAGTGTCTAAAAAT 57.367 29.630 0.00 0.00 32.96 1.82
2101 3459 9.295825 TGAATAGTGTCTAAAAATCAATGGTGT 57.704 29.630 0.00 0.00 0.00 4.16
2102 3460 9.774742 GAATAGTGTCTAAAAATCAATGGTGTC 57.225 33.333 0.00 0.00 0.00 3.67
2103 3461 6.575162 AGTGTCTAAAAATCAATGGTGTCC 57.425 37.500 0.00 0.00 0.00 4.02
2104 3462 6.068010 AGTGTCTAAAAATCAATGGTGTCCA 58.932 36.000 0.00 0.00 38.19 4.02
2105 3463 6.207417 AGTGTCTAAAAATCAATGGTGTCCAG 59.793 38.462 0.00 0.00 36.75 3.86
2106 3464 5.048083 TGTCTAAAAATCAATGGTGTCCAGC 60.048 40.000 0.00 0.00 36.75 4.85
2107 3465 3.302365 AAAAATCAATGGTGTCCAGCG 57.698 42.857 0.00 0.00 36.75 5.18
2108 3466 1.176527 AAATCAATGGTGTCCAGCGG 58.823 50.000 0.00 0.00 36.75 5.52
2109 3467 0.327924 AATCAATGGTGTCCAGCGGA 59.672 50.000 0.00 0.00 36.75 5.54
2110 3468 0.107508 ATCAATGGTGTCCAGCGGAG 60.108 55.000 0.00 0.00 36.75 4.63
2111 3469 1.746615 CAATGGTGTCCAGCGGAGG 60.747 63.158 0.00 0.00 36.75 4.30
2112 3470 2.224159 AATGGTGTCCAGCGGAGGT 61.224 57.895 0.00 0.00 36.75 3.85
2113 3471 1.779061 AATGGTGTCCAGCGGAGGTT 61.779 55.000 0.00 0.00 36.75 3.50
2114 3472 2.047179 GGTGTCCAGCGGAGGTTC 60.047 66.667 0.00 0.00 33.74 3.62
2115 3473 2.432628 GTGTCCAGCGGAGGTTCG 60.433 66.667 0.00 0.00 33.74 3.95
2116 3474 3.691342 TGTCCAGCGGAGGTTCGG 61.691 66.667 0.00 0.00 33.74 4.30
2123 3481 4.821589 CGGAGGTTCGGCTGAGCC 62.822 72.222 20.16 20.16 45.26 4.70
2133 3491 2.045926 GCTGAGCCATGGTTCCGT 60.046 61.111 24.13 0.00 0.00 4.69
2134 3492 1.220749 GCTGAGCCATGGTTCCGTA 59.779 57.895 24.13 6.54 0.00 4.02
2135 3493 0.392461 GCTGAGCCATGGTTCCGTAA 60.392 55.000 24.13 6.18 0.00 3.18
2136 3494 1.948611 GCTGAGCCATGGTTCCGTAAA 60.949 52.381 24.13 5.82 0.00 2.01
2137 3495 2.432444 CTGAGCCATGGTTCCGTAAAA 58.568 47.619 24.13 5.11 0.00 1.52
2138 3496 3.016736 CTGAGCCATGGTTCCGTAAAAT 58.983 45.455 24.13 0.00 0.00 1.82
2139 3497 4.196193 CTGAGCCATGGTTCCGTAAAATA 58.804 43.478 24.13 3.70 0.00 1.40
2140 3498 4.787551 TGAGCCATGGTTCCGTAAAATAT 58.212 39.130 24.13 0.00 0.00 1.28
2141 3499 5.197451 TGAGCCATGGTTCCGTAAAATATT 58.803 37.500 24.13 0.00 0.00 1.28
2142 3500 5.654650 TGAGCCATGGTTCCGTAAAATATTT 59.345 36.000 24.13 0.00 0.00 1.40
2143 3501 6.153680 TGAGCCATGGTTCCGTAAAATATTTT 59.846 34.615 24.13 17.18 0.00 1.82
2144 3502 6.569780 AGCCATGGTTCCGTAAAATATTTTC 58.430 36.000 16.56 8.16 0.00 2.29
2189 3547 1.070134 GCCGAACCTATGGTCTATGCA 59.930 52.381 0.00 0.00 33.12 3.96
2190 3548 2.868044 GCCGAACCTATGGTCTATGCAG 60.868 54.545 0.00 0.00 33.12 4.41
2191 3549 2.365617 CCGAACCTATGGTCTATGCAGT 59.634 50.000 0.00 0.00 33.12 4.40
2192 3550 3.572682 CCGAACCTATGGTCTATGCAGTA 59.427 47.826 0.00 0.00 33.12 2.74
2193 3551 4.547532 CGAACCTATGGTCTATGCAGTAC 58.452 47.826 0.00 0.00 33.12 2.73
2194 3552 4.547532 GAACCTATGGTCTATGCAGTACG 58.452 47.826 0.00 0.00 33.12 3.67
2224 3582 5.069648 ACATCCTACTACATGTGGATCTGTG 59.930 44.000 16.98 10.78 35.72 3.66
2226 3584 5.458595 TCCTACTACATGTGGATCTGTGAT 58.541 41.667 16.98 0.00 0.00 3.06
2230 3588 8.462811 CCTACTACATGTGGATCTGTGATATAC 58.537 40.741 16.98 0.00 0.00 1.47
2233 3591 8.309656 ACTACATGTGGATCTGTGATATACATG 58.690 37.037 16.98 21.58 45.55 3.21
2234 3592 5.936372 ACATGTGGATCTGTGATATACATGC 59.064 40.000 22.34 0.00 44.54 4.06
2240 3598 6.269769 TGGATCTGTGATATACATGCCAACTA 59.730 38.462 0.00 0.00 38.92 2.24
2241 3599 7.038088 TGGATCTGTGATATACATGCCAACTAT 60.038 37.037 0.00 0.00 38.92 2.12
2322 3680 7.716799 TTTTTAATCAACCATGCATAGGTCT 57.283 32.000 17.57 8.40 38.76 3.85
2339 3697 9.982651 GCATAGGTCTTTATGAATAGTGTCTAA 57.017 33.333 0.00 0.00 33.75 2.10
2357 3715 5.048083 TGTCTAAAAATCAATGGTGTCCAGC 60.048 40.000 0.00 0.00 36.75 4.85
2358 3716 3.302365 AAAAATCAATGGTGTCCAGCG 57.698 42.857 0.00 0.00 36.75 5.18
2368 3730 2.508663 GTCCAGCGTAGGTTCGGC 60.509 66.667 0.00 0.00 33.74 5.54
2395 3757 8.402326 GAACCATGGTTCCGTAAAATATTTTC 57.598 34.615 37.55 14.95 46.21 2.29
2418 3781 9.729281 TTTCGGTCAAAACCTAATTAATACTCT 57.271 29.630 0.00 0.00 44.04 3.24
2423 3786 9.886132 GTCAAAACCTAATTAATACTCTCTCCA 57.114 33.333 0.00 0.00 0.00 3.86
2442 3805 8.992349 TCTCTCCATCCTAAAATAAATGACTCA 58.008 33.333 0.00 0.00 0.00 3.41
2443 3806 9.618890 CTCTCCATCCTAAAATAAATGACTCAA 57.381 33.333 0.00 0.00 0.00 3.02
2444 3807 9.396022 TCTCCATCCTAAAATAAATGACTCAAC 57.604 33.333 0.00 0.00 0.00 3.18
2445 3808 9.177608 CTCCATCCTAAAATAAATGACTCAACA 57.822 33.333 0.00 0.00 0.00 3.33
2446 3809 9.699410 TCCATCCTAAAATAAATGACTCAACAT 57.301 29.630 0.00 0.00 0.00 2.71
2457 3820 7.986085 AAATGACTCAACATTGTACTAAGCT 57.014 32.000 0.00 0.00 39.88 3.74
2458 3821 7.986085 AATGACTCAACATTGTACTAAGCTT 57.014 32.000 3.48 3.48 38.76 3.74
2459 3822 9.502091 AAATGACTCAACATTGTACTAAGCTTA 57.498 29.630 5.94 5.94 39.88 3.09
2460 3823 9.502091 AATGACTCAACATTGTACTAAGCTTAA 57.498 29.630 7.74 0.00 38.76 1.85
2461 3824 9.672673 ATGACTCAACATTGTACTAAGCTTAAT 57.327 29.630 7.74 0.00 0.00 1.40
2464 3827 9.938280 ACTCAACATTGTACTAAGCTTAATACA 57.062 29.630 20.71 20.71 0.00 2.29
2504 3904 6.730447 TGAATCACTTATTTTGGGATGGAGA 58.270 36.000 0.00 0.00 0.00 3.71
2533 3933 1.694150 AGTAGAGTTGCAAGTGAGGCA 59.306 47.619 12.53 0.00 40.00 4.75
2603 4003 3.961480 AATTTGTTAGGCCTCCAAAGC 57.039 42.857 25.82 8.11 32.17 3.51
2627 4027 7.187244 CATAAATGCTCCAATCTGTCTAGTG 57.813 40.000 0.00 0.00 0.00 2.74
2629 4029 3.876274 TGCTCCAATCTGTCTAGTGTC 57.124 47.619 0.00 0.00 0.00 3.67
2630 4030 3.435275 TGCTCCAATCTGTCTAGTGTCT 58.565 45.455 0.00 0.00 0.00 3.41
2631 4031 4.600062 TGCTCCAATCTGTCTAGTGTCTA 58.400 43.478 0.00 0.00 0.00 2.59
2632 4032 4.642437 TGCTCCAATCTGTCTAGTGTCTAG 59.358 45.833 0.00 0.00 0.00 2.43
2633 4033 4.642885 GCTCCAATCTGTCTAGTGTCTAGT 59.357 45.833 4.13 0.00 0.00 2.57
2634 4034 5.823570 GCTCCAATCTGTCTAGTGTCTAGTA 59.176 44.000 4.13 0.00 0.00 1.82
2635 4035 6.488683 GCTCCAATCTGTCTAGTGTCTAGTAT 59.511 42.308 4.13 0.00 0.00 2.12
2636 4036 7.013846 GCTCCAATCTGTCTAGTGTCTAGTATT 59.986 40.741 4.13 0.00 0.00 1.89
2637 4037 9.562408 CTCCAATCTGTCTAGTGTCTAGTATTA 57.438 37.037 4.13 0.00 0.00 0.98
2641 4041 9.523168 AATCTGTCTAGTGTCTAGTATTATCCC 57.477 37.037 4.13 0.00 0.00 3.85
2642 4042 8.277720 TCTGTCTAGTGTCTAGTATTATCCCT 57.722 38.462 4.13 0.00 0.00 4.20
2643 4043 8.377034 TCTGTCTAGTGTCTAGTATTATCCCTC 58.623 40.741 4.13 0.00 0.00 4.30
2644 4044 8.042286 TGTCTAGTGTCTAGTATTATCCCTCA 57.958 38.462 4.13 0.00 0.00 3.86
2645 4045 7.937942 TGTCTAGTGTCTAGTATTATCCCTCAC 59.062 40.741 4.13 0.00 0.00 3.51
2848 4250 7.180408 ACAGAGTAAGTATTTCCTAGGCTTTGA 59.820 37.037 2.96 0.00 0.00 2.69
2921 4391 4.467769 CATATCAAAGCATTCAGGTCCCT 58.532 43.478 0.00 0.00 0.00 4.20
2923 4393 2.517959 TCAAAGCATTCAGGTCCCTTG 58.482 47.619 0.00 0.00 0.00 3.61
2924 4394 1.067354 CAAAGCATTCAGGTCCCTTGC 60.067 52.381 1.06 1.06 0.00 4.01
2925 4395 0.407139 AAGCATTCAGGTCCCTTGCT 59.593 50.000 5.38 5.38 45.06 3.91
2927 4397 0.529378 GCATTCAGGTCCCTTGCTTG 59.471 55.000 1.99 0.00 0.00 4.01
2928 4398 0.529378 CATTCAGGTCCCTTGCTTGC 59.471 55.000 0.00 0.00 0.00 4.01
2929 4399 0.407139 ATTCAGGTCCCTTGCTTGCT 59.593 50.000 0.00 0.00 0.00 3.91
2930 4400 1.064003 TTCAGGTCCCTTGCTTGCTA 58.936 50.000 0.00 0.00 0.00 3.49
2931 4401 0.324943 TCAGGTCCCTTGCTTGCTAC 59.675 55.000 0.00 0.00 0.00 3.58
2932 4402 0.326264 CAGGTCCCTTGCTTGCTACT 59.674 55.000 0.00 0.00 0.00 2.57
2933 4403 0.615850 AGGTCCCTTGCTTGCTACTC 59.384 55.000 0.00 0.00 0.00 2.59
2934 4404 0.393132 GGTCCCTTGCTTGCTACTCC 60.393 60.000 0.00 0.00 0.00 3.85
2935 4405 0.393132 GTCCCTTGCTTGCTACTCCC 60.393 60.000 0.00 0.00 0.00 4.30
2936 4406 0.547712 TCCCTTGCTTGCTACTCCCT 60.548 55.000 0.00 0.00 0.00 4.20
2937 4407 0.107459 CCCTTGCTTGCTACTCCCTC 60.107 60.000 0.00 0.00 0.00 4.30
2938 4408 0.107459 CCTTGCTTGCTACTCCCTCC 60.107 60.000 0.00 0.00 0.00 4.30
2939 4409 0.460987 CTTGCTTGCTACTCCCTCCG 60.461 60.000 0.00 0.00 0.00 4.63
2940 4410 1.192146 TTGCTTGCTACTCCCTCCGT 61.192 55.000 0.00 0.00 0.00 4.69
2941 4411 1.192146 TGCTTGCTACTCCCTCCGTT 61.192 55.000 0.00 0.00 0.00 4.44
2942 4412 0.460459 GCTTGCTACTCCCTCCGTTC 60.460 60.000 0.00 0.00 0.00 3.95
2943 4413 0.175989 CTTGCTACTCCCTCCGTTCC 59.824 60.000 0.00 0.00 0.00 3.62
2944 4414 0.543410 TTGCTACTCCCTCCGTTCCA 60.543 55.000 0.00 0.00 0.00 3.53
2945 4415 0.543410 TGCTACTCCCTCCGTTCCAA 60.543 55.000 0.00 0.00 0.00 3.53
2946 4416 0.611714 GCTACTCCCTCCGTTCCAAA 59.388 55.000 0.00 0.00 0.00 3.28
2947 4417 1.002773 GCTACTCCCTCCGTTCCAAAA 59.997 52.381 0.00 0.00 0.00 2.44
2948 4418 2.355818 GCTACTCCCTCCGTTCCAAAAT 60.356 50.000 0.00 0.00 0.00 1.82
2949 4419 3.118519 GCTACTCCCTCCGTTCCAAAATA 60.119 47.826 0.00 0.00 0.00 1.40
2950 4420 4.624604 GCTACTCCCTCCGTTCCAAAATAA 60.625 45.833 0.00 0.00 0.00 1.40
2951 4421 4.376225 ACTCCCTCCGTTCCAAAATAAA 57.624 40.909 0.00 0.00 0.00 1.40
2952 4422 4.930696 ACTCCCTCCGTTCCAAAATAAAT 58.069 39.130 0.00 0.00 0.00 1.40
2953 4423 4.705023 ACTCCCTCCGTTCCAAAATAAATG 59.295 41.667 0.00 0.00 0.00 2.32
2954 4424 4.924625 TCCCTCCGTTCCAAAATAAATGA 58.075 39.130 0.00 0.00 0.00 2.57
2955 4425 4.703093 TCCCTCCGTTCCAAAATAAATGAC 59.297 41.667 0.00 0.00 0.00 3.06
2956 4426 4.705023 CCCTCCGTTCCAAAATAAATGACT 59.295 41.667 0.00 0.00 0.00 3.41
2957 4427 5.163652 CCCTCCGTTCCAAAATAAATGACTC 60.164 44.000 0.00 0.00 0.00 3.36
2958 4428 5.414454 CCTCCGTTCCAAAATAAATGACTCA 59.586 40.000 0.00 0.00 0.00 3.41
2959 4429 6.072175 CCTCCGTTCCAAAATAAATGACTCAA 60.072 38.462 0.00 0.00 0.00 3.02
2960 4430 6.674066 TCCGTTCCAAAATAAATGACTCAAC 58.326 36.000 0.00 0.00 0.00 3.18
2961 4431 6.488683 TCCGTTCCAAAATAAATGACTCAACT 59.511 34.615 0.00 0.00 0.00 3.16
2962 4432 7.013846 TCCGTTCCAAAATAAATGACTCAACTT 59.986 33.333 0.00 0.00 0.00 2.66
2963 4433 7.651704 CCGTTCCAAAATAAATGACTCAACTTT 59.348 33.333 0.00 0.00 0.00 2.66
2964 4434 8.479280 CGTTCCAAAATAAATGACTCAACTTTG 58.521 33.333 0.00 0.00 0.00 2.77
2965 4435 9.313118 GTTCCAAAATAAATGACTCAACTTTGT 57.687 29.630 0.00 0.00 0.00 2.83
2967 4437 9.959749 TCCAAAATAAATGACTCAACTTTGTAC 57.040 29.630 0.00 0.00 0.00 2.90
2968 4438 9.965824 CCAAAATAAATGACTCAACTTTGTACT 57.034 29.630 0.00 0.00 0.00 2.73
2978 4448 9.692749 TGACTCAACTTTGTACTAACTATTGAG 57.307 33.333 20.31 20.31 44.65 3.02
2981 4451 9.692749 CTCAACTTTGTACTAACTATTGAGTCA 57.307 33.333 16.99 0.00 37.88 3.41
2995 4465 8.425577 ACTATTGAGTCATCTATTTTGGAACG 57.574 34.615 0.00 0.00 0.00 3.95
2996 4466 6.683974 ATTGAGTCATCTATTTTGGAACGG 57.316 37.500 0.00 0.00 0.00 4.44
2997 4467 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
2998 4468 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
2999 4469 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
3000 4470 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
3001 4471 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
3002 4472 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
3192 7477 1.865865 CAGAAGTACCGTTGTGCACT 58.134 50.000 19.41 0.00 0.00 4.40
3868 8153 4.309950 ATATCGTTCGGCCGGGGC 62.310 66.667 27.83 11.17 41.06 5.80
3957 8591 1.712977 GAGATGTCGTCGCCGGTACT 61.713 60.000 1.90 0.00 33.95 2.73
3958 8592 1.585521 GATGTCGTCGCCGGTACTG 60.586 63.158 1.90 0.00 33.95 2.74
3959 8593 2.262471 GATGTCGTCGCCGGTACTGT 62.262 60.000 1.90 0.00 33.95 3.55
3963 8602 0.673333 TCGTCGCCGGTACTGTAAGA 60.673 55.000 1.90 0.00 33.84 2.10
4105 8745 1.280421 CCACCAAGGGGAAGAAGAGAG 59.720 57.143 0.00 0.00 38.05 3.20
4643 9385 0.032813 AGGGGCTATGCATGCTTTGT 60.033 50.000 20.33 5.03 0.00 2.83
4644 9386 0.826062 GGGGCTATGCATGCTTTGTT 59.174 50.000 20.33 1.25 0.00 2.83
4664 9406 2.426752 CCGTGAAAAGGTTGCGCG 60.427 61.111 0.00 0.00 35.51 6.86
4718 9460 4.344359 TCCCCAAACCAATTTAAACTGC 57.656 40.909 0.00 0.00 0.00 4.40
4785 9527 2.883888 GCTTCCATTTAACAGGGCCAGA 60.884 50.000 6.18 0.00 0.00 3.86
5154 11553 7.074237 ACAATTAATATGAATGGGAGAGGGAGT 59.926 37.037 0.00 0.00 0.00 3.85
5157 11556 3.715648 ATGAATGGGAGAGGGAGTAGT 57.284 47.619 0.00 0.00 0.00 2.73
5225 11824 7.003402 TGATATGCCTTAATTAATTTGGGCC 57.997 36.000 26.74 17.88 36.25 5.80
5267 11866 8.848474 ATAGCATGTGTATCCCTTTACATAAC 57.152 34.615 0.00 0.00 34.76 1.89
5417 12016 1.532868 CCTTTTCCTGACTCGTGCAAG 59.467 52.381 0.00 0.00 0.00 4.01
5517 12116 2.896168 CCAAGCAGCCAATTATTGTGG 58.104 47.619 4.15 0.40 39.33 4.17
5537 12136 2.352229 CACGTGTTGCGCCACAAG 60.352 61.111 22.49 22.49 46.11 3.16
5769 12371 6.548622 CCATGTCTATCTGGGAATCAACATTT 59.451 38.462 0.00 0.00 0.00 2.32
5770 12372 7.255381 CCATGTCTATCTGGGAATCAACATTTC 60.255 40.741 0.00 0.00 0.00 2.17
5780 12382 7.563906 TGGGAATCAACATTTCTTTTGTTTCT 58.436 30.769 0.00 0.00 35.18 2.52
5974 12578 7.175104 TGATATAATAAGCCCACTTTCCATCC 58.825 38.462 0.00 0.00 37.33 3.51
5975 12579 3.756082 AATAAGCCCACTTTCCATCCA 57.244 42.857 0.00 0.00 37.33 3.41
6032 12636 7.671819 TGGAAATTTTATGGTTGATACACCTGA 59.328 33.333 0.00 0.00 37.75 3.86
6081 12685 6.445357 AACACTATGTTGTCGTTCCTTTTT 57.555 33.333 0.00 0.00 39.45 1.94
6242 12847 1.790635 TATTGGACCCCGCCCAACAA 61.791 55.000 0.00 0.00 45.40 2.83
6269 12874 7.219322 AGTTGTTTATACCGGTGACTTACTTT 58.781 34.615 19.93 0.00 0.00 2.66
6340 12981 4.207599 GTTGTTGTTGTTGTTGTTGTTGC 58.792 39.130 0.00 0.00 0.00 4.17
6351 12992 4.871513 TGTTGTTGTTGCTGTTGTTGTTA 58.128 34.783 0.00 0.00 0.00 2.41
6352 12993 5.473931 TGTTGTTGTTGCTGTTGTTGTTAT 58.526 33.333 0.00 0.00 0.00 1.89
6353 12994 5.928839 TGTTGTTGTTGCTGTTGTTGTTATT 59.071 32.000 0.00 0.00 0.00 1.40
6354 12995 7.090808 TGTTGTTGTTGCTGTTGTTGTTATTA 58.909 30.769 0.00 0.00 0.00 0.98
6355 12996 7.598869 TGTTGTTGTTGCTGTTGTTGTTATTAA 59.401 29.630 0.00 0.00 0.00 1.40
6356 12997 8.599774 GTTGTTGTTGCTGTTGTTGTTATTAAT 58.400 29.630 0.00 0.00 0.00 1.40
6357 12998 9.803315 TTGTTGTTGCTGTTGTTGTTATTAATA 57.197 25.926 0.00 0.00 0.00 0.98
6358 12999 9.973450 TGTTGTTGCTGTTGTTGTTATTAATAT 57.027 25.926 0.00 0.00 0.00 1.28
6396 13037 3.784701 TGTTGTTGTTGTTACCGCATT 57.215 38.095 0.00 0.00 0.00 3.56
6405 13046 2.210961 TGTTACCGCATTGTGAACGAA 58.789 42.857 0.00 0.00 0.00 3.85
6441 13082 5.796424 ATGGGCAATTCATGAGGTTAATC 57.204 39.130 0.00 0.00 0.00 1.75
6443 13084 4.646040 TGGGCAATTCATGAGGTTAATCTG 59.354 41.667 0.00 0.00 0.00 2.90
6471 13112 6.896021 TGTATCTCTGTAACTATAGCCACC 57.104 41.667 0.00 0.00 0.00 4.61
6477 13118 7.067421 TCTCTGTAACTATAGCCACCAGTTAT 58.933 38.462 0.00 0.00 37.18 1.89
6522 13163 3.016031 TGTTGATTGGATCCATGGTTCG 58.984 45.455 17.06 0.00 0.00 3.95
6545 13186 5.562248 CGTGTAATGTTGTCCATTGTTAACG 59.438 40.000 0.26 0.00 43.63 3.18
6550 13191 1.149987 TGTCCATTGTTAACGTCGGC 58.850 50.000 0.26 0.00 0.00 5.54
6554 13195 2.029200 TCCATTGTTAACGTCGGCACTA 60.029 45.455 0.26 0.00 0.00 2.74
6555 13196 2.933906 CCATTGTTAACGTCGGCACTAT 59.066 45.455 0.26 0.00 0.00 2.12
6580 13221 7.896811 TGTTGATTCTTTCTGCTCTAGAACTA 58.103 34.615 0.00 0.00 44.84 2.24
6586 13227 6.634805 TCTTTCTGCTCTAGAACTAATGTGG 58.365 40.000 0.00 0.00 44.84 4.17
6594 13235 6.542370 GCTCTAGAACTAATGTGGCCATTTTA 59.458 38.462 9.72 9.44 41.50 1.52
6673 13314 9.955208 TTATACAACGTCAATAATCTATCGTGT 57.045 29.630 0.00 0.00 0.00 4.49
6674 13315 6.569228 ACAACGTCAATAATCTATCGTGTG 57.431 37.500 0.00 0.00 0.00 3.82
6675 13316 6.327154 ACAACGTCAATAATCTATCGTGTGA 58.673 36.000 0.00 0.00 0.00 3.58
6676 13317 6.978659 ACAACGTCAATAATCTATCGTGTGAT 59.021 34.615 0.00 0.00 38.67 3.06
6677 13318 8.132995 ACAACGTCAATAATCTATCGTGTGATA 58.867 33.333 0.00 0.00 35.99 2.15
6678 13319 9.129209 CAACGTCAATAATCTATCGTGTGATAT 57.871 33.333 0.00 0.00 36.51 1.63
6679 13320 8.675040 ACGTCAATAATCTATCGTGTGATATG 57.325 34.615 0.00 0.00 36.51 1.78
6680 13321 8.297426 ACGTCAATAATCTATCGTGTGATATGT 58.703 33.333 0.00 0.00 36.51 2.29
6687 13328 5.049828 TCTATCGTGTGATATGTTGGCTTG 58.950 41.667 0.00 0.00 36.51 4.01
6701 13342 4.887071 TGTTGGCTTGACTTACAGATGTTT 59.113 37.500 0.00 0.00 0.00 2.83
6717 13358 6.335471 AGATGTTTCATTGCATCTGTTCAA 57.665 33.333 6.29 0.00 46.86 2.69
6726 13367 8.515695 TCATTGCATCTGTTCAAGAAATATCT 57.484 30.769 0.00 0.00 38.79 1.98
6750 13391 7.993183 TCTCAACTCCACAAAGTAAAGAGAAAT 59.007 33.333 0.00 0.00 33.04 2.17
6872 13513 7.948357 AGCAGTACATATGTATAAAAGTCGGA 58.052 34.615 18.27 0.00 32.54 4.55
6873 13514 8.418662 AGCAGTACATATGTATAAAAGTCGGAA 58.581 33.333 18.27 0.00 32.54 4.30
6993 13634 4.067913 CCATTTGCACACCGGCCC 62.068 66.667 0.00 0.00 0.00 5.80
7004 13656 0.820074 CACCGGCCCAGTTGTTGTTA 60.820 55.000 0.00 0.00 0.00 2.41
7011 13663 0.872388 CCAGTTGTTGTTACGGCCTC 59.128 55.000 0.00 0.00 0.00 4.70
7035 13687 2.034999 GTTGACGGGCCCCATTGA 59.965 61.111 18.66 0.00 0.00 2.57
7066 13718 2.369394 GCCAAGTTGCTATAGCCAGTT 58.631 47.619 21.84 16.58 41.18 3.16
7067 13719 2.098117 GCCAAGTTGCTATAGCCAGTTG 59.902 50.000 27.74 27.74 43.01 3.16
7124 13776 2.086599 TTGGTTGTGCCCATGCCCTA 62.087 55.000 0.00 0.00 36.33 3.53
7156 13808 3.880490 ACAGGTTGCATACTCAAAACGAA 59.120 39.130 0.00 0.00 0.00 3.85
7164 13816 2.399396 ACTCAAAACGAATTGTGCGG 57.601 45.000 0.00 0.00 0.00 5.69
7198 13850 4.141914 GGTTGGATAGTTAGGAGGACAGTG 60.142 50.000 0.00 0.00 0.00 3.66
7206 13858 0.716591 AGGAGGACAGTGGTATCCCA 59.283 55.000 0.00 0.00 38.87 4.37
7207 13859 1.123928 GGAGGACAGTGGTATCCCAG 58.876 60.000 0.00 0.00 42.94 4.45
7213 13866 3.741325 GTGGTATCCCAGCCCACT 58.259 61.111 0.00 0.00 44.21 4.00
7222 13875 0.404040 CCCAGCCCACTAGGTTTCAA 59.596 55.000 0.00 0.00 38.26 2.69
7227 13880 1.944430 GCCCACTAGGTTTCAAGTCCG 60.944 57.143 0.00 0.00 38.26 4.79
7232 13885 0.035739 TAGGTTTCAAGTCCGGGTGC 59.964 55.000 0.00 0.00 0.00 5.01
7247 13900 1.334869 GGGTGCTCGCATTTATTCTGG 59.665 52.381 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
233 504 0.249868 CTTGAGGTGCTTCACGTCCA 60.250 55.000 14.53 5.54 45.15 4.02
374 660 1.466950 CGCTGGAAAGCATTTTCGGTA 59.533 47.619 0.00 0.00 42.16 4.02
385 671 3.058914 CCTAACAAGTTGACGCTGGAAAG 60.059 47.826 10.54 0.00 0.00 2.62
432 718 2.255994 TAATCCTCGTCGCGTCGCAA 62.256 55.000 20.62 8.71 0.00 4.85
661 994 2.013400 TGAGCTTGACGTTTTGCTTCA 58.987 42.857 10.54 7.97 35.76 3.02
667 1000 1.941812 CGGCTGAGCTTGACGTTTT 59.058 52.632 3.72 0.00 0.00 2.43
694 1027 2.234296 ACCTCCTCCTTGGCCTTGG 61.234 63.158 3.32 6.25 35.26 3.61
831 1167 5.503498 GTTAGTCTACTACGAGTGAGCATG 58.497 45.833 0.00 0.00 0.00 4.06
940 1293 3.277120 AGGAGGGGATGAGATGGCTATAT 59.723 47.826 0.00 0.00 0.00 0.86
941 1294 2.662113 AGGAGGGGATGAGATGGCTATA 59.338 50.000 0.00 0.00 0.00 1.31
976 1329 4.988598 AGTTCGTGGGTGCCTGCG 62.989 66.667 0.00 0.00 0.00 5.18
1319 1672 1.006805 GAGGCGGACAGATCATCGG 60.007 63.158 0.00 0.00 0.00 4.18
1323 1676 1.596934 GTTGGAGGCGGACAGATCA 59.403 57.895 0.00 0.00 0.00 2.92
1326 1679 2.599281 TCGTTGGAGGCGGACAGA 60.599 61.111 0.00 0.00 0.00 3.41
1343 1696 0.326264 GAAGGAGGTCTGCATGGTGT 59.674 55.000 0.00 0.00 0.00 4.16
1454 1807 1.406069 GGTCCTGCTGTACTCACATGG 60.406 57.143 0.00 0.00 33.14 3.66
1705 2058 7.072961 AGGGGAATAGAGATGAGAATTAAGCAA 59.927 37.037 0.00 0.00 0.00 3.91
1737 2090 3.985925 GTGTGTGTAGTGTAGCTTGGTAC 59.014 47.826 0.00 3.33 0.00 3.34
2058 3416 9.407380 ACACTATTCATAGCATGGTTGATTAAA 57.593 29.630 1.12 0.00 33.68 1.52
2059 3417 8.978874 ACACTATTCATAGCATGGTTGATTAA 57.021 30.769 1.12 0.00 33.68 1.40
2060 3418 8.432013 AGACACTATTCATAGCATGGTTGATTA 58.568 33.333 1.12 7.02 33.68 1.75
2061 3419 7.285566 AGACACTATTCATAGCATGGTTGATT 58.714 34.615 1.12 6.28 33.68 2.57
2062 3420 6.835174 AGACACTATTCATAGCATGGTTGAT 58.165 36.000 1.12 0.00 33.68 2.57
2063 3421 6.239217 AGACACTATTCATAGCATGGTTGA 57.761 37.500 1.12 4.24 33.68 3.18
2064 3422 8.437360 TTTAGACACTATTCATAGCATGGTTG 57.563 34.615 1.12 1.70 33.68 3.77
2065 3423 9.461312 TTTTTAGACACTATTCATAGCATGGTT 57.539 29.630 1.12 0.00 33.68 3.67
2066 3424 9.632638 ATTTTTAGACACTATTCATAGCATGGT 57.367 29.630 1.62 1.62 33.68 3.55
2075 3433 9.295825 ACACCATTGATTTTTAGACACTATTCA 57.704 29.630 0.00 0.00 0.00 2.57
2076 3434 9.774742 GACACCATTGATTTTTAGACACTATTC 57.225 33.333 0.00 0.00 0.00 1.75
2077 3435 8.739972 GGACACCATTGATTTTTAGACACTATT 58.260 33.333 0.00 0.00 0.00 1.73
2078 3436 7.888021 TGGACACCATTGATTTTTAGACACTAT 59.112 33.333 0.00 0.00 0.00 2.12
2079 3437 7.227873 TGGACACCATTGATTTTTAGACACTA 58.772 34.615 0.00 0.00 0.00 2.74
2080 3438 6.068010 TGGACACCATTGATTTTTAGACACT 58.932 36.000 0.00 0.00 0.00 3.55
2081 3439 6.325919 TGGACACCATTGATTTTTAGACAC 57.674 37.500 0.00 0.00 0.00 3.67
2082 3440 5.048083 GCTGGACACCATTGATTTTTAGACA 60.048 40.000 0.00 0.00 30.82 3.41
2083 3441 5.402398 GCTGGACACCATTGATTTTTAGAC 58.598 41.667 0.00 0.00 30.82 2.59
2084 3442 4.155826 CGCTGGACACCATTGATTTTTAGA 59.844 41.667 0.00 0.00 30.82 2.10
2085 3443 4.414852 CGCTGGACACCATTGATTTTTAG 58.585 43.478 0.00 0.00 30.82 1.85
2086 3444 3.192422 CCGCTGGACACCATTGATTTTTA 59.808 43.478 0.00 0.00 30.82 1.52
2087 3445 2.029110 CCGCTGGACACCATTGATTTTT 60.029 45.455 0.00 0.00 30.82 1.94
2088 3446 1.545582 CCGCTGGACACCATTGATTTT 59.454 47.619 0.00 0.00 30.82 1.82
2089 3447 1.176527 CCGCTGGACACCATTGATTT 58.823 50.000 0.00 0.00 30.82 2.17
2090 3448 0.327924 TCCGCTGGACACCATTGATT 59.672 50.000 0.00 0.00 30.82 2.57
2091 3449 0.107508 CTCCGCTGGACACCATTGAT 60.108 55.000 0.00 0.00 30.82 2.57
2092 3450 1.296392 CTCCGCTGGACACCATTGA 59.704 57.895 0.00 0.00 30.82 2.57
2093 3451 1.746615 CCTCCGCTGGACACCATTG 60.747 63.158 0.00 0.00 30.82 2.82
2094 3452 1.779061 AACCTCCGCTGGACACCATT 61.779 55.000 0.00 0.00 30.82 3.16
2095 3453 2.185310 GAACCTCCGCTGGACACCAT 62.185 60.000 0.00 0.00 30.82 3.55
2096 3454 2.847234 AACCTCCGCTGGACACCA 60.847 61.111 0.00 0.00 0.00 4.17
2097 3455 2.047179 GAACCTCCGCTGGACACC 60.047 66.667 0.00 0.00 0.00 4.16
2098 3456 2.432628 CGAACCTCCGCTGGACAC 60.433 66.667 0.00 0.00 0.00 3.67
2099 3457 3.691342 CCGAACCTCCGCTGGACA 61.691 66.667 0.00 0.00 0.00 4.02
2103 3461 3.997064 CTCAGCCGAACCTCCGCTG 62.997 68.421 9.76 9.76 36.10 5.18
2104 3462 3.764466 CTCAGCCGAACCTCCGCT 61.764 66.667 0.00 0.00 0.00 5.52
2106 3464 4.821589 GGCTCAGCCGAACCTCCG 62.822 72.222 0.00 0.00 39.62 4.63
2116 3474 0.392461 TTACGGAACCATGGCTCAGC 60.392 55.000 16.83 0.00 0.00 4.26
2117 3475 2.107950 TTTACGGAACCATGGCTCAG 57.892 50.000 16.83 14.88 0.00 3.35
2118 3476 2.570415 TTTTACGGAACCATGGCTCA 57.430 45.000 16.83 0.00 0.00 4.26
2119 3477 5.767816 AATATTTTACGGAACCATGGCTC 57.232 39.130 13.04 9.56 0.00 4.70
2120 3478 6.538945 AAAATATTTTACGGAACCATGGCT 57.461 33.333 13.04 0.00 0.00 4.75
2121 3479 5.457473 CGAAAATATTTTACGGAACCATGGC 59.543 40.000 13.04 0.00 0.00 4.40
2122 3480 6.689669 GTCGAAAATATTTTACGGAACCATGG 59.310 38.462 21.59 11.19 0.00 3.66
2123 3481 6.409761 CGTCGAAAATATTTTACGGAACCATG 59.590 38.462 20.86 10.04 31.84 3.66
2124 3482 6.092533 ACGTCGAAAATATTTTACGGAACCAT 59.907 34.615 27.32 12.10 36.79 3.55
2125 3483 5.407995 ACGTCGAAAATATTTTACGGAACCA 59.592 36.000 27.32 11.26 36.79 3.67
2126 3484 5.729424 CACGTCGAAAATATTTTACGGAACC 59.271 40.000 27.32 10.62 36.79 3.62
2127 3485 6.524490 TCACGTCGAAAATATTTTACGGAAC 58.476 36.000 27.32 18.54 36.79 3.62
2128 3486 6.702972 TCACGTCGAAAATATTTTACGGAA 57.297 33.333 27.32 17.73 36.79 4.30
2129 3487 6.890663 ATCACGTCGAAAATATTTTACGGA 57.109 33.333 27.32 22.76 36.79 4.69
2130 3488 7.174746 TGAATCACGTCGAAAATATTTTACGG 58.825 34.615 27.32 19.95 36.79 4.02
2131 3489 7.369800 CCTGAATCACGTCGAAAATATTTTACG 59.630 37.037 24.44 24.44 37.83 3.18
2132 3490 8.385111 TCCTGAATCACGTCGAAAATATTTTAC 58.615 33.333 13.34 8.33 0.00 2.01
2133 3491 8.385111 GTCCTGAATCACGTCGAAAATATTTTA 58.615 33.333 13.34 0.00 0.00 1.52
2134 3492 7.241376 GTCCTGAATCACGTCGAAAATATTTT 58.759 34.615 13.24 13.24 0.00 1.82
2135 3493 6.183360 GGTCCTGAATCACGTCGAAAATATTT 60.183 38.462 0.00 0.00 0.00 1.40
2136 3494 5.293569 GGTCCTGAATCACGTCGAAAATATT 59.706 40.000 0.00 0.00 0.00 1.28
2137 3495 4.809426 GGTCCTGAATCACGTCGAAAATAT 59.191 41.667 0.00 0.00 0.00 1.28
2138 3496 4.178540 GGTCCTGAATCACGTCGAAAATA 58.821 43.478 0.00 0.00 0.00 1.40
2139 3497 3.000727 GGTCCTGAATCACGTCGAAAAT 58.999 45.455 0.00 0.00 0.00 1.82
2140 3498 2.224090 TGGTCCTGAATCACGTCGAAAA 60.224 45.455 0.00 0.00 0.00 2.29
2141 3499 1.341852 TGGTCCTGAATCACGTCGAAA 59.658 47.619 0.00 0.00 0.00 3.46
2142 3500 0.963225 TGGTCCTGAATCACGTCGAA 59.037 50.000 0.00 0.00 0.00 3.71
2143 3501 1.135112 CATGGTCCTGAATCACGTCGA 60.135 52.381 0.00 0.00 0.00 4.20
2144 3502 1.280982 CATGGTCCTGAATCACGTCG 58.719 55.000 0.00 0.00 0.00 5.12
2189 3547 8.910944 ACATGTAGTAGGATGTTAAATCGTACT 58.089 33.333 18.15 18.15 45.73 2.73
2190 3548 8.965172 CACATGTAGTAGGATGTTAAATCGTAC 58.035 37.037 0.00 7.04 38.78 3.67
2191 3549 8.139350 CCACATGTAGTAGGATGTTAAATCGTA 58.861 37.037 0.00 0.00 30.14 3.43
2192 3550 6.984474 CCACATGTAGTAGGATGTTAAATCGT 59.016 38.462 0.00 0.00 30.14 3.73
2193 3551 7.207383 TCCACATGTAGTAGGATGTTAAATCG 58.793 38.462 0.00 0.00 30.14 3.34
2194 3552 9.209175 GATCCACATGTAGTAGGATGTTAAATC 57.791 37.037 17.66 2.02 37.88 2.17
2260 3618 5.354513 GCATGTCTATTCATGAGGATCCATG 59.645 44.000 15.82 10.15 45.41 3.66
2339 3697 2.238521 ACGCTGGACACCATTGATTTT 58.761 42.857 0.00 0.00 30.82 1.82
2344 3702 0.036388 ACCTACGCTGGACACCATTG 60.036 55.000 1.04 0.00 30.82 2.82
2349 3707 1.445582 CCGAACCTACGCTGGACAC 60.446 63.158 1.04 0.00 0.00 3.67
2395 3757 8.943909 AGAGAGTATTAATTAGGTTTTGACCG 57.056 34.615 0.00 0.00 34.28 4.79
2418 3781 9.396022 GTTGAGTCATTTATTTTAGGATGGAGA 57.604 33.333 0.00 0.00 0.00 3.71
2475 3838 9.452287 CCATCCCAAAATAAGTGATTCAAATTT 57.548 29.630 0.00 0.00 0.00 1.82
2476 3839 8.824783 TCCATCCCAAAATAAGTGATTCAAATT 58.175 29.630 0.00 0.00 0.00 1.82
2477 3840 8.378115 TCCATCCCAAAATAAGTGATTCAAAT 57.622 30.769 0.00 0.00 0.00 2.32
2478 3841 7.673504 TCTCCATCCCAAAATAAGTGATTCAAA 59.326 33.333 0.00 0.00 0.00 2.69
2479 3842 7.181361 TCTCCATCCCAAAATAAGTGATTCAA 58.819 34.615 0.00 0.00 0.00 2.69
2480 3843 6.730447 TCTCCATCCCAAAATAAGTGATTCA 58.270 36.000 0.00 0.00 0.00 2.57
2481 3844 7.056635 TCTCTCCATCCCAAAATAAGTGATTC 58.943 38.462 0.00 0.00 0.00 2.52
2482 3845 6.973642 TCTCTCCATCCCAAAATAAGTGATT 58.026 36.000 0.00 0.00 0.00 2.57
2483 3846 6.159398 ACTCTCTCCATCCCAAAATAAGTGAT 59.841 38.462 0.00 0.00 0.00 3.06
2484 3847 5.488919 ACTCTCTCCATCCCAAAATAAGTGA 59.511 40.000 0.00 0.00 0.00 3.41
2485 3848 5.749462 ACTCTCTCCATCCCAAAATAAGTG 58.251 41.667 0.00 0.00 0.00 3.16
2486 3849 7.698163 ATACTCTCTCCATCCCAAAATAAGT 57.302 36.000 0.00 0.00 0.00 2.24
2489 3852 9.225682 ACTTAATACTCTCTCCATCCCAAAATA 57.774 33.333 0.00 0.00 0.00 1.40
2499 3899 6.890268 TGCAACTCTACTTAATACTCTCTCCA 59.110 38.462 0.00 0.00 0.00 3.86
2504 3904 8.123639 TCACTTGCAACTCTACTTAATACTCT 57.876 34.615 0.00 0.00 0.00 3.24
2533 3933 9.466497 ACTTATGTTGATTCCAATGTGATAGTT 57.534 29.630 0.00 0.00 34.39 2.24
2603 4003 6.765036 ACACTAGACAGATTGGAGCATTTATG 59.235 38.462 0.00 0.00 0.00 1.90
2627 4027 6.326843 ACAAAGGGTGAGGGATAATACTAGAC 59.673 42.308 0.00 0.00 0.00 2.59
2629 4029 6.749036 ACAAAGGGTGAGGGATAATACTAG 57.251 41.667 0.00 0.00 0.00 2.57
2630 4030 8.014263 TGATACAAAGGGTGAGGGATAATACTA 58.986 37.037 0.00 0.00 0.00 1.82
2631 4031 6.849697 TGATACAAAGGGTGAGGGATAATACT 59.150 38.462 0.00 0.00 0.00 2.12
2632 4032 7.074653 TGATACAAAGGGTGAGGGATAATAC 57.925 40.000 0.00 0.00 0.00 1.89
2633 4033 7.699709 TTGATACAAAGGGTGAGGGATAATA 57.300 36.000 0.00 0.00 0.00 0.98
2634 4034 6.590656 TTGATACAAAGGGTGAGGGATAAT 57.409 37.500 0.00 0.00 0.00 1.28
2635 4035 6.395780 TTTGATACAAAGGGTGAGGGATAA 57.604 37.500 0.00 0.00 0.00 1.75
2636 4036 6.395780 TTTTGATACAAAGGGTGAGGGATA 57.604 37.500 0.00 0.00 0.00 2.59
2637 4037 4.946160 TTTGATACAAAGGGTGAGGGAT 57.054 40.909 0.00 0.00 0.00 3.85
2638 4038 4.733077 TTTTGATACAAAGGGTGAGGGA 57.267 40.909 0.00 0.00 0.00 4.20
2639 4039 5.949354 TGTATTTTGATACAAAGGGTGAGGG 59.051 40.000 0.00 0.00 34.41 4.30
2640 4040 7.393234 TCTTGTATTTTGATACAAAGGGTGAGG 59.607 37.037 11.70 1.12 43.78 3.86
2641 4041 8.237267 GTCTTGTATTTTGATACAAAGGGTGAG 58.763 37.037 11.70 1.43 43.78 3.51
2642 4042 7.721842 TGTCTTGTATTTTGATACAAAGGGTGA 59.278 33.333 11.70 4.57 43.78 4.02
2643 4043 7.881142 TGTCTTGTATTTTGATACAAAGGGTG 58.119 34.615 11.70 2.75 43.78 4.61
2644 4044 8.650143 ATGTCTTGTATTTTGATACAAAGGGT 57.350 30.769 11.70 0.00 43.78 4.34
2645 4045 9.927668 AAATGTCTTGTATTTTGATACAAAGGG 57.072 29.630 11.70 3.30 43.78 3.95
2812 4214 9.364653 GGAAATACTTACTCTGTCCTATTCCTA 57.635 37.037 0.00 0.00 0.00 2.94
2813 4215 8.068733 AGGAAATACTTACTCTGTCCTATTCCT 58.931 37.037 0.00 0.00 32.24 3.36
2814 4216 8.252624 AGGAAATACTTACTCTGTCCTATTCC 57.747 38.462 0.00 0.00 32.24 3.01
2816 4218 9.369672 CCTAGGAAATACTTACTCTGTCCTATT 57.630 37.037 1.05 0.00 36.08 1.73
2824 4226 7.735326 TCAAAGCCTAGGAAATACTTACTCT 57.265 36.000 14.75 0.00 0.00 3.24
2848 4250 5.831997 ACAAGCGAATTTTAGTTGCTTCTT 58.168 33.333 0.00 0.00 43.51 2.52
2921 4391 1.192146 ACGGAGGGAGTAGCAAGCAA 61.192 55.000 0.00 0.00 0.00 3.91
2923 4393 0.460459 GAACGGAGGGAGTAGCAAGC 60.460 60.000 0.00 0.00 0.00 4.01
2924 4394 0.175989 GGAACGGAGGGAGTAGCAAG 59.824 60.000 0.00 0.00 0.00 4.01
2925 4395 0.543410 TGGAACGGAGGGAGTAGCAA 60.543 55.000 0.00 0.00 0.00 3.91
2927 4397 0.611714 TTTGGAACGGAGGGAGTAGC 59.388 55.000 0.00 0.00 0.00 3.58
2928 4398 3.629142 ATTTTGGAACGGAGGGAGTAG 57.371 47.619 0.00 0.00 0.00 2.57
2929 4399 5.502089 TTTATTTTGGAACGGAGGGAGTA 57.498 39.130 0.00 0.00 0.00 2.59
2930 4400 4.376225 TTTATTTTGGAACGGAGGGAGT 57.624 40.909 0.00 0.00 0.00 3.85
2931 4401 4.947388 TCATTTATTTTGGAACGGAGGGAG 59.053 41.667 0.00 0.00 0.00 4.30
2932 4402 4.703093 GTCATTTATTTTGGAACGGAGGGA 59.297 41.667 0.00 0.00 0.00 4.20
2933 4403 4.705023 AGTCATTTATTTTGGAACGGAGGG 59.295 41.667 0.00 0.00 0.00 4.30
2934 4404 5.414454 TGAGTCATTTATTTTGGAACGGAGG 59.586 40.000 0.00 0.00 0.00 4.30
2935 4405 6.494893 TGAGTCATTTATTTTGGAACGGAG 57.505 37.500 0.00 0.00 0.00 4.63
2936 4406 6.488683 AGTTGAGTCATTTATTTTGGAACGGA 59.511 34.615 0.00 0.00 0.00 4.69
2937 4407 6.677913 AGTTGAGTCATTTATTTTGGAACGG 58.322 36.000 0.00 0.00 0.00 4.44
2938 4408 8.479280 CAAAGTTGAGTCATTTATTTTGGAACG 58.521 33.333 0.00 0.00 0.00 3.95
2939 4409 9.313118 ACAAAGTTGAGTCATTTATTTTGGAAC 57.687 29.630 12.94 0.00 0.00 3.62
2941 4411 9.959749 GTACAAAGTTGAGTCATTTATTTTGGA 57.040 29.630 12.94 4.81 0.00 3.53
2942 4412 9.965824 AGTACAAAGTTGAGTCATTTATTTTGG 57.034 29.630 12.94 0.78 0.00 3.28
2952 4422 9.692749 CTCAATAGTTAGTACAAAGTTGAGTCA 57.307 33.333 13.17 0.00 37.56 3.41
2953 4423 9.694137 ACTCAATAGTTAGTACAAAGTTGAGTC 57.306 33.333 17.77 0.00 46.70 3.36
2955 4425 9.692749 TGACTCAATAGTTAGTACAAAGTTGAG 57.307 33.333 16.92 16.92 44.06 3.02
2969 4439 8.883731 CGTTCCAAAATAGATGACTCAATAGTT 58.116 33.333 0.00 0.00 35.56 2.24
2970 4440 7.495934 CCGTTCCAAAATAGATGACTCAATAGT 59.504 37.037 0.00 0.00 39.21 2.12
2971 4441 7.710907 TCCGTTCCAAAATAGATGACTCAATAG 59.289 37.037 0.00 0.00 0.00 1.73
2972 4442 7.561251 TCCGTTCCAAAATAGATGACTCAATA 58.439 34.615 0.00 0.00 0.00 1.90
2973 4443 6.414732 TCCGTTCCAAAATAGATGACTCAAT 58.585 36.000 0.00 0.00 0.00 2.57
2974 4444 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
2975 4445 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
2976 4446 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
2977 4447 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
2978 4448 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
2979 4449 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
2980 4450 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
2981 4451 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
2982 4452 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
2983 4453 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2984 4454 3.118519 GCTACTCCCTCCGTTCCAAAATA 60.119 47.826 0.00 0.00 0.00 1.40
2985 4455 2.355818 GCTACTCCCTCCGTTCCAAAAT 60.356 50.000 0.00 0.00 0.00 1.82
2986 4456 1.002773 GCTACTCCCTCCGTTCCAAAA 59.997 52.381 0.00 0.00 0.00 2.44
2987 4457 0.611714 GCTACTCCCTCCGTTCCAAA 59.388 55.000 0.00 0.00 0.00 3.28
2988 4458 0.252103 AGCTACTCCCTCCGTTCCAA 60.252 55.000 0.00 0.00 0.00 3.53
2989 4459 0.627451 TAGCTACTCCCTCCGTTCCA 59.373 55.000 0.00 0.00 0.00 3.53
2990 4460 1.320507 CTAGCTACTCCCTCCGTTCC 58.679 60.000 0.00 0.00 0.00 3.62
2991 4461 0.669619 GCTAGCTACTCCCTCCGTTC 59.330 60.000 7.70 0.00 0.00 3.95
2992 4462 0.259356 AGCTAGCTACTCCCTCCGTT 59.741 55.000 17.69 0.00 0.00 4.44
2993 4463 1.072648 CTAGCTAGCTACTCCCTCCGT 59.927 57.143 20.67 0.00 0.00 4.69
2994 4464 1.348366 TCTAGCTAGCTACTCCCTCCG 59.652 57.143 20.67 8.54 0.00 4.63
2995 4465 3.512219 TTCTAGCTAGCTACTCCCTCC 57.488 52.381 20.67 0.00 0.00 4.30
2996 4466 4.891168 ACTTTTCTAGCTAGCTACTCCCTC 59.109 45.833 20.67 0.00 0.00 4.30
2997 4467 4.874199 ACTTTTCTAGCTAGCTACTCCCT 58.126 43.478 20.67 0.00 0.00 4.20
2998 4468 5.829391 AGTACTTTTCTAGCTAGCTACTCCC 59.171 44.000 20.67 3.86 0.00 4.30
2999 4469 6.947644 AGTACTTTTCTAGCTAGCTACTCC 57.052 41.667 20.67 3.39 0.00 3.85
3000 4470 8.667076 AGTAGTACTTTTCTAGCTAGCTACTC 57.333 38.462 20.67 9.89 33.59 2.59
3001 4471 9.112725 GAAGTAGTACTTTTCTAGCTAGCTACT 57.887 37.037 20.67 20.40 38.80 2.57
3002 4472 8.891720 TGAAGTAGTACTTTTCTAGCTAGCTAC 58.108 37.037 20.67 17.22 38.80 3.58
3263 7548 2.753043 CACCACCTGCATGCTCCC 60.753 66.667 20.33 0.00 0.00 4.30
3721 8006 0.749454 CTTGCATGGAGCTGTACCCC 60.749 60.000 0.00 0.00 45.94 4.95
3868 8153 0.901580 AAGGCACAGGCTTTCCCATG 60.902 55.000 0.00 0.00 46.16 3.66
3915 8549 1.271379 GCCCTTGCTTCTTGTACTCCA 60.271 52.381 0.00 0.00 33.53 3.86
3957 8591 5.840715 TCTTGCATGCATGTTTTTCTTACA 58.159 33.333 26.79 10.74 0.00 2.41
3958 8592 6.587226 TGATCTTGCATGCATGTTTTTCTTAC 59.413 34.615 26.79 8.24 0.00 2.34
3959 8593 6.689554 TGATCTTGCATGCATGTTTTTCTTA 58.310 32.000 26.79 10.67 0.00 2.10
3963 8602 4.693566 CCTTGATCTTGCATGCATGTTTTT 59.306 37.500 26.79 14.28 0.00 1.94
4058 8698 0.178903 ACTACTCCCCTTGCCACAGA 60.179 55.000 0.00 0.00 0.00 3.41
4105 8745 1.458588 ATCCCCTCTCCTCTTCCGC 60.459 63.158 0.00 0.00 0.00 5.54
4260 8994 5.571784 AATACTGGTTGAACTCATGCATG 57.428 39.130 21.07 21.07 0.00 4.06
4261 8995 7.066284 GTCTAAATACTGGTTGAACTCATGCAT 59.934 37.037 0.00 0.00 0.00 3.96
4262 8996 6.371548 GTCTAAATACTGGTTGAACTCATGCA 59.628 38.462 0.00 0.00 0.00 3.96
4263 8997 6.595716 AGTCTAAATACTGGTTGAACTCATGC 59.404 38.462 0.00 0.00 0.00 4.06
4264 8998 7.413438 GCAGTCTAAATACTGGTTGAACTCATG 60.413 40.741 6.17 0.00 45.75 3.07
4265 8999 6.595716 GCAGTCTAAATACTGGTTGAACTCAT 59.404 38.462 6.17 0.00 45.75 2.90
4266 9000 5.932303 GCAGTCTAAATACTGGTTGAACTCA 59.068 40.000 6.17 0.00 45.75 3.41
4267 9001 6.410243 GCAGTCTAAATACTGGTTGAACTC 57.590 41.667 6.17 0.00 45.75 3.01
4440 9181 8.073467 AGTTGGTAAAATTTCTGGTCTTGAAA 57.927 30.769 0.00 0.00 37.74 2.69
4643 9385 0.378962 CGCAACCTTTTCACGGTGAA 59.621 50.000 19.07 19.07 34.33 3.18
4644 9386 2.018544 CGCAACCTTTTCACGGTGA 58.981 52.632 6.76 6.76 34.33 4.02
4662 9404 4.061570 ACATTGTTTCGTTAAGCTACGC 57.938 40.909 4.11 0.00 41.16 4.42
4718 9460 3.866651 AGTCTCATGAATGAAGAACCGG 58.133 45.455 0.00 0.00 36.18 5.28
4785 9527 6.775708 TGTGTCCTAACTTTACTTTAGGCAT 58.224 36.000 3.64 0.00 43.77 4.40
5189 11588 5.946942 AAGGCATATCAAGTTCAGAGAGA 57.053 39.130 0.00 0.00 0.00 3.10
5446 12045 1.794222 CGGTTGCGAAACATCCCTC 59.206 57.895 8.91 0.00 35.03 4.30
5517 12116 4.307908 GTGGCGCAACACGTGTCC 62.308 66.667 23.61 18.85 46.11 4.02
5681 12280 5.476945 CCAAACTACAAAAGGAGGTAGCAAT 59.523 40.000 0.00 0.00 40.45 3.56
5748 12347 7.872113 AAGAAATGTTGATTCCCAGATAGAC 57.128 36.000 0.00 0.00 0.00 2.59
5780 12382 7.493320 ACAGACAACGAAATAGTAAGTCAAACA 59.507 33.333 0.00 0.00 34.08 2.83
5966 12570 2.025131 TGATGATGGCTGTGGATGGAAA 60.025 45.455 0.00 0.00 0.00 3.13
5974 12578 4.216902 TGAAGAAGTTTGATGATGGCTGTG 59.783 41.667 0.00 0.00 0.00 3.66
5975 12579 4.401022 TGAAGAAGTTTGATGATGGCTGT 58.599 39.130 0.00 0.00 0.00 4.40
6006 12610 7.671819 TCAGGTGTATCAACCATAAAATTTCCA 59.328 33.333 0.00 0.00 43.20 3.53
6017 12621 5.221742 TGTTATGTGTCAGGTGTATCAACCA 60.222 40.000 0.00 0.00 43.20 3.67
6081 12685 5.656416 CCATGGCTTGTAATCCTAAGGAAAA 59.344 40.000 0.00 0.00 34.34 2.29
6196 12801 2.494059 GCCGTTGCTATCCATGTACAT 58.506 47.619 1.41 1.41 33.53 2.29
6242 12847 5.479124 AAGTCACCGGTATAAACAACTCT 57.521 39.130 6.87 0.00 0.00 3.24
6367 13008 9.557338 GCGGTAACAACAACAACAATAATAATA 57.443 29.630 0.00 0.00 0.00 0.98
6368 13009 8.082852 TGCGGTAACAACAACAACAATAATAAT 58.917 29.630 0.00 0.00 0.00 1.28
6369 13010 7.423199 TGCGGTAACAACAACAACAATAATAA 58.577 30.769 0.00 0.00 0.00 1.40
6370 13011 6.967135 TGCGGTAACAACAACAACAATAATA 58.033 32.000 0.00 0.00 0.00 0.98
6371 13012 5.833082 TGCGGTAACAACAACAACAATAAT 58.167 33.333 0.00 0.00 0.00 1.28
6372 13013 5.244785 TGCGGTAACAACAACAACAATAA 57.755 34.783 0.00 0.00 0.00 1.40
6373 13014 4.895224 TGCGGTAACAACAACAACAATA 57.105 36.364 0.00 0.00 0.00 1.90
6374 13015 3.784701 TGCGGTAACAACAACAACAAT 57.215 38.095 0.00 0.00 0.00 2.71
6375 13016 3.784701 ATGCGGTAACAACAACAACAA 57.215 38.095 0.00 0.00 0.00 2.83
6376 13017 3.119459 ACAATGCGGTAACAACAACAACA 60.119 39.130 0.00 0.00 0.00 3.33
6422 13063 4.889409 TCCAGATTAACCTCATGAATTGCC 59.111 41.667 0.00 0.00 0.00 4.52
6441 13082 8.293867 GCTATAGTTACAGAGATACAACTCCAG 58.706 40.741 0.84 0.00 37.60 3.86
6443 13084 7.230913 TGGCTATAGTTACAGAGATACAACTCC 59.769 40.741 0.84 0.00 37.60 3.85
6545 13186 4.631813 AGAAAGAATCAACATAGTGCCGAC 59.368 41.667 0.00 0.00 0.00 4.79
6550 13191 6.981762 AGAGCAGAAAGAATCAACATAGTG 57.018 37.500 0.00 0.00 0.00 2.74
6554 13195 7.393216 AGTTCTAGAGCAGAAAGAATCAACAT 58.607 34.615 9.43 0.00 44.89 2.71
6555 13196 6.763355 AGTTCTAGAGCAGAAAGAATCAACA 58.237 36.000 9.43 0.00 44.89 3.33
6658 13299 8.171196 GCCAACATATCACACGATAGATTATTG 58.829 37.037 0.00 0.00 37.53 1.90
6659 13300 8.097038 AGCCAACATATCACACGATAGATTATT 58.903 33.333 0.00 0.00 37.53 1.40
6660 13301 7.615403 AGCCAACATATCACACGATAGATTAT 58.385 34.615 0.00 0.00 37.53 1.28
6662 13303 5.858381 AGCCAACATATCACACGATAGATT 58.142 37.500 0.00 0.00 37.53 2.40
6666 13307 4.808895 GTCAAGCCAACATATCACACGATA 59.191 41.667 0.00 0.00 38.48 2.92
6667 13308 3.623060 GTCAAGCCAACATATCACACGAT 59.377 43.478 0.00 0.00 35.50 3.73
6668 13309 3.000041 GTCAAGCCAACATATCACACGA 59.000 45.455 0.00 0.00 0.00 4.35
6669 13310 3.002791 AGTCAAGCCAACATATCACACG 58.997 45.455 0.00 0.00 0.00 4.49
6670 13311 5.411361 TGTAAGTCAAGCCAACATATCACAC 59.589 40.000 0.00 0.00 0.00 3.82
6671 13312 5.555966 TGTAAGTCAAGCCAACATATCACA 58.444 37.500 0.00 0.00 0.00 3.58
6672 13313 5.874810 TCTGTAAGTCAAGCCAACATATCAC 59.125 40.000 0.00 0.00 33.76 3.06
6673 13314 6.048732 TCTGTAAGTCAAGCCAACATATCA 57.951 37.500 0.00 0.00 33.76 2.15
6674 13315 6.540189 ACATCTGTAAGTCAAGCCAACATATC 59.460 38.462 0.00 0.00 33.76 1.63
6675 13316 6.418101 ACATCTGTAAGTCAAGCCAACATAT 58.582 36.000 0.00 0.00 33.76 1.78
6676 13317 5.804639 ACATCTGTAAGTCAAGCCAACATA 58.195 37.500 0.00 0.00 33.76 2.29
6677 13318 4.655963 ACATCTGTAAGTCAAGCCAACAT 58.344 39.130 0.00 0.00 33.76 2.71
6678 13319 4.085357 ACATCTGTAAGTCAAGCCAACA 57.915 40.909 0.00 0.00 33.76 3.33
6679 13320 5.008613 TGAAACATCTGTAAGTCAAGCCAAC 59.991 40.000 0.00 0.00 33.76 3.77
6680 13321 5.129634 TGAAACATCTGTAAGTCAAGCCAA 58.870 37.500 0.00 0.00 33.76 4.52
6701 13342 8.515695 AGATATTTCTTGAACAGATGCAATGA 57.484 30.769 9.10 0.00 0.00 2.57
6717 13358 9.793259 TTTACTTTGTGGAGTTGAGATATTTCT 57.207 29.630 0.00 0.00 33.88 2.52
6726 13367 9.621629 TTATTTCTCTTTACTTTGTGGAGTTGA 57.378 29.630 0.00 0.00 0.00 3.18
6750 13391 9.209175 GCTCTCTGAATTCTAAGTGAACTTTTA 57.791 33.333 7.05 0.00 37.52 1.52
6760 13401 4.097135 TGTCTCGGCTCTCTGAATTCTAAG 59.903 45.833 7.05 4.32 0.00 2.18
6771 13412 2.230266 ACTTTCTTCTGTCTCGGCTCTC 59.770 50.000 0.00 0.00 0.00 3.20
6773 13414 2.734079 CAACTTTCTTCTGTCTCGGCTC 59.266 50.000 0.00 0.00 0.00 4.70
6952 13593 3.186613 GCCCAAGAAGAAGAACAAGTACG 59.813 47.826 0.00 0.00 0.00 3.67
6993 13634 0.511221 CGAGGCCGTAACAACAACTG 59.489 55.000 0.00 0.00 0.00 3.16
7035 13687 1.101049 CAACTTGGCGAGGTTGTGGT 61.101 55.000 14.37 0.00 38.27 4.16
7124 13776 0.548989 TGCAACCTGTGTTACCCACT 59.451 50.000 0.00 0.00 44.81 4.00
7134 13786 3.472652 TCGTTTTGAGTATGCAACCTGT 58.527 40.909 0.00 0.00 0.00 4.00
7136 13788 5.009610 ACAATTCGTTTTGAGTATGCAACCT 59.990 36.000 0.00 0.00 0.00 3.50
7138 13790 5.387342 GCACAATTCGTTTTGAGTATGCAAC 60.387 40.000 0.00 0.00 32.20 4.17
7139 13791 4.679197 GCACAATTCGTTTTGAGTATGCAA 59.321 37.500 0.00 0.00 32.20 4.08
7156 13808 1.150536 ACAGGTTGGTCCGCACAAT 59.849 52.632 0.00 0.00 41.99 2.71
7206 13858 1.351350 GGACTTGAAACCTAGTGGGCT 59.649 52.381 0.00 0.00 39.10 5.19
7207 13859 1.822506 GGACTTGAAACCTAGTGGGC 58.177 55.000 0.00 0.00 39.10 5.36
7213 13866 0.035739 GCACCCGGACTTGAAACCTA 59.964 55.000 0.73 0.00 0.00 3.08
7222 13875 1.895020 TAAATGCGAGCACCCGGACT 61.895 55.000 0.73 0.00 31.57 3.85
7227 13880 1.334869 CCAGAATAAATGCGAGCACCC 59.665 52.381 0.00 0.00 0.00 4.61
7232 13885 9.390795 CTGAAATAAATCCAGAATAAATGCGAG 57.609 33.333 0.00 0.00 0.00 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.