Multiple sequence alignment - TraesCS2B01G464300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G464300 chr2B 100.000 2501 0 0 1 2501 658211787 658209287 0.000000e+00 4619.0
1 TraesCS2B01G464300 chr2B 87.592 814 60 19 3 778 790116166 790115356 0.000000e+00 905.0
2 TraesCS2B01G464300 chr2B 86.967 821 64 23 3 784 670339857 670340673 0.000000e+00 883.0
3 TraesCS2B01G464300 chr2B 85.980 806 74 26 3 773 741199694 741200495 0.000000e+00 826.0
4 TraesCS2B01G464300 chr2B 85.732 806 76 26 3 773 741229439 741230240 0.000000e+00 815.0
5 TraesCS2B01G464300 chr2D 97.365 835 19 2 780 1612 552607928 552607095 0.000000e+00 1417.0
6 TraesCS2B01G464300 chr2D 83.427 531 63 17 1613 2141 552607061 552606554 1.050000e-128 470.0
7 TraesCS2B01G464300 chr2D 83.641 434 40 16 369 787 87969347 87969764 1.820000e-101 379.0
8 TraesCS2B01G464300 chr2D 85.542 83 8 3 2108 2189 218047188 218047267 1.590000e-12 84.2
9 TraesCS2B01G464300 chr2A 95.289 849 24 3 780 1612 693243882 693243034 0.000000e+00 1332.0
10 TraesCS2B01G464300 chr2A 76.877 333 43 19 2187 2501 693242255 693241939 9.260000e-35 158.0
11 TraesCS2B01G464300 chr4A 88.257 826 54 21 3 790 713747330 713746510 0.000000e+00 948.0
12 TraesCS2B01G464300 chr6B 86.667 810 66 20 3 773 353538988 353538182 0.000000e+00 859.0
13 TraesCS2B01G464300 chr6B 91.767 498 41 0 995 1492 530572822 530573319 0.000000e+00 693.0
14 TraesCS2B01G464300 chr3B 86.768 786 56 31 38 778 39631553 39632335 0.000000e+00 832.0
15 TraesCS2B01G464300 chr5A 86.084 812 63 22 3 778 693855640 693856437 0.000000e+00 828.0
16 TraesCS2B01G464300 chr7A 85.345 812 69 21 3 778 204218809 204219606 0.000000e+00 795.0
17 TraesCS2B01G464300 chr7A 91.803 61 5 0 2135 2195 704896222 704896162 4.430000e-13 86.1
18 TraesCS2B01G464300 chr6A 92.169 498 39 0 995 1492 494477961 494478458 0.000000e+00 704.0
19 TraesCS2B01G464300 chr6D 91.767 498 41 0 995 1492 349915386 349914889 0.000000e+00 693.0
20 TraesCS2B01G464300 chr6D 83.453 417 39 15 369 771 258034834 258035234 6.580000e-96 361.0
21 TraesCS2B01G464300 chr5D 82.289 830 73 24 3 773 36575937 36576751 0.000000e+00 651.0
22 TraesCS2B01G464300 chr5B 83.550 231 25 5 566 784 531640074 531640303 1.170000e-48 204.0
23 TraesCS2B01G464300 chr5B 93.220 59 4 0 2137 2195 362030954 362030896 1.230000e-13 87.9
24 TraesCS2B01G464300 chr5B 93.103 58 4 0 2132 2189 556139887 556139944 4.430000e-13 86.1
25 TraesCS2B01G464300 chr7D 94.737 57 3 0 2139 2195 426783573 426783517 3.430000e-14 89.8
26 TraesCS2B01G464300 chr7D 91.935 62 4 1 2134 2195 478795419 478795359 4.430000e-13 86.1
27 TraesCS2B01G464300 chr4D 94.737 57 3 0 2139 2195 175088904 175088848 3.430000e-14 89.8
28 TraesCS2B01G464300 chr7B 87.013 77 7 3 2112 2186 117060579 117060654 1.590000e-12 84.2
29 TraesCS2B01G464300 chr3D 88.571 70 7 1 2127 2195 426879688 426879619 1.590000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G464300 chr2B 658209287 658211787 2500 True 4619.0 4619 100.000 1 2501 1 chr2B.!!$R1 2500
1 TraesCS2B01G464300 chr2B 790115356 790116166 810 True 905.0 905 87.592 3 778 1 chr2B.!!$R2 775
2 TraesCS2B01G464300 chr2B 670339857 670340673 816 False 883.0 883 86.967 3 784 1 chr2B.!!$F1 781
3 TraesCS2B01G464300 chr2B 741199694 741200495 801 False 826.0 826 85.980 3 773 1 chr2B.!!$F2 770
4 TraesCS2B01G464300 chr2B 741229439 741230240 801 False 815.0 815 85.732 3 773 1 chr2B.!!$F3 770
5 TraesCS2B01G464300 chr2D 552606554 552607928 1374 True 943.5 1417 90.396 780 2141 2 chr2D.!!$R1 1361
6 TraesCS2B01G464300 chr2A 693241939 693243882 1943 True 745.0 1332 86.083 780 2501 2 chr2A.!!$R1 1721
7 TraesCS2B01G464300 chr4A 713746510 713747330 820 True 948.0 948 88.257 3 790 1 chr4A.!!$R1 787
8 TraesCS2B01G464300 chr6B 353538182 353538988 806 True 859.0 859 86.667 3 773 1 chr6B.!!$R1 770
9 TraesCS2B01G464300 chr3B 39631553 39632335 782 False 832.0 832 86.768 38 778 1 chr3B.!!$F1 740
10 TraesCS2B01G464300 chr5A 693855640 693856437 797 False 828.0 828 86.084 3 778 1 chr5A.!!$F1 775
11 TraesCS2B01G464300 chr7A 204218809 204219606 797 False 795.0 795 85.345 3 778 1 chr7A.!!$F1 775
12 TraesCS2B01G464300 chr5D 36575937 36576751 814 False 651.0 651 82.289 3 773 1 chr5D.!!$F1 770

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
534 578 0.636647 GGGGAAGAATGGGGGATTGT 59.363 55.0 0.0 0.0 0.0 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1703 1863 0.179148 TCGGCATAGCTGTACACACG 60.179 55.0 0.0 0.0 36.18 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 69 8.673711 CCAAATTAACGAGTTCTCCATCAATTA 58.326 33.333 0.00 0.00 0.00 1.40
78 81 4.973168 TCCATCAATTATACCACCTGCTC 58.027 43.478 0.00 0.00 0.00 4.26
100 103 5.962433 TCCTCGATTTCGTCAACTTATTCT 58.038 37.500 0.00 0.00 40.80 2.40
106 109 6.237755 CGATTTCGTCAACTTATTCTACCACC 60.238 42.308 0.00 0.00 34.11 4.61
107 110 5.733620 TTCGTCAACTTATTCTACCACCT 57.266 39.130 0.00 0.00 0.00 4.00
225 230 1.856688 CGCGTCGATTTGGACAACA 59.143 52.632 0.00 0.00 36.73 3.33
263 268 0.891373 AGAGATCGATGGGCATACCG 59.109 55.000 0.54 0.00 44.64 4.02
534 578 0.636647 GGGGAAGAATGGGGGATTGT 59.363 55.000 0.00 0.00 0.00 2.71
538 595 3.204382 GGGAAGAATGGGGGATTGTAAGA 59.796 47.826 0.00 0.00 0.00 2.10
678 765 2.569046 GCGCGCGCATCGATTATG 60.569 61.111 46.11 12.36 41.67 1.90
773 884 3.125316 GCACTCGACCACTTTTTAGGATG 59.875 47.826 0.00 0.00 0.00 3.51
846 959 1.066002 CACAAAATGGGCCTCATAGCG 59.934 52.381 4.53 0.00 34.44 4.26
1533 1660 4.389992 CGAGAGCTTTTCTTGCATTACTGA 59.610 41.667 0.00 0.00 35.87 3.41
1538 1665 7.391554 AGAGCTTTTCTTGCATTACTGATGTTA 59.608 33.333 0.00 0.00 33.38 2.41
1566 1693 5.105554 TGCAATGTTGGATTATTACGGCTTT 60.106 36.000 0.00 0.00 0.00 3.51
1568 1695 4.974368 TGTTGGATTATTACGGCTTTGG 57.026 40.909 0.00 0.00 0.00 3.28
1570 1697 4.156922 TGTTGGATTATTACGGCTTTGGTG 59.843 41.667 0.00 0.00 0.00 4.17
1596 1723 6.772716 AGTCCATTCTGGTATTTTATTGCGAT 59.227 34.615 0.00 0.00 39.03 4.58
1612 1739 8.541133 TTATTGCGATCGGTAAAATATGATGA 57.459 30.769 18.30 0.00 0.00 2.92
1614 1741 7.433708 TTGCGATCGGTAAAATATGATGAAT 57.566 32.000 18.30 0.00 0.00 2.57
1615 1742 8.541133 TTGCGATCGGTAAAATATGATGAATA 57.459 30.769 18.30 0.00 0.00 1.75
1617 1744 7.600752 TGCGATCGGTAAAATATGATGAATACA 59.399 33.333 18.30 0.00 0.00 2.29
1618 1745 8.440059 GCGATCGGTAAAATATGATGAATACAA 58.560 33.333 18.30 0.00 0.00 2.41
1619 1746 9.741168 CGATCGGTAAAATATGATGAATACAAC 57.259 33.333 7.38 0.00 0.00 3.32
1621 1748 8.385898 TCGGTAAAATATGATGAATACAACCC 57.614 34.615 0.00 0.00 0.00 4.11
1630 1790 3.965379 TGAATACAACCCGCTACAAGA 57.035 42.857 0.00 0.00 0.00 3.02
1662 1822 7.122055 CCCCTTGTAGTATTAAGTGAATTGCAA 59.878 37.037 0.00 0.00 0.00 4.08
1712 1872 0.175989 TCAACAGTGCCGTGTGTACA 59.824 50.000 0.00 0.00 31.00 2.90
1713 1873 0.581529 CAACAGTGCCGTGTGTACAG 59.418 55.000 0.00 0.00 31.00 2.74
1720 1880 1.429148 GCCGTGTGTACAGCTATGCC 61.429 60.000 0.00 0.00 0.00 4.40
1738 1898 2.550606 TGCCGACCTGTTTGTTTCATAC 59.449 45.455 0.00 0.00 0.00 2.39
1739 1899 2.412325 GCCGACCTGTTTGTTTCATACG 60.412 50.000 0.00 0.00 0.00 3.06
1742 2144 4.201685 CCGACCTGTTTGTTTCATACGATC 60.202 45.833 0.00 0.00 0.00 3.69
1745 2147 6.422776 ACCTGTTTGTTTCATACGATCATC 57.577 37.500 0.00 0.00 0.00 2.92
1758 2160 9.667989 TTCATACGATCATCTATTGCAAATTTG 57.332 29.630 14.03 14.03 0.00 2.32
1804 2206 7.227156 AGTTTGTGGAGACATGAGTTTCTATT 58.773 34.615 0.00 0.00 46.14 1.73
1805 2207 7.173907 AGTTTGTGGAGACATGAGTTTCTATTG 59.826 37.037 0.00 0.00 46.14 1.90
1813 2215 9.817809 GAGACATGAGTTTCTATTGTGGTATTA 57.182 33.333 0.00 0.00 0.00 0.98
1816 2218 9.733556 ACATGAGTTTCTATTGTGGTATTAACA 57.266 29.630 0.00 0.00 0.00 2.41
1821 2223 5.702065 TCTATTGTGGTATTAACAGGGCA 57.298 39.130 0.00 0.00 0.00 5.36
1825 2227 3.833732 TGTGGTATTAACAGGGCAACAA 58.166 40.909 0.00 0.00 39.74 2.83
1835 2237 2.831526 ACAGGGCAACAAGTTCTGTTTT 59.168 40.909 1.32 0.00 46.49 2.43
1884 2288 7.875316 TTAGTTCTCTTTCAATCTTGAGTCG 57.125 36.000 0.00 0.00 38.61 4.18
1890 2294 7.658261 TCTCTTTCAATCTTGAGTCGAAGTAA 58.342 34.615 0.00 0.00 38.61 2.24
1892 2296 7.434492 TCTTTCAATCTTGAGTCGAAGTAAGT 58.566 34.615 0.00 0.00 38.61 2.24
1897 2301 8.335356 TCAATCTTGAGTCGAAGTAAGTTTTTG 58.665 33.333 0.00 0.02 32.50 2.44
1899 2303 7.605410 TCTTGAGTCGAAGTAAGTTTTTGTT 57.395 32.000 0.00 0.00 0.00 2.83
1901 2305 9.153721 TCTTGAGTCGAAGTAAGTTTTTGTTTA 57.846 29.630 0.00 0.00 0.00 2.01
1902 2306 9.207042 CTTGAGTCGAAGTAAGTTTTTGTTTAC 57.793 33.333 0.00 0.00 0.00 2.01
1903 2307 8.483307 TGAGTCGAAGTAAGTTTTTGTTTACT 57.517 30.769 0.00 0.00 40.77 2.24
1904 2308 9.585099 TGAGTCGAAGTAAGTTTTTGTTTACTA 57.415 29.630 0.00 0.00 38.73 1.82
1928 2332 4.910458 ACTAGGCTTGGTTAATCACTGT 57.090 40.909 0.00 0.00 0.00 3.55
1930 2334 6.368779 ACTAGGCTTGGTTAATCACTGTTA 57.631 37.500 0.00 0.00 0.00 2.41
1933 2337 6.368779 AGGCTTGGTTAATCACTGTTACTA 57.631 37.500 0.00 0.00 0.00 1.82
1948 2352 9.787435 TCACTGTTACTATTTTGTTTATGGAGT 57.213 29.630 0.00 0.00 0.00 3.85
2018 2424 8.293699 TGTACCTATACCTATCATATGCACTG 57.706 38.462 0.00 0.00 0.00 3.66
2048 2454 8.668353 TGATATTGTTTGAGTGATAAGTTGCTC 58.332 33.333 0.00 0.00 0.00 4.26
2061 2467 7.934120 GTGATAAGTTGCTCCTAAATCTACCAT 59.066 37.037 0.00 0.00 0.00 3.55
2080 2486 6.402981 ACCATCCCAGTAGTTCCTTATTTT 57.597 37.500 0.00 0.00 0.00 1.82
2085 2491 6.708285 TCCCAGTAGTTCCTTATTTTCTGAC 58.292 40.000 0.00 0.00 0.00 3.51
2102 2508 5.296151 TCTGACTTGCAGGATAAATAGGG 57.704 43.478 1.40 0.00 44.98 3.53
2115 2521 5.598417 GGATAAATAGGGGCAGATGTTTTGT 59.402 40.000 0.00 0.00 0.00 2.83
2117 2523 5.823861 AAATAGGGGCAGATGTTTTGTTT 57.176 34.783 0.00 0.00 0.00 2.83
2130 2536 9.719279 CAGATGTTTTGTTTATTTGTTGCAAAT 57.281 25.926 0.00 11.18 0.00 2.32
2144 2550 8.810652 TTTGTTGCAAATTTCTATTGTACTCC 57.189 30.769 0.00 0.00 0.00 3.85
2145 2551 6.919721 TGTTGCAAATTTCTATTGTACTCCC 58.080 36.000 0.00 0.00 0.00 4.30
2146 2552 6.719370 TGTTGCAAATTTCTATTGTACTCCCT 59.281 34.615 0.00 0.00 0.00 4.20
2147 2553 7.094377 TGTTGCAAATTTCTATTGTACTCCCTC 60.094 37.037 0.00 0.00 0.00 4.30
2148 2554 5.885912 TGCAAATTTCTATTGTACTCCCTCC 59.114 40.000 0.00 0.00 0.00 4.30
2149 2555 5.007724 GCAAATTTCTATTGTACTCCCTCCG 59.992 44.000 0.00 0.00 0.00 4.63
2150 2556 5.952347 AATTTCTATTGTACTCCCTCCGT 57.048 39.130 0.00 0.00 0.00 4.69
2151 2557 4.996788 TTTCTATTGTACTCCCTCCGTC 57.003 45.455 0.00 0.00 0.00 4.79
2152 2558 2.941480 TCTATTGTACTCCCTCCGTCC 58.059 52.381 0.00 0.00 0.00 4.79
2153 2559 1.962100 CTATTGTACTCCCTCCGTCCC 59.038 57.143 0.00 0.00 0.00 4.46
2154 2560 0.042131 ATTGTACTCCCTCCGTCCCA 59.958 55.000 0.00 0.00 0.00 4.37
2155 2561 0.178926 TTGTACTCCCTCCGTCCCAA 60.179 55.000 0.00 0.00 0.00 4.12
2156 2562 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
2157 2563 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
2158 2564 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
2159 2565 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2160 2566 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2161 2567 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
2162 2568 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2163 2569 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2164 2570 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
2165 2571 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
2166 2572 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
2167 2573 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
2168 2574 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
2169 2575 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
2170 2576 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
2171 2577 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
2172 2578 5.238650 CGTCCCAAAATAAGTGTCTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
2173 2579 6.238648 CGTCCCAAAATAAGTGTCTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
2174 2580 6.918022 GTCCCAAAATAAGTGTCTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
2175 2581 6.605594 TCCCAAAATAAGTGTCTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
2176 2582 7.776030 TCCCAAAATAAGTGTCTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
2177 2583 7.860872 CCCAAAATAAGTGTCTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
2178 2584 7.860872 CCAAAATAAGTGTCTCAACTTTGTACC 59.139 37.037 0.00 0.00 40.77 3.34
2179 2585 8.402472 CAAAATAAGTGTCTCAACTTTGTACCA 58.598 33.333 0.00 0.00 40.77 3.25
2180 2586 7.730364 AATAAGTGTCTCAACTTTGTACCAG 57.270 36.000 0.00 0.00 40.77 4.00
2181 2587 4.073293 AGTGTCTCAACTTTGTACCAGG 57.927 45.455 0.00 0.00 0.00 4.45
2182 2588 3.454812 AGTGTCTCAACTTTGTACCAGGT 59.545 43.478 0.00 0.00 0.00 4.00
2183 2589 4.080526 AGTGTCTCAACTTTGTACCAGGTT 60.081 41.667 0.00 0.00 0.00 3.50
2184 2590 4.638865 GTGTCTCAACTTTGTACCAGGTTT 59.361 41.667 0.00 0.00 0.00 3.27
2185 2591 5.818857 GTGTCTCAACTTTGTACCAGGTTTA 59.181 40.000 0.00 0.00 0.00 2.01
2186 2592 6.018180 GTGTCTCAACTTTGTACCAGGTTTAG 60.018 42.308 0.00 0.00 0.00 1.85
2187 2593 6.053650 GTCTCAACTTTGTACCAGGTTTAGT 58.946 40.000 0.00 0.00 0.00 2.24
2188 2594 7.147689 TGTCTCAACTTTGTACCAGGTTTAGTA 60.148 37.037 0.00 0.00 0.00 1.82
2189 2595 7.876582 GTCTCAACTTTGTACCAGGTTTAGTAT 59.123 37.037 0.00 0.00 0.00 2.12
2190 2596 7.876068 TCTCAACTTTGTACCAGGTTTAGTATG 59.124 37.037 0.00 0.00 0.00 2.39
2191 2597 7.737869 TCAACTTTGTACCAGGTTTAGTATGA 58.262 34.615 0.00 1.83 0.00 2.15
2201 2607 8.147244 ACCAGGTTTAGTATGAAGTAACTGAT 57.853 34.615 0.00 0.00 0.00 2.90
2214 2621 6.483307 TGAAGTAACTGATGTCTTGTTCTTGG 59.517 38.462 0.00 0.00 0.00 3.61
2215 2622 6.174720 AGTAACTGATGTCTTGTTCTTGGA 57.825 37.500 0.00 0.00 0.00 3.53
2241 2648 9.016576 AGATGTATCTTTGTTTTGCGCTAGCAT 62.017 37.037 16.45 0.00 43.49 3.79
2293 2712 5.649782 ATGTTTGTCTTGAATCATGTCCC 57.350 39.130 0.00 0.00 0.00 4.46
2294 2713 4.728772 TGTTTGTCTTGAATCATGTCCCT 58.271 39.130 0.00 0.00 0.00 4.20
2295 2714 4.761739 TGTTTGTCTTGAATCATGTCCCTC 59.238 41.667 0.00 0.00 0.00 4.30
2296 2715 4.916041 TTGTCTTGAATCATGTCCCTCT 57.084 40.909 0.00 0.00 0.00 3.69
2297 2716 4.212143 TGTCTTGAATCATGTCCCTCTG 57.788 45.455 0.00 0.00 0.00 3.35
2298 2717 2.941720 GTCTTGAATCATGTCCCTCTGC 59.058 50.000 0.00 0.00 0.00 4.26
2300 2719 1.288188 TGAATCATGTCCCTCTGCCA 58.712 50.000 0.00 0.00 0.00 4.92
2301 2720 1.848388 TGAATCATGTCCCTCTGCCAT 59.152 47.619 0.00 0.00 0.00 4.40
2302 2721 2.158711 TGAATCATGTCCCTCTGCCATC 60.159 50.000 0.00 0.00 0.00 3.51
2303 2722 1.817087 ATCATGTCCCTCTGCCATCT 58.183 50.000 0.00 0.00 0.00 2.90
2304 2723 0.835276 TCATGTCCCTCTGCCATCTG 59.165 55.000 0.00 0.00 0.00 2.90
2305 2724 0.545171 CATGTCCCTCTGCCATCTGT 59.455 55.000 0.00 0.00 0.00 3.41
2308 2727 2.481441 TGTCCCTCTGCCATCTGTATT 58.519 47.619 0.00 0.00 0.00 1.89
2319 2738 7.761409 TCTGCCATCTGTATTGTTATTTGAAC 58.239 34.615 0.00 0.00 0.00 3.18
2321 2740 8.065473 TGCCATCTGTATTGTTATTTGAACAT 57.935 30.769 0.00 0.00 0.00 2.71
2322 2741 8.530311 TGCCATCTGTATTGTTATTTGAACATT 58.470 29.630 0.00 0.00 0.00 2.71
2323 2742 8.810427 GCCATCTGTATTGTTATTTGAACATTG 58.190 33.333 0.00 0.00 0.00 2.82
2324 2743 9.304731 CCATCTGTATTGTTATTTGAACATTGG 57.695 33.333 0.00 0.00 0.00 3.16
2325 2744 9.859427 CATCTGTATTGTTATTTGAACATTGGT 57.141 29.630 0.00 0.00 0.00 3.67
2329 2748 8.784994 TGTATTGTTATTTGAACATTGGTACGT 58.215 29.630 0.00 0.00 0.00 3.57
2330 2749 9.615295 GTATTGTTATTTGAACATTGGTACGTT 57.385 29.630 0.00 0.00 0.00 3.99
2331 2750 8.736751 ATTGTTATTTGAACATTGGTACGTTC 57.263 30.769 0.00 4.87 41.53 3.95
2333 2752 8.604640 TGTTATTTGAACATTGGTACGTTCTA 57.395 30.769 11.16 3.22 41.67 2.10
2334 2753 8.714179 TGTTATTTGAACATTGGTACGTTCTAG 58.286 33.333 11.16 0.00 41.67 2.43
2335 2754 8.715088 GTTATTTGAACATTGGTACGTTCTAGT 58.285 33.333 11.16 5.13 41.67 2.57
2336 2755 6.533819 TTTGAACATTGGTACGTTCTAGTG 57.466 37.500 11.16 0.00 41.67 2.74
2337 2756 4.562082 TGAACATTGGTACGTTCTAGTGG 58.438 43.478 11.16 0.00 41.67 4.00
2338 2757 2.968675 ACATTGGTACGTTCTAGTGGC 58.031 47.619 0.00 0.00 0.00 5.01
2339 2758 2.277084 CATTGGTACGTTCTAGTGGCC 58.723 52.381 0.00 0.00 0.00 5.36
2341 2760 2.512692 TGGTACGTTCTAGTGGCCTA 57.487 50.000 3.32 0.00 0.00 3.93
2342 2761 2.806434 TGGTACGTTCTAGTGGCCTAA 58.194 47.619 3.32 0.00 0.00 2.69
2345 2764 4.223477 TGGTACGTTCTAGTGGCCTAATTT 59.777 41.667 3.32 0.00 0.00 1.82
2346 2765 5.181009 GGTACGTTCTAGTGGCCTAATTTT 58.819 41.667 3.32 0.00 0.00 1.82
2347 2766 5.064325 GGTACGTTCTAGTGGCCTAATTTTG 59.936 44.000 3.32 0.00 0.00 2.44
2348 2767 4.901868 ACGTTCTAGTGGCCTAATTTTGA 58.098 39.130 3.32 0.00 0.00 2.69
2349 2768 5.497474 ACGTTCTAGTGGCCTAATTTTGAT 58.503 37.500 3.32 0.00 0.00 2.57
2350 2769 5.585047 ACGTTCTAGTGGCCTAATTTTGATC 59.415 40.000 3.32 0.00 0.00 2.92
2353 2772 5.437060 TCTAGTGGCCTAATTTTGATCCAC 58.563 41.667 3.32 11.30 43.03 4.02
2355 2774 2.099098 GTGGCCTAATTTTGATCCACGG 59.901 50.000 3.32 0.00 35.28 4.94
2361 2780 4.023707 CCTAATTTTGATCCACGGATGCTC 60.024 45.833 2.54 0.00 34.60 4.26
2362 2781 1.750193 TTTTGATCCACGGATGCTCC 58.250 50.000 2.54 0.00 34.60 4.70
2370 2789 0.467384 CACGGATGCTCCTGATCCTT 59.533 55.000 0.00 0.00 37.79 3.36
2371 2790 1.688735 CACGGATGCTCCTGATCCTTA 59.311 52.381 0.00 0.00 37.79 2.69
2373 2792 2.975489 ACGGATGCTCCTGATCCTTAAT 59.025 45.455 0.00 0.00 37.79 1.40
2374 2793 3.007398 ACGGATGCTCCTGATCCTTAATC 59.993 47.826 0.00 0.00 37.79 1.75
2375 2794 3.007290 CGGATGCTCCTGATCCTTAATCA 59.993 47.826 0.00 0.00 42.21 2.57
2391 2810 8.918202 TCCTTAATCAGTTTCTTGCTTTCTTA 57.082 30.769 0.00 0.00 0.00 2.10
2400 2819 4.992381 TCTTGCTTTCTTAGAAACGAGC 57.008 40.909 2.94 6.74 0.00 5.03
2404 2823 4.827692 TGCTTTCTTAGAAACGAGCCATA 58.172 39.130 12.75 0.00 0.00 2.74
2405 2824 4.870426 TGCTTTCTTAGAAACGAGCCATAG 59.130 41.667 12.75 0.00 0.00 2.23
2406 2825 4.870991 GCTTTCTTAGAAACGAGCCATAGT 59.129 41.667 2.94 0.00 0.00 2.12
2407 2826 5.351740 GCTTTCTTAGAAACGAGCCATAGTT 59.648 40.000 2.94 0.00 0.00 2.24
2419 2839 5.116180 CGAGCCATAGTTTCATCTTACCAA 58.884 41.667 0.00 0.00 0.00 3.67
2492 2913 6.329986 TGATGATATGGAAGTCATACCCTGTT 59.670 38.462 0.00 0.00 40.75 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.769300 GGGCATTTTCATGTTCCTAGGTT 59.231 43.478 9.08 0.00 32.28 3.50
1 2 3.365472 GGGCATTTTCATGTTCCTAGGT 58.635 45.455 9.08 0.00 32.28 3.08
12 13 1.152652 ACCACACGGGGCATTTTCA 60.153 52.632 0.00 0.00 42.91 2.69
66 69 1.794714 AATCGAGGAGCAGGTGGTAT 58.205 50.000 0.00 0.00 0.00 2.73
78 81 6.198591 GGTAGAATAAGTTGACGAAATCGAGG 59.801 42.308 10.16 0.00 43.02 4.63
100 103 1.676678 GATGCGCTCCTCAGGTGGTA 61.677 60.000 9.73 0.00 0.00 3.25
106 109 2.279120 GGTCGATGCGCTCCTCAG 60.279 66.667 9.73 0.47 0.00 3.35
107 110 3.838271 GGGTCGATGCGCTCCTCA 61.838 66.667 9.73 0.00 0.00 3.86
243 248 1.135257 CGGTATGCCCATCGATCTCTC 60.135 57.143 0.00 0.00 0.00 3.20
263 268 2.478033 AAAATCGCGGCGAATCCCC 61.478 57.895 29.93 0.00 39.99 4.81
451 492 0.172578 CGATTCGGTGGTAGTCTGCA 59.827 55.000 0.00 0.00 0.00 4.41
564 629 0.191064 TGTTCCTCTCCACTCACCCT 59.809 55.000 0.00 0.00 0.00 4.34
568 655 1.429299 TCTCCTGTTCCTCTCCACTCA 59.571 52.381 0.00 0.00 0.00 3.41
678 765 1.282875 GTCGCCAGGTGAAAACAGC 59.717 57.895 3.59 0.00 0.00 4.40
725 836 2.786777 TGTCTTACAGAGCACTCGGTA 58.213 47.619 6.57 6.57 38.81 4.02
850 963 2.189676 TCATTCGGGTAGGGCTTTGTA 58.810 47.619 0.00 0.00 0.00 2.41
860 975 2.025898 TCGTGCTGTATCATTCGGGTA 58.974 47.619 0.00 0.00 0.00 3.69
1098 1225 4.862823 GGGGAGAGACCGAGGGGG 62.863 77.778 0.00 0.00 43.62 5.40
1538 1665 6.272318 CCGTAATAATCCAACATTGCATTGT 58.728 36.000 8.41 8.41 0.00 2.71
1596 1723 7.171848 CGGGTTGTATTCATCATATTTTACCGA 59.828 37.037 0.00 0.00 35.01 4.69
1612 1739 6.349860 GGAAATTTCTTGTAGCGGGTTGTATT 60.350 38.462 17.42 0.00 0.00 1.89
1614 1741 4.456566 GGAAATTTCTTGTAGCGGGTTGTA 59.543 41.667 17.42 0.00 0.00 2.41
1615 1742 3.254903 GGAAATTTCTTGTAGCGGGTTGT 59.745 43.478 17.42 0.00 0.00 3.32
1617 1744 2.823747 GGGAAATTTCTTGTAGCGGGTT 59.176 45.455 17.42 0.00 0.00 4.11
1618 1745 2.443416 GGGAAATTTCTTGTAGCGGGT 58.557 47.619 17.42 0.00 0.00 5.28
1619 1746 1.749063 GGGGAAATTTCTTGTAGCGGG 59.251 52.381 17.42 0.00 0.00 6.13
1620 1747 2.723273 AGGGGAAATTTCTTGTAGCGG 58.277 47.619 17.42 0.00 0.00 5.52
1621 1748 3.506067 ACAAGGGGAAATTTCTTGTAGCG 59.494 43.478 17.84 6.00 46.12 4.26
1630 1790 9.816787 TTCACTTAATACTACAAGGGGAAATTT 57.183 29.630 0.00 0.00 0.00 1.82
1647 1807 8.714179 CACAACATGATTTGCAATTCACTTAAT 58.286 29.630 22.52 7.24 0.00 1.40
1652 1812 5.462729 TGACACAACATGATTTGCAATTCAC 59.537 36.000 22.52 10.49 0.00 3.18
1662 1822 6.159299 TGTCCATTTTGACACAACATGATT 57.841 33.333 0.00 0.00 40.22 2.57
1664 1824 5.588958 TTGTCCATTTTGACACAACATGA 57.411 34.783 0.00 0.00 44.55 3.07
1665 1825 6.659361 TTTTGTCCATTTTGACACAACATG 57.341 33.333 0.00 0.00 44.55 3.21
1690 1850 1.388547 ACACACGGCACTGTTGAATT 58.611 45.000 0.00 0.00 0.00 2.17
1703 1863 0.179148 TCGGCATAGCTGTACACACG 60.179 55.000 0.00 0.00 36.18 4.49
1712 1872 0.324943 ACAAACAGGTCGGCATAGCT 59.675 50.000 0.00 0.00 0.00 3.32
1713 1873 1.165270 AACAAACAGGTCGGCATAGC 58.835 50.000 0.00 0.00 0.00 2.97
1720 1880 4.387559 TGATCGTATGAAACAAACAGGTCG 59.612 41.667 0.00 0.00 0.00 4.79
1762 2164 9.295825 TCCACAAACTATTTCAACAGAACATAT 57.704 29.630 0.00 0.00 0.00 1.78
1763 2165 8.684386 TCCACAAACTATTTCAACAGAACATA 57.316 30.769 0.00 0.00 0.00 2.29
1764 2166 7.502226 TCTCCACAAACTATTTCAACAGAACAT 59.498 33.333 0.00 0.00 0.00 2.71
1767 2169 6.826231 TGTCTCCACAAACTATTTCAACAGAA 59.174 34.615 0.00 0.00 0.00 3.02
1779 2181 5.041191 AGAAACTCATGTCTCCACAAACT 57.959 39.130 0.00 0.00 35.64 2.66
1781 2183 6.998074 ACAATAGAAACTCATGTCTCCACAAA 59.002 34.615 0.00 0.00 35.64 2.83
1804 2206 3.510531 TGTTGCCCTGTTAATACCACA 57.489 42.857 0.00 0.00 0.00 4.17
1805 2207 3.824443 ACTTGTTGCCCTGTTAATACCAC 59.176 43.478 0.00 0.00 0.00 4.16
1813 2215 2.143876 ACAGAACTTGTTGCCCTGTT 57.856 45.000 0.00 0.00 36.31 3.16
1825 2227 7.396540 AGAGATCAAAACACAAAACAGAACT 57.603 32.000 0.00 0.00 0.00 3.01
1833 2235 9.607988 TGAACTACTTAGAGATCAAAACACAAA 57.392 29.630 0.00 0.00 0.00 2.83
1835 2237 9.778741 AATGAACTACTTAGAGATCAAAACACA 57.221 29.630 0.00 0.00 0.00 3.72
1892 2296 9.577222 ACCAAGCCTAGTTATAGTAAACAAAAA 57.423 29.630 0.00 0.00 0.00 1.94
1901 2305 8.204836 CAGTGATTAACCAAGCCTAGTTATAGT 58.795 37.037 0.00 0.00 0.00 2.12
1902 2306 8.204836 ACAGTGATTAACCAAGCCTAGTTATAG 58.795 37.037 0.00 0.00 0.00 1.31
1903 2307 8.086143 ACAGTGATTAACCAAGCCTAGTTATA 57.914 34.615 0.00 0.00 0.00 0.98
1904 2308 6.958767 ACAGTGATTAACCAAGCCTAGTTAT 58.041 36.000 0.00 0.00 0.00 1.89
1907 2311 4.910458 ACAGTGATTAACCAAGCCTAGT 57.090 40.909 0.00 0.00 0.00 2.57
1910 2314 5.242795 AGTAACAGTGATTAACCAAGCCT 57.757 39.130 0.00 0.00 0.00 4.58
1912 2316 9.341899 CAAAATAGTAACAGTGATTAACCAAGC 57.658 33.333 0.00 0.00 0.00 4.01
1995 2401 8.749354 CAACAGTGCATATGATAGGTATAGGTA 58.251 37.037 6.97 0.00 0.00 3.08
1996 2402 7.235606 ACAACAGTGCATATGATAGGTATAGGT 59.764 37.037 6.97 0.00 0.00 3.08
1997 2403 7.547019 CACAACAGTGCATATGATAGGTATAGG 59.453 40.741 6.97 0.00 0.00 2.57
1998 2404 8.306761 TCACAACAGTGCATATGATAGGTATAG 58.693 37.037 6.97 0.00 33.28 1.31
1999 2405 8.189119 TCACAACAGTGCATATGATAGGTATA 57.811 34.615 6.97 0.00 33.28 1.47
2000 2406 7.066307 TCACAACAGTGCATATGATAGGTAT 57.934 36.000 6.97 0.00 33.28 2.73
2003 2409 8.448615 CAATATCACAACAGTGCATATGATAGG 58.551 37.037 6.97 0.00 33.74 2.57
2045 2451 3.648545 ACTGGGATGGTAGATTTAGGAGC 59.351 47.826 0.00 0.00 0.00 4.70
2048 2454 6.239629 GGAACTACTGGGATGGTAGATTTAGG 60.240 46.154 7.71 0.00 38.99 2.69
2061 2467 6.500751 AGTCAGAAAATAAGGAACTACTGGGA 59.499 38.462 0.00 0.00 38.49 4.37
2080 2486 4.103153 CCCCTATTTATCCTGCAAGTCAGA 59.897 45.833 0.00 0.00 45.72 3.27
2085 2491 3.152341 CTGCCCCTATTTATCCTGCAAG 58.848 50.000 0.00 0.00 0.00 4.01
2102 2508 6.135400 GCAACAAATAAACAAAACATCTGCC 58.865 36.000 0.00 0.00 0.00 4.85
2130 2536 3.703052 GGACGGAGGGAGTACAATAGAAA 59.297 47.826 0.00 0.00 0.00 2.52
2141 2547 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
2142 2548 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
2144 2550 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2145 2551 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
2146 2552 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
2147 2553 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
2148 2554 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
2149 2555 6.635030 AAGTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
2150 2556 6.605594 ACAAAGTTGAGACACTTATTTTGGGA 59.394 34.615 0.00 0.00 35.87 4.37
2151 2557 6.805713 ACAAAGTTGAGACACTTATTTTGGG 58.194 36.000 0.00 0.00 35.87 4.12
2152 2558 7.860872 GGTACAAAGTTGAGACACTTATTTTGG 59.139 37.037 0.00 0.00 35.87 3.28
2153 2559 8.402472 TGGTACAAAGTTGAGACACTTATTTTG 58.598 33.333 0.00 0.00 35.87 2.44
2154 2560 8.514330 TGGTACAAAGTTGAGACACTTATTTT 57.486 30.769 0.00 0.00 35.87 1.82
2155 2561 7.228706 CCTGGTACAAAGTTGAGACACTTATTT 59.771 37.037 0.00 0.00 38.70 1.40
2156 2562 6.710744 CCTGGTACAAAGTTGAGACACTTATT 59.289 38.462 0.00 0.00 38.70 1.40
2157 2563 6.183361 ACCTGGTACAAAGTTGAGACACTTAT 60.183 38.462 0.00 0.00 38.70 1.73
2158 2564 5.129815 ACCTGGTACAAAGTTGAGACACTTA 59.870 40.000 0.00 0.00 38.70 2.24
2159 2565 4.080526 ACCTGGTACAAAGTTGAGACACTT 60.081 41.667 0.00 0.00 38.70 3.16
2160 2566 3.454812 ACCTGGTACAAAGTTGAGACACT 59.545 43.478 0.00 0.00 38.70 3.55
2161 2567 3.805207 ACCTGGTACAAAGTTGAGACAC 58.195 45.455 0.00 0.00 38.70 3.67
2162 2568 4.497291 AACCTGGTACAAAGTTGAGACA 57.503 40.909 0.00 0.00 38.70 3.41
2163 2569 6.053650 ACTAAACCTGGTACAAAGTTGAGAC 58.946 40.000 0.00 0.00 36.01 3.36
2164 2570 6.243216 ACTAAACCTGGTACAAAGTTGAGA 57.757 37.500 0.00 0.00 36.01 3.27
2165 2571 7.876068 TCATACTAAACCTGGTACAAAGTTGAG 59.124 37.037 0.00 0.00 38.45 3.02
2166 2572 7.737869 TCATACTAAACCTGGTACAAAGTTGA 58.262 34.615 0.00 5.89 38.70 3.18
2167 2573 7.972832 TCATACTAAACCTGGTACAAAGTTG 57.027 36.000 0.00 3.97 38.70 3.16
2168 2574 8.215736 ACTTCATACTAAACCTGGTACAAAGTT 58.784 33.333 0.00 0.00 38.70 2.66
2169 2575 7.742767 ACTTCATACTAAACCTGGTACAAAGT 58.257 34.615 0.00 4.27 38.70 2.66
2170 2576 9.715121 TTACTTCATACTAAACCTGGTACAAAG 57.285 33.333 0.00 0.00 38.70 2.77
2171 2577 9.492973 GTTACTTCATACTAAACCTGGTACAAA 57.507 33.333 0.00 0.00 38.70 2.83
2172 2578 8.873144 AGTTACTTCATACTAAACCTGGTACAA 58.127 33.333 0.00 0.00 38.70 2.41
2173 2579 8.308931 CAGTTACTTCATACTAAACCTGGTACA 58.691 37.037 0.00 0.00 0.00 2.90
2174 2580 8.526147 TCAGTTACTTCATACTAAACCTGGTAC 58.474 37.037 0.00 0.00 0.00 3.34
2175 2581 8.654485 TCAGTTACTTCATACTAAACCTGGTA 57.346 34.615 0.00 0.00 0.00 3.25
2176 2582 7.549147 TCAGTTACTTCATACTAAACCTGGT 57.451 36.000 0.00 0.00 0.00 4.00
2177 2583 8.041323 ACATCAGTTACTTCATACTAAACCTGG 58.959 37.037 0.00 0.00 0.00 4.45
2178 2584 9.088512 GACATCAGTTACTTCATACTAAACCTG 57.911 37.037 0.00 0.00 0.00 4.00
2179 2585 9.036980 AGACATCAGTTACTTCATACTAAACCT 57.963 33.333 0.00 0.00 0.00 3.50
2180 2586 9.654663 AAGACATCAGTTACTTCATACTAAACC 57.345 33.333 0.00 0.00 0.00 3.27
2184 2590 9.856488 GAACAAGACATCAGTTACTTCATACTA 57.144 33.333 0.00 0.00 0.00 1.82
2185 2591 8.589338 AGAACAAGACATCAGTTACTTCATACT 58.411 33.333 0.00 0.00 0.00 2.12
2186 2592 8.764524 AGAACAAGACATCAGTTACTTCATAC 57.235 34.615 0.00 0.00 0.00 2.39
2187 2593 9.208022 CAAGAACAAGACATCAGTTACTTCATA 57.792 33.333 0.00 0.00 0.00 2.15
2188 2594 7.173907 CCAAGAACAAGACATCAGTTACTTCAT 59.826 37.037 0.00 0.00 0.00 2.57
2189 2595 6.483307 CCAAGAACAAGACATCAGTTACTTCA 59.517 38.462 0.00 0.00 0.00 3.02
2190 2596 6.706270 TCCAAGAACAAGACATCAGTTACTTC 59.294 38.462 0.00 0.00 0.00 3.01
2191 2597 6.591935 TCCAAGAACAAGACATCAGTTACTT 58.408 36.000 0.00 0.00 0.00 2.24
2201 2607 6.611613 AGATACATCTCCAAGAACAAGACA 57.388 37.500 0.00 0.00 29.30 3.41
2214 2621 4.974591 AGCGCAAAACAAAGATACATCTC 58.025 39.130 11.47 0.00 35.76 2.75
2215 2622 5.447818 GCTAGCGCAAAACAAAGATACATCT 60.448 40.000 11.47 0.00 35.77 2.90
2276 2695 3.620719 GCAGAGGGACATGATTCAAGACA 60.621 47.826 0.00 0.00 0.00 3.41
2279 2698 2.295885 GGCAGAGGGACATGATTCAAG 58.704 52.381 0.00 0.00 0.00 3.02
2280 2699 1.634973 TGGCAGAGGGACATGATTCAA 59.365 47.619 0.00 0.00 0.00 2.69
2293 2712 7.558161 TCAAATAACAATACAGATGGCAGAG 57.442 36.000 0.00 0.00 0.00 3.35
2294 2713 7.392953 TGTTCAAATAACAATACAGATGGCAGA 59.607 33.333 0.00 0.00 0.00 4.26
2295 2714 7.537715 TGTTCAAATAACAATACAGATGGCAG 58.462 34.615 0.00 0.00 0.00 4.85
2296 2715 7.459795 TGTTCAAATAACAATACAGATGGCA 57.540 32.000 0.00 0.00 0.00 4.92
2297 2716 8.810427 CAATGTTCAAATAACAATACAGATGGC 58.190 33.333 0.00 0.00 33.42 4.40
2298 2717 9.304731 CCAATGTTCAAATAACAATACAGATGG 57.695 33.333 0.00 0.00 33.42 3.51
2302 2721 9.272901 CGTACCAATGTTCAAATAACAATACAG 57.727 33.333 0.00 0.00 33.42 2.74
2303 2722 8.784994 ACGTACCAATGTTCAAATAACAATACA 58.215 29.630 0.00 0.00 33.42 2.29
2304 2723 9.615295 AACGTACCAATGTTCAAATAACAATAC 57.385 29.630 0.00 0.00 33.42 1.89
2305 2724 9.828852 GAACGTACCAATGTTCAAATAACAATA 57.171 29.630 6.52 0.00 46.58 1.90
2319 2738 2.093658 AGGCCACTAGAACGTACCAATG 60.094 50.000 5.01 0.00 0.00 2.82
2321 2740 1.636148 AGGCCACTAGAACGTACCAA 58.364 50.000 5.01 0.00 0.00 3.67
2322 2741 2.512692 TAGGCCACTAGAACGTACCA 57.487 50.000 5.01 0.00 0.00 3.25
2323 2742 4.397481 AATTAGGCCACTAGAACGTACC 57.603 45.455 5.01 0.00 0.00 3.34
2324 2743 5.870978 TCAAAATTAGGCCACTAGAACGTAC 59.129 40.000 5.01 0.00 0.00 3.67
2325 2744 6.040209 TCAAAATTAGGCCACTAGAACGTA 57.960 37.500 5.01 0.00 0.00 3.57
2327 2746 5.007724 GGATCAAAATTAGGCCACTAGAACG 59.992 44.000 5.01 0.00 0.00 3.95
2329 2748 5.885912 GTGGATCAAAATTAGGCCACTAGAA 59.114 40.000 5.01 0.00 41.82 2.10
2330 2749 5.437060 GTGGATCAAAATTAGGCCACTAGA 58.563 41.667 5.01 0.00 41.82 2.43
2331 2750 4.273480 CGTGGATCAAAATTAGGCCACTAG 59.727 45.833 5.01 0.00 42.64 2.57
2333 2752 3.016736 CGTGGATCAAAATTAGGCCACT 58.983 45.455 5.01 0.00 42.64 4.00
2334 2753 2.099098 CCGTGGATCAAAATTAGGCCAC 59.901 50.000 5.01 0.00 41.69 5.01
2335 2754 2.025793 TCCGTGGATCAAAATTAGGCCA 60.026 45.455 5.01 0.00 0.00 5.36
2336 2755 2.650322 TCCGTGGATCAAAATTAGGCC 58.350 47.619 0.00 0.00 0.00 5.19
2337 2756 3.550842 GCATCCGTGGATCAAAATTAGGC 60.551 47.826 0.00 0.00 31.62 3.93
2338 2757 3.885297 AGCATCCGTGGATCAAAATTAGG 59.115 43.478 0.00 0.00 31.62 2.69
2339 2758 5.100751 GAGCATCCGTGGATCAAAATTAG 57.899 43.478 0.00 0.00 31.62 1.73
2353 2772 3.007290 TGATTAAGGATCAGGAGCATCCG 59.993 47.826 0.00 0.00 46.23 4.18
2377 2796 5.277828 GGCTCGTTTCTAAGAAAGCAAGAAA 60.278 40.000 0.00 0.00 37.00 2.52
2378 2797 4.213482 GGCTCGTTTCTAAGAAAGCAAGAA 59.787 41.667 0.00 0.00 0.00 2.52
2379 2798 3.746492 GGCTCGTTTCTAAGAAAGCAAGA 59.254 43.478 0.00 0.00 0.00 3.02
2391 2810 5.091261 AGATGAAACTATGGCTCGTTTCT 57.909 39.130 19.51 10.67 45.59 2.52
2396 2815 4.693283 TGGTAAGATGAAACTATGGCTCG 58.307 43.478 0.00 0.00 0.00 5.03
2397 2816 7.573968 AATTGGTAAGATGAAACTATGGCTC 57.426 36.000 0.00 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.