Multiple sequence alignment - TraesCS2B01G463000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G463000 chr2B 100.000 6378 0 0 1 6378 656941619 656947996 0.000000e+00 11779.0
1 TraesCS2B01G463000 chr2B 90.282 3694 278 39 617 4289 656611648 656608015 0.000000e+00 4758.0
2 TraesCS2B01G463000 chr2B 85.435 3680 380 81 695 4289 656000271 655996663 0.000000e+00 3683.0
3 TraesCS2B01G463000 chr2B 85.247 3701 396 78 695 4288 656362307 656358650 0.000000e+00 3672.0
4 TraesCS2B01G463000 chr2B 85.061 3695 393 71 695 4289 656241150 656237515 0.000000e+00 3618.0
5 TraesCS2B01G463000 chr2B 88.536 2992 250 46 400 3324 691012320 691009355 0.000000e+00 3539.0
6 TraesCS2B01G463000 chr2B 91.819 1589 113 11 4459 6038 656607865 656606285 0.000000e+00 2198.0
7 TraesCS2B01G463000 chr2B 88.078 1493 123 20 4437 5928 691008399 691006961 0.000000e+00 1720.0
8 TraesCS2B01G463000 chr2B 86.638 1377 153 18 4506 5865 655996413 655995051 0.000000e+00 1495.0
9 TraesCS2B01G463000 chr2B 87.006 1062 83 29 3035 4077 634631041 634630016 0.000000e+00 1146.0
10 TraesCS2B01G463000 chr2B 90.636 833 51 11 3469 4289 691009336 691008519 0.000000e+00 1081.0
11 TraesCS2B01G463000 chr2B 100.000 163 0 0 6638 6800 656948256 656948418 1.110000e-77 302.0
12 TraesCS2B01G463000 chr2B 95.625 160 7 0 6641 6800 655994321 655994162 2.430000e-64 257.0
13 TraesCS2B01G463000 chr2B 94.479 163 9 0 6638 6800 656606016 656605854 1.130000e-62 252.0
14 TraesCS2B01G463000 chr2B 94.479 163 9 0 6638 6800 691006477 691006315 1.130000e-62 252.0
15 TraesCS2B01G463000 chr2B 88.506 87 9 1 4341 4427 656237524 656237439 3.350000e-18 104.0
16 TraesCS2B01G463000 chr2B 100.000 29 0 0 4450 4478 655996494 655996466 3.000000e-03 54.7
17 TraesCS2B01G463000 chr2D 85.776 3684 385 76 695 4289 549931937 549928304 0.000000e+00 3771.0
18 TraesCS2B01G463000 chr2D 85.726 3685 384 67 695 4289 550660618 550664250 0.000000e+00 3760.0
19 TraesCS2B01G463000 chr2D 84.427 3962 449 98 419 4289 549741664 549737780 0.000000e+00 3744.0
20 TraesCS2B01G463000 chr2D 84.301 3962 447 102 419 4289 550254415 550250538 0.000000e+00 3709.0
21 TraesCS2B01G463000 chr2D 89.671 2672 231 19 682 3324 574909494 574906839 0.000000e+00 3363.0
22 TraesCS2B01G463000 chr2D 94.685 2013 83 20 1620 3617 551428989 551430992 0.000000e+00 3103.0
23 TraesCS2B01G463000 chr2D 95.156 1631 38 10 4340 5929 551437973 551439603 0.000000e+00 2536.0
24 TraesCS2B01G463000 chr2D 88.279 1493 128 20 4437 5928 574905884 574904438 0.000000e+00 1744.0
25 TraesCS2B01G463000 chr2D 96.113 952 23 6 630 1580 551428054 551428992 0.000000e+00 1541.0
26 TraesCS2B01G463000 chr2D 87.997 1208 129 10 4657 5857 549737342 549736144 0.000000e+00 1413.0
27 TraesCS2B01G463000 chr2D 90.396 833 52 12 3469 4289 574906820 574906004 0.000000e+00 1070.0
28 TraesCS2B01G463000 chr2D 93.188 734 34 8 3606 4337 551437114 551437833 0.000000e+00 1064.0
29 TraesCS2B01G463000 chr2D 95.611 319 10 3 5938 6253 551439689 551440006 6.080000e-140 508.0
30 TraesCS2B01G463000 chr2D 93.728 287 11 3 37 323 551427719 551427998 2.270000e-114 424.0
31 TraesCS2B01G463000 chr2D 97.516 161 4 0 6640 6800 551445501 551445661 6.720000e-70 276.0
32 TraesCS2B01G463000 chr2D 96.319 163 6 0 6638 6800 574904047 574903885 1.120000e-67 268.0
33 TraesCS2B01G463000 chr2D 96.250 160 6 0 6641 6800 549924526 549924367 5.230000e-66 263.0
34 TraesCS2B01G463000 chr2D 96.250 160 6 0 6641 6800 550667229 550667388 5.230000e-66 263.0
35 TraesCS2B01G463000 chr2D 95.625 160 7 0 6641 6800 549735604 549735445 2.430000e-64 257.0
36 TraesCS2B01G463000 chr2D 95.625 160 7 0 6641 6800 550248308 550248149 2.430000e-64 257.0
37 TraesCS2B01G463000 chr2D 82.212 208 22 11 26 230 574910001 574909806 1.520000e-36 165.0
38 TraesCS2B01G463000 chr2D 83.916 143 18 4 4506 4644 550250365 550250224 1.540000e-26 132.0
39 TraesCS2B01G463000 chr2D 86.066 122 15 2 6081 6201 574904215 574904095 5.530000e-26 130.0
40 TraesCS2B01G463000 chr2D 83.217 143 19 4 4506 4644 549737607 549737466 7.160000e-25 126.0
41 TraesCS2B01G463000 chr2D 89.412 85 8 1 4341 4425 550664241 550664324 9.330000e-19 106.0
42 TraesCS2B01G463000 chr2D 96.364 55 2 0 397 451 551427997 551428051 2.610000e-14 91.6
43 TraesCS2B01G463000 chr2D 100.000 28 0 0 6226 6253 574904096 574904069 1.200000e-02 52.8
44 TraesCS2B01G463000 chr5D 86.181 2880 323 43 689 3532 395722640 395725480 0.000000e+00 3044.0
45 TraesCS2B01G463000 chr5D 86.514 2662 282 36 619 3253 395920823 395923434 0.000000e+00 2856.0
46 TraesCS2B01G463000 chr5D 88.950 1267 121 12 4661 5920 395924779 395926033 0.000000e+00 1546.0
47 TraesCS2B01G463000 chr5D 88.732 710 55 12 3598 4289 395725515 395726217 0.000000e+00 845.0
48 TraesCS2B01G463000 chr5D 92.405 79 5 1 321 399 332506332 332506255 2.000000e-20 111.0
49 TraesCS2B01G463000 chr5D 85.000 80 12 0 451 530 47732166 47732087 1.570000e-11 82.4
50 TraesCS2B01G463000 chr5D 90.323 62 5 1 52 113 395722272 395722332 5.650000e-11 80.5
51 TraesCS2B01G463000 chr5D 91.228 57 5 0 57 113 395919995 395920051 2.030000e-10 78.7
52 TraesCS2B01G463000 chr5D 79.091 110 16 5 619 728 47729605 47729503 1.220000e-07 69.4
53 TraesCS2B01G463000 chr5A 88.129 1272 124 18 4661 5921 501828093 501829348 0.000000e+00 1487.0
54 TraesCS2B01G463000 chr5A 88.471 1197 116 14 4661 5848 501819737 501820920 0.000000e+00 1426.0
55 TraesCS2B01G463000 chr5A 93.506 77 5 0 322 398 321667562 321667486 1.550000e-21 115.0
56 TraesCS2B01G463000 chr5A 90.805 87 6 1 322 406 638032980 638032894 1.550000e-21 115.0
57 TraesCS2B01G463000 chr5B 89.094 1192 118 10 4700 5884 475991165 475992351 0.000000e+00 1471.0
58 TraesCS2B01G463000 chr5B 91.228 57 5 0 57 113 475986457 475986513 2.030000e-10 78.7
59 TraesCS2B01G463000 chr1A 94.304 158 5 4 6223 6378 269572265 269572420 8.810000e-59 239.0
60 TraesCS2B01G463000 chr1A 96.350 137 4 1 6242 6378 82525873 82526008 2.470000e-54 224.0
61 TraesCS2B01G463000 chr4B 98.485 132 2 0 6247 6378 455621638 455621507 4.100000e-57 233.0
62 TraesCS2B01G463000 chr4B 97.778 135 1 2 6246 6378 193970688 193970554 1.470000e-56 231.0
63 TraesCS2B01G463000 chr4B 95.683 139 4 2 6240 6378 429720302 429720166 8.880000e-54 222.0
64 TraesCS2B01G463000 chr4B 90.244 82 6 2 322 402 517956751 517956671 9.330000e-19 106.0
65 TraesCS2B01G463000 chr3A 98.485 132 2 0 6247 6378 224366254 224366385 4.100000e-57 233.0
66 TraesCS2B01G463000 chr3A 91.667 84 4 2 322 402 469414637 469414720 5.570000e-21 113.0
67 TraesCS2B01G463000 chr1B 99.231 130 0 1 6250 6378 681774402 681774531 4.100000e-57 233.0
68 TraesCS2B01G463000 chr6B 96.403 139 4 1 6240 6378 129875767 129875904 1.910000e-55 228.0
69 TraesCS2B01G463000 chr4A 95.683 139 4 2 6240 6378 83274766 83274902 8.880000e-54 222.0
70 TraesCS2B01G463000 chr4A 94.805 77 4 0 322 398 598725733 598725657 3.330000e-23 121.0
71 TraesCS2B01G463000 chr4A 80.519 77 11 3 6209 6281 645108502 645108578 1.000000e-03 56.5
72 TraesCS2B01G463000 chr7A 96.053 76 2 1 322 397 350571793 350571867 9.260000e-24 122.0
73 TraesCS2B01G463000 chr3D 93.590 78 2 2 322 397 119114493 119114417 5.570000e-21 113.0
74 TraesCS2B01G463000 chr2A 87.500 96 6 6 322 415 61385989 61385898 9.330000e-19 106.0
75 TraesCS2B01G463000 chr2A 86.765 68 6 3 56 121 28024877 28024811 9.460000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G463000 chr2B 656941619 656948418 6799 False 6040.500000 11779 100.000000 1 6800 2 chr2B.!!$F1 6799
1 TraesCS2B01G463000 chr2B 656358650 656362307 3657 True 3672.000000 3672 85.247000 695 4288 1 chr2B.!!$R2 3593
2 TraesCS2B01G463000 chr2B 656605854 656611648 5794 True 2402.666667 4758 92.193333 617 6800 3 chr2B.!!$R5 6183
3 TraesCS2B01G463000 chr2B 656237439 656241150 3711 True 1861.000000 3618 86.783500 695 4427 2 chr2B.!!$R4 3732
4 TraesCS2B01G463000 chr2B 691006315 691012320 6005 True 1648.000000 3539 90.432250 400 6800 4 chr2B.!!$R6 6400
5 TraesCS2B01G463000 chr2B 655994162 656000271 6109 True 1372.425000 3683 91.924500 695 6800 4 chr2B.!!$R3 6105
6 TraesCS2B01G463000 chr2B 634630016 634631041 1025 True 1146.000000 1146 87.006000 3035 4077 1 chr2B.!!$R1 1042
7 TraesCS2B01G463000 chr2D 549924367 549931937 7570 True 2017.000000 3771 91.013000 695 6800 2 chr2D.!!$R2 6105
8 TraesCS2B01G463000 chr2D 549735445 549741664 6219 True 1385.000000 3744 87.816500 419 6800 4 chr2D.!!$R1 6381
9 TraesCS2B01G463000 chr2D 550660618 550667388 6770 False 1376.333333 3760 90.462667 695 6800 3 chr2D.!!$F2 6105
10 TraesCS2B01G463000 chr2D 551437114 551440006 2892 False 1369.333333 2536 94.651667 3606 6253 3 chr2D.!!$F4 2647
11 TraesCS2B01G463000 chr2D 550248149 550254415 6266 True 1366.000000 3709 87.947333 419 6800 3 chr2D.!!$R3 6381
12 TraesCS2B01G463000 chr2D 551427719 551430992 3273 False 1289.900000 3103 95.222500 37 3617 4 chr2D.!!$F3 3580
13 TraesCS2B01G463000 chr2D 574903885 574910001 6116 True 970.400000 3363 90.420429 26 6800 7 chr2D.!!$R4 6774
14 TraesCS2B01G463000 chr5D 395919995 395926033 6038 False 1493.566667 2856 88.897333 57 5920 3 chr5D.!!$F2 5863
15 TraesCS2B01G463000 chr5D 395722272 395726217 3945 False 1323.166667 3044 88.412000 52 4289 3 chr5D.!!$F1 4237
16 TraesCS2B01G463000 chr5A 501828093 501829348 1255 False 1487.000000 1487 88.129000 4661 5921 1 chr5A.!!$F2 1260
17 TraesCS2B01G463000 chr5A 501819737 501820920 1183 False 1426.000000 1426 88.471000 4661 5848 1 chr5A.!!$F1 1187
18 TraesCS2B01G463000 chr5B 475991165 475992351 1186 False 1471.000000 1471 89.094000 4700 5884 1 chr5B.!!$F2 1184

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
337 421 0.410663 TCTTACTCCCTCCGTCCCAA 59.589 55.000 0.00 0.00 0.00 4.12 F
472 883 0.687920 TCCTTTGCCCACGATGTACA 59.312 50.000 0.00 0.00 0.00 2.90 F
1013 1524 0.811616 CGTTCCATGGAGGTAGCAGC 60.812 60.000 15.53 0.00 39.02 5.25 F
1347 1861 3.743911 CACTTACCTTTGACACGCACATA 59.256 43.478 0.00 0.00 0.00 2.29 F
2153 2732 1.064825 GGGTTCACCTTCCTGGAAGA 58.935 55.000 32.80 14.44 41.71 2.87 F
3561 4268 0.848735 ATATCCACTGCATGTGCCCT 59.151 50.000 9.88 1.74 44.92 5.19 F
3805 4591 0.587768 CGATGCATGCGATGGCTTTA 59.412 50.000 14.09 0.00 40.82 1.85 F
4292 5098 0.676782 GTACCATGGTTTCAGCGGCT 60.677 55.000 25.38 0.00 0.00 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1530 2065 0.037975 GAAGCCAAACAGCCACCATG 60.038 55.000 0.0 0.0 0.00 3.66 R
1713 2291 1.001487 TCTGCATTTCAAACGTGCCAG 60.001 47.619 0.0 0.0 38.06 4.85 R
1928 2507 1.825090 AGCATTCCGCAAGTTCATCA 58.175 45.000 0.0 0.0 46.13 3.07 R
2646 3226 4.451629 ACAGTATAAAGAGGGTGACACG 57.548 45.455 0.0 0.0 0.00 4.49 R
3795 4581 0.029300 CCCGCACATTAAAGCCATCG 59.971 55.000 0.0 0.0 0.00 3.84 R
4715 5960 1.226746 CGGAACCTGAGAAAAAGCGT 58.773 50.000 0.0 0.0 0.00 5.07 R
4716 5961 1.226746 ACGGAACCTGAGAAAAAGCG 58.773 50.000 0.0 0.0 0.00 4.68 R
6284 10751 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.0 0.0 44.78 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 5.270893 TGCTCCAAATGATGAAATGATGG 57.729 39.130 0.00 0.00 0.00 3.51
43 44 0.910338 ATGATGGTGCTCTGCTCTGT 59.090 50.000 0.00 0.00 0.00 3.41
50 51 0.602060 TGCTCTGCTCTGTCTCTGTG 59.398 55.000 0.00 0.00 0.00 3.66
77 78 1.087202 GTGTGTTGTCCGTGTGCTCA 61.087 55.000 0.00 0.00 0.00 4.26
135 136 1.621107 CAATTGGCAAGTGCTTAGCG 58.379 50.000 15.17 0.00 41.70 4.26
157 158 1.150827 GCAAATTCAGTGCCCTTTGC 58.849 50.000 15.98 15.98 44.40 3.68
197 200 4.070716 GCCATTTCTGGACCATCTGATAG 58.929 47.826 0.00 0.00 46.37 2.08
254 308 4.872691 GGTGATACATGTCTGTCAGGAAAG 59.127 45.833 0.00 0.00 36.79 2.62
255 309 5.337571 GGTGATACATGTCTGTCAGGAAAGA 60.338 44.000 0.00 0.00 36.79 2.52
256 310 6.166279 GTGATACATGTCTGTCAGGAAAGAA 58.834 40.000 0.00 0.00 36.79 2.52
257 311 6.650807 GTGATACATGTCTGTCAGGAAAGAAA 59.349 38.462 0.00 0.00 36.79 2.52
276 341 4.644685 AGAAATTACAGTTGCTGTTGGTGT 59.355 37.500 7.11 0.00 42.59 4.16
324 408 5.121380 AGTTGGCATCCATGAATCTTACT 57.879 39.130 0.00 0.00 31.53 2.24
325 409 5.128919 AGTTGGCATCCATGAATCTTACTC 58.871 41.667 0.00 0.00 31.53 2.59
326 410 4.090761 TGGCATCCATGAATCTTACTCC 57.909 45.455 0.00 0.00 0.00 3.85
327 411 3.181440 TGGCATCCATGAATCTTACTCCC 60.181 47.826 0.00 0.00 0.00 4.30
328 412 3.073650 GGCATCCATGAATCTTACTCCCT 59.926 47.826 0.00 0.00 0.00 4.20
329 413 4.322567 GCATCCATGAATCTTACTCCCTC 58.677 47.826 0.00 0.00 0.00 4.30
330 414 4.805609 GCATCCATGAATCTTACTCCCTCC 60.806 50.000 0.00 0.00 0.00 4.30
332 416 2.700897 CCATGAATCTTACTCCCTCCGT 59.299 50.000 0.00 0.00 0.00 4.69
333 417 3.243907 CCATGAATCTTACTCCCTCCGTC 60.244 52.174 0.00 0.00 0.00 4.79
334 418 2.385803 TGAATCTTACTCCCTCCGTCC 58.614 52.381 0.00 0.00 0.00 4.79
335 419 1.687660 GAATCTTACTCCCTCCGTCCC 59.312 57.143 0.00 0.00 0.00 4.46
336 420 0.635009 ATCTTACTCCCTCCGTCCCA 59.365 55.000 0.00 0.00 0.00 4.37
337 421 0.410663 TCTTACTCCCTCCGTCCCAA 59.589 55.000 0.00 0.00 0.00 4.12
338 422 1.203212 TCTTACTCCCTCCGTCCCAAA 60.203 52.381 0.00 0.00 0.00 3.28
339 423 1.626825 CTTACTCCCTCCGTCCCAAAA 59.373 52.381 0.00 0.00 0.00 2.44
340 424 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
341 425 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
342 426 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
343 427 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
344 428 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
345 429 3.452878 TCCCTCCGTCCCAAAATAAGTA 58.547 45.455 0.00 0.00 0.00 2.24
346 430 4.042174 TCCCTCCGTCCCAAAATAAGTAT 58.958 43.478 0.00 0.00 0.00 2.12
347 431 4.102054 TCCCTCCGTCCCAAAATAAGTATC 59.898 45.833 0.00 0.00 0.00 2.24
348 432 4.102681 CCCTCCGTCCCAAAATAAGTATCT 59.897 45.833 0.00 0.00 0.00 1.98
349 433 5.298347 CCTCCGTCCCAAAATAAGTATCTC 58.702 45.833 0.00 0.00 0.00 2.75
350 434 5.163343 CCTCCGTCCCAAAATAAGTATCTCA 60.163 44.000 0.00 0.00 0.00 3.27
351 435 6.302535 TCCGTCCCAAAATAAGTATCTCAA 57.697 37.500 0.00 0.00 0.00 3.02
352 436 6.110707 TCCGTCCCAAAATAAGTATCTCAAC 58.889 40.000 0.00 0.00 0.00 3.18
353 437 6.070424 TCCGTCCCAAAATAAGTATCTCAACT 60.070 38.462 0.00 0.00 0.00 3.16
354 438 6.598064 CCGTCCCAAAATAAGTATCTCAACTT 59.402 38.462 0.00 0.00 42.31 2.66
355 439 7.120726 CCGTCCCAAAATAAGTATCTCAACTTT 59.879 37.037 0.00 0.00 40.20 2.66
356 440 7.962918 CGTCCCAAAATAAGTATCTCAACTTTG 59.037 37.037 0.00 0.00 40.20 2.77
357 441 8.793592 GTCCCAAAATAAGTATCTCAACTTTGT 58.206 33.333 0.00 0.00 40.20 2.83
373 457 6.688637 AACTTTGTACTAAAGTTGGGACAC 57.311 37.500 23.48 0.00 45.58 3.67
374 458 5.997843 ACTTTGTACTAAAGTTGGGACACT 58.002 37.500 14.04 0.00 39.29 3.55
375 459 6.420638 ACTTTGTACTAAAGTTGGGACACTT 58.579 36.000 14.04 0.00 39.29 3.16
376 460 7.567458 ACTTTGTACTAAAGTTGGGACACTTA 58.433 34.615 14.04 0.00 39.29 2.24
377 461 8.215736 ACTTTGTACTAAAGTTGGGACACTTAT 58.784 33.333 14.04 0.00 39.29 1.73
378 462 8.983702 TTTGTACTAAAGTTGGGACACTTATT 57.016 30.769 0.00 0.00 39.29 1.40
379 463 8.983702 TTGTACTAAAGTTGGGACACTTATTT 57.016 30.769 0.00 0.00 39.29 1.40
380 464 8.983702 TGTACTAAAGTTGGGACACTTATTTT 57.016 30.769 0.00 0.00 39.29 1.82
381 465 8.842280 TGTACTAAAGTTGGGACACTTATTTTG 58.158 33.333 0.00 0.00 39.29 2.44
382 466 7.284919 ACTAAAGTTGGGACACTTATTTTGG 57.715 36.000 0.00 0.00 39.29 3.28
383 467 5.545063 AAAGTTGGGACACTTATTTTGGG 57.455 39.130 0.00 0.00 39.29 4.12
384 468 4.463050 AGTTGGGACACTTATTTTGGGA 57.537 40.909 0.00 0.00 39.29 4.37
385 469 4.149598 AGTTGGGACACTTATTTTGGGAC 58.850 43.478 0.00 0.00 39.29 4.46
386 470 2.785562 TGGGACACTTATTTTGGGACG 58.214 47.619 0.00 0.00 0.00 4.79
387 471 2.089201 GGGACACTTATTTTGGGACGG 58.911 52.381 0.00 0.00 0.00 4.79
388 472 2.290450 GGGACACTTATTTTGGGACGGA 60.290 50.000 0.00 0.00 0.00 4.69
389 473 3.007635 GGACACTTATTTTGGGACGGAG 58.992 50.000 0.00 0.00 0.00 4.63
390 474 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
391 475 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
392 476 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
393 477 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
394 478 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
395 479 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
464 874 3.306019 CCACACTAATTTCCTTTGCCCAC 60.306 47.826 0.00 0.00 0.00 4.61
472 883 0.687920 TCCTTTGCCCACGATGTACA 59.312 50.000 0.00 0.00 0.00 2.90
473 884 1.086696 CCTTTGCCCACGATGTACAG 58.913 55.000 0.33 0.00 0.00 2.74
486 897 4.627467 ACGATGTACAGTCATTTCTCAAGC 59.373 41.667 0.33 0.00 0.00 4.01
494 905 4.518211 CAGTCATTTCTCAAGCCTTTCAGT 59.482 41.667 0.00 0.00 0.00 3.41
559 973 9.823647 CTCTAGATAATACATGGTGTGAGTTTT 57.176 33.333 0.00 0.00 0.00 2.43
560 974 9.817809 TCTAGATAATACATGGTGTGAGTTTTC 57.182 33.333 0.00 0.00 0.00 2.29
562 976 8.498054 AGATAATACATGGTGTGAGTTTTCAG 57.502 34.615 0.00 0.00 32.98 3.02
568 1001 1.604278 GGTGTGAGTTTTCAGTGGCTC 59.396 52.381 0.00 0.00 32.98 4.70
572 1005 2.945668 GTGAGTTTTCAGTGGCTCTTGT 59.054 45.455 0.00 0.00 32.98 3.16
574 1007 2.291741 GAGTTTTCAGTGGCTCTTGTGG 59.708 50.000 0.00 0.00 0.00 4.17
615 1058 4.792521 ATGTATCCTAATGAGAGACCGC 57.207 45.455 0.00 0.00 0.00 5.68
651 1116 8.614994 AATTATAAACTGCGTTGCTATGAAAC 57.385 30.769 0.00 0.00 0.00 2.78
723 1190 5.427157 TGAGCACCTTAACCCTGTATTGATA 59.573 40.000 0.00 0.00 0.00 2.15
779 1265 6.005823 TCTGCTAGCATTAATTATGTGCCAT 58.994 36.000 19.72 5.52 39.62 4.40
803 1292 2.708216 TGTGCTCAAGGAACTGTTGA 57.292 45.000 0.00 0.00 40.86 3.18
1013 1524 0.811616 CGTTCCATGGAGGTAGCAGC 60.812 60.000 15.53 0.00 39.02 5.25
1030 1541 4.460263 AGCAGCAAAATCGGGATTATACA 58.540 39.130 0.00 0.00 0.00 2.29
1033 1544 5.619981 GCAGCAAAATCGGGATTATACATCC 60.620 44.000 0.00 5.74 37.47 3.51
1347 1861 3.743911 CACTTACCTTTGACACGCACATA 59.256 43.478 0.00 0.00 0.00 2.29
1601 2136 3.996150 AATCGATCACAAATGGATGCC 57.004 42.857 0.00 0.00 0.00 4.40
1713 2291 5.240844 ACACTTAGTGCTTTATTGTGGGTTC 59.759 40.000 12.80 0.00 36.98 3.62
1739 2317 3.970610 CACGTTTGAAATGCAGAACTCTG 59.029 43.478 2.17 2.17 46.40 3.35
1803 2382 7.519970 GCACTCGTTTCCTTAAGAAAATGAAGA 60.520 37.037 9.95 0.00 45.93 2.87
1928 2507 6.320418 AGGAAGTTTACTTGGATTTTCGTGTT 59.680 34.615 0.00 0.00 36.11 3.32
1974 2553 1.202268 CGTCGTCTGGATGGAACTACC 60.202 57.143 0.00 0.00 39.54 3.18
2153 2732 1.064825 GGGTTCACCTTCCTGGAAGA 58.935 55.000 32.80 14.44 41.71 2.87
2279 2858 1.456287 GGGCCTTGGTTGTCTGTCT 59.544 57.895 0.84 0.00 0.00 3.41
2550 3129 2.673833 CTCAAGTACGGGAGTGTGAAC 58.326 52.381 8.23 0.00 46.80 3.18
2575 3155 4.441634 GGTGATCTCACTACGGCTACATTT 60.442 45.833 9.98 0.00 45.73 2.32
2646 3226 7.114388 CGATGGTTAAAAGCAAAGTAAGGTTTC 59.886 37.037 0.00 0.00 40.14 2.78
2898 3487 7.015584 ACAAGTCTTTTTGGGAGATTAATTGCT 59.984 33.333 0.00 0.00 32.32 3.91
3377 4074 8.954950 ATAATCTATGTTCAAGAGTCCAGTTG 57.045 34.615 0.00 0.00 0.00 3.16
3428 4133 5.898174 TGCATCATTCTGGCTTTATGAAAG 58.102 37.500 0.00 0.00 41.46 2.62
3561 4268 0.848735 ATATCCACTGCATGTGCCCT 59.151 50.000 9.88 1.74 44.92 5.19
3634 4374 6.147864 TGCAGAATCAACTTAAGTTTGCTT 57.852 33.333 28.71 18.71 37.54 3.91
3671 4433 5.774690 TCAGTAGCCTTGTCCAAAATTTGAT 59.225 36.000 7.37 0.00 0.00 2.57
3676 4438 4.925646 GCCTTGTCCAAAATTTGATCACTC 59.074 41.667 7.37 0.00 0.00 3.51
3678 4440 6.694447 CCTTGTCCAAAATTTGATCACTCAT 58.306 36.000 7.37 0.00 0.00 2.90
3762 4548 7.541091 CCATATAATGCTCAAGTTGATGCAATC 59.459 37.037 24.17 6.37 45.83 2.67
3805 4591 0.587768 CGATGCATGCGATGGCTTTA 59.412 50.000 14.09 0.00 40.82 1.85
3968 4756 5.410355 AGGTGTGCATCAATTATTTTGCT 57.590 34.783 9.91 0.00 36.10 3.91
4005 4811 7.986085 ATTGCTGTTCAAAGTATGTAAGAGT 57.014 32.000 0.00 0.00 38.34 3.24
4007 4813 8.896320 TTGCTGTTCAAAGTATGTAAGAGTAA 57.104 30.769 0.00 0.00 0.00 2.24
4008 4814 8.534333 TGCTGTTCAAAGTATGTAAGAGTAAG 57.466 34.615 0.00 0.00 0.00 2.34
4009 4815 8.364894 TGCTGTTCAAAGTATGTAAGAGTAAGA 58.635 33.333 0.00 0.00 0.00 2.10
4115 4921 1.909302 AGTGGAACCGAATGGACAGAT 59.091 47.619 0.00 0.00 37.80 2.90
4139 4945 2.042259 TGCTGATGCAGAAAGGCGG 61.042 57.895 0.00 0.00 45.31 6.13
4236 5042 5.113446 ACTTGATGATCTTCTGAATGCCT 57.887 39.130 9.75 0.00 0.00 4.75
4292 5098 0.676782 GTACCATGGTTTCAGCGGCT 60.677 55.000 25.38 0.00 0.00 5.52
4315 5121 1.678101 GCCAGGAAAATCGAATGAGGG 59.322 52.381 0.00 0.00 0.00 4.30
4337 5143 1.807142 GACCAAGTGTTGCTAAGCCTC 59.193 52.381 0.00 0.00 0.00 4.70
4339 5145 0.798776 CAAGTGTTGCTAAGCCTCGG 59.201 55.000 0.00 0.00 0.00 4.63
4427 5433 2.415893 CCCAGAATGCGAACCACATTTC 60.416 50.000 0.00 0.00 37.85 2.17
4429 5435 3.057315 CCAGAATGCGAACCACATTTCTT 60.057 43.478 0.00 0.00 37.85 2.52
4430 5436 3.916172 CAGAATGCGAACCACATTTCTTG 59.084 43.478 0.00 0.00 37.85 3.02
4431 5437 3.569701 AGAATGCGAACCACATTTCTTGT 59.430 39.130 0.00 0.00 37.85 3.16
4432 5438 4.037923 AGAATGCGAACCACATTTCTTGTT 59.962 37.500 0.00 0.00 37.85 2.83
4435 5441 3.042887 GCGAACCACATTTCTTGTTGTC 58.957 45.455 0.00 0.00 36.00 3.18
4482 5554 9.574516 ACTTCCTTTATAGTGTGATTTTCTGTT 57.425 29.630 0.00 0.00 0.00 3.16
4488 5560 9.658475 TTTATAGTGTGATTTTCTGTTTGTTCG 57.342 29.630 0.00 0.00 0.00 3.95
4491 5563 4.499040 GTGTGATTTTCTGTTTGTTCGTGG 59.501 41.667 0.00 0.00 0.00 4.94
4511 5608 5.289675 CGTGGATAGACATGTCTCACTTTTC 59.710 44.000 31.09 17.54 40.93 2.29
4525 5622 8.239314 TGTCTCACTTTTCAGAATCATTTATGC 58.761 33.333 0.00 0.00 0.00 3.14
4532 5629 4.188462 TCAGAATCATTTATGCGGTTCGT 58.812 39.130 0.00 0.00 0.00 3.85
4628 5731 7.088589 ACTTTGTACCATGCTATGTCAATTC 57.911 36.000 0.00 0.00 0.00 2.17
4712 5957 7.775120 ACACACTGTTCTTTCATTTTTCTCAT 58.225 30.769 0.00 0.00 0.00 2.90
4713 5958 8.902806 ACACACTGTTCTTTCATTTTTCTCATA 58.097 29.630 0.00 0.00 0.00 2.15
4714 5959 9.903682 CACACTGTTCTTTCATTTTTCTCATAT 57.096 29.630 0.00 0.00 0.00 1.78
4718 5963 9.214953 CTGTTCTTTCATTTTTCTCATATACGC 57.785 33.333 0.00 0.00 0.00 4.42
4719 5964 8.946085 TGTTCTTTCATTTTTCTCATATACGCT 58.054 29.630 0.00 0.00 0.00 5.07
4720 5965 9.774742 GTTCTTTCATTTTTCTCATATACGCTT 57.225 29.630 0.00 0.00 0.00 4.68
4787 6032 6.525578 TTCTTAGCGATGAGTTTAGGAAGA 57.474 37.500 0.00 0.00 0.00 2.87
5007 6252 9.196139 CCAGATAATTAAAATTTGGGACCTACA 57.804 33.333 0.00 0.00 0.00 2.74
5019 6264 2.749621 GGGACCTACAATCACAGCAAAG 59.250 50.000 0.00 0.00 0.00 2.77
5117 6362 1.702401 TGCAAACACAGGGGTATGAGA 59.298 47.619 0.00 0.00 0.00 3.27
5122 6370 5.713025 CAAACACAGGGGTATGAGAATTTG 58.287 41.667 0.00 0.00 0.00 2.32
5123 6371 4.657814 ACACAGGGGTATGAGAATTTGT 57.342 40.909 0.00 0.00 0.00 2.83
5370 9204 2.904697 ATGAAGAGCATGATCTCGCA 57.095 45.000 14.98 15.51 38.12 5.10
5682 9598 4.074259 CTGATTTGTCTGTGGTGGATGAA 58.926 43.478 0.00 0.00 0.00 2.57
5869 9815 9.962809 ACACCATTTTGGAAATGATTTTGATAT 57.037 25.926 13.42 0.00 40.96 1.63
6106 10555 3.578282 TCTCACATGACTAGCCAACTGAA 59.422 43.478 0.00 0.00 0.00 3.02
6136 10592 7.760794 TGCTTGGTGCTCTTTTATGAAAATATG 59.239 33.333 0.00 0.00 43.37 1.78
6152 10608 5.337578 AAATATGTATTGCAAGCCGGTTT 57.662 34.783 4.94 0.00 0.00 3.27
6158 10614 1.323271 TTGCAAGCCGGTTTGGTGAA 61.323 50.000 29.17 0.00 41.21 3.18
6253 10720 7.687941 ATTTCAACCCTATATAGATTTGGCG 57.312 36.000 11.53 0.03 0.00 5.69
6254 10721 6.428083 TTCAACCCTATATAGATTTGGCGA 57.572 37.500 11.53 2.21 0.00 5.54
6255 10722 6.428083 TCAACCCTATATAGATTTGGCGAA 57.572 37.500 11.53 0.00 0.00 4.70
6258 10725 4.225267 ACCCTATATAGATTTGGCGAAGGG 59.775 45.833 11.53 4.39 45.52 3.95
6261 10728 2.938956 ATAGATTTGGCGAAGGGGAG 57.061 50.000 0.00 0.00 0.00 4.30
6262 10729 0.180406 TAGATTTGGCGAAGGGGAGC 59.820 55.000 0.00 0.00 0.00 4.70
6277 10744 3.605749 GAGCCTTGGCGCAGTGGTA 62.606 63.158 10.83 0.00 0.00 3.25
6278 10745 2.671619 GCCTTGGCGCAGTGGTAA 60.672 61.111 10.83 0.00 0.00 2.85
6279 10746 2.265182 GCCTTGGCGCAGTGGTAAA 61.265 57.895 10.83 0.00 0.00 2.01
6280 10747 1.875963 CCTTGGCGCAGTGGTAAAG 59.124 57.895 10.83 0.71 0.00 1.85
6281 10748 1.210155 CTTGGCGCAGTGGTAAAGC 59.790 57.895 10.83 0.00 0.00 3.51
6282 10749 1.228124 TTGGCGCAGTGGTAAAGCT 60.228 52.632 10.83 0.00 0.00 3.74
6283 10750 1.514678 TTGGCGCAGTGGTAAAGCTG 61.515 55.000 10.83 0.00 35.93 4.24
6288 10755 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
6289 10756 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
6290 10757 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
6291 10758 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
6292 10759 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
6293 10760 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
6294 10761 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
6295 10762 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
6296 10763 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
6297 10764 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
6298 10765 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
6299 10766 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
6300 10767 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
6301 10768 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
6302 10769 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
6312 10779 4.617875 CCATGAGGTCACGGGTTC 57.382 61.111 0.00 0.00 0.00 3.62
6313 10780 1.676968 CCATGAGGTCACGGGTTCA 59.323 57.895 0.00 0.00 0.00 3.18
6314 10781 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.00 0.00 0.00 2.69
6315 10782 1.442769 CATGAGGTCACGGGTTCAAG 58.557 55.000 0.00 0.00 0.00 3.02
6316 10783 1.056660 ATGAGGTCACGGGTTCAAGT 58.943 50.000 0.00 0.00 0.00 3.16
6317 10784 0.391597 TGAGGTCACGGGTTCAAGTC 59.608 55.000 0.00 0.00 0.00 3.01
6318 10785 0.320508 GAGGTCACGGGTTCAAGTCC 60.321 60.000 0.00 0.00 0.00 3.85
6319 10786 0.763223 AGGTCACGGGTTCAAGTCCT 60.763 55.000 0.00 0.00 0.00 3.85
6320 10787 0.602905 GGTCACGGGTTCAAGTCCTG 60.603 60.000 0.00 0.00 37.36 3.86
6321 10788 0.602905 GTCACGGGTTCAAGTCCTGG 60.603 60.000 0.00 0.00 35.79 4.45
6322 10789 0.761323 TCACGGGTTCAAGTCCTGGA 60.761 55.000 0.00 0.00 35.79 3.86
6323 10790 0.107831 CACGGGTTCAAGTCCTGGAA 59.892 55.000 0.00 0.00 35.79 3.53
6324 10791 0.841289 ACGGGTTCAAGTCCTGGAAA 59.159 50.000 0.00 0.00 35.79 3.13
6325 10792 1.235724 CGGGTTCAAGTCCTGGAAAC 58.764 55.000 0.00 0.00 0.00 2.78
6326 10793 1.476110 CGGGTTCAAGTCCTGGAAACA 60.476 52.381 0.00 0.00 32.36 2.83
6337 10804 3.025924 TGGAAACAGCCTCTTGCAG 57.974 52.632 0.00 0.00 44.83 4.41
6338 10805 0.473755 TGGAAACAGCCTCTTGCAGA 59.526 50.000 0.00 0.00 44.83 4.26
6339 10806 1.133823 TGGAAACAGCCTCTTGCAGAA 60.134 47.619 0.00 0.00 44.83 3.02
6340 10807 1.956477 GGAAACAGCCTCTTGCAGAAA 59.044 47.619 0.00 0.00 44.83 2.52
6341 10808 2.560105 GGAAACAGCCTCTTGCAGAAAT 59.440 45.455 0.00 0.00 44.83 2.17
6342 10809 3.572584 GAAACAGCCTCTTGCAGAAATG 58.427 45.455 0.00 0.00 44.83 2.32
6343 10810 2.283145 ACAGCCTCTTGCAGAAATGT 57.717 45.000 0.00 0.00 44.83 2.71
6344 10811 3.423539 ACAGCCTCTTGCAGAAATGTA 57.576 42.857 0.00 0.00 44.83 2.29
6345 10812 3.341823 ACAGCCTCTTGCAGAAATGTAG 58.658 45.455 0.00 0.00 44.83 2.74
6346 10813 2.681848 CAGCCTCTTGCAGAAATGTAGG 59.318 50.000 0.00 0.00 44.83 3.18
6347 10814 2.019984 GCCTCTTGCAGAAATGTAGGG 58.980 52.381 0.00 0.00 40.77 3.53
6348 10815 2.356125 GCCTCTTGCAGAAATGTAGGGA 60.356 50.000 0.00 0.00 40.77 4.20
6349 10816 3.873801 GCCTCTTGCAGAAATGTAGGGAA 60.874 47.826 0.00 0.00 40.77 3.97
6350 10817 4.335416 CCTCTTGCAGAAATGTAGGGAAA 58.665 43.478 0.00 0.00 0.00 3.13
6351 10818 4.397417 CCTCTTGCAGAAATGTAGGGAAAG 59.603 45.833 0.00 0.00 0.00 2.62
6352 10819 4.335416 TCTTGCAGAAATGTAGGGAAAGG 58.665 43.478 0.00 0.00 0.00 3.11
6353 10820 2.446435 TGCAGAAATGTAGGGAAAGGC 58.554 47.619 0.00 0.00 0.00 4.35
6354 10821 2.041620 TGCAGAAATGTAGGGAAAGGCT 59.958 45.455 0.00 0.00 0.00 4.58
6355 10822 2.424956 GCAGAAATGTAGGGAAAGGCTG 59.575 50.000 0.00 0.00 0.00 4.85
6356 10823 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
6357 10824 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
6358 10825 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
6359 10826 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
6360 10827 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
6361 10828 0.248289 GTAGGGAAAGGCTGCGTACA 59.752 55.000 0.00 0.00 36.89 2.90
6362 10829 0.978151 TAGGGAAAGGCTGCGTACAA 59.022 50.000 0.00 0.00 0.00 2.41
6363 10830 0.328258 AGGGAAAGGCTGCGTACAAT 59.672 50.000 0.00 0.00 0.00 2.71
6364 10831 1.557832 AGGGAAAGGCTGCGTACAATA 59.442 47.619 0.00 0.00 0.00 1.90
6365 10832 1.940613 GGGAAAGGCTGCGTACAATAG 59.059 52.381 0.00 0.00 0.00 1.73
6366 10833 2.419574 GGGAAAGGCTGCGTACAATAGA 60.420 50.000 0.00 0.00 0.00 1.98
6367 10834 2.608090 GGAAAGGCTGCGTACAATAGAC 59.392 50.000 0.00 0.00 0.00 2.59
6368 10835 2.311124 AAGGCTGCGTACAATAGACC 57.689 50.000 0.00 0.00 0.00 3.85
6369 10836 0.464452 AGGCTGCGTACAATAGACCC 59.536 55.000 0.00 0.00 0.00 4.46
6370 10837 0.177141 GGCTGCGTACAATAGACCCA 59.823 55.000 0.00 0.00 0.00 4.51
6371 10838 1.406341 GGCTGCGTACAATAGACCCAA 60.406 52.381 0.00 0.00 0.00 4.12
6372 10839 2.352388 GCTGCGTACAATAGACCCAAA 58.648 47.619 0.00 0.00 0.00 3.28
6373 10840 2.351726 GCTGCGTACAATAGACCCAAAG 59.648 50.000 0.00 0.00 0.00 2.77
6374 10841 3.596214 CTGCGTACAATAGACCCAAAGT 58.404 45.455 0.00 0.00 0.00 2.66
6375 10842 3.331150 TGCGTACAATAGACCCAAAGTG 58.669 45.455 0.00 0.00 0.00 3.16
6376 10843 2.676342 GCGTACAATAGACCCAAAGTGG 59.324 50.000 0.00 0.00 37.25 4.00
6377 10844 3.867216 GCGTACAATAGACCCAAAGTGGT 60.867 47.826 0.00 0.00 42.79 4.16
6660 11127 2.417339 GCATTCTTCGCATGCATGAT 57.583 45.000 30.64 10.62 45.50 2.45
6789 11256 3.766644 TGGAACATGCTGGAGATCG 57.233 52.632 0.00 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 5.926542 CCATCATTTCATCATTTGGAGCATC 59.073 40.000 0.00 0.00 0.00 3.91
7 8 5.365605 ACCATCATTTCATCATTTGGAGCAT 59.634 36.000 0.00 0.00 0.00 3.79
8 9 4.712829 ACCATCATTTCATCATTTGGAGCA 59.287 37.500 0.00 0.00 0.00 4.26
9 10 5.047847 CACCATCATTTCATCATTTGGAGC 58.952 41.667 0.00 0.00 0.00 4.70
10 11 5.047847 GCACCATCATTTCATCATTTGGAG 58.952 41.667 0.00 0.00 0.00 3.86
11 12 4.712829 AGCACCATCATTTCATCATTTGGA 59.287 37.500 0.00 0.00 0.00 3.53
12 13 5.018539 AGCACCATCATTTCATCATTTGG 57.981 39.130 0.00 0.00 0.00 3.28
13 14 5.748630 CAGAGCACCATCATTTCATCATTTG 59.251 40.000 0.00 0.00 0.00 2.32
14 15 5.681437 GCAGAGCACCATCATTTCATCATTT 60.681 40.000 0.00 0.00 0.00 2.32
15 16 4.202121 GCAGAGCACCATCATTTCATCATT 60.202 41.667 0.00 0.00 0.00 2.57
16 17 3.318275 GCAGAGCACCATCATTTCATCAT 59.682 43.478 0.00 0.00 0.00 2.45
17 18 2.686405 GCAGAGCACCATCATTTCATCA 59.314 45.455 0.00 0.00 0.00 3.07
18 19 2.950309 AGCAGAGCACCATCATTTCATC 59.050 45.455 0.00 0.00 0.00 2.92
19 20 2.950309 GAGCAGAGCACCATCATTTCAT 59.050 45.455 0.00 0.00 0.00 2.57
20 21 2.026542 AGAGCAGAGCACCATCATTTCA 60.027 45.455 0.00 0.00 0.00 2.69
21 22 2.355132 CAGAGCAGAGCACCATCATTTC 59.645 50.000 0.00 0.00 0.00 2.17
22 23 2.290768 ACAGAGCAGAGCACCATCATTT 60.291 45.455 0.00 0.00 0.00 2.32
23 24 1.281287 ACAGAGCAGAGCACCATCATT 59.719 47.619 0.00 0.00 0.00 2.57
24 25 0.910338 ACAGAGCAGAGCACCATCAT 59.090 50.000 0.00 0.00 0.00 2.45
30 31 0.602562 ACAGAGACAGAGCAGAGCAC 59.397 55.000 0.00 0.00 0.00 4.40
43 44 1.275010 ACACACACACACACACAGAGA 59.725 47.619 0.00 0.00 0.00 3.10
50 51 0.096281 CGGACAACACACACACACAC 59.904 55.000 0.00 0.00 0.00 3.82
77 78 2.643304 GACAGAAACCCCCTCTAAACCT 59.357 50.000 0.00 0.00 0.00 3.50
135 136 2.997986 CAAAGGGCACTGAATTTGCATC 59.002 45.455 0.00 0.00 42.12 3.91
254 308 4.932146 ACACCAACAGCAACTGTAATTTC 58.068 39.130 0.00 0.00 44.62 2.17
255 309 4.400884 TGACACCAACAGCAACTGTAATTT 59.599 37.500 0.00 0.00 44.62 1.82
256 310 3.951037 TGACACCAACAGCAACTGTAATT 59.049 39.130 0.00 0.00 44.62 1.40
257 311 3.550820 TGACACCAACAGCAACTGTAAT 58.449 40.909 0.00 0.00 44.62 1.89
276 341 7.573710 AGTTAGCCCAAATCAGTAACATATGA 58.426 34.615 10.38 0.00 0.00 2.15
324 408 2.271777 ACTTATTTTGGGACGGAGGGA 58.728 47.619 0.00 0.00 0.00 4.20
325 409 2.801077 ACTTATTTTGGGACGGAGGG 57.199 50.000 0.00 0.00 0.00 4.30
326 410 5.163343 TGAGATACTTATTTTGGGACGGAGG 60.163 44.000 0.00 0.00 0.00 4.30
327 411 5.914033 TGAGATACTTATTTTGGGACGGAG 58.086 41.667 0.00 0.00 0.00 4.63
328 412 5.943349 TGAGATACTTATTTTGGGACGGA 57.057 39.130 0.00 0.00 0.00 4.69
329 413 6.113411 AGTTGAGATACTTATTTTGGGACGG 58.887 40.000 0.00 0.00 0.00 4.79
330 414 7.611213 AAGTTGAGATACTTATTTTGGGACG 57.389 36.000 0.00 0.00 36.62 4.79
332 416 8.934023 ACAAAGTTGAGATACTTATTTTGGGA 57.066 30.769 0.00 0.00 37.37 4.37
351 435 5.997843 AGTGTCCCAACTTTAGTACAAAGT 58.002 37.500 14.04 14.04 41.82 2.66
352 436 6.937436 AAGTGTCCCAACTTTAGTACAAAG 57.063 37.500 13.08 13.08 37.05 2.77
353 437 8.983702 AATAAGTGTCCCAACTTTAGTACAAA 57.016 30.769 0.00 0.00 40.77 2.83
354 438 8.983702 AAATAAGTGTCCCAACTTTAGTACAA 57.016 30.769 0.00 0.00 40.77 2.41
355 439 8.842280 CAAAATAAGTGTCCCAACTTTAGTACA 58.158 33.333 0.00 0.00 40.77 2.90
356 440 8.294577 CCAAAATAAGTGTCCCAACTTTAGTAC 58.705 37.037 0.00 0.00 40.77 2.73
357 441 7.449086 CCCAAAATAAGTGTCCCAACTTTAGTA 59.551 37.037 0.00 0.00 40.77 1.82
358 442 6.266786 CCCAAAATAAGTGTCCCAACTTTAGT 59.733 38.462 0.00 0.00 40.77 2.24
359 443 6.492087 TCCCAAAATAAGTGTCCCAACTTTAG 59.508 38.462 0.00 0.00 40.77 1.85
360 444 6.265876 GTCCCAAAATAAGTGTCCCAACTTTA 59.734 38.462 0.00 0.00 40.77 1.85
361 445 5.069914 GTCCCAAAATAAGTGTCCCAACTTT 59.930 40.000 0.00 0.00 40.77 2.66
362 446 4.587262 GTCCCAAAATAAGTGTCCCAACTT 59.413 41.667 0.00 0.00 42.89 2.66
363 447 4.149598 GTCCCAAAATAAGTGTCCCAACT 58.850 43.478 0.00 0.00 0.00 3.16
364 448 3.057806 CGTCCCAAAATAAGTGTCCCAAC 60.058 47.826 0.00 0.00 0.00 3.77
365 449 3.150767 CGTCCCAAAATAAGTGTCCCAA 58.849 45.455 0.00 0.00 0.00 4.12
366 450 2.553466 CCGTCCCAAAATAAGTGTCCCA 60.553 50.000 0.00 0.00 0.00 4.37
367 451 2.089201 CCGTCCCAAAATAAGTGTCCC 58.911 52.381 0.00 0.00 0.00 4.46
368 452 3.007635 CTCCGTCCCAAAATAAGTGTCC 58.992 50.000 0.00 0.00 0.00 4.02
369 453 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
370 454 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
371 455 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
372 456 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
373 457 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
374 458 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
375 459 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
376 460 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
377 461 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
378 462 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
379 463 2.090943 ACATATACTCCCTCCGTCCCAA 60.091 50.000 0.00 0.00 0.00 4.12
380 464 1.502039 ACATATACTCCCTCCGTCCCA 59.498 52.381 0.00 0.00 0.00 4.37
381 465 2.305858 ACATATACTCCCTCCGTCCC 57.694 55.000 0.00 0.00 0.00 4.46
382 466 4.217983 CAGTAACATATACTCCCTCCGTCC 59.782 50.000 0.00 0.00 0.00 4.79
383 467 5.068636 TCAGTAACATATACTCCCTCCGTC 58.931 45.833 0.00 0.00 0.00 4.79
384 468 5.057843 TCAGTAACATATACTCCCTCCGT 57.942 43.478 0.00 0.00 0.00 4.69
385 469 6.208797 TCAATCAGTAACATATACTCCCTCCG 59.791 42.308 0.00 0.00 0.00 4.63
386 470 7.233757 ACTCAATCAGTAACATATACTCCCTCC 59.766 40.741 0.00 0.00 31.37 4.30
387 471 8.085296 CACTCAATCAGTAACATATACTCCCTC 58.915 40.741 0.00 0.00 32.21 4.30
388 472 7.015682 CCACTCAATCAGTAACATATACTCCCT 59.984 40.741 0.00 0.00 32.21 4.20
389 473 7.015292 TCCACTCAATCAGTAACATATACTCCC 59.985 40.741 0.00 0.00 32.21 4.30
390 474 7.952671 TCCACTCAATCAGTAACATATACTCC 58.047 38.462 0.00 0.00 32.21 3.85
391 475 7.596995 GCTCCACTCAATCAGTAACATATACTC 59.403 40.741 0.00 0.00 32.21 2.59
392 476 7.288852 AGCTCCACTCAATCAGTAACATATACT 59.711 37.037 0.00 0.00 32.21 2.12
393 477 7.383572 CAGCTCCACTCAATCAGTAACATATAC 59.616 40.741 0.00 0.00 32.21 1.47
394 478 7.436933 CAGCTCCACTCAATCAGTAACATATA 58.563 38.462 0.00 0.00 32.21 0.86
395 479 6.286758 CAGCTCCACTCAATCAGTAACATAT 58.713 40.000 0.00 0.00 32.21 1.78
464 874 4.033358 GGCTTGAGAAATGACTGTACATCG 59.967 45.833 0.00 0.00 0.00 3.84
472 883 4.723309 ACTGAAAGGCTTGAGAAATGACT 58.277 39.130 0.00 0.00 39.30 3.41
473 884 5.123027 CCTACTGAAAGGCTTGAGAAATGAC 59.877 44.000 0.00 0.00 39.30 3.06
494 905 2.224378 GGCAAGATGATGCTACAGCCTA 60.224 50.000 0.00 0.00 45.68 3.93
559 973 0.325933 CATCCCACAAGAGCCACTGA 59.674 55.000 0.00 0.00 0.00 3.41
560 974 0.325933 TCATCCCACAAGAGCCACTG 59.674 55.000 0.00 0.00 0.00 3.66
562 976 2.486191 CCTATCATCCCACAAGAGCCAC 60.486 54.545 0.00 0.00 0.00 5.01
568 1001 1.134401 ACACGCCTATCATCCCACAAG 60.134 52.381 0.00 0.00 0.00 3.16
572 1005 2.394632 AGTTACACGCCTATCATCCCA 58.605 47.619 0.00 0.00 0.00 4.37
574 1007 5.539048 ACATAAGTTACACGCCTATCATCC 58.461 41.667 0.00 0.00 0.00 3.51
613 1056 3.666883 TTATAATTTCTGCCACACGCG 57.333 42.857 3.53 3.53 42.08 6.01
615 1058 4.793216 GCAGTTTATAATTTCTGCCACACG 59.207 41.667 18.63 0.00 44.84 4.49
639 1104 8.344831 TGTAGATGCAATATGTTTCATAGCAAC 58.655 33.333 0.00 5.85 33.91 4.17
651 1116 7.177498 TCGCTTAAACTGTAGATGCAATATG 57.823 36.000 0.00 0.00 0.00 1.78
672 1137 3.131396 CAAGGAGGTTACCATACATCGC 58.869 50.000 3.51 0.00 29.93 4.58
723 1190 6.769512 TCTTATACTGGAAGAACAAGCAAGT 58.230 36.000 0.00 0.00 37.43 3.16
1013 1524 6.237901 TCCAGGATGTATAATCCCGATTTTG 58.762 40.000 0.69 0.00 38.98 2.44
1030 1541 2.291800 CCCAAAAGTCCACATCCAGGAT 60.292 50.000 0.00 0.00 37.52 3.24
1033 1544 2.584835 TCCCAAAAGTCCACATCCAG 57.415 50.000 0.00 0.00 0.00 3.86
1530 2065 0.037975 GAAGCCAAACAGCCACCATG 60.038 55.000 0.00 0.00 0.00 3.66
1535 2070 1.408702 GTGAAAGAAGCCAAACAGCCA 59.591 47.619 0.00 0.00 0.00 4.75
1601 2136 4.876679 ACAGCTGAGATGACAGATTCAATG 59.123 41.667 23.35 0.00 37.92 2.82
1692 2270 5.106157 CCAGAACCCACAATAAAGCACTAAG 60.106 44.000 0.00 0.00 0.00 2.18
1697 2275 1.892474 GCCAGAACCCACAATAAAGCA 59.108 47.619 0.00 0.00 0.00 3.91
1713 2291 1.001487 TCTGCATTTCAAACGTGCCAG 60.001 47.619 0.00 0.00 38.06 4.85
1739 2317 3.059352 ACATTAGTGGGAGCACAAGTC 57.941 47.619 0.00 0.00 0.00 3.01
1845 2424 5.569355 TCCAAACAGCAAGATATCTCCAAA 58.431 37.500 5.51 0.00 0.00 3.28
1928 2507 1.825090 AGCATTCCGCAAGTTCATCA 58.175 45.000 0.00 0.00 46.13 3.07
2011 2590 6.345298 TCAAGAAGCATATCATACCGTGAAA 58.655 36.000 0.00 0.00 40.97 2.69
2121 2700 4.142038 AGGTGAACCCACAAACTCATTAC 58.858 43.478 0.00 0.00 44.93 1.89
2279 2858 9.090692 GACTTTACACAAACAGAGTTTACAGTA 57.909 33.333 0.00 0.00 0.00 2.74
2646 3226 4.451629 ACAGTATAAAGAGGGTGACACG 57.548 45.455 0.00 0.00 0.00 4.49
2757 3346 7.472334 ACAGAGAAGATTTGGCATTTACATT 57.528 32.000 0.00 0.00 0.00 2.71
2758 3347 8.627403 CATACAGAGAAGATTTGGCATTTACAT 58.373 33.333 0.00 0.00 0.00 2.29
2765 3354 4.943705 GGAACATACAGAGAAGATTTGGCA 59.056 41.667 0.00 0.00 0.00 4.92
2770 3359 6.231211 ACAAACGGAACATACAGAGAAGATT 58.769 36.000 0.00 0.00 0.00 2.40
2898 3487 8.994429 TCAGCAAATGTTTTTCAACTTTTAGA 57.006 26.923 0.00 0.00 37.88 2.10
3283 3905 6.533730 TGCAAAGATCCCATGTTATACTAGG 58.466 40.000 0.00 0.00 0.00 3.02
3377 4074 8.669243 TCATGATCACGAGATACACATATAGAC 58.331 37.037 0.00 0.00 33.72 2.59
3428 4133 2.109425 ACAGGGCGGTAGAATTGAAC 57.891 50.000 0.00 0.00 0.00 3.18
3644 4384 6.670695 AATTTTGGACAAGGCTACTGAATT 57.329 33.333 0.00 0.00 0.00 2.17
3645 4385 6.267471 TCAAATTTTGGACAAGGCTACTGAAT 59.733 34.615 9.18 0.00 0.00 2.57
3795 4581 0.029300 CCCGCACATTAAAGCCATCG 59.971 55.000 0.00 0.00 0.00 3.84
3805 4591 0.038166 ATGGACTTCACCCGCACATT 59.962 50.000 0.00 0.00 0.00 2.71
3961 4747 5.469760 GCAATAAAACAAGGGACAGCAAAAT 59.530 36.000 0.00 0.00 0.00 1.82
3968 4756 4.646945 TGAACAGCAATAAAACAAGGGACA 59.353 37.500 0.00 0.00 0.00 4.02
4046 4852 0.819259 TCCAAAGACAGTGCCTGCAC 60.819 55.000 14.25 14.25 46.50 4.57
4100 4906 3.703001 ACAAGATCTGTCCATTCGGTT 57.297 42.857 0.00 0.00 29.87 4.44
4136 4942 1.786579 GCACTGAAAACACATTTCCGC 59.213 47.619 0.00 0.00 45.67 5.54
4139 4945 4.045636 AGTGGCACTGAAAACACATTTC 57.954 40.909 21.37 0.00 46.30 2.17
4236 5042 6.007076 TGGTATTGCTGAAAACCACTGAATA 58.993 36.000 0.00 0.00 37.09 1.75
4292 5098 3.273434 CTCATTCGATTTTCCTGGCTCA 58.727 45.455 0.00 0.00 0.00 4.26
4315 5121 0.881796 GCTTAGCAACACTTGGTCCC 59.118 55.000 0.00 0.00 42.20 4.46
4337 5143 0.596082 CCAACTGGCTAAAACCACCG 59.404 55.000 0.00 0.00 35.33 4.94
4482 5554 4.219725 TGAGACATGTCTATCCACGAACAA 59.780 41.667 27.95 1.78 40.61 2.83
4488 5560 6.166279 TGAAAAGTGAGACATGTCTATCCAC 58.834 40.000 27.95 27.34 40.61 4.02
4491 5563 8.715191 ATTCTGAAAAGTGAGACATGTCTATC 57.285 34.615 27.95 21.54 40.61 2.08
4511 5608 4.536364 ACGAACCGCATAAATGATTCTG 57.464 40.909 0.00 0.00 0.00 3.02
4525 5622 1.986378 CTAGCAGAGACAAACGAACCG 59.014 52.381 0.00 0.00 0.00 4.44
4532 5629 2.634940 AGAGCAACCTAGCAGAGACAAA 59.365 45.455 0.00 0.00 36.85 2.83
4712 5957 4.178540 CGGAACCTGAGAAAAAGCGTATA 58.821 43.478 0.00 0.00 0.00 1.47
4713 5958 3.000727 CGGAACCTGAGAAAAAGCGTAT 58.999 45.455 0.00 0.00 0.00 3.06
4714 5959 2.224113 ACGGAACCTGAGAAAAAGCGTA 60.224 45.455 0.00 0.00 0.00 4.42
4715 5960 1.226746 CGGAACCTGAGAAAAAGCGT 58.773 50.000 0.00 0.00 0.00 5.07
4716 5961 1.226746 ACGGAACCTGAGAAAAAGCG 58.773 50.000 0.00 0.00 0.00 4.68
4717 5962 3.710326 AAACGGAACCTGAGAAAAAGC 57.290 42.857 0.00 0.00 0.00 3.51
4787 6032 6.153680 TGTGGTGATTTTAGTTTGGTGAAAGT 59.846 34.615 0.00 0.00 0.00 2.66
4871 6116 6.553852 ACACCAGGTATATCGAGGTTCTTAAT 59.446 38.462 0.00 0.00 0.00 1.40
5019 6264 2.182014 GTTGAACCGTTCTTGCAACAC 58.818 47.619 12.43 0.00 38.83 3.32
5101 6346 4.998051 ACAAATTCTCATACCCCTGTGTT 58.002 39.130 0.00 0.00 0.00 3.32
5369 9203 7.916914 TTCTCAATGGCATATGATGTATCTG 57.083 36.000 6.97 0.00 0.00 2.90
5370 9204 9.175312 GAATTCTCAATGGCATATGATGTATCT 57.825 33.333 6.97 0.00 0.00 1.98
5708 9624 5.946377 ACTTGTTTCACAGAACTTTCTCCTT 59.054 36.000 0.00 0.00 34.74 3.36
5869 9815 8.826710 CGCATTTCTGTCCACTTTAAATATCTA 58.173 33.333 0.00 0.00 0.00 1.98
5872 9818 7.250569 CACGCATTTCTGTCCACTTTAAATAT 58.749 34.615 0.00 0.00 0.00 1.28
5929 9946 4.848357 AGGTTAGCAATACAGCAGAACAT 58.152 39.130 0.00 0.00 35.53 2.71
6136 10592 0.601057 ACCAAACCGGCTTGCAATAC 59.399 50.000 12.25 0.00 39.03 1.89
6261 10728 2.200170 CTTTACCACTGCGCCAAGGC 62.200 60.000 4.18 0.00 37.85 4.35
6262 10729 1.875963 CTTTACCACTGCGCCAAGG 59.124 57.895 4.18 6.21 0.00 3.61
6263 10730 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61
6264 10731 1.228124 AGCTTTACCACTGCGCCAA 60.228 52.632 4.18 0.00 0.00 4.52
6266 10733 2.870372 CAGCTTTACCACTGCGCC 59.130 61.111 4.18 0.00 0.00 6.53
6271 10738 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
6272 10739 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
6273 10740 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
6274 10741 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
6275 10742 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
6276 10743 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
6277 10744 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
6278 10745 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
6279 10746 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
6280 10747 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
6281 10748 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
6282 10749 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
6283 10750 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
6284 10751 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
6285 10752 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
6296 10763 1.270839 ACTTGAACCCGTGACCTCATG 60.271 52.381 0.00 0.00 0.00 3.07
6297 10764 1.002087 GACTTGAACCCGTGACCTCAT 59.998 52.381 0.00 0.00 0.00 2.90
6298 10765 0.391597 GACTTGAACCCGTGACCTCA 59.608 55.000 0.00 0.00 0.00 3.86
6299 10766 0.320508 GGACTTGAACCCGTGACCTC 60.321 60.000 0.00 0.00 0.00 3.85
6300 10767 0.763223 AGGACTTGAACCCGTGACCT 60.763 55.000 0.00 0.00 0.00 3.85
6301 10768 0.602905 CAGGACTTGAACCCGTGACC 60.603 60.000 0.00 0.00 0.00 4.02
6302 10769 0.602905 CCAGGACTTGAACCCGTGAC 60.603 60.000 0.00 0.00 0.00 3.67
6303 10770 0.761323 TCCAGGACTTGAACCCGTGA 60.761 55.000 0.00 0.00 0.00 4.35
6304 10771 0.107831 TTCCAGGACTTGAACCCGTG 59.892 55.000 0.00 0.00 0.00 4.94
6305 10772 0.841289 TTTCCAGGACTTGAACCCGT 59.159 50.000 0.00 0.00 0.00 5.28
6306 10773 1.235724 GTTTCCAGGACTTGAACCCG 58.764 55.000 0.00 0.00 0.00 5.28
6307 10774 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
6308 10775 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
6309 10776 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
6310 10777 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
6311 10778 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
6312 10779 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
6313 10780 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
6314 10781 1.072965 CAAGAGGCTGTTTCCAGGACT 59.927 52.381 0.00 0.00 39.22 3.85
6315 10782 1.528129 CAAGAGGCTGTTTCCAGGAC 58.472 55.000 0.00 0.00 39.22 3.85
6316 10783 0.250901 GCAAGAGGCTGTTTCCAGGA 60.251 55.000 0.00 0.00 39.22 3.86
6317 10784 0.538057 TGCAAGAGGCTGTTTCCAGG 60.538 55.000 0.00 0.00 45.15 4.45
6318 10785 0.879765 CTGCAAGAGGCTGTTTCCAG 59.120 55.000 0.00 0.00 45.15 3.86
6319 10786 0.473755 TCTGCAAGAGGCTGTTTCCA 59.526 50.000 0.00 0.00 38.67 3.53
6320 10787 3.329300 TCTGCAAGAGGCTGTTTCC 57.671 52.632 0.00 0.00 38.67 3.13
6330 10797 4.335416 CCTTTCCCTACATTTCTGCAAGA 58.665 43.478 0.00 0.00 44.68 3.02
6331 10798 3.119352 GCCTTTCCCTACATTTCTGCAAG 60.119 47.826 0.00 0.00 0.00 4.01
6332 10799 2.825532 GCCTTTCCCTACATTTCTGCAA 59.174 45.455 0.00 0.00 0.00 4.08
6333 10800 2.041620 AGCCTTTCCCTACATTTCTGCA 59.958 45.455 0.00 0.00 0.00 4.41
6334 10801 2.424956 CAGCCTTTCCCTACATTTCTGC 59.575 50.000 0.00 0.00 0.00 4.26
6335 10802 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
6336 10803 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
6337 10804 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
6338 10805 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
6339 10806 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
6340 10807 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
6341 10808 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
6342 10809 0.248289 TGTACGCAGCCTTTCCCTAC 59.752 55.000 0.00 0.00 0.00 3.18
6343 10810 0.978151 TTGTACGCAGCCTTTCCCTA 59.022 50.000 0.00 0.00 0.00 3.53
6344 10811 0.328258 ATTGTACGCAGCCTTTCCCT 59.672 50.000 0.00 0.00 0.00 4.20
6345 10812 1.940613 CTATTGTACGCAGCCTTTCCC 59.059 52.381 0.00 0.00 0.00 3.97
6346 10813 2.608090 GTCTATTGTACGCAGCCTTTCC 59.392 50.000 0.00 0.00 0.00 3.13
6347 10814 2.608090 GGTCTATTGTACGCAGCCTTTC 59.392 50.000 0.00 0.00 0.00 2.62
6348 10815 2.629051 GGTCTATTGTACGCAGCCTTT 58.371 47.619 0.00 0.00 0.00 3.11
6349 10816 1.134491 GGGTCTATTGTACGCAGCCTT 60.134 52.381 0.00 0.00 0.00 4.35
6350 10817 0.464452 GGGTCTATTGTACGCAGCCT 59.536 55.000 0.00 0.00 0.00 4.58
6351 10818 0.177141 TGGGTCTATTGTACGCAGCC 59.823 55.000 0.00 0.00 35.18 4.85
6352 10819 2.018542 TTGGGTCTATTGTACGCAGC 57.981 50.000 0.00 0.00 40.36 5.25
6353 10820 3.370978 CACTTTGGGTCTATTGTACGCAG 59.629 47.826 0.00 0.00 40.36 5.18
6354 10821 3.331150 CACTTTGGGTCTATTGTACGCA 58.669 45.455 0.00 0.00 37.94 5.24
6355 10822 2.676342 CCACTTTGGGTCTATTGTACGC 59.324 50.000 0.00 0.00 32.67 4.42
6356 10823 3.934068 ACCACTTTGGGTCTATTGTACG 58.066 45.455 0.00 0.00 43.37 3.67
6660 11127 4.560739 ACTCTTCCAGGTCATCCATGATA 58.439 43.478 0.00 0.00 39.30 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.