Multiple sequence alignment - TraesCS2B01G462300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G462300 chr2B 100.000 3995 0 0 823 4817 655984525 655988519 0.000000e+00 7378.0
1 TraesCS2B01G462300 chr2B 100.000 458 0 0 1 458 655983703 655984160 0.000000e+00 846.0
2 TraesCS2B01G462300 chr2B 84.773 440 50 11 15 449 386160902 386161329 4.460000e-115 425.0
3 TraesCS2B01G462300 chr2B 82.628 449 53 10 1 427 634207093 634206648 1.640000e-99 374.0
4 TraesCS2B01G462300 chr5A 92.120 2906 113 33 860 3712 504566840 504569682 0.000000e+00 3991.0
5 TraesCS2B01G462300 chr5A 89.013 1520 77 26 1318 2756 504569699 504571209 0.000000e+00 1799.0
6 TraesCS2B01G462300 chr5A 86.546 1717 125 27 2765 4443 504572620 504574268 0.000000e+00 1794.0
7 TraesCS2B01G462300 chr5A 92.295 623 40 7 2087 2704 504571702 504572321 0.000000e+00 878.0
8 TraesCS2B01G462300 chr5A 85.406 788 72 20 2754 3527 504571426 504572184 0.000000e+00 778.0
9 TraesCS2B01G462300 chr5A 84.886 483 47 10 1 458 591742024 591741543 9.440000e-127 464.0
10 TraesCS2B01G462300 chr5A 94.093 237 14 0 4581 4817 504574557 504574793 1.270000e-95 361.0
11 TraesCS2B01G462300 chr2A 87.895 2974 181 59 1768 4675 691843581 691846441 0.000000e+00 3332.0
12 TraesCS2B01G462300 chr2A 88.902 847 56 9 964 1778 691841436 691842276 0.000000e+00 1009.0
13 TraesCS2B01G462300 chr2A 84.699 366 42 7 3127 3480 691760852 691761215 2.130000e-93 353.0
14 TraesCS2B01G462300 chr2A 92.381 105 7 1 4714 4817 691846429 691846533 1.080000e-31 148.0
15 TraesCS2B01G462300 chr2A 92.727 55 4 0 1983 2037 691758908 691758962 4.000000e-11 80.5
16 TraesCS2B01G462300 chr2D 90.146 1573 100 19 2195 3726 549014601 549016159 0.000000e+00 1995.0
17 TraesCS2B01G462300 chr2D 94.830 1238 27 7 2478 3712 549009911 549011114 0.000000e+00 1897.0
18 TraesCS2B01G462300 chr2D 94.830 1238 27 7 2478 3712 549012353 549013556 0.000000e+00 1897.0
19 TraesCS2B01G462300 chr2D 92.301 1234 62 8 1318 2528 549011131 549012354 0.000000e+00 1722.0
20 TraesCS2B01G462300 chr2D 92.220 1234 63 8 1318 2528 549008689 549009912 0.000000e+00 1716.0
21 TraesCS2B01G462300 chr2D 90.810 1197 64 15 823 1979 550224025 550225215 0.000000e+00 1559.0
22 TraesCS2B01G462300 chr2D 88.655 1190 77 17 823 1957 549725081 549726267 0.000000e+00 1397.0
23 TraesCS2B01G462300 chr2D 92.260 969 49 10 2012 2959 550225216 550226179 0.000000e+00 1351.0
24 TraesCS2B01G462300 chr2D 91.856 970 51 11 2012 2959 549726684 549727647 0.000000e+00 1328.0
25 TraesCS2B01G462300 chr2D 90.562 837 57 7 2869 3690 549727648 549728477 0.000000e+00 1088.0
26 TraesCS2B01G462300 chr2D 90.323 837 57 8 2869 3690 550226180 550227007 0.000000e+00 1075.0
27 TraesCS2B01G462300 chr2D 92.532 616 33 7 1690 2299 549013994 549014602 0.000000e+00 870.0
28 TraesCS2B01G462300 chr2D 89.408 642 52 11 3687 4323 550227302 550227932 0.000000e+00 795.0
29 TraesCS2B01G462300 chr2D 89.045 639 54 11 3689 4323 549728773 549729399 0.000000e+00 778.0
30 TraesCS2B01G462300 chr2D 89.195 435 23 13 1558 1979 549726260 549726683 5.520000e-144 521.0
31 TraesCS2B01G462300 chr2D 82.915 597 66 20 2957 3520 548747872 548748465 5.560000e-139 505.0
32 TraesCS2B01G462300 chr2D 91.471 340 23 2 1318 1651 549013573 549013912 3.400000e-126 462.0
33 TraesCS2B01G462300 chr2D 84.979 466 26 11 3747 4204 549016235 549016664 2.660000e-117 433.0
34 TraesCS2B01G462300 chr2D 90.741 270 19 4 4316 4579 549019311 549019580 5.930000e-94 355.0
35 TraesCS2B01G462300 chr2D 93.671 237 14 1 4581 4817 549019621 549019856 2.130000e-93 353.0
36 TraesCS2B01G462300 chr2D 91.085 258 14 3 3457 3712 549008422 549008672 1.660000e-89 340.0
37 TraesCS2B01G462300 chr2D 95.495 111 5 0 4465 4575 549729429 549729539 1.380000e-40 178.0
38 TraesCS2B01G462300 chr2D 95.495 111 5 0 4465 4575 550227962 550228072 1.380000e-40 178.0
39 TraesCS2B01G462300 chr2D 95.960 99 4 0 4719 4817 549729645 549729743 1.390000e-35 161.0
40 TraesCS2B01G462300 chr2D 95.960 99 4 0 4719 4817 550228178 550228276 1.390000e-35 161.0
41 TraesCS2B01G462300 chr2D 87.156 109 12 2 3535 3643 550225826 550225932 6.550000e-24 122.0
42 TraesCS2B01G462300 chr2D 87.156 109 11 3 3535 3643 549015029 549015134 2.350000e-23 121.0
43 TraesCS2B01G462300 chr7D 85.146 478 44 8 1 453 182828207 182828682 9.440000e-127 464.0
44 TraesCS2B01G462300 chr7D 91.573 178 12 3 3791 3966 548771932 548772108 4.820000e-60 243.0
45 TraesCS2B01G462300 chr7D 91.176 68 6 0 55 122 57799572 57799505 5.130000e-15 93.5
46 TraesCS2B01G462300 chr5B 84.735 452 48 13 15 457 631806093 631805654 2.660000e-117 433.0
47 TraesCS2B01G462300 chr1A 85.315 429 46 11 15 438 547891245 547891661 1.240000e-115 427.0
48 TraesCS2B01G462300 chr3B 84.354 441 52 11 22 457 72231168 72231596 2.680000e-112 416.0
49 TraesCS2B01G462300 chr4A 83.964 449 55 11 14 457 527284517 527284953 9.650000e-112 414.0
50 TraesCS2B01G462300 chr6A 82.008 478 59 15 1 457 362072567 362073038 9.780000e-102 381.0
51 TraesCS2B01G462300 chr7B 92.135 89 5 2 3795 3881 592343633 592343721 1.820000e-24 124.0
52 TraesCS2B01G462300 chr7A 92.045 88 5 2 3796 3881 632546686 632546773 6.550000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G462300 chr2B 655983703 655988519 4816 False 4112.000000 7378 100.000000 1 4817 2 chr2B.!!$F2 4816
1 TraesCS2B01G462300 chr5A 504566840 504574793 7953 False 1600.166667 3991 89.912167 860 4817 6 chr5A.!!$F1 3957
2 TraesCS2B01G462300 chr2A 691841436 691846533 5097 False 1496.333333 3332 89.726000 964 4817 3 chr2A.!!$F2 3853
3 TraesCS2B01G462300 chr2A 691758908 691761215 2307 False 216.750000 353 88.713000 1983 3480 2 chr2A.!!$F1 1497
4 TraesCS2B01G462300 chr2D 549008422 549019856 11434 False 1013.416667 1995 91.330167 1318 4817 12 chr2D.!!$F2 3499
5 TraesCS2B01G462300 chr2D 549725081 549729743 4662 False 778.714286 1397 91.538286 823 4817 7 chr2D.!!$F3 3994
6 TraesCS2B01G462300 chr2D 550224025 550228276 4251 False 748.714286 1559 91.630286 823 4817 7 chr2D.!!$F4 3994
7 TraesCS2B01G462300 chr2D 548747872 548748465 593 False 505.000000 505 82.915000 2957 3520 1 chr2D.!!$F1 563

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
425 426 0.036875 CAGGGAAATAGCGGGGATCC 59.963 60.0 1.92 1.92 0.00 3.36 F
447 448 0.039035 CCGGGATCCCTTGAAACCAA 59.961 55.0 28.42 0.00 0.00 3.67 F
1561 2962 0.178897 TGGAGTTCCCCGAACCCTTA 60.179 55.0 0.98 0.00 42.85 2.69 F
2695 10879 0.107945 GCTCTGGCTTCTGGTTCGAT 60.108 55.0 0.00 0.00 35.22 3.59 F
3070 12757 0.235665 CGCAGCGAAACAATGTGACT 59.764 50.0 9.98 0.00 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2319 10471 0.753262 GGCTCCGAGGCAGATAGAAA 59.247 55.000 16.76 0.00 40.97 2.52 R
2430 10606 3.493350 GCTCTCAAGTTCTTGGTGTCTCA 60.493 47.826 11.82 0.00 0.00 3.27 R
3051 12738 0.235665 AGTCACATTGTTTCGCTGCG 59.764 50.000 17.25 17.25 0.00 5.18 R
3581 15007 0.029681 ACATCTGGGCTCCCACCTAT 60.030 55.000 2.93 0.00 41.89 2.57 R
4205 16000 0.038892 AAGCGAAACTGCATTGCTGG 60.039 50.000 18.21 9.87 35.77 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.972198 TGGTCGAAGTAGGTGCCTG 59.028 57.895 0.12 0.00 0.00 4.85
19 20 1.448013 GGTCGAAGTAGGTGCCTGC 60.448 63.158 0.12 0.00 0.00 4.85
20 21 1.448013 GTCGAAGTAGGTGCCTGCC 60.448 63.158 0.12 0.00 0.00 4.85
23 24 4.410400 AAGTAGGTGCCTGCCGCC 62.410 66.667 0.12 0.00 44.77 6.13
42 43 4.873810 TCGCCATTGCCGGATGGG 62.874 66.667 20.65 12.35 45.47 4.00
43 44 4.873810 CGCCATTGCCGGATGGGA 62.874 66.667 20.65 0.00 45.47 4.37
44 45 3.219198 GCCATTGCCGGATGGGAC 61.219 66.667 20.65 4.57 45.47 4.46
58 59 1.377856 GGGACAGGAGCTTTGAGGC 60.378 63.158 6.21 0.00 0.00 4.70
59 60 1.743252 GGACAGGAGCTTTGAGGCG 60.743 63.158 6.21 0.00 37.29 5.52
60 61 1.743252 GACAGGAGCTTTGAGGCGG 60.743 63.158 6.21 0.00 37.29 6.13
62 63 1.449246 CAGGAGCTTTGAGGCGGAG 60.449 63.158 0.00 0.00 37.29 4.63
63 64 2.124942 GGAGCTTTGAGGCGGAGG 60.125 66.667 0.00 0.00 37.29 4.30
64 65 2.124942 GAGCTTTGAGGCGGAGGG 60.125 66.667 0.00 0.00 37.29 4.30
65 66 3.689002 GAGCTTTGAGGCGGAGGGG 62.689 68.421 0.00 0.00 37.29 4.79
66 67 4.035102 GCTTTGAGGCGGAGGGGT 62.035 66.667 0.00 0.00 0.00 4.95
67 68 2.045926 CTTTGAGGCGGAGGGGTG 60.046 66.667 0.00 0.00 0.00 4.61
81 82 4.410400 GGTGGTGCGGGGAAGGAG 62.410 72.222 0.00 0.00 0.00 3.69
82 83 4.410400 GTGGTGCGGGGAAGGAGG 62.410 72.222 0.00 0.00 0.00 4.30
84 85 3.787001 GGTGCGGGGAAGGAGGAG 61.787 72.222 0.00 0.00 0.00 3.69
85 86 3.787001 GTGCGGGGAAGGAGGAGG 61.787 72.222 0.00 0.00 0.00 4.30
88 89 3.083997 CGGGGAAGGAGGAGGGTG 61.084 72.222 0.00 0.00 0.00 4.61
90 91 1.996187 GGGGAAGGAGGAGGGTGAC 60.996 68.421 0.00 0.00 0.00 3.67
91 92 2.359967 GGGAAGGAGGAGGGTGACG 61.360 68.421 0.00 0.00 0.00 4.35
92 93 2.359967 GGAAGGAGGAGGGTGACGG 61.360 68.421 0.00 0.00 0.00 4.79
93 94 3.003763 AAGGAGGAGGGTGACGGC 61.004 66.667 0.00 0.00 0.00 5.68
122 123 2.520020 ACCGTCGGTGTCACTGGA 60.520 61.111 18.08 2.81 32.98 3.86
124 125 2.258591 CGTCGGTGTCACTGGAGG 59.741 66.667 11.94 7.29 0.00 4.30
127 128 4.394712 CGGTGTCACTGGAGGGGC 62.395 72.222 3.65 0.00 0.00 5.80
130 131 2.204034 TGTCACTGGAGGGGCAGA 59.796 61.111 0.00 0.00 0.00 4.26
131 132 1.915266 TGTCACTGGAGGGGCAGAG 60.915 63.158 0.00 0.00 0.00 3.35
134 135 2.285969 ACTGGAGGGGCAGAGCAT 60.286 61.111 0.00 0.00 0.00 3.79
135 136 2.192443 CTGGAGGGGCAGAGCATG 59.808 66.667 0.00 0.00 0.00 4.06
136 137 3.414193 TGGAGGGGCAGAGCATGG 61.414 66.667 0.00 0.00 0.00 3.66
137 138 3.092511 GGAGGGGCAGAGCATGGA 61.093 66.667 0.00 0.00 0.00 3.41
139 140 1.072852 GAGGGGCAGAGCATGGATC 59.927 63.158 0.00 0.00 0.00 3.36
140 141 1.385631 AGGGGCAGAGCATGGATCT 60.386 57.895 0.00 0.00 0.00 2.75
141 142 0.992431 AGGGGCAGAGCATGGATCTT 60.992 55.000 0.00 0.00 0.00 2.40
142 143 0.822532 GGGGCAGAGCATGGATCTTG 60.823 60.000 0.00 0.00 0.00 3.02
143 144 0.182061 GGGCAGAGCATGGATCTTGA 59.818 55.000 0.00 0.00 0.00 3.02
144 145 1.409241 GGGCAGAGCATGGATCTTGAA 60.409 52.381 0.00 0.00 0.00 2.69
145 146 1.674962 GGCAGAGCATGGATCTTGAAC 59.325 52.381 0.00 0.00 0.00 3.18
146 147 2.362736 GCAGAGCATGGATCTTGAACA 58.637 47.619 0.00 0.00 0.00 3.18
147 148 2.097142 GCAGAGCATGGATCTTGAACAC 59.903 50.000 0.00 0.00 0.00 3.32
148 149 2.681848 CAGAGCATGGATCTTGAACACC 59.318 50.000 0.00 0.00 0.00 4.16
149 150 1.667724 GAGCATGGATCTTGAACACCG 59.332 52.381 0.00 0.00 0.00 4.94
150 151 0.734889 GCATGGATCTTGAACACCGG 59.265 55.000 0.00 0.00 0.00 5.28
152 153 0.255890 ATGGATCTTGAACACCGGGG 59.744 55.000 0.00 0.00 0.00 5.73
153 154 1.077716 GGATCTTGAACACCGGGGG 60.078 63.158 9.50 0.00 0.00 5.40
154 155 1.559065 GGATCTTGAACACCGGGGGA 61.559 60.000 9.50 0.00 0.00 4.81
155 156 0.107654 GATCTTGAACACCGGGGGAG 60.108 60.000 9.50 0.00 0.00 4.30
156 157 1.562672 ATCTTGAACACCGGGGGAGG 61.563 60.000 9.50 0.00 37.30 4.30
157 158 3.253838 TTGAACACCGGGGGAGGG 61.254 66.667 9.50 0.00 35.02 4.30
176 177 3.103911 GCGGTGGACGTCACTTCG 61.104 66.667 18.91 15.32 45.38 3.79
177 178 2.430244 CGGTGGACGTCACTTCGG 60.430 66.667 18.91 5.00 45.38 4.30
178 179 2.732658 GGTGGACGTCACTTCGGT 59.267 61.111 18.91 0.00 45.38 4.69
179 180 1.372623 GGTGGACGTCACTTCGGTC 60.373 63.158 18.91 0.00 45.38 4.79
180 181 1.728426 GTGGACGTCACTTCGGTCG 60.728 63.158 18.91 0.00 42.86 4.79
181 182 2.804090 GGACGTCACTTCGGTCGC 60.804 66.667 18.91 0.00 34.94 5.19
182 183 2.804090 GACGTCACTTCGGTCGCC 60.804 66.667 11.55 0.00 34.94 5.54
199 200 3.955101 CGGCGTAGGAGCTCGGAG 61.955 72.222 7.83 0.00 37.29 4.63
200 201 3.597728 GGCGTAGGAGCTCGGAGG 61.598 72.222 7.83 4.79 37.29 4.30
201 202 2.829458 GCGTAGGAGCTCGGAGGT 60.829 66.667 9.87 9.87 0.00 3.85
202 203 2.836793 GCGTAGGAGCTCGGAGGTC 61.837 68.421 25.09 25.09 41.73 3.85
204 205 2.188161 GTAGGAGCTCGGAGGTCGG 61.188 68.421 25.74 0.00 43.29 4.79
205 206 2.372890 TAGGAGCTCGGAGGTCGGA 61.373 63.158 25.74 15.82 43.29 4.55
206 207 2.326773 TAGGAGCTCGGAGGTCGGAG 62.327 65.000 25.74 9.59 43.29 4.63
214 215 4.816984 GAGGTCGGAGGCGGAGGA 62.817 72.222 0.00 0.00 0.00 3.71
215 216 4.824515 AGGTCGGAGGCGGAGGAG 62.825 72.222 0.00 0.00 0.00 3.69
219 220 3.299190 CGGAGGCGGAGGAGGATC 61.299 72.222 0.00 0.00 0.00 3.36
221 222 1.458588 GGAGGCGGAGGAGGATCTT 60.459 63.158 0.00 0.00 33.73 2.40
223 224 1.753368 GAGGCGGAGGAGGATCTTGG 61.753 65.000 0.00 0.00 33.73 3.61
226 227 1.045911 GCGGAGGAGGATCTTGGTCT 61.046 60.000 0.00 0.00 33.73 3.85
227 228 0.749649 CGGAGGAGGATCTTGGTCTG 59.250 60.000 0.00 0.00 33.73 3.51
228 229 1.686428 CGGAGGAGGATCTTGGTCTGA 60.686 57.143 0.00 0.00 33.73 3.27
229 230 1.760029 GGAGGAGGATCTTGGTCTGAC 59.240 57.143 0.00 0.00 33.73 3.51
230 231 1.407258 GAGGAGGATCTTGGTCTGACG 59.593 57.143 1.07 0.00 33.73 4.35
231 232 0.461961 GGAGGATCTTGGTCTGACGG 59.538 60.000 1.07 0.00 33.73 4.79
232 233 0.179097 GAGGATCTTGGTCTGACGGC 60.179 60.000 1.07 0.00 0.00 5.68
233 234 1.519455 GGATCTTGGTCTGACGGCG 60.519 63.158 4.80 4.80 0.00 6.46
234 235 2.125512 ATCTTGGTCTGACGGCGC 60.126 61.111 6.90 0.00 0.00 6.53
235 236 3.665675 ATCTTGGTCTGACGGCGCC 62.666 63.158 19.07 19.07 0.00 6.53
237 238 4.680237 TTGGTCTGACGGCGCCTG 62.680 66.667 26.68 20.24 0.00 4.85
250 251 4.838486 GCCTGTCGGTCGCGAGAG 62.838 72.222 10.24 6.75 43.49 3.20
251 252 3.125573 CCTGTCGGTCGCGAGAGA 61.126 66.667 10.24 9.53 43.49 3.10
253 254 3.726631 CTGTCGGTCGCGAGAGAGC 62.727 68.421 10.24 7.60 43.49 4.09
261 262 3.871574 GCGAGAGAGCGAGCGAGT 61.872 66.667 0.00 0.00 0.00 4.18
262 263 2.323105 CGAGAGAGCGAGCGAGTC 59.677 66.667 0.00 0.00 0.00 3.36
271 272 4.990288 GAGCGAGTCGAGGGTTTT 57.010 55.556 18.61 0.00 0.00 2.43
272 273 2.739407 GAGCGAGTCGAGGGTTTTC 58.261 57.895 18.61 0.00 0.00 2.29
274 275 0.244178 AGCGAGTCGAGGGTTTTCTC 59.756 55.000 18.61 0.00 0.00 2.87
275 276 0.736672 GCGAGTCGAGGGTTTTCTCC 60.737 60.000 18.61 0.00 0.00 3.71
285 286 3.562343 GGGTTTTCTCCCTGACCTATC 57.438 52.381 0.00 0.00 43.85 2.08
286 287 2.844348 GGGTTTTCTCCCTGACCTATCA 59.156 50.000 0.00 0.00 43.85 2.15
287 288 3.370633 GGGTTTTCTCCCTGACCTATCAC 60.371 52.174 0.00 0.00 43.85 3.06
288 289 3.370633 GGTTTTCTCCCTGACCTATCACC 60.371 52.174 0.00 0.00 0.00 4.02
289 290 2.940514 TTCTCCCTGACCTATCACCA 57.059 50.000 0.00 0.00 0.00 4.17
291 292 1.123928 CTCCCTGACCTATCACCACC 58.876 60.000 0.00 0.00 0.00 4.61
292 293 0.415830 TCCCTGACCTATCACCACCA 59.584 55.000 0.00 0.00 0.00 4.17
295 296 0.179000 CTGACCTATCACCACCAGGC 59.821 60.000 0.00 0.00 39.06 4.85
296 297 0.546507 TGACCTATCACCACCAGGCA 60.547 55.000 0.00 0.00 39.06 4.75
298 299 1.212935 GACCTATCACCACCAGGCAAT 59.787 52.381 0.00 0.00 39.06 3.56
299 300 1.212935 ACCTATCACCACCAGGCAATC 59.787 52.381 0.00 0.00 39.06 2.67
300 301 1.492176 CCTATCACCACCAGGCAATCT 59.508 52.381 0.00 0.00 39.06 2.40
301 302 2.705658 CCTATCACCACCAGGCAATCTA 59.294 50.000 0.00 0.00 39.06 1.98
303 304 3.498774 ATCACCACCAGGCAATCTATC 57.501 47.619 0.00 0.00 39.06 2.08
305 306 1.492176 CACCACCAGGCAATCTATCCT 59.508 52.381 0.00 0.00 39.06 3.24
307 308 1.270518 CCACCAGGCAATCTATCCTCG 60.271 57.143 0.00 0.00 0.00 4.63
309 310 0.322975 CCAGGCAATCTATCCTCGGG 59.677 60.000 0.00 0.00 0.00 5.14
310 311 1.342074 CAGGCAATCTATCCTCGGGA 58.658 55.000 0.00 0.00 35.55 5.14
311 312 1.905215 CAGGCAATCTATCCTCGGGAT 59.095 52.381 9.89 9.89 45.40 3.85
312 313 1.905215 AGGCAATCTATCCTCGGGATG 59.095 52.381 13.77 6.07 43.06 3.51
313 314 1.065854 GGCAATCTATCCTCGGGATGG 60.066 57.143 13.77 11.44 43.06 3.51
314 315 1.065854 GCAATCTATCCTCGGGATGGG 60.066 57.143 13.77 7.97 43.06 4.00
316 317 0.618968 ATCTATCCTCGGGATGGGCC 60.619 60.000 13.77 0.00 43.06 5.80
335 336 3.330720 CGGAAAGGCCAGGGGTCT 61.331 66.667 5.01 0.00 40.63 3.85
339 340 3.181282 AAGGCCAGGGGTCTTTCC 58.819 61.111 5.01 0.00 46.43 3.13
348 349 3.479979 GGTCTTTCCCCTCCGTGT 58.520 61.111 0.00 0.00 0.00 4.49
349 350 1.003718 GGTCTTTCCCCTCCGTGTG 60.004 63.158 0.00 0.00 0.00 3.82
350 351 1.752833 GTCTTTCCCCTCCGTGTGT 59.247 57.895 0.00 0.00 0.00 3.72
352 353 0.761323 TCTTTCCCCTCCGTGTGTCA 60.761 55.000 0.00 0.00 0.00 3.58
353 354 0.602905 CTTTCCCCTCCGTGTGTCAC 60.603 60.000 0.00 0.00 0.00 3.67
355 356 3.238497 CCCCTCCGTGTGTCACCA 61.238 66.667 0.00 0.00 0.00 4.17
356 357 2.813726 CCCCTCCGTGTGTCACCAA 61.814 63.158 0.00 0.00 0.00 3.67
357 358 1.147376 CCCTCCGTGTGTCACCAAA 59.853 57.895 0.00 0.00 0.00 3.28
358 359 0.250727 CCCTCCGTGTGTCACCAAAT 60.251 55.000 0.00 0.00 0.00 2.32
359 360 0.874390 CCTCCGTGTGTCACCAAATG 59.126 55.000 0.00 0.00 0.00 2.32
360 361 0.874390 CTCCGTGTGTCACCAAATGG 59.126 55.000 0.00 0.00 36.43 3.16
361 362 1.169661 TCCGTGTGTCACCAAATGGC 61.170 55.000 0.00 0.00 35.23 4.40
363 364 1.371635 GTGTGTCACCAAATGGCGC 60.372 57.895 0.00 0.00 44.10 6.53
364 365 1.528076 TGTGTCACCAAATGGCGCT 60.528 52.632 7.64 0.00 44.17 5.92
366 367 2.126346 GTCACCAAATGGCGCTGC 60.126 61.111 7.64 0.00 39.32 5.25
389 390 4.410400 CCCCCGGGTCAACTCAGC 62.410 72.222 21.85 0.00 0.00 4.26
390 391 4.410400 CCCCGGGTCAACTCAGCC 62.410 72.222 21.85 0.00 0.00 4.85
392 393 3.636231 CCGGGTCAACTCAGCCCA 61.636 66.667 0.00 0.00 42.44 5.36
393 394 2.671070 CGGGTCAACTCAGCCCAT 59.329 61.111 0.00 0.00 42.44 4.00
394 395 1.746615 CGGGTCAACTCAGCCCATG 60.747 63.158 0.00 0.00 42.44 3.66
407 408 3.087253 CCATGGCTACCCGACCCA 61.087 66.667 0.00 0.00 0.00 4.51
408 409 2.505982 CATGGCTACCCGACCCAG 59.494 66.667 0.00 0.00 31.12 4.45
409 410 2.768344 ATGGCTACCCGACCCAGG 60.768 66.667 0.00 0.00 31.12 4.45
418 419 1.227556 CCGACCCAGGGAAATAGCG 60.228 63.158 14.54 5.62 0.00 4.26
420 421 1.148498 GACCCAGGGAAATAGCGGG 59.852 63.158 14.54 0.00 43.02 6.13
422 423 2.076184 CCCAGGGAAATAGCGGGGA 61.076 63.158 0.00 0.00 37.80 4.81
423 424 1.427072 CCCAGGGAAATAGCGGGGAT 61.427 60.000 0.00 0.00 37.80 3.85
425 426 0.036875 CAGGGAAATAGCGGGGATCC 59.963 60.000 1.92 1.92 0.00 3.36
426 427 1.379146 GGGAAATAGCGGGGATCCC 59.621 63.158 23.95 23.95 42.74 3.85
442 443 2.694616 CCCCCGGGATCCCTTGAA 60.695 66.667 28.42 0.00 37.50 2.69
443 444 2.313427 CCCCCGGGATCCCTTGAAA 61.313 63.158 28.42 0.00 37.50 2.69
444 445 1.076995 CCCCGGGATCCCTTGAAAC 60.077 63.158 28.42 0.14 0.00 2.78
446 447 1.688811 CCGGGATCCCTTGAAACCA 59.311 57.895 28.42 0.00 0.00 3.67
447 448 0.039035 CCGGGATCCCTTGAAACCAA 59.961 55.000 28.42 0.00 0.00 3.67
448 449 1.549037 CCGGGATCCCTTGAAACCAAA 60.549 52.381 28.42 0.00 0.00 3.28
449 450 2.456577 CGGGATCCCTTGAAACCAAAT 58.543 47.619 28.42 0.00 0.00 2.32
450 451 2.166254 CGGGATCCCTTGAAACCAAATG 59.834 50.000 28.42 4.12 0.00 2.32
451 452 3.440127 GGGATCCCTTGAAACCAAATGA 58.560 45.455 24.69 0.00 0.00 2.57
452 453 3.448660 GGGATCCCTTGAAACCAAATGAG 59.551 47.826 24.69 0.00 0.00 2.90
453 454 3.118992 GGATCCCTTGAAACCAAATGAGC 60.119 47.826 0.00 0.00 0.00 4.26
455 456 1.276138 CCCTTGAAACCAAATGAGCCC 59.724 52.381 0.00 0.00 0.00 5.19
456 457 2.250924 CCTTGAAACCAAATGAGCCCT 58.749 47.619 0.00 0.00 0.00 5.19
457 458 2.028748 CCTTGAAACCAAATGAGCCCTG 60.029 50.000 0.00 0.00 0.00 4.45
881 882 1.452108 GCGGCCCAGCTAATTCTGT 60.452 57.895 0.00 0.00 32.32 3.41
1062 1078 1.829096 GGTACCCCTCTCTCTCGCC 60.829 68.421 0.00 0.00 0.00 5.54
1077 1093 3.141488 GCCCTCGCTCTCTCGGAA 61.141 66.667 0.00 0.00 0.00 4.30
1083 1099 1.061253 CGCTCTCTCGGAACTCGTC 59.939 63.158 0.00 0.00 40.32 4.20
1106 1122 1.091771 CGTCAATTGCTCATCGGCCT 61.092 55.000 0.00 0.00 0.00 5.19
1156 1182 4.995487 GTCGAAATCAACTAGGGTTTCACT 59.005 41.667 0.00 0.00 32.73 3.41
1179 1205 1.495951 GGATTGGCGTTCGTGTCAC 59.504 57.895 0.00 0.00 0.00 3.67
1232 1258 1.139853 CGAAGATCAAGGAAGGGGAGG 59.860 57.143 0.00 0.00 0.00 4.30
1310 1336 1.248486 GGAGAAAAAGGTGCAGGACC 58.752 55.000 1.97 1.97 46.58 4.46
1396 2797 4.487412 GCGCGCCACTACTACCGT 62.487 66.667 23.24 0.00 0.00 4.83
1400 2801 2.202703 GCCACTACTACCGTGCCG 60.203 66.667 0.00 0.00 0.00 5.69
1401 2802 2.998279 GCCACTACTACCGTGCCGT 61.998 63.158 0.00 0.00 0.00 5.68
1415 2816 2.511829 CCGTCTCGCTCTCGGAGA 60.512 66.667 7.60 7.60 46.05 3.71
1417 2818 1.645704 CCGTCTCGCTCTCGGAGAAA 61.646 60.000 9.32 0.00 46.05 2.52
1421 2822 0.380378 CTCGCTCTCGGAGAAAGAGG 59.620 60.000 21.95 8.54 40.54 3.69
1428 2829 1.134175 CTCGGAGAAAGAGGAGCTGTC 59.866 57.143 0.00 0.00 34.09 3.51
1474 2875 2.421739 GCCACCATCGCCGAGTAT 59.578 61.111 0.00 0.00 0.00 2.12
1561 2962 0.178897 TGGAGTTCCCCGAACCCTTA 60.179 55.000 0.98 0.00 42.85 2.69
1631 3049 1.004440 GTTCTCGCTCCTTGCACCT 60.004 57.895 0.00 0.00 43.06 4.00
1686 3527 9.751542 CTAATTAGTCTACGACCATTTCAGAAT 57.248 33.333 4.18 0.00 32.18 2.40
1838 7480 8.519492 AATCAATTAACGGTTCAGATTTTGTG 57.481 30.769 0.00 0.00 0.00 3.33
1881 7524 1.098050 CAGGCCAGTAGAAATGTGCC 58.902 55.000 5.01 0.00 35.48 5.01
1883 7526 0.811281 GGCCAGTAGAAATGTGCCAC 59.189 55.000 0.00 0.00 35.39 5.01
1886 7529 3.545703 GCCAGTAGAAATGTGCCACTAT 58.454 45.455 0.00 0.00 0.00 2.12
1961 7604 5.986501 AGCTCTATTACCATGGCTAGTAC 57.013 43.478 13.04 7.40 0.00 2.73
2110 10157 2.367567 TCTCCGGTTTTGTCTTAGCAGT 59.632 45.455 0.00 0.00 0.00 4.40
2201 10353 4.698304 GGTTCACCATCGATTTGTTTCCTA 59.302 41.667 0.00 0.00 35.64 2.94
2286 10438 1.133513 TGGTCTGTGGACAATGCCTTT 60.134 47.619 0.00 0.00 43.77 3.11
2319 10471 5.360591 CGTCCTAGCTCCAATTATGTCTTT 58.639 41.667 0.00 0.00 0.00 2.52
2370 10522 5.854866 CACTATTTCACTGCACACTTGATTG 59.145 40.000 0.00 0.00 0.00 2.67
2446 10622 3.963129 TGGTTTGAGACACCAAGAACTT 58.037 40.909 0.00 0.00 41.58 2.66
2451 10627 4.327982 TGAGACACCAAGAACTTGAGAG 57.672 45.455 14.99 7.46 42.93 3.20
2695 10879 0.107945 GCTCTGGCTTCTGGTTCGAT 60.108 55.000 0.00 0.00 35.22 3.59
2700 10885 1.153147 GCTTCTGGTTCGATCCCCC 60.153 63.158 10.02 0.00 0.00 5.40
2701 10886 1.144057 CTTCTGGTTCGATCCCCCG 59.856 63.158 10.02 0.00 0.00 5.73
2702 10887 1.611261 TTCTGGTTCGATCCCCCGT 60.611 57.895 10.02 0.00 0.00 5.28
2722 10919 3.427503 CGTGCCACTTTCAACTCAAAAGT 60.428 43.478 0.00 0.00 45.41 2.66
2724 10921 5.646606 GTGCCACTTTCAACTCAAAAGTTA 58.353 37.500 0.00 0.00 43.99 2.24
2783 11200 4.382470 CCTTGGGACTCTTCTATGTGTCTG 60.382 50.000 0.00 0.00 32.83 3.51
2784 11201 4.047627 TGGGACTCTTCTATGTGTCTGA 57.952 45.455 0.00 0.00 32.83 3.27
2785 11202 3.764434 TGGGACTCTTCTATGTGTCTGAC 59.236 47.826 0.00 0.00 32.83 3.51
2786 11203 4.020543 GGGACTCTTCTATGTGTCTGACT 58.979 47.826 9.51 0.00 32.83 3.41
2801 12150 6.087522 GTGTCTGACTGATTGTAGTAGTCAC 58.912 44.000 9.51 0.00 44.10 3.67
2892 12241 2.092103 TGTTCAGGGGCACAAAAGTAGT 60.092 45.455 0.00 0.00 0.00 2.73
2902 12251 3.508762 CACAAAAGTAGTCGCTCGGTAT 58.491 45.455 0.00 0.00 0.00 2.73
2904 12253 5.279384 CACAAAAGTAGTCGCTCGGTATAT 58.721 41.667 0.00 0.00 0.00 0.86
3012 12693 1.335506 CGCCAAACGTTTACCATTGCT 60.336 47.619 14.20 0.00 36.87 3.91
3051 12738 1.202940 AGCCCCTCCAGTTTTGTCTTC 60.203 52.381 0.00 0.00 0.00 2.87
3070 12757 0.235665 CGCAGCGAAACAATGTGACT 59.764 50.000 9.98 0.00 0.00 3.41
3108 12806 9.548208 GTAGAATTTTGATCTGCTTCAGTTAAC 57.452 33.333 0.00 0.00 32.61 2.01
3128 14538 1.927174 CGTCAGGTTCACCATCGATTC 59.073 52.381 0.00 0.00 38.89 2.52
3174 14584 7.007723 TCCCAAACAAATGTACCAAACTCTAT 58.992 34.615 0.00 0.00 0.00 1.98
3231 14641 3.181440 TGGACAATGCCTTCAGACTTCTT 60.181 43.478 0.00 0.00 0.00 2.52
3264 14675 6.980978 GCTGCAGTTATGTCTTGTTCTATCTA 59.019 38.462 16.64 0.00 0.00 1.98
3292 14703 3.066342 CAGAGCCTGGCATTCACTATTTG 59.934 47.826 22.65 0.00 0.00 2.32
3298 14709 4.271049 CCTGGCATTCACTATTTGACTACG 59.729 45.833 0.00 0.00 32.26 3.51
3313 14724 5.940192 TGACTACGCACTTGATTTTTCAT 57.060 34.783 0.00 0.00 0.00 2.57
3315 14726 7.060600 TGACTACGCACTTGATTTTTCATAG 57.939 36.000 0.00 0.00 0.00 2.23
3374 14787 1.219213 TGTTCCATTTGGTTGGGGACT 59.781 47.619 0.00 0.00 37.37 3.85
3468 14892 3.004106 CACTTGGAAAAGAGAGGCAGTTG 59.996 47.826 0.00 0.00 0.00 3.16
3616 15043 0.321653 ATGTGGCTTCTGGTTCGACC 60.322 55.000 0.00 0.00 39.22 4.79
3643 15070 3.180613 GTGGAAGCGAGTTTAGCTACTC 58.819 50.000 6.58 6.58 45.31 2.59
3645 15072 2.165845 GGAAGCGAGTTTAGCTACTCCA 59.834 50.000 10.41 0.00 45.31 3.86
3661 15088 2.817844 ACTCCAGTTAAAATTCGTGGGC 59.182 45.455 0.00 0.00 0.00 5.36
3690 15124 0.827368 GGGTCTCCTGTAGCTCCTTG 59.173 60.000 0.00 0.00 0.00 3.61
3703 15435 6.521162 TGTAGCTCCTTGATATAATTTCGCA 58.479 36.000 0.00 0.00 0.00 5.10
3726 15458 3.053917 GGGTTCCTGCCTTATTGGACTAA 60.054 47.826 0.00 0.00 38.35 2.24
3792 15579 0.463295 CATGTAGGCCTGCTGTGGAG 60.463 60.000 22.25 1.81 0.00 3.86
3901 15695 2.239654 TCATGGTTCTAGGGGCTTTGAG 59.760 50.000 0.00 0.00 0.00 3.02
3927 15721 4.364415 TTTTAAGCACGTCTGCAGTTTT 57.636 36.364 14.67 3.40 46.97 2.43
3976 15770 2.820197 AGCTGTGAGATTGTCAGTACGA 59.180 45.455 0.00 0.00 35.13 3.43
3996 15790 4.215201 CGAGTGTAGCTATGAACATCTCG 58.785 47.826 17.06 17.06 38.99 4.04
4023 15817 0.798776 GCGAACATGTGGGTTCTGAG 59.201 55.000 0.00 0.00 43.87 3.35
4026 15820 2.810400 CGAACATGTGGGTTCTGAGGTT 60.810 50.000 0.00 0.00 43.87 3.50
4064 15859 2.025981 TGCTCTGTGCCTGGTGAATTAT 60.026 45.455 0.00 0.00 42.00 1.28
4071 15866 3.130869 GTGCCTGGTGAATTATGAATGCA 59.869 43.478 0.00 0.00 0.00 3.96
4206 16001 5.289595 GGTTTCACCAATTTCAAGTCTTCC 58.710 41.667 0.00 0.00 38.42 3.46
4305 18619 4.018141 TGTGGGGATTGAGAAGTGATCATT 60.018 41.667 0.00 0.00 0.00 2.57
4314 18649 6.053632 TGAGAAGTGATCATTAAGGCAGAA 57.946 37.500 0.00 0.00 0.00 3.02
4337 18672 6.059787 ACTATTCAACTTCAAGAGGCAGAT 57.940 37.500 0.00 0.00 0.00 2.90
4356 18691 5.253330 CAGATAAAGGGCCTAACACTTTCA 58.747 41.667 6.41 0.00 36.07 2.69
4391 18726 6.480763 TCCACATAATTAGCTGGAACTTCAA 58.519 36.000 10.26 0.00 29.50 2.69
4401 18736 0.526211 GGAACTTCAAATCCGTGGGC 59.474 55.000 0.00 0.00 0.00 5.36
4524 18985 3.453717 TGCTAGCAATCTTCCAGTCATCT 59.546 43.478 16.84 0.00 0.00 2.90
4532 18993 2.768527 TCTTCCAGTCATCTGATCCCAC 59.231 50.000 0.00 0.00 43.76 4.61
4599 19114 5.815740 TCCAGTTTCTGTTTGTCAAGTACTC 59.184 40.000 0.00 0.00 0.00 2.59
4675 19190 6.428083 TTCACAGGGATGAACTGTAACTAA 57.572 37.500 0.00 0.00 46.76 2.24
4694 19209 8.851145 GTAACTAATTACTAGTACCCCAGGTAC 58.149 40.741 14.78 14.78 45.24 3.34
4776 19291 1.064060 GATGAGGCATAAACACGGCAC 59.936 52.381 0.00 0.00 0.00 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.972198 CAGGCACCTACTTCGACCA 59.028 57.895 0.00 0.00 0.00 4.02
3 4 2.978824 GGCAGGCACCTACTTCGA 59.021 61.111 0.00 0.00 0.00 3.71
4 5 2.509336 CGGCAGGCACCTACTTCG 60.509 66.667 0.00 0.00 0.00 3.79
6 7 4.410400 GGCGGCAGGCACCTACTT 62.410 66.667 3.07 0.00 46.16 2.24
27 28 3.219198 GTCCCATCCGGCAATGGC 61.219 66.667 15.31 0.00 44.17 4.40
28 29 1.825191 CTGTCCCATCCGGCAATGG 60.825 63.158 14.05 14.05 44.96 3.16
29 30 1.825191 CCTGTCCCATCCGGCAATG 60.825 63.158 0.00 0.00 0.00 2.82
30 31 1.987807 CTCCTGTCCCATCCGGCAAT 61.988 60.000 0.00 0.00 0.00 3.56
31 32 2.609299 TCCTGTCCCATCCGGCAA 60.609 61.111 0.00 0.00 0.00 4.52
32 33 3.083349 CTCCTGTCCCATCCGGCA 61.083 66.667 0.00 0.00 0.00 5.69
33 34 4.554036 GCTCCTGTCCCATCCGGC 62.554 72.222 0.00 0.00 0.00 6.13
34 35 1.915078 AAAGCTCCTGTCCCATCCGG 61.915 60.000 0.00 0.00 0.00 5.14
35 36 0.745845 CAAAGCTCCTGTCCCATCCG 60.746 60.000 0.00 0.00 0.00 4.18
36 37 0.620556 TCAAAGCTCCTGTCCCATCC 59.379 55.000 0.00 0.00 0.00 3.51
41 42 1.743252 CGCCTCAAAGCTCCTGTCC 60.743 63.158 0.00 0.00 0.00 4.02
42 43 1.743252 CCGCCTCAAAGCTCCTGTC 60.743 63.158 0.00 0.00 0.00 3.51
43 44 2.177594 CTCCGCCTCAAAGCTCCTGT 62.178 60.000 0.00 0.00 0.00 4.00
44 45 1.449246 CTCCGCCTCAAAGCTCCTG 60.449 63.158 0.00 0.00 0.00 3.86
45 46 2.664081 CCTCCGCCTCAAAGCTCCT 61.664 63.158 0.00 0.00 0.00 3.69
48 49 3.721706 CCCCTCCGCCTCAAAGCT 61.722 66.667 0.00 0.00 0.00 3.74
49 50 4.035102 ACCCCTCCGCCTCAAAGC 62.035 66.667 0.00 0.00 0.00 3.51
50 51 2.045926 CACCCCTCCGCCTCAAAG 60.046 66.667 0.00 0.00 0.00 2.77
51 52 3.646715 CCACCCCTCCGCCTCAAA 61.647 66.667 0.00 0.00 0.00 2.69
52 53 4.974438 ACCACCCCTCCGCCTCAA 62.974 66.667 0.00 0.00 0.00 3.02
64 65 4.410400 CTCCTTCCCCGCACCACC 62.410 72.222 0.00 0.00 0.00 4.61
65 66 4.410400 CCTCCTTCCCCGCACCAC 62.410 72.222 0.00 0.00 0.00 4.16
66 67 4.649705 TCCTCCTTCCCCGCACCA 62.650 66.667 0.00 0.00 0.00 4.17
67 68 3.787001 CTCCTCCTTCCCCGCACC 61.787 72.222 0.00 0.00 0.00 5.01
71 72 3.083997 CACCCTCCTCCTTCCCCG 61.084 72.222 0.00 0.00 0.00 5.73
72 73 1.996187 GTCACCCTCCTCCTTCCCC 60.996 68.421 0.00 0.00 0.00 4.81
73 74 2.359967 CGTCACCCTCCTCCTTCCC 61.360 68.421 0.00 0.00 0.00 3.97
74 75 2.359967 CCGTCACCCTCCTCCTTCC 61.360 68.421 0.00 0.00 0.00 3.46
75 76 3.020237 GCCGTCACCCTCCTCCTTC 62.020 68.421 0.00 0.00 0.00 3.46
76 77 3.003763 GCCGTCACCCTCCTCCTT 61.004 66.667 0.00 0.00 0.00 3.36
105 106 2.520020 TCCAGTGACACCGACGGT 60.520 61.111 15.37 15.37 35.62 4.83
106 107 2.258591 CTCCAGTGACACCGACGG 59.741 66.667 13.61 13.61 0.00 4.79
107 108 2.258591 CCTCCAGTGACACCGACG 59.741 66.667 0.84 0.00 0.00 5.12
108 109 2.657237 CCCTCCAGTGACACCGAC 59.343 66.667 0.84 0.00 0.00 4.79
109 110 2.603473 CCCCTCCAGTGACACCGA 60.603 66.667 0.84 0.00 0.00 4.69
110 111 4.394712 GCCCCTCCAGTGACACCG 62.395 72.222 0.84 0.00 0.00 4.94
112 113 2.177594 CTCTGCCCCTCCAGTGACAC 62.178 65.000 0.00 0.00 34.47 3.67
113 114 1.915266 CTCTGCCCCTCCAGTGACA 60.915 63.158 0.00 0.00 34.47 3.58
114 115 2.985456 CTCTGCCCCTCCAGTGAC 59.015 66.667 0.00 0.00 34.47 3.67
115 116 3.005539 GCTCTGCCCCTCCAGTGA 61.006 66.667 0.00 0.00 34.47 3.41
116 117 2.677289 ATGCTCTGCCCCTCCAGTG 61.677 63.158 0.00 0.00 34.47 3.66
118 119 2.192443 CATGCTCTGCCCCTCCAG 59.808 66.667 0.00 0.00 0.00 3.86
119 120 3.414193 CCATGCTCTGCCCCTCCA 61.414 66.667 0.00 0.00 0.00 3.86
120 121 2.408880 GATCCATGCTCTGCCCCTCC 62.409 65.000 0.00 0.00 0.00 4.30
121 122 1.072852 GATCCATGCTCTGCCCCTC 59.927 63.158 0.00 0.00 0.00 4.30
122 123 0.992431 AAGATCCATGCTCTGCCCCT 60.992 55.000 0.00 0.00 0.00 4.79
124 125 0.182061 TCAAGATCCATGCTCTGCCC 59.818 55.000 0.00 0.00 0.00 5.36
127 128 2.681848 GGTGTTCAAGATCCATGCTCTG 59.318 50.000 0.00 0.00 0.00 3.35
130 131 1.679944 CCGGTGTTCAAGATCCATGCT 60.680 52.381 0.00 0.00 0.00 3.79
131 132 0.734889 CCGGTGTTCAAGATCCATGC 59.265 55.000 0.00 0.00 0.00 4.06
134 135 1.682849 CCCCGGTGTTCAAGATCCA 59.317 57.895 0.00 0.00 0.00 3.41
135 136 1.077716 CCCCCGGTGTTCAAGATCC 60.078 63.158 0.00 0.00 0.00 3.36
136 137 0.107654 CTCCCCCGGTGTTCAAGATC 60.108 60.000 0.00 0.00 0.00 2.75
137 138 1.562672 CCTCCCCCGGTGTTCAAGAT 61.563 60.000 0.00 0.00 0.00 2.40
139 140 2.351276 CCTCCCCCGGTGTTCAAG 59.649 66.667 0.00 0.00 0.00 3.02
140 141 3.253838 CCCTCCCCCGGTGTTCAA 61.254 66.667 0.00 0.00 0.00 2.69
157 158 4.309950 AAGTGACGTCCACCGCCC 62.310 66.667 14.12 0.00 46.87 6.13
158 159 2.737376 GAAGTGACGTCCACCGCC 60.737 66.667 14.12 0.69 46.87 6.13
159 160 3.103911 CGAAGTGACGTCCACCGC 61.104 66.667 14.12 5.63 46.87 5.68
160 161 2.430244 CCGAAGTGACGTCCACCG 60.430 66.667 14.12 10.96 46.87 4.94
163 164 2.640989 CGACCGAAGTGACGTCCA 59.359 61.111 14.12 0.00 0.00 4.02
164 165 2.804090 GCGACCGAAGTGACGTCC 60.804 66.667 14.12 4.42 0.00 4.79
182 183 3.955101 CTCCGAGCTCCTACGCCG 61.955 72.222 8.47 0.00 0.00 6.46
184 185 2.829458 ACCTCCGAGCTCCTACGC 60.829 66.667 8.47 0.00 0.00 4.42
185 186 2.535788 CGACCTCCGAGCTCCTACG 61.536 68.421 8.47 0.00 41.76 3.51
186 187 2.188161 CCGACCTCCGAGCTCCTAC 61.188 68.421 8.47 0.00 41.76 3.18
187 188 2.192443 CCGACCTCCGAGCTCCTA 59.808 66.667 8.47 0.00 41.76 2.94
189 190 3.213402 CTCCGACCTCCGAGCTCC 61.213 72.222 8.47 0.00 41.76 4.70
190 191 3.213402 CCTCCGACCTCCGAGCTC 61.213 72.222 2.73 2.73 41.76 4.09
198 199 4.824515 CTCCTCCGCCTCCGACCT 62.825 72.222 0.00 0.00 36.29 3.85
200 201 4.816984 TCCTCCTCCGCCTCCGAC 62.817 72.222 0.00 0.00 36.29 4.79
201 202 3.793957 GATCCTCCTCCGCCTCCGA 62.794 68.421 0.00 0.00 36.29 4.55
202 203 3.299190 GATCCTCCTCCGCCTCCG 61.299 72.222 0.00 0.00 0.00 4.63
204 205 1.745264 CAAGATCCTCCTCCGCCTC 59.255 63.158 0.00 0.00 0.00 4.70
205 206 1.764054 CCAAGATCCTCCTCCGCCT 60.764 63.158 0.00 0.00 0.00 5.52
206 207 2.034048 GACCAAGATCCTCCTCCGCC 62.034 65.000 0.00 0.00 0.00 6.13
208 209 0.749649 CAGACCAAGATCCTCCTCCG 59.250 60.000 0.00 0.00 0.00 4.63
211 212 1.479709 CGTCAGACCAAGATCCTCCT 58.520 55.000 0.00 0.00 0.00 3.69
212 213 0.461961 CCGTCAGACCAAGATCCTCC 59.538 60.000 0.00 0.00 0.00 4.30
213 214 0.179097 GCCGTCAGACCAAGATCCTC 60.179 60.000 0.00 0.00 0.00 3.71
214 215 1.901085 GCCGTCAGACCAAGATCCT 59.099 57.895 0.00 0.00 0.00 3.24
215 216 1.519455 CGCCGTCAGACCAAGATCC 60.519 63.158 0.00 0.00 0.00 3.36
219 220 4.379243 AGGCGCCGTCAGACCAAG 62.379 66.667 23.20 0.00 0.00 3.61
233 234 4.838486 CTCTCGCGACCGACAGGC 62.838 72.222 3.71 0.00 42.76 4.85
234 235 3.102107 CTCTCTCGCGACCGACAGG 62.102 68.421 3.71 0.00 38.82 4.00
235 236 2.401592 CTCTCTCGCGACCGACAG 59.598 66.667 3.71 0.00 38.82 3.51
245 246 2.323105 GACTCGCTCGCTCTCTCG 59.677 66.667 0.00 0.00 0.00 4.04
246 247 2.089433 CTCGACTCGCTCGCTCTCTC 62.089 65.000 0.00 0.00 42.62 3.20
247 248 2.125472 TCGACTCGCTCGCTCTCT 60.125 61.111 0.00 0.00 42.62 3.10
248 249 2.323105 CTCGACTCGCTCGCTCTC 59.677 66.667 0.00 0.00 42.62 3.20
249 250 3.199190 CCTCGACTCGCTCGCTCT 61.199 66.667 0.00 0.00 42.62 4.09
250 251 4.244802 CCCTCGACTCGCTCGCTC 62.245 72.222 0.00 0.00 42.62 5.03
253 254 1.071567 GAAAACCCTCGACTCGCTCG 61.072 60.000 0.00 0.00 44.44 5.03
254 255 0.244178 AGAAAACCCTCGACTCGCTC 59.756 55.000 0.00 0.00 0.00 5.03
256 257 0.736672 GGAGAAAACCCTCGACTCGC 60.737 60.000 0.00 0.00 34.08 5.03
257 258 0.108756 GGGAGAAAACCCTCGACTCG 60.109 60.000 0.00 0.00 45.90 4.18
258 259 3.836762 GGGAGAAAACCCTCGACTC 57.163 57.895 0.00 0.00 45.90 3.36
266 267 3.370633 GGTGATAGGTCAGGGAGAAAACC 60.371 52.174 0.00 0.00 34.36 3.27
267 268 3.263425 TGGTGATAGGTCAGGGAGAAAAC 59.737 47.826 0.00 0.00 34.36 2.43
268 269 3.263425 GTGGTGATAGGTCAGGGAGAAAA 59.737 47.826 0.00 0.00 34.36 2.29
269 270 2.838202 GTGGTGATAGGTCAGGGAGAAA 59.162 50.000 0.00 0.00 34.36 2.52
271 272 1.343075 GGTGGTGATAGGTCAGGGAGA 60.343 57.143 0.00 0.00 34.36 3.71
272 273 1.123928 GGTGGTGATAGGTCAGGGAG 58.876 60.000 0.00 0.00 34.36 4.30
274 275 0.833287 CTGGTGGTGATAGGTCAGGG 59.167 60.000 0.00 0.00 34.36 4.45
275 276 0.833287 CCTGGTGGTGATAGGTCAGG 59.167 60.000 0.00 0.00 34.36 3.86
276 277 0.179000 GCCTGGTGGTGATAGGTCAG 59.821 60.000 0.00 0.00 34.36 3.51
278 279 0.618458 TTGCCTGGTGGTGATAGGTC 59.382 55.000 0.00 0.00 34.06 3.85
281 282 4.564406 GGATAGATTGCCTGGTGGTGATAG 60.564 50.000 0.00 0.00 35.27 2.08
282 283 3.327757 GGATAGATTGCCTGGTGGTGATA 59.672 47.826 0.00 0.00 35.27 2.15
283 284 2.107204 GGATAGATTGCCTGGTGGTGAT 59.893 50.000 0.00 0.00 35.27 3.06
284 285 1.490490 GGATAGATTGCCTGGTGGTGA 59.510 52.381 0.00 0.00 35.27 4.02
285 286 1.492176 AGGATAGATTGCCTGGTGGTG 59.508 52.381 0.00 0.00 32.06 4.17
286 287 1.771255 GAGGATAGATTGCCTGGTGGT 59.229 52.381 0.00 0.00 33.84 4.16
287 288 1.270518 CGAGGATAGATTGCCTGGTGG 60.271 57.143 0.00 0.00 33.84 4.61
288 289 1.270518 CCGAGGATAGATTGCCTGGTG 60.271 57.143 0.00 0.00 33.84 4.17
289 290 1.051812 CCGAGGATAGATTGCCTGGT 58.948 55.000 0.00 0.00 33.84 4.00
291 292 1.342074 TCCCGAGGATAGATTGCCTG 58.658 55.000 0.00 0.00 33.84 4.85
292 293 1.905215 CATCCCGAGGATAGATTGCCT 59.095 52.381 5.27 0.00 40.98 4.75
295 296 1.065854 GCCCATCCCGAGGATAGATTG 60.066 57.143 5.27 0.00 40.98 2.67
296 297 1.280457 GCCCATCCCGAGGATAGATT 58.720 55.000 5.27 0.00 40.98 2.40
298 299 1.229209 GGCCCATCCCGAGGATAGA 60.229 63.158 5.27 0.00 40.98 1.98
299 300 3.393360 GGCCCATCCCGAGGATAG 58.607 66.667 5.27 0.00 40.98 2.08
318 319 2.426305 AAAGACCCCTGGCCTTTCCG 62.426 60.000 3.32 0.00 37.80 4.30
319 320 0.612174 GAAAGACCCCTGGCCTTTCC 60.612 60.000 3.32 0.00 39.64 3.13
320 321 0.612174 GGAAAGACCCCTGGCCTTTC 60.612 60.000 11.99 11.99 42.85 2.62
321 322 1.465172 GGAAAGACCCCTGGCCTTT 59.535 57.895 3.32 0.00 33.32 3.11
322 323 3.181282 GGAAAGACCCCTGGCCTT 58.819 61.111 3.32 0.00 0.00 4.35
332 333 0.320508 GACACACGGAGGGGAAAGAC 60.321 60.000 0.00 0.00 0.00 3.01
333 334 0.761323 TGACACACGGAGGGGAAAGA 60.761 55.000 0.00 0.00 0.00 2.52
335 336 1.448497 GTGACACACGGAGGGGAAA 59.552 57.895 0.00 0.00 0.00 3.13
336 337 2.513259 GGTGACACACGGAGGGGAA 61.513 63.158 8.08 0.00 34.83 3.97
337 338 2.920912 GGTGACACACGGAGGGGA 60.921 66.667 8.08 0.00 34.83 4.81
338 339 2.332312 TTTGGTGACACACGGAGGGG 62.332 60.000 8.08 0.00 42.67 4.79
339 340 0.250727 ATTTGGTGACACACGGAGGG 60.251 55.000 8.08 0.00 42.67 4.30
341 342 0.874390 CCATTTGGTGACACACGGAG 59.126 55.000 8.08 0.00 42.67 4.63
342 343 1.169661 GCCATTTGGTGACACACGGA 61.170 55.000 8.08 0.00 42.67 4.69
372 373 4.410400 GCTGAGTTGACCCGGGGG 62.410 72.222 27.92 5.70 42.03 5.40
373 374 4.410400 GGCTGAGTTGACCCGGGG 62.410 72.222 27.92 12.73 0.00 5.73
377 378 1.379044 CCATGGGCTGAGTTGACCC 60.379 63.158 2.85 0.00 44.52 4.46
378 379 2.048603 GCCATGGGCTGAGTTGACC 61.049 63.158 15.13 0.00 46.69 4.02
379 380 3.595819 GCCATGGGCTGAGTTGAC 58.404 61.111 15.13 0.00 46.69 3.18
389 390 3.873812 GGGTCGGGTAGCCATGGG 61.874 72.222 15.13 0.00 45.71 4.00
394 395 4.791069 TCCCTGGGTCGGGTAGCC 62.791 72.222 13.56 0.00 44.95 3.93
396 397 1.692519 CTATTTCCCTGGGTCGGGTAG 59.307 57.143 13.56 5.92 44.95 3.18
397 398 1.797320 CTATTTCCCTGGGTCGGGTA 58.203 55.000 13.56 0.00 44.95 3.69
398 399 1.632965 GCTATTTCCCTGGGTCGGGT 61.633 60.000 13.56 0.00 44.95 5.28
399 400 1.148498 GCTATTTCCCTGGGTCGGG 59.852 63.158 13.56 2.16 46.13 5.14
401 402 1.227556 CCGCTATTTCCCTGGGTCG 60.228 63.158 13.56 7.76 0.00 4.79
402 403 1.148498 CCCGCTATTTCCCTGGGTC 59.852 63.158 13.56 0.00 35.05 4.46
403 404 2.383601 CCCCGCTATTTCCCTGGGT 61.384 63.158 13.56 0.00 38.23 4.51
404 405 1.427072 ATCCCCGCTATTTCCCTGGG 61.427 60.000 6.33 6.33 39.69 4.45
407 408 1.134438 GGGATCCCCGCTATTTCCCT 61.134 60.000 21.42 0.00 42.37 4.20
408 409 1.379146 GGGATCCCCGCTATTTCCC 59.621 63.158 21.42 0.00 39.35 3.97
409 410 1.379146 GGGGATCCCCGCTATTTCC 59.621 63.158 34.54 8.17 46.66 3.13
425 426 2.313427 TTTCAAGGGATCCCGGGGG 61.313 63.158 25.48 15.37 41.95 5.40
426 427 1.076995 GTTTCAAGGGATCCCGGGG 60.077 63.158 25.48 17.86 41.95 5.73
427 428 1.076995 GGTTTCAAGGGATCCCGGG 60.077 63.158 25.48 16.85 41.95 5.73
428 429 0.039035 TTGGTTTCAAGGGATCCCGG 59.961 55.000 25.48 20.76 41.95 5.73
430 431 3.440127 TCATTTGGTTTCAAGGGATCCC 58.560 45.455 24.59 24.59 33.98 3.85
431 432 3.118992 GCTCATTTGGTTTCAAGGGATCC 60.119 47.826 1.92 1.92 33.98 3.36
433 434 2.833943 GGCTCATTTGGTTTCAAGGGAT 59.166 45.455 0.00 0.00 33.98 3.85
434 435 2.247358 GGCTCATTTGGTTTCAAGGGA 58.753 47.619 0.00 0.00 33.98 4.20
435 436 1.276138 GGGCTCATTTGGTTTCAAGGG 59.724 52.381 0.00 0.00 33.98 3.95
437 438 3.308438 CAGGGCTCATTTGGTTTCAAG 57.692 47.619 0.00 0.00 33.98 3.02
831 832 3.091417 GCACATCGTATTTCTTTGCGAC 58.909 45.455 0.00 0.00 36.16 5.19
833 834 3.093574 CAGCACATCGTATTTCTTTGCG 58.906 45.455 0.00 0.00 33.68 4.85
952 964 3.572682 GGGAATTTCTTTCGTCAGGGTTT 59.427 43.478 0.00 0.00 34.98 3.27
1062 1078 1.725066 GAGTTCCGAGAGAGCGAGG 59.275 63.158 0.00 0.00 0.00 4.63
1077 1093 1.007336 GCAATTGACGACCGACGAGT 61.007 55.000 10.34 0.00 45.77 4.18
1083 1099 0.298707 CGATGAGCAATTGACGACCG 59.701 55.000 10.34 2.71 0.00 4.79
1106 1122 1.869774 ATTAGATCAGCAATCGCGCA 58.130 45.000 8.75 0.00 45.49 6.09
1156 1182 1.301087 ACGAACGCCAATCCGTGAA 60.301 52.632 0.00 0.00 41.90 3.18
1232 1258 1.412710 TCCTATCATCCGCACCTTGTC 59.587 52.381 0.00 0.00 0.00 3.18
1285 1311 1.207593 CACCTTTTTCTCCAGCGCG 59.792 57.895 0.00 0.00 0.00 6.86
1310 1336 1.006805 GATCCATCACCGCCTCGAG 60.007 63.158 5.13 5.13 0.00 4.04
1346 2747 2.202623 GAGGTCGGCGCAGTACTG 60.203 66.667 18.93 18.93 0.00 2.74
1400 2801 1.063469 CTCTTTCTCCGAGAGCGAGAC 59.937 57.143 15.72 0.00 40.82 3.36
1401 2802 1.374560 CTCTTTCTCCGAGAGCGAGA 58.625 55.000 15.72 11.60 40.82 4.04
1421 2822 2.543067 ATTTGGCGGAGGGACAGCTC 62.543 60.000 0.00 0.00 39.51 4.09
1428 2829 2.890474 CGTCGATTTGGCGGAGGG 60.890 66.667 0.00 0.00 0.00 4.30
1631 3049 1.941975 CGCATAGTGACCATGAATGCA 59.058 47.619 0.00 0.00 42.36 3.96
1686 3527 6.096987 CCTGTTCTAGGCATACTACTCTGAAA 59.903 42.308 0.00 0.00 40.38 2.69
1859 7501 1.470098 CACATTTCTACTGGCCTGTGC 59.530 52.381 24.33 0.00 0.00 4.57
1881 7524 9.490379 GGAATAAATCAAGGTACTACCATAGTG 57.510 37.037 8.01 0.90 41.95 2.74
1883 7526 9.490379 GTGGAATAAATCAAGGTACTACCATAG 57.510 37.037 8.01 0.00 41.95 2.23
1886 7529 7.260387 TGTGGAATAAATCAAGGTACTACCA 57.740 36.000 8.01 0.00 41.95 3.25
1961 7604 6.448006 CCCTAAGGATGATCAGTTTACTACG 58.552 44.000 0.09 0.00 33.47 3.51
1979 10026 5.685728 AGCTGCTACTTTTATTCCCCTAAG 58.314 41.667 0.00 0.00 0.00 2.18
1981 10028 5.307196 CCTAGCTGCTACTTTTATTCCCCTA 59.693 44.000 5.02 0.00 0.00 3.53
2110 10157 3.939066 TCTAGACAGTCACATCGTCTCA 58.061 45.455 2.66 0.00 40.41 3.27
2201 10353 2.305635 GGTTTGGGATGAAAGGCCATTT 59.694 45.455 5.01 2.21 0.00 2.32
2286 10438 2.957006 GGAGCTAGGACGGACAAATCTA 59.043 50.000 0.00 0.00 0.00 1.98
2319 10471 0.753262 GGCTCCGAGGCAGATAGAAA 59.247 55.000 16.76 0.00 40.97 2.52
2390 10561 9.364653 ACGTGAAGATATCTATAACCCTAAAGT 57.635 33.333 5.46 0.00 0.00 2.66
2430 10606 3.493350 GCTCTCAAGTTCTTGGTGTCTCA 60.493 47.826 11.82 0.00 0.00 3.27
2446 10622 6.112734 TCTTACTGTTTTCACAAAGCTCTCA 58.887 36.000 0.00 0.00 30.36 3.27
2451 10627 7.862372 TGATTGATCTTACTGTTTTCACAAAGC 59.138 33.333 0.00 0.00 30.36 3.51
2495 10671 5.007136 GCTAAATCAGTAACTGCATCCTGTC 59.993 44.000 0.00 0.00 0.00 3.51
2560 10736 3.838244 TCTCAGCACAAGTTACTGGTT 57.162 42.857 0.00 0.00 32.19 3.67
2695 10879 2.758207 TTGAAAGTGGCACGGGGGA 61.758 57.895 12.71 0.00 0.00 4.81
2700 10885 2.842208 TTTGAGTTGAAAGTGGCACG 57.158 45.000 12.71 0.00 0.00 5.34
2701 10886 4.110036 ACTTTTGAGTTGAAAGTGGCAC 57.890 40.909 10.29 10.29 43.58 5.01
2702 10887 4.799564 AACTTTTGAGTTGAAAGTGGCA 57.200 36.364 3.31 0.00 44.24 4.92
2722 10919 6.409234 CCATTCTGCCTACATCCCTACTTTAA 60.409 42.308 0.00 0.00 0.00 1.52
2724 10921 4.141390 CCATTCTGCCTACATCCCTACTTT 60.141 45.833 0.00 0.00 0.00 2.66
2783 11200 8.298140 ACTGTTAAGTGACTACTACAATCAGTC 58.702 37.037 0.00 0.00 39.32 3.51
2784 11201 8.179509 ACTGTTAAGTGACTACTACAATCAGT 57.820 34.615 0.00 0.00 35.69 3.41
2785 11202 8.916654 CAACTGTTAAGTGACTACTACAATCAG 58.083 37.037 0.00 0.00 36.51 2.90
2786 11203 8.635328 TCAACTGTTAAGTGACTACTACAATCA 58.365 33.333 0.00 0.00 36.51 2.57
2855 12204 6.177610 CCCTGAACAATTTACTACTAGCCAA 58.822 40.000 0.00 0.00 0.00 4.52
2892 12241 4.084287 ACCCTGAATAATATACCGAGCGA 58.916 43.478 0.00 0.00 0.00 4.93
2902 12251 9.403583 GATTAACTGGTTTGACCCTGAATAATA 57.596 33.333 0.00 0.00 37.50 0.98
2904 12253 7.466804 AGATTAACTGGTTTGACCCTGAATAA 58.533 34.615 0.00 0.00 37.50 1.40
3012 12693 3.813166 GGCTCTAAACAGTGTGTAGCAAA 59.187 43.478 14.78 0.00 31.69 3.68
3051 12738 0.235665 AGTCACATTGTTTCGCTGCG 59.764 50.000 17.25 17.25 0.00 5.18
3108 12806 1.927174 GAATCGATGGTGAACCTGACG 59.073 52.381 0.00 4.47 36.82 4.35
3128 14538 3.870723 TGAAAGACCATTCACGAAACG 57.129 42.857 0.00 0.00 34.50 3.60
3174 14584 4.143073 CGCGCCACAACTAACACTTTAATA 60.143 41.667 0.00 0.00 0.00 0.98
3231 14641 3.963374 AGACATAACTGCAGCTAGGATGA 59.037 43.478 15.27 0.00 0.00 2.92
3264 14675 0.913451 AATGCCAGGCTCTGAGAGGT 60.913 55.000 14.15 0.00 32.44 3.85
3292 14703 7.061752 ACTATGAAAAATCAAGTGCGTAGTC 57.938 36.000 0.00 0.00 0.00 2.59
3313 14724 6.252995 ACCCCAAAGCAATTCATTTCTACTA 58.747 36.000 0.00 0.00 0.00 1.82
3315 14726 5.405935 ACCCCAAAGCAATTCATTTCTAC 57.594 39.130 0.00 0.00 0.00 2.59
3374 14787 2.671351 GCGATGTTCTCCACTTCTTCGA 60.671 50.000 0.00 0.00 32.12 3.71
3437 14858 7.386851 CCTCTCTTTTCCAAGTGTACTTATCA 58.613 38.462 0.00 0.00 34.28 2.15
3468 14892 6.944234 ATTTAGTAGGGTTGCTAAATCAGC 57.056 37.500 5.25 0.00 44.03 4.26
3575 15001 5.768454 TCTGGGCTCCCACCTATATATAT 57.232 43.478 2.93 0.00 41.89 0.86
3576 15002 5.042600 ACATCTGGGCTCCCACCTATATATA 60.043 44.000 2.93 0.00 41.89 0.86
3577 15003 4.265492 ACATCTGGGCTCCCACCTATATAT 60.265 45.833 2.93 0.00 41.89 0.86
3578 15004 3.079072 ACATCTGGGCTCCCACCTATATA 59.921 47.826 2.93 0.00 41.89 0.86
3579 15005 2.157942 ACATCTGGGCTCCCACCTATAT 60.158 50.000 2.93 0.00 41.89 0.86
3580 15006 1.223077 ACATCTGGGCTCCCACCTATA 59.777 52.381 2.93 0.00 41.89 1.31
3581 15007 0.029681 ACATCTGGGCTCCCACCTAT 60.030 55.000 2.93 0.00 41.89 2.57
3639 15066 4.004982 GCCCACGAATTTTAACTGGAGTA 58.995 43.478 0.00 0.00 0.00 2.59
3643 15070 3.669557 CGAAGCCCACGAATTTTAACTGG 60.670 47.826 0.00 0.00 0.00 4.00
3645 15072 2.486592 CCGAAGCCCACGAATTTTAACT 59.513 45.455 0.00 0.00 0.00 2.24
3661 15088 3.839432 GGAGACCCCGAGCCGAAG 61.839 72.222 0.00 0.00 0.00 3.79
3690 15124 5.613358 CAGGAACCCTGCGAAATTATATC 57.387 43.478 0.00 0.00 45.13 1.63
3703 15435 1.285078 GTCCAATAAGGCAGGAACCCT 59.715 52.381 0.00 0.00 37.29 4.34
3792 15579 1.684983 CATGCAACATCCCCTCCATTC 59.315 52.381 0.00 0.00 0.00 2.67
3976 15770 4.207955 TCCGAGATGTTCATAGCTACACT 58.792 43.478 0.00 0.00 0.00 3.55
3996 15790 1.603802 CCCACATGTTCGCATACATCC 59.396 52.381 0.00 0.00 36.64 3.51
4010 15804 3.814504 ATCAAACCTCAGAACCCACAT 57.185 42.857 0.00 0.00 0.00 3.21
4023 15817 3.181514 GCAATGCAAGCATGAATCAAACC 60.182 43.478 8.50 0.00 36.68 3.27
4026 15820 3.194755 AGAGCAATGCAAGCATGAATCAA 59.805 39.130 8.35 0.00 36.68 2.57
4064 15859 4.968812 AACGATGTGATGATTGCATTCA 57.031 36.364 13.30 13.30 34.11 2.57
4071 15866 7.987458 ACCAGTAATAGAAACGATGTGATGATT 59.013 33.333 0.00 0.00 0.00 2.57
4155 15950 9.066892 TGGACAGCTTAAATTAATCATCCATAC 57.933 33.333 7.89 0.00 0.00 2.39
4204 15999 0.890542 AGCGAAACTGCATTGCTGGA 60.891 50.000 18.21 0.00 37.31 3.86
4205 16000 0.038892 AAGCGAAACTGCATTGCTGG 60.039 50.000 18.21 9.87 35.77 4.85
4206 16001 1.774639 AAAGCGAAACTGCATTGCTG 58.225 45.000 13.31 13.31 35.77 4.41
4274 18588 5.044919 ACTTCTCAATCCCCACACATATTGA 60.045 40.000 0.00 0.00 36.32 2.57
4305 18619 7.450074 TCTTGAAGTTGAATAGTTCTGCCTTA 58.550 34.615 0.00 0.00 37.15 2.69
4314 18649 5.489792 TCTGCCTCTTGAAGTTGAATAGT 57.510 39.130 0.00 0.00 0.00 2.12
4356 18691 3.895232 ATTATGTGGAACGAGCTCACT 57.105 42.857 15.40 0.00 42.39 3.41
4359 18694 4.210120 CAGCTAATTATGTGGAACGAGCTC 59.790 45.833 2.73 2.73 42.39 4.09
4451 18786 7.094420 GGGCTTGTATTTTTGCCAATTTATTGT 60.094 33.333 5.21 0.00 46.53 2.71
4452 18787 7.121020 AGGGCTTGTATTTTTGCCAATTTATTG 59.879 33.333 5.21 0.00 46.53 1.90
4460 18921 2.298729 GTGAGGGCTTGTATTTTTGCCA 59.701 45.455 5.21 0.00 46.53 4.92
4524 18985 1.993391 GGGAGGGAACGTGGGATCA 60.993 63.158 0.00 0.00 0.00 2.92
4532 18993 1.069823 CATCAGATCAGGGAGGGAACG 59.930 57.143 0.00 0.00 0.00 3.95
4635 19150 7.618512 TCCCTGTGAAGCTTAACTAGTTACTAT 59.381 37.037 14.96 2.37 0.00 2.12
4686 19201 1.628340 TCACACCTTGATGTACCTGGG 59.372 52.381 0.00 0.00 0.00 4.45
4694 19209 4.198028 TCACATCTCTCACACCTTGATG 57.802 45.455 0.00 0.00 39.99 3.07
4776 19291 1.952193 CCTGTTTGTGCCCTTTTTGG 58.048 50.000 0.00 0.00 0.00 3.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.