Multiple sequence alignment - TraesCS2B01G461800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G461800 chr2B 100.000 3455 0 0 1 3455 655307417 655303963 0.000000e+00 6381.0
1 TraesCS2B01G461800 chr2D 85.171 1578 102 43 220 1721 548273909 548272388 0.000000e+00 1496.0
2 TraesCS2B01G461800 chr2D 85.487 944 99 24 1897 2817 548272133 548271205 0.000000e+00 950.0
3 TraesCS2B01G461800 chr2D 83.478 345 33 8 3135 3455 548270019 548269675 2.020000e-77 300.0
4 TraesCS2B01G461800 chr2D 87.821 156 15 4 1 154 489284494 489284341 2.740000e-41 180.0
5 TraesCS2B01G461800 chr2D 92.593 81 5 1 2909 2989 548271178 548271099 7.840000e-22 115.0
6 TraesCS2B01G461800 chr2D 81.208 149 15 8 1747 1894 548272387 548272251 1.310000e-19 108.0
7 TraesCS2B01G461800 chr2A 85.568 1365 89 42 125 1426 691481276 691479957 0.000000e+00 1330.0
8 TraesCS2B01G461800 chr2A 86.345 476 52 6 1836 2306 691479274 691478807 1.110000e-139 507.0
9 TraesCS2B01G461800 chr2A 93.907 279 14 1 1443 1718 145270782 145271060 5.330000e-113 418.0
10 TraesCS2B01G461800 chr2A 94.191 241 13 1 2354 2594 691478802 691478563 1.960000e-97 366.0
11 TraesCS2B01G461800 chr2A 82.335 334 42 11 3052 3370 691477025 691476694 1.220000e-69 274.0
12 TraesCS2B01G461800 chr2A 84.354 294 24 12 2594 2881 691478321 691478044 5.680000e-68 268.0
13 TraesCS2B01G461800 chr2A 96.667 120 4 0 1492 1611 39436412 39436531 2.100000e-47 200.0
14 TraesCS2B01G461800 chr2A 86.111 180 4 5 1445 1624 691479790 691479632 1.270000e-39 174.0
15 TraesCS2B01G461800 chr1D 88.312 385 16 16 1443 1824 431531690 431532048 5.300000e-118 435.0
16 TraesCS2B01G461800 chr7B 93.190 279 15 4 1443 1718 465306959 465307236 1.150000e-109 407.0
17 TraesCS2B01G461800 chr6A 93.798 129 6 2 1 128 458217837 458217710 3.520000e-45 193.0
18 TraesCS2B01G461800 chr1A 92.537 134 7 3 1 132 90767677 90767545 4.550000e-44 189.0
19 TraesCS2B01G461800 chr3D 88.535 157 15 3 1 156 98843618 98843464 1.640000e-43 187.0
20 TraesCS2B01G461800 chr3D 91.912 136 8 3 1 135 556141015 556141148 1.640000e-43 187.0
21 TraesCS2B01G461800 chr3D 87.898 157 16 3 1 156 320601723 320601877 7.620000e-42 182.0
22 TraesCS2B01G461800 chr7D 91.852 135 8 3 1 134 89521159 89521291 5.890000e-43 185.0
23 TraesCS2B01G461800 chr3B 88.158 152 15 3 1 151 158051083 158050934 9.850000e-41 178.0
24 TraesCS2B01G461800 chr6D 87.261 157 17 3 1 156 353570253 353570099 3.540000e-40 176.0
25 TraesCS2B01G461800 chr4D 100.000 31 0 0 1717 1747 374291388 374291418 1.340000e-04 58.4
26 TraesCS2B01G461800 chr6B 100.000 28 0 0 1712 1739 28632047 28632020 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G461800 chr2B 655303963 655307417 3454 True 6381.0 6381 100.0000 1 3455 1 chr2B.!!$R1 3454
1 TraesCS2B01G461800 chr2D 548269675 548273909 4234 True 593.8 1496 85.5874 220 3455 5 chr2D.!!$R2 3235
2 TraesCS2B01G461800 chr2A 691476694 691481276 4582 True 486.5 1330 86.4840 125 3370 6 chr2A.!!$R1 3245

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
814 824 1.293683 TAGGGCCCATTTTCCCCTCC 61.294 60.0 27.56 0.0 46.08 4.30 F
1698 1925 0.396435 ACACCGTGGATGCTCAAAGA 59.604 50.0 3.03 0.0 0.00 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2256 2845 0.250684 TGCATTTCCCAACAGCTCGA 60.251 50.0 0.00 0.0 0.00 4.04 R
3382 6010 0.179148 TACATCGCGCAATGACGAGT 60.179 50.0 16.69 3.3 42.31 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.862325 TTTCAAATGGACTACAACATACAGAT 57.138 30.769 0.00 0.00 0.00 2.90
26 27 7.848223 TCAAATGGACTACAACATACAGATG 57.152 36.000 0.00 0.00 39.16 2.90
28 29 8.536175 TCAAATGGACTACAACATACAGATGTA 58.464 33.333 0.00 0.00 45.93 2.29
29 30 9.330063 CAAATGGACTACAACATACAGATGTAT 57.670 33.333 0.00 0.00 45.93 2.29
45 46 8.414629 ACAGATGTATGCAGACATATTCTAGA 57.585 34.615 25.90 0.00 40.18 2.43
46 47 8.522003 ACAGATGTATGCAGACATATTCTAGAG 58.478 37.037 25.90 12.62 40.18 2.43
47 48 8.522003 CAGATGTATGCAGACATATTCTAGAGT 58.478 37.037 25.90 1.54 40.18 3.24
48 49 8.522003 AGATGTATGCAGACATATTCTAGAGTG 58.478 37.037 25.90 0.00 40.18 3.51
49 50 7.588497 TGTATGCAGACATATTCTAGAGTGT 57.412 36.000 10.75 7.08 40.79 3.55
50 51 8.691661 TGTATGCAGACATATTCTAGAGTGTA 57.308 34.615 10.75 0.00 40.79 2.90
51 52 8.787852 TGTATGCAGACATATTCTAGAGTGTAG 58.212 37.037 10.75 1.60 40.79 2.74
52 53 9.004717 GTATGCAGACATATTCTAGAGTGTAGA 57.995 37.037 6.60 0.00 40.79 2.59
53 54 8.648698 ATGCAGACATATTCTAGAGTGTAGAT 57.351 34.615 0.00 0.00 33.67 1.98
54 55 8.470657 TGCAGACATATTCTAGAGTGTAGATT 57.529 34.615 0.00 0.00 31.12 2.40
55 56 8.572185 TGCAGACATATTCTAGAGTGTAGATTC 58.428 37.037 0.00 0.00 31.12 2.52
56 57 8.572185 GCAGACATATTCTAGAGTGTAGATTCA 58.428 37.037 0.00 0.00 31.12 2.57
57 58 9.891828 CAGACATATTCTAGAGTGTAGATTCAC 57.108 37.037 0.00 0.00 34.24 3.18
58 59 9.860650 AGACATATTCTAGAGTGTAGATTCACT 57.139 33.333 0.00 0.00 41.09 3.41
69 70 7.913674 AGTGTAGATTCACTCATTTTTCTCC 57.086 36.000 0.00 0.00 44.07 3.71
70 71 6.591834 AGTGTAGATTCACTCATTTTTCTCCG 59.408 38.462 0.00 0.00 44.07 4.63
71 72 6.369065 GTGTAGATTCACTCATTTTTCTCCGT 59.631 38.462 0.00 0.00 35.68 4.69
72 73 5.869753 AGATTCACTCATTTTTCTCCGTG 57.130 39.130 0.00 0.00 0.00 4.94
73 74 5.308825 AGATTCACTCATTTTTCTCCGTGT 58.691 37.500 0.00 0.00 0.00 4.49
74 75 4.811555 TTCACTCATTTTTCTCCGTGTG 57.188 40.909 0.00 0.00 0.00 3.82
75 76 3.804036 TCACTCATTTTTCTCCGTGTGT 58.196 40.909 0.00 0.00 0.00 3.72
76 77 4.951254 TCACTCATTTTTCTCCGTGTGTA 58.049 39.130 0.00 0.00 0.00 2.90
77 78 4.988540 TCACTCATTTTTCTCCGTGTGTAG 59.011 41.667 0.00 0.00 0.00 2.74
78 79 4.750098 CACTCATTTTTCTCCGTGTGTAGT 59.250 41.667 0.00 0.00 0.00 2.73
79 80 4.989168 ACTCATTTTTCTCCGTGTGTAGTC 59.011 41.667 0.00 0.00 0.00 2.59
80 81 4.951254 TCATTTTTCTCCGTGTGTAGTCA 58.049 39.130 0.00 0.00 0.00 3.41
81 82 4.748102 TCATTTTTCTCCGTGTGTAGTCAC 59.252 41.667 0.00 0.00 44.08 3.67
82 83 4.395959 TTTTTCTCCGTGTGTAGTCACT 57.604 40.909 0.00 0.00 44.14 3.41
83 84 4.395959 TTTTCTCCGTGTGTAGTCACTT 57.604 40.909 0.00 0.00 44.14 3.16
84 85 3.364889 TTCTCCGTGTGTAGTCACTTG 57.635 47.619 0.00 0.00 44.14 3.16
85 86 2.304092 TCTCCGTGTGTAGTCACTTGT 58.696 47.619 0.00 0.00 44.14 3.16
86 87 2.691526 TCTCCGTGTGTAGTCACTTGTT 59.308 45.455 0.00 0.00 44.14 2.83
87 88 2.794910 CTCCGTGTGTAGTCACTTGTTG 59.205 50.000 0.00 0.00 44.14 3.33
88 89 1.864711 CCGTGTGTAGTCACTTGTTGG 59.135 52.381 0.00 0.00 44.14 3.77
89 90 2.482316 CCGTGTGTAGTCACTTGTTGGA 60.482 50.000 0.00 0.00 44.14 3.53
90 91 3.191669 CGTGTGTAGTCACTTGTTGGAA 58.808 45.455 0.00 0.00 44.14 3.53
91 92 3.807622 CGTGTGTAGTCACTTGTTGGAAT 59.192 43.478 0.00 0.00 44.14 3.01
92 93 4.084537 CGTGTGTAGTCACTTGTTGGAATC 60.085 45.833 0.00 0.00 44.14 2.52
93 94 5.057149 GTGTGTAGTCACTTGTTGGAATCT 58.943 41.667 0.00 0.00 44.14 2.40
94 95 5.177696 GTGTGTAGTCACTTGTTGGAATCTC 59.822 44.000 0.00 0.00 44.14 2.75
95 96 5.070446 TGTGTAGTCACTTGTTGGAATCTCT 59.930 40.000 0.00 0.00 44.14 3.10
96 97 6.266786 TGTGTAGTCACTTGTTGGAATCTCTA 59.733 38.462 0.00 0.00 44.14 2.43
97 98 7.152645 GTGTAGTCACTTGTTGGAATCTCTAA 58.847 38.462 0.00 0.00 40.98 2.10
98 99 7.656137 GTGTAGTCACTTGTTGGAATCTCTAAA 59.344 37.037 0.00 0.00 40.98 1.85
99 100 8.208224 TGTAGTCACTTGTTGGAATCTCTAAAA 58.792 33.333 0.00 0.00 0.00 1.52
100 101 9.052759 GTAGTCACTTGTTGGAATCTCTAAAAA 57.947 33.333 0.00 0.00 0.00 1.94
139 140 3.722147 GGAGGGAGTATATATGCATGCG 58.278 50.000 14.09 0.00 0.00 4.73
247 249 7.197071 TGCAAGAAACAAATGACTACGTTAT 57.803 32.000 0.00 0.00 0.00 1.89
274 277 4.708726 AAATGAACATGCTTAGCAGGAC 57.291 40.909 25.69 17.48 43.36 3.85
288 291 1.338484 GCAGGACTCTGACTCATGCAA 60.338 52.381 15.66 0.00 43.37 4.08
326 332 4.263905 ACATGATCTTTTGGGCCTAACTGA 60.264 41.667 0.00 3.05 0.00 3.41
346 352 3.772572 TGACTAAGTATGGCTGGTTGCTA 59.227 43.478 0.00 0.00 42.39 3.49
459 466 8.576936 TTCGTTCCATACATAAAACCAAAAAC 57.423 30.769 0.00 0.00 0.00 2.43
495 502 8.643752 CACATAAATGGTTCGGTTTGTTTTATC 58.356 33.333 0.00 0.00 0.00 1.75
515 522 7.931578 TTATCTCGGTATGATTTGTTGGTTT 57.068 32.000 0.00 0.00 0.00 3.27
723 732 1.963338 GGTGCATATGGGCTCGAGC 60.963 63.158 29.38 29.38 41.14 5.03
742 751 2.975410 CTCACAAGAGCATTTTCGCA 57.025 45.000 0.00 0.00 34.61 5.10
752 762 6.630444 AGAGCATTTTCGCATTTATCTCAT 57.370 33.333 0.00 0.00 0.00 2.90
757 767 7.223387 AGCATTTTCGCATTTATCTCATTTTCC 59.777 33.333 0.00 0.00 0.00 3.13
764 774 7.939039 TCGCATTTATCTCATTTTCCCTCTAAT 59.061 33.333 0.00 0.00 0.00 1.73
814 824 1.293683 TAGGGCCCATTTTCCCCTCC 61.294 60.000 27.56 0.00 46.08 4.30
892 902 3.447025 GATCCGCGAAGGTGAGGGG 62.447 68.421 8.23 0.00 41.99 4.79
905 917 1.745489 GAGGGGTACAAAGCAGCCG 60.745 63.158 0.00 0.00 34.25 5.52
906 918 2.180159 GAGGGGTACAAAGCAGCCGA 62.180 60.000 0.00 0.00 34.25 5.54
907 919 1.302993 GGGGTACAAAGCAGCCGAA 60.303 57.895 0.00 0.00 34.25 4.30
950 974 1.342175 ACGAACCCTAGCTAGGCTCTT 60.342 52.381 31.33 21.19 42.26 2.85
996 1023 7.367285 CGAAGAAGAAGAAGAGAAGAAGAAGA 58.633 38.462 0.00 0.00 0.00 2.87
1234 1311 5.473039 GTTCCCTCATCAAAAGATTTGTGG 58.527 41.667 3.06 2.74 0.00 4.17
1244 1321 6.321717 TCAAAAGATTTGTGGATGTATTCGC 58.678 36.000 3.06 0.00 0.00 4.70
1252 1329 4.323417 TGTGGATGTATTCGCTGTTCTTT 58.677 39.130 0.00 0.00 0.00 2.52
1280 1357 2.640316 AAATATCCCTTGAGGCCGTC 57.360 50.000 0.00 0.00 34.51 4.79
1294 1371 1.987855 CCGTCTGGTTAGGGGCTCA 60.988 63.158 0.00 0.00 0.00 4.26
1324 1401 4.379082 GGCGTTTGTTCGATTAGATTGGTT 60.379 41.667 0.00 0.00 0.00 3.67
1418 1497 6.038603 GGCTAATCATAAATGAGCACACAAGA 59.961 38.462 0.00 0.00 40.64 3.02
1526 1753 3.783111 GCAATCTGCAGCAACTTTTTC 57.217 42.857 9.47 0.00 44.26 2.29
1527 1754 3.387397 GCAATCTGCAGCAACTTTTTCT 58.613 40.909 9.47 0.00 44.26 2.52
1529 1756 4.984161 GCAATCTGCAGCAACTTTTTCTTA 59.016 37.500 9.47 0.00 44.26 2.10
1530 1757 5.636543 GCAATCTGCAGCAACTTTTTCTTAT 59.363 36.000 9.47 0.00 44.26 1.73
1531 1758 6.146673 GCAATCTGCAGCAACTTTTTCTTATT 59.853 34.615 9.47 0.00 44.26 1.40
1532 1759 7.620806 GCAATCTGCAGCAACTTTTTCTTATTC 60.621 37.037 9.47 0.00 44.26 1.75
1533 1760 5.451908 TCTGCAGCAACTTTTTCTTATTCG 58.548 37.500 9.47 0.00 0.00 3.34
1635 1862 9.766277 GTCAAATTGTCTTGCAAACAAAAATAA 57.234 25.926 22.22 10.75 39.84 1.40
1643 1870 9.683651 GTCTTGCAAACAAAAATAACTGTTTAC 57.316 29.630 0.00 0.00 42.41 2.01
1667 1894 1.457346 AAGAGCATGTGCAGCCTTAC 58.543 50.000 7.83 0.00 45.16 2.34
1668 1895 0.617413 AGAGCATGTGCAGCCTTACT 59.383 50.000 7.83 0.00 45.16 2.24
1694 1921 1.346395 ACTAAACACCGTGGATGCTCA 59.654 47.619 3.03 0.00 0.00 4.26
1698 1925 0.396435 ACACCGTGGATGCTCAAAGA 59.604 50.000 3.03 0.00 0.00 2.52
1722 1949 8.957466 AGATTGTAAAGCTTGTTTAATACTCCC 58.043 33.333 0.00 0.00 41.66 4.30
1723 1950 8.879427 ATTGTAAAGCTTGTTTAATACTCCCT 57.121 30.769 0.00 0.00 0.00 4.20
1724 1951 7.916914 TGTAAAGCTTGTTTAATACTCCCTC 57.083 36.000 0.00 0.00 0.00 4.30
1725 1952 7.455058 TGTAAAGCTTGTTTAATACTCCCTCA 58.545 34.615 0.00 0.00 0.00 3.86
1726 1953 7.606456 TGTAAAGCTTGTTTAATACTCCCTCAG 59.394 37.037 0.00 0.00 0.00 3.35
1727 1954 5.763876 AGCTTGTTTAATACTCCCTCAGT 57.236 39.130 0.00 0.00 39.41 3.41
1728 1955 6.128138 AGCTTGTTTAATACTCCCTCAGTT 57.872 37.500 0.00 0.00 36.43 3.16
1729 1956 6.174049 AGCTTGTTTAATACTCCCTCAGTTC 58.826 40.000 0.00 0.00 36.43 3.01
1730 1957 5.354513 GCTTGTTTAATACTCCCTCAGTTCC 59.645 44.000 0.00 0.00 36.43 3.62
1731 1958 6.442541 TTGTTTAATACTCCCTCAGTTCCA 57.557 37.500 0.00 0.00 36.43 3.53
1732 1959 6.636454 TGTTTAATACTCCCTCAGTTCCAT 57.364 37.500 0.00 0.00 36.43 3.41
1733 1960 7.743116 TGTTTAATACTCCCTCAGTTCCATA 57.257 36.000 0.00 0.00 36.43 2.74
1734 1961 8.153221 TGTTTAATACTCCCTCAGTTCCATAA 57.847 34.615 0.00 0.00 36.43 1.90
1735 1962 8.778059 TGTTTAATACTCCCTCAGTTCCATAAT 58.222 33.333 0.00 0.00 36.43 1.28
1736 1963 9.057089 GTTTAATACTCCCTCAGTTCCATAATG 57.943 37.037 0.00 0.00 36.43 1.90
1737 1964 6.831664 AATACTCCCTCAGTTCCATAATGT 57.168 37.500 0.00 0.00 36.43 2.71
1738 1965 7.931015 AATACTCCCTCAGTTCCATAATGTA 57.069 36.000 0.00 0.00 36.43 2.29
1739 1966 7.931015 ATACTCCCTCAGTTCCATAATGTAA 57.069 36.000 0.00 0.00 36.43 2.41
1740 1967 6.240549 ACTCCCTCAGTTCCATAATGTAAG 57.759 41.667 0.00 0.00 26.56 2.34
1741 1968 5.964477 ACTCCCTCAGTTCCATAATGTAAGA 59.036 40.000 0.00 0.00 26.56 2.10
1742 1969 6.127026 ACTCCCTCAGTTCCATAATGTAAGAC 60.127 42.308 0.00 0.00 26.56 3.01
1743 1970 5.050490 CCCTCAGTTCCATAATGTAAGACG 58.950 45.833 0.00 0.00 0.00 4.18
1744 1971 5.395324 CCCTCAGTTCCATAATGTAAGACGT 60.395 44.000 0.00 0.00 0.00 4.34
1745 1972 6.106673 CCTCAGTTCCATAATGTAAGACGTT 58.893 40.000 0.00 0.00 0.00 3.99
1795 2022 7.605410 ATTATTGTGGTGGTCTTAAGTTACG 57.395 36.000 1.63 0.00 0.00 3.18
1803 2030 4.450080 GTGGTCTTAAGTTACGGTGGAAAG 59.550 45.833 1.63 0.00 0.00 2.62
1804 2031 3.434641 GGTCTTAAGTTACGGTGGAAAGC 59.565 47.826 1.63 0.00 0.00 3.51
1820 2047 7.645340 CGGTGGAAAGCTTATTTGATATTCTTG 59.355 37.037 0.00 0.00 0.00 3.02
1824 2051 9.688592 GGAAAGCTTATTTGATATTCTTGGATG 57.311 33.333 0.00 0.00 0.00 3.51
1825 2052 9.688592 GAAAGCTTATTTGATATTCTTGGATGG 57.311 33.333 0.00 0.00 0.00 3.51
1826 2053 8.773033 AAGCTTATTTGATATTCTTGGATGGT 57.227 30.769 0.00 0.00 0.00 3.55
1827 2054 9.866655 AAGCTTATTTGATATTCTTGGATGGTA 57.133 29.630 0.00 0.00 0.00 3.25
1834 2287 6.763355 TGATATTCTTGGATGGTAAGCTCTC 58.237 40.000 0.00 0.00 0.00 3.20
1880 2349 7.497595 TCTTGTAAGTGTTTTCTCTGCTCTTA 58.502 34.615 0.00 0.00 0.00 2.10
1894 2478 8.375608 TCTCTGCTCTTATTTGAATATGAAGC 57.624 34.615 0.00 0.00 0.00 3.86
1970 2555 2.816087 GCTGTTGGAGAATTGCTGAGAA 59.184 45.455 0.00 0.00 0.00 2.87
1972 2557 4.791974 CTGTTGGAGAATTGCTGAGAAAC 58.208 43.478 0.00 0.00 0.00 2.78
1973 2558 4.464008 TGTTGGAGAATTGCTGAGAAACT 58.536 39.130 0.00 0.00 0.00 2.66
1980 2565 7.231317 TGGAGAATTGCTGAGAAACTAACAAAT 59.769 33.333 0.00 0.00 0.00 2.32
1995 2580 9.878599 AAACTAACAAATTCGTGACTTTATCTG 57.121 29.630 0.00 0.00 0.00 2.90
2013 2598 3.450904 TCTGAGGGGCTGTGTACTAAAT 58.549 45.455 0.00 0.00 0.00 1.40
2018 2603 5.013287 TGAGGGGCTGTGTACTAAATAAACA 59.987 40.000 0.00 0.00 29.82 2.83
2022 2607 5.005094 GGCTGTGTACTAAATAAACACCCA 58.995 41.667 2.69 0.00 42.22 4.51
2024 2609 6.404293 GGCTGTGTACTAAATAAACACCCATG 60.404 42.308 2.69 0.00 42.22 3.66
2032 2617 7.696017 ACTAAATAAACACCCATGGTAGTTCT 58.304 34.615 16.62 10.87 32.11 3.01
2046 2631 6.560003 TGGTAGTTCTGTGATTGATGGTAT 57.440 37.500 0.00 0.00 0.00 2.73
2047 2632 6.957631 TGGTAGTTCTGTGATTGATGGTATT 58.042 36.000 0.00 0.00 0.00 1.89
2053 2638 6.484364 TCTGTGATTGATGGTATTAGCTCA 57.516 37.500 0.00 0.00 0.00 4.26
2093 2678 5.613329 CCTTTGGTAGTGTACACTTGGTTA 58.387 41.667 32.15 12.49 42.54 2.85
2115 2700 3.565307 ACCCACATGGCAGTTTATATGG 58.435 45.455 0.00 0.00 37.83 2.74
2121 2706 5.299028 CACATGGCAGTTTATATGGCTACAA 59.701 40.000 0.00 0.00 43.25 2.41
2186 2771 8.893219 AGCTTGTTCTTATCGATTAATCATCA 57.107 30.769 15.57 0.00 0.00 3.07
2217 2802 8.194769 CACACTTGTGTTCCCTAATTTTTAACT 58.805 33.333 3.39 0.00 40.96 2.24
2218 2803 8.194769 ACACTTGTGTTCCCTAATTTTTAACTG 58.805 33.333 0.00 0.00 0.00 3.16
2219 2804 7.651704 CACTTGTGTTCCCTAATTTTTAACTGG 59.348 37.037 0.00 0.00 0.00 4.00
2224 2809 7.013834 TGTTCCCTAATTTTTAACTGGGTCAT 58.986 34.615 0.00 0.00 36.23 3.06
2235 2820 3.876309 ACTGGGTCATTGTTTAGGTGT 57.124 42.857 0.00 0.00 0.00 4.16
2237 2822 4.142038 ACTGGGTCATTGTTTAGGTGTTC 58.858 43.478 0.00 0.00 0.00 3.18
2241 2826 5.659079 TGGGTCATTGTTTAGGTGTTCTTTT 59.341 36.000 0.00 0.00 0.00 2.27
2243 2828 7.342284 TGGGTCATTGTTTAGGTGTTCTTTTTA 59.658 33.333 0.00 0.00 0.00 1.52
2244 2829 7.650504 GGGTCATTGTTTAGGTGTTCTTTTTAC 59.349 37.037 0.00 0.00 0.00 2.01
2245 2830 7.377662 GGTCATTGTTTAGGTGTTCTTTTTACG 59.622 37.037 0.00 0.00 0.00 3.18
2248 2837 6.439675 TGTTTAGGTGTTCTTTTTACGCTT 57.560 33.333 0.00 0.00 0.00 4.68
2249 2838 6.854778 TGTTTAGGTGTTCTTTTTACGCTTT 58.145 32.000 0.00 0.00 0.00 3.51
2256 2845 5.912955 GTGTTCTTTTTACGCTTTGCACTAT 59.087 36.000 0.00 0.00 0.00 2.12
2257 2846 6.086371 GTGTTCTTTTTACGCTTTGCACTATC 59.914 38.462 0.00 0.00 0.00 2.08
2262 2851 0.108615 ACGCTTTGCACTATCGAGCT 60.109 50.000 0.00 0.00 0.00 4.09
2267 2856 1.725641 TTGCACTATCGAGCTGTTGG 58.274 50.000 0.00 0.00 0.00 3.77
2268 2857 0.108186 TGCACTATCGAGCTGTTGGG 60.108 55.000 0.00 0.00 0.00 4.12
2306 2896 4.886579 AGACCCATTTGCATCAAACTTTC 58.113 39.130 0.00 0.00 36.13 2.62
2308 2898 5.012354 AGACCCATTTGCATCAAACTTTCAT 59.988 36.000 0.00 0.00 36.13 2.57
2315 2908 3.507233 TGCATCAAACTTTCATGACTCCC 59.493 43.478 0.00 0.00 0.00 4.30
2318 2911 5.509501 GCATCAAACTTTCATGACTCCCAAA 60.510 40.000 0.00 0.00 0.00 3.28
2319 2912 6.514947 CATCAAACTTTCATGACTCCCAAAA 58.485 36.000 0.00 0.00 0.00 2.44
2323 2916 3.896888 ACTTTCATGACTCCCAAAATGCA 59.103 39.130 0.00 0.00 0.00 3.96
2330 2923 6.211184 TCATGACTCCCAAAATGCAGTAAATT 59.789 34.615 0.00 0.00 0.00 1.82
2337 2930 7.098477 TCCCAAAATGCAGTAAATTTGATGAG 58.902 34.615 0.00 0.00 35.34 2.90
2338 2931 6.183360 CCCAAAATGCAGTAAATTTGATGAGC 60.183 38.462 0.00 0.00 35.34 4.26
2343 2936 3.688272 CAGTAAATTTGATGAGCGCTGG 58.312 45.455 18.48 0.00 0.00 4.85
2350 2943 2.336945 TGATGAGCGCTGGATTCAAT 57.663 45.000 18.48 0.00 0.00 2.57
2351 2944 2.216046 TGATGAGCGCTGGATTCAATC 58.784 47.619 18.48 6.83 0.00 2.67
2356 2949 1.409064 AGCGCTGGATTCAATCGACTA 59.591 47.619 10.39 0.00 0.00 2.59
2365 2958 5.051153 GGATTCAATCGACTAACTCCCTTC 58.949 45.833 0.00 0.00 0.00 3.46
2372 2965 2.609737 CGACTAACTCCCTTCGCTTTGT 60.610 50.000 0.00 0.00 0.00 2.83
2406 2999 0.396435 TGGAAGAGCAGAAGCCGAAA 59.604 50.000 0.00 0.00 43.56 3.46
2457 3050 2.677836 GCCTGTAATGAACGAATGAGCA 59.322 45.455 0.00 0.00 0.00 4.26
2507 3100 2.635714 CTAGCTGCCAATCATGTGACA 58.364 47.619 0.00 0.00 0.00 3.58
2509 3102 1.171308 GCTGCCAATCATGTGACACT 58.829 50.000 7.20 0.00 0.00 3.55
2510 3103 1.131883 GCTGCCAATCATGTGACACTC 59.868 52.381 7.20 0.00 0.00 3.51
2511 3104 1.741706 CTGCCAATCATGTGACACTCC 59.258 52.381 7.20 0.00 0.00 3.85
2538 3131 6.734137 TGTTAAAATGAGTGGTGTGAACATC 58.266 36.000 0.00 0.00 0.00 3.06
2655 3495 9.376075 GAGATTTTATCTTGTGATGTCTTCTCA 57.624 33.333 0.00 0.00 40.38 3.27
2667 3507 4.290711 TGTCTTCTCATGGAGCATTCAA 57.709 40.909 0.00 0.00 0.00 2.69
2729 3570 3.754188 GCACCTTCTTTGCTGTCTATG 57.246 47.619 0.00 0.00 37.00 2.23
2741 3588 5.343307 TGCTGTCTATGCTATTTCTCACA 57.657 39.130 0.00 0.00 0.00 3.58
2768 3615 6.112734 TCTTCCTTTGCGAATCAAGCTATTA 58.887 36.000 0.00 0.00 35.84 0.98
2769 3616 5.734855 TCCTTTGCGAATCAAGCTATTAC 57.265 39.130 0.00 0.00 35.84 1.89
2770 3617 5.428253 TCCTTTGCGAATCAAGCTATTACT 58.572 37.500 0.00 0.00 35.84 2.24
2771 3618 5.523916 TCCTTTGCGAATCAAGCTATTACTC 59.476 40.000 0.00 0.00 35.84 2.59
2772 3619 5.389642 TTTGCGAATCAAGCTATTACTCG 57.610 39.130 0.00 0.00 35.84 4.18
2785 3633 3.851976 ATTACTCGCGTTCTGTCTCTT 57.148 42.857 5.77 0.00 0.00 2.85
2788 3636 3.851976 ACTCGCGTTCTGTCTCTTAAT 57.148 42.857 5.77 0.00 0.00 1.40
2797 3645 8.663025 CGCGTTCTGTCTCTTAATATATACCTA 58.337 37.037 0.00 0.00 0.00 3.08
2821 3669 0.684479 TCATCTGCACTCGGTAGCCT 60.684 55.000 0.00 0.00 0.00 4.58
2823 3671 1.409064 CATCTGCACTCGGTAGCCTTA 59.591 52.381 0.00 0.00 0.00 2.69
2846 3694 6.597832 ATGCTTATCTCAGGGTAGATGTAC 57.402 41.667 0.00 0.00 36.85 2.90
2847 3695 5.706447 TGCTTATCTCAGGGTAGATGTACT 58.294 41.667 0.00 0.00 36.85 2.73
2850 3698 6.435904 GCTTATCTCAGGGTAGATGTACTGAT 59.564 42.308 0.00 0.77 39.06 2.90
2864 3712 7.095910 AGATGTACTGATGAAGTTCAGAACTG 58.904 38.462 16.85 5.62 44.88 3.16
2883 3731 3.951037 ACTGGTCAAGTTGTAACATTGCA 59.049 39.130 2.11 0.00 34.57 4.08
2884 3732 4.036734 ACTGGTCAAGTTGTAACATTGCAG 59.963 41.667 2.11 0.94 34.57 4.41
2885 3733 3.317711 TGGTCAAGTTGTAACATTGCAGG 59.682 43.478 2.11 0.00 0.00 4.85
2886 3734 3.317993 GGTCAAGTTGTAACATTGCAGGT 59.682 43.478 2.11 0.00 0.00 4.00
2887 3735 4.202111 GGTCAAGTTGTAACATTGCAGGTT 60.202 41.667 10.21 10.21 0.00 3.50
2888 3736 4.976116 GTCAAGTTGTAACATTGCAGGTTC 59.024 41.667 8.85 3.49 0.00 3.62
2889 3737 4.642437 TCAAGTTGTAACATTGCAGGTTCA 59.358 37.500 8.85 5.59 0.00 3.18
2890 3738 4.836125 AGTTGTAACATTGCAGGTTCAG 57.164 40.909 8.85 0.00 0.00 3.02
2891 3739 4.460263 AGTTGTAACATTGCAGGTTCAGA 58.540 39.130 8.85 0.00 0.00 3.27
2892 3740 4.887071 AGTTGTAACATTGCAGGTTCAGAA 59.113 37.500 8.85 0.15 0.00 3.02
2893 3741 5.359576 AGTTGTAACATTGCAGGTTCAGAAA 59.640 36.000 8.85 0.00 0.00 2.52
2894 3742 5.843673 TGTAACATTGCAGGTTCAGAAAA 57.156 34.783 8.85 0.00 0.00 2.29
2895 3743 6.403866 TGTAACATTGCAGGTTCAGAAAAT 57.596 33.333 8.85 0.00 0.00 1.82
2896 3744 6.446318 TGTAACATTGCAGGTTCAGAAAATC 58.554 36.000 8.85 0.00 0.00 2.17
2897 3745 5.534207 AACATTGCAGGTTCAGAAAATCA 57.466 34.783 0.43 0.00 0.00 2.57
2898 3746 5.534207 ACATTGCAGGTTCAGAAAATCAA 57.466 34.783 0.00 0.00 0.00 2.57
2899 3747 6.105397 ACATTGCAGGTTCAGAAAATCAAT 57.895 33.333 0.00 0.00 0.00 2.57
2900 3748 5.929992 ACATTGCAGGTTCAGAAAATCAATG 59.070 36.000 17.96 17.96 42.82 2.82
2901 3749 3.916761 TGCAGGTTCAGAAAATCAATGC 58.083 40.909 0.00 0.00 0.00 3.56
2902 3750 3.321396 TGCAGGTTCAGAAAATCAATGCA 59.679 39.130 0.00 0.00 38.70 3.96
2903 3751 4.202233 TGCAGGTTCAGAAAATCAATGCAA 60.202 37.500 0.00 0.00 38.13 4.08
2904 3752 4.751098 GCAGGTTCAGAAAATCAATGCAAA 59.249 37.500 0.00 0.00 0.00 3.68
2905 3753 5.236911 GCAGGTTCAGAAAATCAATGCAAAA 59.763 36.000 0.00 0.00 0.00 2.44
2906 3754 6.072893 GCAGGTTCAGAAAATCAATGCAAAAT 60.073 34.615 0.00 0.00 0.00 1.82
2907 3755 7.118101 GCAGGTTCAGAAAATCAATGCAAAATA 59.882 33.333 0.00 0.00 0.00 1.40
2965 4638 4.144297 ACTCTTGCTTTGAAGTGGCAATA 58.856 39.130 0.00 0.00 43.51 1.90
2966 4639 4.768968 ACTCTTGCTTTGAAGTGGCAATAT 59.231 37.500 0.00 0.00 43.51 1.28
2980 4653 5.545335 AGTGGCAATATATCATGGTCTCAGA 59.455 40.000 0.00 0.00 0.00 3.27
2989 4662 1.205655 CATGGTCTCAGAGGAGCGAAA 59.794 52.381 0.00 0.00 41.13 3.46
3045 4769 4.811024 TCATGCTGTTATGTTCTCGATTCC 59.189 41.667 0.00 0.00 0.00 3.01
3046 4770 4.200838 TGCTGTTATGTTCTCGATTCCA 57.799 40.909 0.00 0.00 0.00 3.53
3048 4772 3.309954 GCTGTTATGTTCTCGATTCCACC 59.690 47.826 0.00 0.00 0.00 4.61
3050 4774 4.250464 TGTTATGTTCTCGATTCCACCAC 58.750 43.478 0.00 0.00 0.00 4.16
3087 4847 1.617850 CATTTACTGCACCTTGGCCAA 59.382 47.619 19.25 19.25 0.00 4.52
3089 4849 0.184933 TTACTGCACCTTGGCCAACT 59.815 50.000 16.05 0.00 0.00 3.16
3090 4850 0.537143 TACTGCACCTTGGCCAACTG 60.537 55.000 16.05 13.82 0.00 3.16
3091 4851 3.216944 CTGCACCTTGGCCAACTGC 62.217 63.158 26.68 26.68 40.16 4.40
3092 4852 2.914097 GCACCTTGGCCAACTGCT 60.914 61.111 26.34 5.19 40.92 4.24
3093 4853 1.603455 GCACCTTGGCCAACTGCTA 60.603 57.895 26.34 4.46 40.92 3.49
3094 4854 1.589716 GCACCTTGGCCAACTGCTAG 61.590 60.000 26.34 13.12 40.92 3.42
3095 4855 0.036732 CACCTTGGCCAACTGCTAGA 59.963 55.000 16.05 0.00 40.92 2.43
3096 4856 0.326264 ACCTTGGCCAACTGCTAGAG 59.674 55.000 16.05 1.23 40.92 2.43
3097 4857 0.615331 CCTTGGCCAACTGCTAGAGA 59.385 55.000 16.05 0.00 40.92 3.10
3102 4862 1.003696 GGCCAACTGCTAGAGACCTTT 59.996 52.381 0.00 0.00 40.92 3.11
3104 4864 2.611518 CCAACTGCTAGAGACCTTTCG 58.388 52.381 0.00 0.00 0.00 3.46
3108 4868 0.614979 TGCTAGAGACCTTTCGGCCT 60.615 55.000 0.00 0.00 0.00 5.19
3113 4873 0.960861 GAGACCTTTCGGCCTTTGGG 60.961 60.000 0.00 0.17 0.00 4.12
3175 5786 2.119484 TTGTTGGGCTCTACGGGTGG 62.119 60.000 0.00 0.00 0.00 4.61
3176 5787 3.006728 TTGGGCTCTACGGGTGGG 61.007 66.667 0.00 0.00 0.00 4.61
3189 5813 2.034687 GTGGGGCACTGTGATGCT 59.965 61.111 12.86 0.00 45.38 3.79
3192 5816 2.265739 GGGCACTGTGATGCTCGA 59.734 61.111 12.86 0.00 45.38 4.04
3194 5818 0.745845 GGGCACTGTGATGCTCGAAT 60.746 55.000 12.86 0.00 45.38 3.34
3207 5831 7.389607 TGTGATGCTCGAATATGAATCATCATT 59.610 33.333 0.00 0.00 43.89 2.57
3226 5851 9.486497 TCATCATTAGATTTCTTATCAGCAGAC 57.514 33.333 0.00 0.00 30.20 3.51
3240 5865 1.625315 AGCAGACACATCAGCTGGTTA 59.375 47.619 15.13 0.00 45.28 2.85
3280 5905 8.985315 TTGAACCATCATAATCTAGCAGAATT 57.015 30.769 0.00 0.00 34.96 2.17
3292 5917 1.482593 AGCAGAATTACCTCGACCTGG 59.517 52.381 0.00 0.00 0.00 4.45
3324 5949 2.890311 ACGGCAATTTTGTCTGGATGAA 59.110 40.909 0.00 0.00 0.00 2.57
3362 5989 5.675538 AGTCTGAACAAAGTAAGAGCAACT 58.324 37.500 0.00 0.00 0.00 3.16
3374 6001 1.968493 AGAGCAACTCGGTAACCTCAA 59.032 47.619 0.00 0.00 35.36 3.02
3382 6010 6.338146 CAACTCGGTAACCTCAAGATAATGA 58.662 40.000 0.00 0.00 0.00 2.57
3385 6013 6.145338 TCGGTAACCTCAAGATAATGACTC 57.855 41.667 0.00 0.00 0.00 3.36
3413 6041 3.062099 TGCGCGATGTATTTTCTTCACTC 59.938 43.478 12.10 0.00 0.00 3.51
3415 6043 4.569029 CGCGATGTATTTTCTTCACTCAC 58.431 43.478 0.00 0.00 0.00 3.51
3428 6063 3.334583 TCACTCACTGGTAGCCATTTC 57.665 47.619 0.00 0.00 30.82 2.17
3439 6074 2.686816 GCCATTTCCGTCCACACCG 61.687 63.158 0.00 0.00 0.00 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.729756 CATCTGTATGTTGTAGTCCATTTGAAA 58.270 33.333 0.00 0.00 0.00 2.69
1 2 7.882791 ACATCTGTATGTTGTAGTCCATTTGAA 59.117 33.333 0.00 0.00 44.07 2.69
2 3 7.394016 ACATCTGTATGTTGTAGTCCATTTGA 58.606 34.615 0.00 0.00 44.07 2.69
3 4 7.615582 ACATCTGTATGTTGTAGTCCATTTG 57.384 36.000 0.00 0.00 44.07 2.32
19 20 9.520515 TCTAGAATATGTCTGCATACATCTGTA 57.479 33.333 19.80 10.97 40.05 2.74
20 21 8.414629 TCTAGAATATGTCTGCATACATCTGT 57.585 34.615 19.80 10.48 40.05 3.41
21 22 8.522003 ACTCTAGAATATGTCTGCATACATCTG 58.478 37.037 19.80 8.49 40.05 2.90
22 23 8.522003 CACTCTAGAATATGTCTGCATACATCT 58.478 37.037 19.80 14.61 40.05 2.90
23 24 8.303156 ACACTCTAGAATATGTCTGCATACATC 58.697 37.037 19.80 8.36 40.05 3.06
24 25 8.187913 ACACTCTAGAATATGTCTGCATACAT 57.812 34.615 20.04 20.04 40.05 2.29
25 26 7.588497 ACACTCTAGAATATGTCTGCATACA 57.412 36.000 7.44 7.44 40.05 2.29
26 27 9.004717 TCTACACTCTAGAATATGTCTGCATAC 57.995 37.037 7.12 0.00 40.05 2.39
27 28 9.746457 ATCTACACTCTAGAATATGTCTGCATA 57.254 33.333 7.12 0.00 41.31 3.14
28 29 8.648698 ATCTACACTCTAGAATATGTCTGCAT 57.351 34.615 7.12 0.00 37.12 3.96
29 30 8.470657 AATCTACACTCTAGAATATGTCTGCA 57.529 34.615 7.12 0.00 37.12 4.41
30 31 8.572185 TGAATCTACACTCTAGAATATGTCTGC 58.428 37.037 7.12 0.00 37.12 4.26
31 32 9.891828 GTGAATCTACACTCTAGAATATGTCTG 57.108 37.037 7.12 3.80 36.20 3.51
32 33 9.860650 AGTGAATCTACACTCTAGAATATGTCT 57.139 33.333 7.12 0.00 46.36 3.41
46 47 6.369065 ACGGAGAAAAATGAGTGAATCTACAC 59.631 38.462 0.00 0.00 40.60 2.90
47 48 6.368791 CACGGAGAAAAATGAGTGAATCTACA 59.631 38.462 0.00 0.00 0.00 2.74
48 49 6.369065 ACACGGAGAAAAATGAGTGAATCTAC 59.631 38.462 0.19 0.00 34.16 2.59
49 50 6.368791 CACACGGAGAAAAATGAGTGAATCTA 59.631 38.462 0.19 0.00 34.16 1.98
50 51 5.180117 CACACGGAGAAAAATGAGTGAATCT 59.820 40.000 0.19 0.00 34.16 2.40
51 52 5.049405 ACACACGGAGAAAAATGAGTGAATC 60.049 40.000 0.00 0.00 34.16 2.52
52 53 4.821805 ACACACGGAGAAAAATGAGTGAAT 59.178 37.500 0.00 0.00 34.16 2.57
53 54 4.196193 ACACACGGAGAAAAATGAGTGAA 58.804 39.130 0.00 0.00 34.16 3.18
54 55 3.804036 ACACACGGAGAAAAATGAGTGA 58.196 40.909 0.00 0.00 34.16 3.41
55 56 4.750098 ACTACACACGGAGAAAAATGAGTG 59.250 41.667 0.00 0.00 35.89 3.51
56 57 4.957296 ACTACACACGGAGAAAAATGAGT 58.043 39.130 0.00 0.00 0.00 3.41
57 58 4.988540 TGACTACACACGGAGAAAAATGAG 59.011 41.667 0.00 0.00 0.00 2.90
58 59 4.748102 GTGACTACACACGGAGAAAAATGA 59.252 41.667 0.00 0.00 45.32 2.57
59 60 5.018695 GTGACTACACACGGAGAAAAATG 57.981 43.478 0.00 0.00 45.32 2.32
72 73 5.542779 AGAGATTCCAACAAGTGACTACAC 58.457 41.667 0.00 0.00 46.24 2.90
73 74 5.808366 AGAGATTCCAACAAGTGACTACA 57.192 39.130 0.00 0.00 0.00 2.74
74 75 8.603242 TTTTAGAGATTCCAACAAGTGACTAC 57.397 34.615 0.00 0.00 0.00 2.73
99 100 7.864770 TCCCTCCGTCCTAAATATAAGTTTTT 58.135 34.615 0.00 0.00 0.00 1.94
100 101 7.126879 ACTCCCTCCGTCCTAAATATAAGTTTT 59.873 37.037 0.00 0.00 0.00 2.43
101 102 6.614496 ACTCCCTCCGTCCTAAATATAAGTTT 59.386 38.462 0.00 0.00 0.00 2.66
102 103 6.141790 ACTCCCTCCGTCCTAAATATAAGTT 58.858 40.000 0.00 0.00 0.00 2.66
103 104 5.713807 ACTCCCTCCGTCCTAAATATAAGT 58.286 41.667 0.00 0.00 0.00 2.24
104 105 7.957992 ATACTCCCTCCGTCCTAAATATAAG 57.042 40.000 0.00 0.00 0.00 1.73
107 108 9.589461 CATATATACTCCCTCCGTCCTAAATAT 57.411 37.037 0.00 0.00 0.00 1.28
108 109 7.504911 GCATATATACTCCCTCCGTCCTAAATA 59.495 40.741 0.00 0.00 0.00 1.40
109 110 6.324254 GCATATATACTCCCTCCGTCCTAAAT 59.676 42.308 0.00 0.00 0.00 1.40
110 111 5.655532 GCATATATACTCCCTCCGTCCTAAA 59.344 44.000 0.00 0.00 0.00 1.85
111 112 5.198965 GCATATATACTCCCTCCGTCCTAA 58.801 45.833 0.00 0.00 0.00 2.69
112 113 4.228895 TGCATATATACTCCCTCCGTCCTA 59.771 45.833 0.00 0.00 0.00 2.94
113 114 3.011369 TGCATATATACTCCCTCCGTCCT 59.989 47.826 0.00 0.00 0.00 3.85
114 115 3.362706 TGCATATATACTCCCTCCGTCC 58.637 50.000 0.00 0.00 0.00 4.79
115 116 4.737946 GCATGCATATATACTCCCTCCGTC 60.738 50.000 14.21 0.00 0.00 4.79
116 117 3.133003 GCATGCATATATACTCCCTCCGT 59.867 47.826 14.21 0.00 0.00 4.69
117 118 3.722147 GCATGCATATATACTCCCTCCG 58.278 50.000 14.21 0.00 0.00 4.63
118 119 3.133003 ACGCATGCATATATACTCCCTCC 59.867 47.826 19.57 0.00 0.00 4.30
119 120 4.115516 CACGCATGCATATATACTCCCTC 58.884 47.826 19.57 0.00 0.00 4.30
120 121 3.118629 CCACGCATGCATATATACTCCCT 60.119 47.826 19.57 0.00 0.00 4.20
121 122 3.118775 TCCACGCATGCATATATACTCCC 60.119 47.826 19.57 0.00 0.00 4.30
122 123 4.123497 TCCACGCATGCATATATACTCC 57.877 45.455 19.57 0.00 0.00 3.85
123 124 5.812127 TGAATCCACGCATGCATATATACTC 59.188 40.000 19.57 4.75 0.00 2.59
139 140 4.098960 ACAATCATCAAGGCATGAATCCAC 59.901 41.667 0.00 0.00 42.54 4.02
247 249 7.176515 TCCTGCTAAGCATGTTCATTTTTCTTA 59.823 33.333 0.00 0.00 38.13 2.10
256 259 2.568956 AGAGTCCTGCTAAGCATGTTCA 59.431 45.455 0.00 0.00 38.13 3.18
258 261 2.568956 TCAGAGTCCTGCTAAGCATGTT 59.431 45.455 0.00 0.00 38.13 2.71
294 297 6.152831 GGCCCAAAAGATCATGTTAGTAAACT 59.847 38.462 0.00 0.00 36.51 2.66
295 298 6.152831 AGGCCCAAAAGATCATGTTAGTAAAC 59.847 38.462 0.00 0.00 36.07 2.01
298 301 5.450818 AGGCCCAAAAGATCATGTTAGTA 57.549 39.130 0.00 0.00 0.00 1.82
299 302 4.322057 AGGCCCAAAAGATCATGTTAGT 57.678 40.909 0.00 0.00 0.00 2.24
300 303 5.888161 AGTTAGGCCCAAAAGATCATGTTAG 59.112 40.000 0.00 0.00 0.00 2.34
301 304 5.652014 CAGTTAGGCCCAAAAGATCATGTTA 59.348 40.000 0.00 0.00 0.00 2.41
302 305 4.463891 CAGTTAGGCCCAAAAGATCATGTT 59.536 41.667 0.00 0.00 0.00 2.71
306 312 3.330701 AGTCAGTTAGGCCCAAAAGATCA 59.669 43.478 0.00 0.00 0.00 2.92
413 420 8.950208 ACGAAATTTCCTTACCATTTTTGAAA 57.050 26.923 12.54 0.00 0.00 2.69
414 421 8.950208 AACGAAATTTCCTTACCATTTTTGAA 57.050 26.923 12.54 0.00 0.00 2.69
416 423 7.439655 TGGAACGAAATTTCCTTACCATTTTTG 59.560 33.333 12.54 0.00 44.89 2.44
473 480 7.299586 CGAGATAAAACAAACCGAACCATTTA 58.700 34.615 0.00 0.00 0.00 1.40
487 494 7.392113 ACCAACAAATCATACCGAGATAAAACA 59.608 33.333 0.00 0.00 0.00 2.83
495 502 8.980143 AAATTAAACCAACAAATCATACCGAG 57.020 30.769 0.00 0.00 0.00 4.63
515 522 7.540400 CAGAATTCACACGGTGCATTAAAATTA 59.460 33.333 8.30 0.00 30.45 1.40
564 573 1.413077 GACATTAAGGGGAGTCTCGGG 59.587 57.143 0.00 0.00 0.00 5.14
699 708 1.476488 GAGCCCATATGCACCGTTTTT 59.524 47.619 0.00 0.00 0.00 1.94
700 709 1.102978 GAGCCCATATGCACCGTTTT 58.897 50.000 0.00 0.00 0.00 2.43
704 713 1.665916 CTCGAGCCCATATGCACCG 60.666 63.158 0.00 0.00 0.00 4.94
705 714 1.963338 GCTCGAGCCCATATGCACC 60.963 63.158 27.22 0.00 34.31 5.01
712 721 1.220206 CTTGTGAGCTCGAGCCCAT 59.780 57.895 32.94 16.02 43.38 4.00
715 724 4.492955 CTCTTGTGAGCTCGAGCC 57.507 61.111 32.94 23.66 43.38 4.70
723 732 2.975410 TGCGAAAATGCTCTTGTGAG 57.025 45.000 0.00 0.00 42.96 3.51
735 744 7.122650 AGAGGGAAAATGAGATAAATGCGAAAA 59.877 33.333 0.00 0.00 0.00 2.29
777 787 7.680739 TGGGCCCTAAAATCTTTAAACCTATTT 59.319 33.333 25.70 0.00 0.00 1.40
778 788 7.193338 TGGGCCCTAAAATCTTTAAACCTATT 58.807 34.615 25.70 0.00 0.00 1.73
779 789 6.747931 TGGGCCCTAAAATCTTTAAACCTAT 58.252 36.000 25.70 0.00 0.00 2.57
781 791 5.018374 TGGGCCCTAAAATCTTTAAACCT 57.982 39.130 25.70 0.00 0.00 3.50
782 792 5.950544 ATGGGCCCTAAAATCTTTAAACC 57.049 39.130 25.70 0.00 0.00 3.27
783 793 7.335924 GGAAAATGGGCCCTAAAATCTTTAAAC 59.664 37.037 25.70 6.62 0.00 2.01
784 794 7.398829 GGAAAATGGGCCCTAAAATCTTTAAA 58.601 34.615 25.70 0.00 0.00 1.52
785 795 6.069905 GGGAAAATGGGCCCTAAAATCTTTAA 60.070 38.462 25.70 0.00 41.31 1.52
786 796 5.427157 GGGAAAATGGGCCCTAAAATCTTTA 59.573 40.000 25.70 0.00 41.31 1.85
787 797 4.227300 GGGAAAATGGGCCCTAAAATCTTT 59.773 41.667 25.70 11.18 41.31 2.52
892 902 1.873863 GGGTTCGGCTGCTTTGTAC 59.126 57.895 0.00 0.00 0.00 2.90
973 997 9.546428 CTTTCTTCTTCTTCTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
996 1023 5.312120 AGTTCACGTCGTAGATCATCTTT 57.688 39.130 0.00 0.00 40.67 2.52
1078 1105 1.920835 GGGCTGTGAAGGGGAGAGT 60.921 63.158 0.00 0.00 0.00 3.24
1234 1311 3.685058 GGCAAAGAACAGCGAATACATC 58.315 45.455 0.00 0.00 0.00 3.06
1244 1321 6.458342 GGGATATTTTCTACGGCAAAGAACAG 60.458 42.308 0.00 0.00 32.81 3.16
1252 1329 4.444306 CCTCAAGGGATATTTTCTACGGCA 60.444 45.833 0.00 0.00 37.23 5.69
1280 1357 0.108138 CTCGTTGAGCCCCTAACCAG 60.108 60.000 0.00 0.00 0.00 4.00
1418 1497 3.149981 GGAAGGCAGCAAGAAGTAGTTT 58.850 45.455 0.00 0.00 0.00 2.66
1465 1692 5.926542 CACGTCTCCAATTTTCTTCTGACTA 59.073 40.000 0.00 0.00 0.00 2.59
1526 1753 9.941664 AGCAATTTATCTGAAATGTCGAATAAG 57.058 29.630 0.00 0.00 0.00 1.73
1529 1756 8.461222 TGAAGCAATTTATCTGAAATGTCGAAT 58.539 29.630 0.00 0.00 0.00 3.34
1530 1757 7.815641 TGAAGCAATTTATCTGAAATGTCGAA 58.184 30.769 0.00 0.00 0.00 3.71
1531 1758 7.376435 TGAAGCAATTTATCTGAAATGTCGA 57.624 32.000 0.00 0.00 0.00 4.20
1532 1759 7.538334 TGTTGAAGCAATTTATCTGAAATGTCG 59.462 33.333 0.00 0.00 0.00 4.35
1533 1760 8.746922 TGTTGAAGCAATTTATCTGAAATGTC 57.253 30.769 0.00 0.00 0.00 3.06
1635 1862 5.049405 GCACATGCTCTTACAAGTAAACAGT 60.049 40.000 0.00 0.00 38.21 3.55
1643 1870 1.131883 GGCTGCACATGCTCTTACAAG 59.868 52.381 5.31 0.00 42.66 3.16
1667 1894 5.447279 GCATCCACGGTGTTTAGTTCATTAG 60.447 44.000 7.45 0.00 0.00 1.73
1668 1895 4.393680 GCATCCACGGTGTTTAGTTCATTA 59.606 41.667 7.45 0.00 0.00 1.90
1698 1925 8.879427 AGGGAGTATTAAACAAGCTTTACAAT 57.121 30.769 0.00 0.00 0.00 2.71
1718 1945 6.284459 GTCTTACATTATGGAACTGAGGGAG 58.716 44.000 0.00 0.00 0.00 4.30
1721 1948 5.661458 ACGTCTTACATTATGGAACTGAGG 58.339 41.667 0.00 0.00 0.00 3.86
1722 1949 7.330946 TGAAACGTCTTACATTATGGAACTGAG 59.669 37.037 0.00 0.00 0.00 3.35
1723 1950 7.156000 TGAAACGTCTTACATTATGGAACTGA 58.844 34.615 0.00 0.00 0.00 3.41
1724 1951 7.359262 TGAAACGTCTTACATTATGGAACTG 57.641 36.000 0.00 0.00 0.00 3.16
1725 1952 7.660208 ACTTGAAACGTCTTACATTATGGAACT 59.340 33.333 0.00 0.00 0.00 3.01
1726 1953 7.803724 ACTTGAAACGTCTTACATTATGGAAC 58.196 34.615 0.00 0.00 0.00 3.62
1727 1954 7.972832 ACTTGAAACGTCTTACATTATGGAA 57.027 32.000 0.00 0.00 0.00 3.53
1728 1955 7.762615 CCTACTTGAAACGTCTTACATTATGGA 59.237 37.037 0.00 0.00 0.00 3.41
1729 1956 7.465513 GCCTACTTGAAACGTCTTACATTATGG 60.466 40.741 0.00 0.00 0.00 2.74
1730 1957 7.064134 TGCCTACTTGAAACGTCTTACATTATG 59.936 37.037 0.00 0.00 0.00 1.90
1731 1958 7.101054 TGCCTACTTGAAACGTCTTACATTAT 58.899 34.615 0.00 0.00 0.00 1.28
1732 1959 6.457355 TGCCTACTTGAAACGTCTTACATTA 58.543 36.000 0.00 0.00 0.00 1.90
1733 1960 5.302360 TGCCTACTTGAAACGTCTTACATT 58.698 37.500 0.00 0.00 0.00 2.71
1734 1961 4.890088 TGCCTACTTGAAACGTCTTACAT 58.110 39.130 0.00 0.00 0.00 2.29
1735 1962 4.325028 TGCCTACTTGAAACGTCTTACA 57.675 40.909 0.00 0.00 0.00 2.41
1736 1963 4.689345 ACATGCCTACTTGAAACGTCTTAC 59.311 41.667 0.00 0.00 0.00 2.34
1737 1964 4.688879 CACATGCCTACTTGAAACGTCTTA 59.311 41.667 0.00 0.00 0.00 2.10
1738 1965 3.498397 CACATGCCTACTTGAAACGTCTT 59.502 43.478 0.00 0.00 0.00 3.01
1739 1966 3.067106 CACATGCCTACTTGAAACGTCT 58.933 45.455 0.00 0.00 0.00 4.18
1740 1967 2.806244 ACACATGCCTACTTGAAACGTC 59.194 45.455 0.00 0.00 0.00 4.34
1741 1968 2.846193 ACACATGCCTACTTGAAACGT 58.154 42.857 0.00 0.00 0.00 3.99
1742 1969 3.896648 AACACATGCCTACTTGAAACG 57.103 42.857 0.00 0.00 0.00 3.60
1743 1970 6.743575 AGATAACACATGCCTACTTGAAAC 57.256 37.500 0.00 0.00 0.00 2.78
1744 1971 8.856153 TTAAGATAACACATGCCTACTTGAAA 57.144 30.769 0.00 0.00 0.00 2.69
1787 2014 6.935771 TCAAATAAGCTTTCCACCGTAACTTA 59.064 34.615 3.20 0.00 0.00 2.24
1795 2022 7.922811 CCAAGAATATCAAATAAGCTTTCCACC 59.077 37.037 3.20 0.00 0.00 4.61
1820 2047 2.554893 CCTACTCGAGAGCTTACCATCC 59.445 54.545 21.68 0.00 0.00 3.51
1834 2287 4.553323 GAGTACTCTCTAGCTCCTACTCG 58.447 52.174 15.91 0.00 37.68 4.18
1862 2331 7.807977 TTCAAATAAGAGCAGAGAAAACACT 57.192 32.000 0.00 0.00 0.00 3.55
1880 2349 8.353423 AGTTACCTGTTGCTTCATATTCAAAT 57.647 30.769 0.00 0.00 0.00 2.32
1924 2508 7.548097 CGAGGTTATGGCACTCAATATAGTAT 58.452 38.462 0.00 0.00 0.00 2.12
1930 2514 2.434336 AGCGAGGTTATGGCACTCAATA 59.566 45.455 0.00 0.00 34.56 1.90
1931 2515 1.210478 AGCGAGGTTATGGCACTCAAT 59.790 47.619 0.00 0.00 34.56 2.57
1932 2516 0.613260 AGCGAGGTTATGGCACTCAA 59.387 50.000 0.00 0.00 34.56 3.02
1948 2533 1.129998 CTCAGCAATTCTCCAACAGCG 59.870 52.381 0.00 0.00 0.00 5.18
1970 2555 9.268268 TCAGATAAAGTCACGAATTTGTTAGTT 57.732 29.630 2.90 0.00 30.75 2.24
1972 2557 8.383619 CCTCAGATAAAGTCACGAATTTGTTAG 58.616 37.037 2.90 0.00 30.75 2.34
1973 2558 7.333423 CCCTCAGATAAAGTCACGAATTTGTTA 59.667 37.037 2.90 0.00 30.75 2.41
1980 2565 2.093658 GCCCCTCAGATAAAGTCACGAA 60.094 50.000 0.00 0.00 0.00 3.85
1995 2580 5.353400 GTGTTTATTTAGTACACAGCCCCTC 59.647 44.000 0.00 0.00 41.30 4.30
2013 2598 4.348461 TCACAGAACTACCATGGGTGTTTA 59.652 41.667 18.09 0.00 36.19 2.01
2018 2603 3.587061 TCAATCACAGAACTACCATGGGT 59.413 43.478 18.09 1.61 40.16 4.51
2022 2607 5.441718 ACCATCAATCACAGAACTACCAT 57.558 39.130 0.00 0.00 0.00 3.55
2024 2609 7.171678 GCTAATACCATCAATCACAGAACTACC 59.828 40.741 0.00 0.00 0.00 3.18
2032 2617 7.281841 TCATTGAGCTAATACCATCAATCACA 58.718 34.615 0.00 0.00 39.68 3.58
2046 2631 5.404096 CACATGCACATTTCATTGAGCTAA 58.596 37.500 0.00 0.00 34.74 3.09
2047 2632 4.675933 GCACATGCACATTTCATTGAGCTA 60.676 41.667 0.00 0.00 41.59 3.32
2053 2638 3.688694 AAGGCACATGCACATTTCATT 57.311 38.095 6.15 0.00 44.36 2.57
2093 2678 3.960102 CCATATAAACTGCCATGTGGGTT 59.040 43.478 0.54 0.00 39.65 4.11
2115 2700 2.367030 TGCCATTGCATGTTTGTAGC 57.633 45.000 0.00 0.00 44.23 3.58
2133 2718 2.349817 CCTGCGTACAAACAGCTTTCTG 60.350 50.000 0.00 0.00 45.71 3.02
2173 2758 7.817478 ACAAGTGTGTAACTGATGATTAATCGA 59.183 33.333 10.80 0.00 39.81 3.59
2174 2759 7.899841 CACAAGTGTGTAACTGATGATTAATCG 59.100 37.037 10.80 0.00 39.81 3.34
2217 2802 4.447138 AGAACACCTAAACAATGACCCA 57.553 40.909 0.00 0.00 0.00 4.51
2218 2803 5.784578 AAAGAACACCTAAACAATGACCC 57.215 39.130 0.00 0.00 0.00 4.46
2219 2804 7.377662 CGTAAAAAGAACACCTAAACAATGACC 59.622 37.037 0.00 0.00 0.00 4.02
2224 2809 6.439675 AGCGTAAAAAGAACACCTAAACAA 57.560 33.333 0.00 0.00 0.00 2.83
2232 2817 4.102649 AGTGCAAAGCGTAAAAAGAACAC 58.897 39.130 0.00 0.00 0.00 3.32
2235 2820 5.177881 TCGATAGTGCAAAGCGTAAAAAGAA 59.822 36.000 7.70 0.00 37.40 2.52
2237 2822 4.953269 TCGATAGTGCAAAGCGTAAAAAG 58.047 39.130 7.70 0.00 37.40 2.27
2256 2845 0.250684 TGCATTTCCCAACAGCTCGA 60.251 50.000 0.00 0.00 0.00 4.04
2257 2846 0.813184 ATGCATTTCCCAACAGCTCG 59.187 50.000 0.00 0.00 0.00 5.03
2262 2851 4.952071 TTCAGAAATGCATTTCCCAACA 57.048 36.364 36.81 20.38 45.52 3.33
2267 2856 4.021192 TGGGTCTTTCAGAAATGCATTTCC 60.021 41.667 36.81 24.40 45.52 3.13
2268 2857 5.138125 TGGGTCTTTCAGAAATGCATTTC 57.862 39.130 34.85 34.85 44.91 2.17
2306 2896 5.389859 TTTACTGCATTTTGGGAGTCATG 57.610 39.130 0.00 0.00 40.20 3.07
2308 2898 6.041409 TCAAATTTACTGCATTTTGGGAGTCA 59.959 34.615 0.00 0.00 40.20 3.41
2315 2908 6.463478 CGCTCATCAAATTTACTGCATTTTG 58.537 36.000 0.00 0.00 0.00 2.44
2318 2911 4.107622 GCGCTCATCAAATTTACTGCATT 58.892 39.130 0.00 0.00 0.00 3.56
2319 2912 3.379372 AGCGCTCATCAAATTTACTGCAT 59.621 39.130 2.64 0.00 0.00 3.96
2323 2916 3.609853 TCCAGCGCTCATCAAATTTACT 58.390 40.909 7.13 0.00 0.00 2.24
2330 2923 2.112380 TTGAATCCAGCGCTCATCAA 57.888 45.000 7.13 13.01 0.00 2.57
2337 2930 1.852942 TAGTCGATTGAATCCAGCGC 58.147 50.000 0.00 0.00 0.00 5.92
2338 2931 3.448686 AGTTAGTCGATTGAATCCAGCG 58.551 45.455 0.00 0.00 0.00 5.18
2343 2936 4.740695 CGAAGGGAGTTAGTCGATTGAATC 59.259 45.833 0.00 0.00 35.54 2.52
2350 2943 1.542492 AAGCGAAGGGAGTTAGTCGA 58.458 50.000 0.00 0.00 35.54 4.20
2351 2944 1.993370 CAAAGCGAAGGGAGTTAGTCG 59.007 52.381 0.00 0.00 36.59 4.18
2356 2949 2.341846 TCAACAAAGCGAAGGGAGTT 57.658 45.000 0.00 0.00 0.00 3.01
2365 2958 0.597568 TTCCTGCCATCAACAAAGCG 59.402 50.000 0.00 0.00 0.00 4.68
2372 2965 3.765511 CTCTTCCATTTTCCTGCCATCAA 59.234 43.478 0.00 0.00 0.00 2.57
2406 2999 0.768221 TGGCCTTGAACCTCTGGTCT 60.768 55.000 3.32 0.00 33.12 3.85
2457 3050 3.461773 CCGGACTGTCCAGGCGAT 61.462 66.667 25.42 0.00 37.31 4.58
2507 3100 6.655003 CACACCACTCATTTTAACATAGGAGT 59.345 38.462 0.00 0.00 36.12 3.85
2509 3102 6.774673 TCACACCACTCATTTTAACATAGGA 58.225 36.000 0.00 0.00 0.00 2.94
2510 3103 7.040755 TGTTCACACCACTCATTTTAACATAGG 60.041 37.037 0.00 0.00 0.00 2.57
2511 3104 7.870826 TGTTCACACCACTCATTTTAACATAG 58.129 34.615 0.00 0.00 0.00 2.23
2538 3131 2.614057 AGTTTTCAGAACGACCAAGCAG 59.386 45.455 0.00 0.00 0.00 4.24
2655 3495 5.337813 GGATTCCAAAACTTGAATGCTCCAT 60.338 40.000 0.00 0.00 0.00 3.41
2690 3531 4.460382 GGTGCTCCATAAATCACCATATGG 59.540 45.833 20.68 20.68 46.56 2.74
2691 3532 5.633830 GGTGCTCCATAAATCACCATATG 57.366 43.478 0.00 0.00 46.09 1.78
2729 3570 6.529477 GCAAAGGAAGAAATGTGAGAAATAGC 59.471 38.462 0.00 0.00 0.00 2.97
2741 3588 4.219288 AGCTTGATTCGCAAAGGAAGAAAT 59.781 37.500 0.00 0.00 35.74 2.17
2769 3616 7.693120 GGTATATATTAAGAGACAGAACGCGAG 59.307 40.741 15.93 1.54 0.00 5.03
2770 3617 7.389884 AGGTATATATTAAGAGACAGAACGCGA 59.610 37.037 15.93 0.00 0.00 5.87
2771 3618 7.528307 AGGTATATATTAAGAGACAGAACGCG 58.472 38.462 3.53 3.53 0.00 6.01
2788 3636 8.678199 CGAGTGCAGATGAAGAATAGGTATATA 58.322 37.037 0.00 0.00 0.00 0.86
2797 3645 3.739519 GCTACCGAGTGCAGATGAAGAAT 60.740 47.826 0.00 0.00 0.00 2.40
2821 3669 7.950684 AGTACATCTACCCTGAGATAAGCATAA 59.049 37.037 0.00 0.00 34.29 1.90
2823 3671 6.210385 CAGTACATCTACCCTGAGATAAGCAT 59.790 42.308 0.00 0.00 34.29 3.79
2829 3677 5.958321 TCATCAGTACATCTACCCTGAGAT 58.042 41.667 0.00 0.00 37.37 2.75
2833 3681 5.860941 ACTTCATCAGTACATCTACCCTG 57.139 43.478 0.00 0.00 31.97 4.45
2834 3682 5.958380 TGAACTTCATCAGTACATCTACCCT 59.042 40.000 0.00 0.00 32.94 4.34
2835 3683 6.096987 TCTGAACTTCATCAGTACATCTACCC 59.903 42.308 0.00 0.00 45.65 3.69
2836 3684 7.101652 TCTGAACTTCATCAGTACATCTACC 57.898 40.000 0.00 0.00 45.65 3.18
2846 3694 4.635223 TGACCAGTTCTGAACTTCATCAG 58.365 43.478 19.89 8.12 46.62 2.90
2847 3695 4.687901 TGACCAGTTCTGAACTTCATCA 57.312 40.909 19.89 18.54 40.46 3.07
2850 3698 4.487714 ACTTGACCAGTTCTGAACTTCA 57.512 40.909 19.89 18.18 40.46 3.02
2864 3712 3.317993 ACCTGCAATGTTACAACTTGACC 59.682 43.478 3.21 0.00 0.00 4.02
2881 3729 3.916761 TGCATTGATTTTCTGAACCTGC 58.083 40.909 0.00 0.00 0.00 4.85
2883 3731 8.149647 TGTATTTTGCATTGATTTTCTGAACCT 58.850 29.630 0.00 0.00 0.00 3.50
2884 3732 8.309163 TGTATTTTGCATTGATTTTCTGAACC 57.691 30.769 0.00 0.00 0.00 3.62
2922 3770 6.258947 AGAGTAGCAAAGTTGAACAGAAGAAC 59.741 38.462 0.00 0.00 0.00 3.01
2965 4638 2.824936 CGCTCCTCTGAGACCATGATAT 59.175 50.000 6.17 0.00 41.42 1.63
2966 4639 2.158608 TCGCTCCTCTGAGACCATGATA 60.159 50.000 6.17 0.00 41.42 2.15
2980 4653 1.153549 GATGCTCCGTTTCGCTCCT 60.154 57.895 0.00 0.00 0.00 3.69
2989 4662 3.687321 ATTGCCGCAGATGCTCCGT 62.687 57.895 2.95 0.00 39.32 4.69
3003 4727 1.153958 GCGAGTTCAAGGCCATTGC 60.154 57.895 5.01 0.00 38.89 3.56
3045 4769 3.587095 CATCAGCTGCTGGTGGTG 58.413 61.111 30.50 19.57 44.74 4.17
3067 4827 1.255882 TGGCCAAGGTGCAGTAAATG 58.744 50.000 0.61 0.00 0.00 2.32
3072 4832 1.829533 CAGTTGGCCAAGGTGCAGT 60.830 57.895 21.21 0.00 0.00 4.40
3102 4862 2.227757 TGGATCACCCAAAGGCCGA 61.228 57.895 0.00 0.00 43.29 5.54
3113 4873 5.163281 AGGATGATGCTAAGATGGATCAC 57.837 43.478 1.11 0.00 45.05 3.06
3175 5786 0.745845 ATTCGAGCATCACAGTGCCC 60.746 55.000 0.00 0.00 46.19 5.36
3176 5787 1.939974 TATTCGAGCATCACAGTGCC 58.060 50.000 0.00 0.00 46.19 5.01
3185 5809 9.833917 ATCTAATGATGATTCATATTCGAGCAT 57.166 29.630 0.00 0.00 41.83 3.79
3207 5831 7.785033 TGATGTGTCTGCTGATAAGAAATCTA 58.215 34.615 0.00 0.00 0.00 1.98
3223 5848 4.292186 ACAATAACCAGCTGATGTGTCT 57.708 40.909 17.39 0.00 0.00 3.41
3226 5851 4.406069 CGAAACAATAACCAGCTGATGTG 58.594 43.478 17.39 8.20 0.00 3.21
3273 5898 1.480954 TCCAGGTCGAGGTAATTCTGC 59.519 52.381 0.00 0.00 0.00 4.26
3292 5917 1.463674 AATTGCCGTCACCTGGATTC 58.536 50.000 0.00 0.00 0.00 2.52
3362 5989 5.220989 CGAGTCATTATCTTGAGGTTACCGA 60.221 44.000 0.00 0.00 0.00 4.69
3382 6010 0.179148 TACATCGCGCAATGACGAGT 60.179 50.000 16.69 3.30 42.31 4.18
3385 6013 2.367399 AAATACATCGCGCAATGACG 57.633 45.000 16.69 0.00 0.00 4.35
3396 6024 7.201565 GCTACCAGTGAGTGAAGAAAATACATC 60.202 40.741 0.00 0.00 0.00 3.06
3413 6041 1.369625 GACGGAAATGGCTACCAGTG 58.630 55.000 0.00 0.00 36.75 3.66
3415 6043 0.251916 TGGACGGAAATGGCTACCAG 59.748 55.000 0.00 0.00 36.75 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.