Multiple sequence alignment - TraesCS2B01G461400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G461400 chr2B 100.000 3887 0 0 1 3887 655013010 655009124 0.000000e+00 7179.0
1 TraesCS2B01G461400 chr2D 92.348 2679 117 36 420 3080 548082996 548080388 0.000000e+00 3731.0
2 TraesCS2B01G461400 chr2D 87.424 493 26 19 3396 3887 548079992 548079535 5.720000e-148 534.0
3 TraesCS2B01G461400 chr2D 84.689 209 25 3 1302 1504 68467435 68467228 6.590000e-48 202.0
4 TraesCS2B01G461400 chr2D 95.652 46 2 0 197 242 6304942 6304897 1.500000e-09 75.0
5 TraesCS2B01G461400 chr2A 90.977 2538 123 43 459 2934 690927325 690929818 0.000000e+00 3321.0
6 TraesCS2B01G461400 chr2A 84.867 489 27 16 3411 3886 690930486 690930940 2.130000e-122 449.0
7 TraesCS2B01G461400 chr2A 86.810 326 33 6 3075 3396 690930099 690930418 4.780000e-94 355.0
8 TraesCS2B01G461400 chr2A 91.447 152 9 4 2932 3080 690929849 690929999 5.090000e-49 206.0
9 TraesCS2B01G461400 chr6A 83.145 1679 213 43 1099 2756 53506405 53504776 0.000000e+00 1469.0
10 TraesCS2B01G461400 chr6A 81.477 772 117 21 2048 2809 495452169 495452924 9.230000e-171 610.0
11 TraesCS2B01G461400 chr6A 76.831 751 134 31 1236 1965 495450930 495451661 1.690000e-103 387.0
12 TraesCS2B01G461400 chr6A 76.812 414 53 20 3002 3396 53504373 53503984 3.960000e-45 193.0
13 TraesCS2B01G461400 chr6D 84.951 824 100 18 1910 2725 43058557 43057750 0.000000e+00 813.0
14 TraesCS2B01G461400 chr6D 81.796 835 95 33 1095 1914 43070590 43069798 0.000000e+00 647.0
15 TraesCS2B01G461400 chr6D 81.266 774 120 20 2048 2809 348084334 348083574 1.550000e-168 603.0
16 TraesCS2B01G461400 chr6D 78.070 684 121 22 1293 1965 348085341 348084676 4.680000e-109 405.0
17 TraesCS2B01G461400 chr6B 86.608 687 81 9 2124 2810 103663970 103664645 0.000000e+00 749.0
18 TraesCS2B01G461400 chr6B 81.534 769 122 17 2048 2809 532044904 532045659 1.980000e-172 616.0
19 TraesCS2B01G461400 chr6B 82.278 474 61 10 1130 1599 103663495 103663949 4.710000e-104 388.0
20 TraesCS2B01G461400 chr6B 76.710 687 127 24 1293 1965 532044003 532044670 6.180000e-93 351.0
21 TraesCS2B01G461400 chr6B 74.755 408 61 21 3002 3396 103664812 103665190 1.130000e-30 145.0
22 TraesCS2B01G461400 chr5D 80.062 973 168 20 1684 2646 381979812 381980768 0.000000e+00 699.0
23 TraesCS2B01G461400 chr7B 79.545 88 12 3 2958 3044 703956588 703956506 1.510000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G461400 chr2B 655009124 655013010 3886 True 7179.000000 7179 100.000000 1 3887 1 chr2B.!!$R1 3886
1 TraesCS2B01G461400 chr2D 548079535 548082996 3461 True 2132.500000 3731 89.886000 420 3887 2 chr2D.!!$R3 3467
2 TraesCS2B01G461400 chr2A 690927325 690930940 3615 False 1082.750000 3321 88.525250 459 3886 4 chr2A.!!$F1 3427
3 TraesCS2B01G461400 chr6A 53503984 53506405 2421 True 831.000000 1469 79.978500 1099 3396 2 chr6A.!!$R1 2297
4 TraesCS2B01G461400 chr6A 495450930 495452924 1994 False 498.500000 610 79.154000 1236 2809 2 chr6A.!!$F1 1573
5 TraesCS2B01G461400 chr6D 43057750 43058557 807 True 813.000000 813 84.951000 1910 2725 1 chr6D.!!$R1 815
6 TraesCS2B01G461400 chr6D 43069798 43070590 792 True 647.000000 647 81.796000 1095 1914 1 chr6D.!!$R2 819
7 TraesCS2B01G461400 chr6D 348083574 348085341 1767 True 504.000000 603 79.668000 1293 2809 2 chr6D.!!$R3 1516
8 TraesCS2B01G461400 chr6B 532044003 532045659 1656 False 483.500000 616 79.122000 1293 2809 2 chr6B.!!$F2 1516
9 TraesCS2B01G461400 chr6B 103663495 103665190 1695 False 427.333333 749 81.213667 1130 3396 3 chr6B.!!$F1 2266
10 TraesCS2B01G461400 chr5D 381979812 381980768 956 False 699.000000 699 80.062000 1684 2646 1 chr5D.!!$F1 962

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
95 96 0.028770 GCTAACGCGCATGCCATAAA 59.971 50.0 13.15 0.00 38.08 1.40 F
100 101 0.030504 CGCGCATGCCATAAATCCAA 59.969 50.0 13.15 0.00 38.08 3.53 F
404 405 0.033504 ACCTGCCATAATACTCGCGG 59.966 55.0 6.13 0.00 0.00 6.46 F
409 410 0.039437 CCATAATACTCGCGGCGTCT 60.039 55.0 22.90 10.79 0.00 4.18 F
427 428 0.109597 CTGTTGATTTGCCGTGAGCC 60.110 55.0 0.00 0.00 42.71 4.70 F
941 1009 0.302890 CGGATCGAATTGCACTGCTC 59.697 55.0 1.98 0.00 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1933 2028 0.035439 GGTTCGAGCTGGAATCCCAA 60.035 55.000 14.60 0.00 42.98 4.12 R
2040 2638 1.558294 TGTCCTCAGCTGCAGAATGAT 59.442 47.619 20.43 0.00 39.69 2.45 R
2097 2700 2.573009 TCAGGATGCTCTTGTTCCATGA 59.427 45.455 0.00 0.00 34.76 3.07 R
2690 3300 2.159296 CCATCCATCTGTGCACACAATG 60.159 50.000 17.42 20.59 41.33 2.82 R
2731 3341 1.676967 CAGGGCTCTGCAAAGGTCC 60.677 63.158 0.00 0.00 33.86 4.46 R
2909 3723 0.884704 TTCTTGTCAGAGTTGCGGCC 60.885 55.000 0.00 0.00 0.00 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.766219 GACAGAACTGTTTACACTTGTCTAA 57.234 36.000 8.87 0.00 45.05 2.10
25 26 7.535489 ACAGAACTGTTTACACTTGTCTAAC 57.465 36.000 1.32 0.00 41.83 2.34
26 27 7.101054 ACAGAACTGTTTACACTTGTCTAACA 58.899 34.615 1.32 8.73 41.83 2.41
27 28 7.064253 ACAGAACTGTTTACACTTGTCTAACAC 59.936 37.037 1.32 0.18 41.83 3.32
28 29 7.064134 CAGAACTGTTTACACTTGTCTAACACA 59.936 37.037 0.00 0.00 32.76 3.72
29 30 7.604927 AGAACTGTTTACACTTGTCTAACACAA 59.395 33.333 0.00 0.00 43.12 3.33
30 31 7.859325 ACTGTTTACACTTGTCTAACACAAT 57.141 32.000 6.09 0.00 44.32 2.71
31 32 8.951787 ACTGTTTACACTTGTCTAACACAATA 57.048 30.769 6.09 0.00 44.32 1.90
32 33 9.386010 ACTGTTTACACTTGTCTAACACAATAA 57.614 29.630 6.09 0.00 44.32 1.40
37 38 7.133891 ACACTTGTCTAACACAATAATCTGC 57.866 36.000 0.00 0.00 44.32 4.26
38 39 6.149474 ACACTTGTCTAACACAATAATCTGCC 59.851 38.462 0.00 0.00 44.32 4.85
39 40 5.648092 ACTTGTCTAACACAATAATCTGCCC 59.352 40.000 0.00 0.00 44.32 5.36
40 41 4.188462 TGTCTAACACAATAATCTGCCCG 58.812 43.478 0.00 0.00 29.30 6.13
41 42 4.189231 GTCTAACACAATAATCTGCCCGT 58.811 43.478 0.00 0.00 0.00 5.28
42 43 4.634443 GTCTAACACAATAATCTGCCCGTT 59.366 41.667 0.00 0.00 0.00 4.44
43 44 4.873827 TCTAACACAATAATCTGCCCGTTC 59.126 41.667 0.00 0.00 0.00 3.95
44 45 3.350219 ACACAATAATCTGCCCGTTCT 57.650 42.857 0.00 0.00 0.00 3.01
45 46 3.270877 ACACAATAATCTGCCCGTTCTC 58.729 45.455 0.00 0.00 0.00 2.87
46 47 2.285220 CACAATAATCTGCCCGTTCTCG 59.715 50.000 0.00 0.00 0.00 4.04
57 58 2.650163 CGTTCTCGGCCTAAAGTCG 58.350 57.895 0.00 2.50 0.00 4.18
58 59 1.411493 CGTTCTCGGCCTAAAGTCGC 61.411 60.000 0.00 0.00 0.00 5.19
59 60 1.082679 GTTCTCGGCCTAAAGTCGCC 61.083 60.000 0.00 0.00 42.05 5.54
60 61 1.537814 TTCTCGGCCTAAAGTCGCCA 61.538 55.000 0.00 0.00 46.04 5.69
61 62 1.810030 CTCGGCCTAAAGTCGCCAC 60.810 63.158 0.00 0.00 46.04 5.01
62 63 3.186047 CGGCCTAAAGTCGCCACG 61.186 66.667 0.00 0.00 46.04 4.94
63 64 3.497031 GGCCTAAAGTCGCCACGC 61.497 66.667 0.00 0.00 45.01 5.34
64 65 2.740826 GCCTAAAGTCGCCACGCA 60.741 61.111 0.00 0.00 0.00 5.24
65 66 2.106683 GCCTAAAGTCGCCACGCAT 61.107 57.895 0.00 0.00 0.00 4.73
66 67 1.644786 GCCTAAAGTCGCCACGCATT 61.645 55.000 0.00 0.00 0.00 3.56
67 68 0.802494 CCTAAAGTCGCCACGCATTT 59.198 50.000 0.00 0.00 0.00 2.32
68 69 1.202031 CCTAAAGTCGCCACGCATTTC 60.202 52.381 0.00 0.00 0.00 2.17
69 70 1.732259 CTAAAGTCGCCACGCATTTCT 59.268 47.619 0.00 0.00 0.00 2.52
70 71 0.238289 AAAGTCGCCACGCATTTCTG 59.762 50.000 0.00 0.00 0.00 3.02
71 72 0.884704 AAGTCGCCACGCATTTCTGT 60.885 50.000 0.00 0.00 0.00 3.41
72 73 0.884704 AGTCGCCACGCATTTCTGTT 60.885 50.000 0.00 0.00 0.00 3.16
73 74 0.452784 GTCGCCACGCATTTCTGTTC 60.453 55.000 0.00 0.00 0.00 3.18
74 75 1.509787 CGCCACGCATTTCTGTTCG 60.510 57.895 0.00 0.00 0.00 3.95
75 76 1.154225 GCCACGCATTTCTGTTCGG 60.154 57.895 0.00 0.00 0.00 4.30
76 77 1.501741 CCACGCATTTCTGTTCGGG 59.498 57.895 0.00 0.00 0.00 5.14
77 78 1.154225 CACGCATTTCTGTTCGGGC 60.154 57.895 0.00 0.00 0.00 6.13
78 79 1.302511 ACGCATTTCTGTTCGGGCT 60.303 52.632 0.00 0.00 0.00 5.19
79 80 0.036765 ACGCATTTCTGTTCGGGCTA 60.037 50.000 0.00 0.00 0.00 3.93
80 81 1.083489 CGCATTTCTGTTCGGGCTAA 58.917 50.000 0.00 0.00 0.00 3.09
81 82 1.202031 CGCATTTCTGTTCGGGCTAAC 60.202 52.381 0.00 0.00 0.00 2.34
82 83 1.202031 GCATTTCTGTTCGGGCTAACG 60.202 52.381 0.00 0.00 31.76 3.18
83 84 1.084289 ATTTCTGTTCGGGCTAACGC 58.916 50.000 0.00 0.00 31.76 4.84
92 93 3.585990 GGCTAACGCGCATGCCAT 61.586 61.111 25.05 0.00 44.34 4.40
93 94 2.250939 GGCTAACGCGCATGCCATA 61.251 57.895 25.05 0.00 44.34 2.74
94 95 1.646540 GCTAACGCGCATGCCATAA 59.353 52.632 13.15 0.00 38.08 1.90
95 96 0.028770 GCTAACGCGCATGCCATAAA 59.971 50.000 13.15 0.00 38.08 1.40
96 97 1.334960 GCTAACGCGCATGCCATAAAT 60.335 47.619 13.15 0.00 38.08 1.40
97 98 2.574322 CTAACGCGCATGCCATAAATC 58.426 47.619 13.15 0.00 38.08 2.17
98 99 0.030638 AACGCGCATGCCATAAATCC 59.969 50.000 13.15 0.00 38.08 3.01
99 100 1.100463 ACGCGCATGCCATAAATCCA 61.100 50.000 13.15 0.00 38.08 3.41
100 101 0.030504 CGCGCATGCCATAAATCCAA 59.969 50.000 13.15 0.00 38.08 3.53
101 102 1.535649 CGCGCATGCCATAAATCCAAA 60.536 47.619 13.15 0.00 38.08 3.28
102 103 2.548875 GCGCATGCCATAAATCCAAAA 58.451 42.857 13.15 0.00 33.98 2.44
103 104 2.284952 GCGCATGCCATAAATCCAAAAC 59.715 45.455 13.15 0.00 33.98 2.43
104 105 3.784338 CGCATGCCATAAATCCAAAACT 58.216 40.909 13.15 0.00 0.00 2.66
105 106 3.552699 CGCATGCCATAAATCCAAAACTG 59.447 43.478 13.15 0.00 0.00 3.16
106 107 3.872771 GCATGCCATAAATCCAAAACTGG 59.127 43.478 6.36 0.00 0.00 4.00
107 108 4.444536 CATGCCATAAATCCAAAACTGGG 58.555 43.478 0.00 0.00 0.00 4.45
108 109 3.784178 TGCCATAAATCCAAAACTGGGA 58.216 40.909 0.00 0.00 39.14 4.37
116 117 4.871933 ATCCAAAACTGGGATTTCACAC 57.128 40.909 0.00 0.00 42.47 3.82
117 118 2.621055 TCCAAAACTGGGATTTCACACG 59.379 45.455 0.00 0.00 0.00 4.49
118 119 2.621055 CCAAAACTGGGATTTCACACGA 59.379 45.455 0.00 0.00 0.00 4.35
119 120 3.067461 CCAAAACTGGGATTTCACACGAA 59.933 43.478 0.00 0.00 0.00 3.85
120 121 4.261994 CCAAAACTGGGATTTCACACGAAT 60.262 41.667 0.00 0.00 0.00 3.34
121 122 5.288804 CAAAACTGGGATTTCACACGAATT 58.711 37.500 0.00 0.00 0.00 2.17
122 123 5.529581 AAACTGGGATTTCACACGAATTT 57.470 34.783 0.00 0.00 0.00 1.82
123 124 5.529581 AACTGGGATTTCACACGAATTTT 57.470 34.783 0.00 0.00 0.00 1.82
124 125 4.870363 ACTGGGATTTCACACGAATTTTG 58.130 39.130 0.00 0.00 0.00 2.44
125 126 3.648009 TGGGATTTCACACGAATTTTGC 58.352 40.909 0.00 0.00 0.00 3.68
126 127 2.661195 GGGATTTCACACGAATTTTGCG 59.339 45.455 0.00 0.00 0.00 4.85
127 128 3.560503 GGATTTCACACGAATTTTGCGA 58.439 40.909 0.00 0.00 0.00 5.10
128 129 3.603770 GGATTTCACACGAATTTTGCGAG 59.396 43.478 0.00 0.00 0.00 5.03
129 130 3.953874 TTTCACACGAATTTTGCGAGA 57.046 38.095 0.00 0.00 0.00 4.04
130 131 3.519908 TTCACACGAATTTTGCGAGAG 57.480 42.857 0.00 0.00 0.00 3.20
131 132 2.749776 TCACACGAATTTTGCGAGAGA 58.250 42.857 0.00 0.00 0.00 3.10
132 133 3.325870 TCACACGAATTTTGCGAGAGAT 58.674 40.909 0.00 0.00 0.00 2.75
133 134 3.745975 TCACACGAATTTTGCGAGAGATT 59.254 39.130 0.00 0.00 0.00 2.40
134 135 3.842428 CACACGAATTTTGCGAGAGATTG 59.158 43.478 0.00 0.00 0.00 2.67
135 136 3.120199 ACACGAATTTTGCGAGAGATTGG 60.120 43.478 0.00 0.00 0.00 3.16
136 137 3.125146 CACGAATTTTGCGAGAGATTGGA 59.875 43.478 0.00 0.00 0.00 3.53
137 138 3.751175 ACGAATTTTGCGAGAGATTGGAA 59.249 39.130 0.00 0.00 0.00 3.53
138 139 4.215399 ACGAATTTTGCGAGAGATTGGAAA 59.785 37.500 0.00 0.00 0.00 3.13
139 140 5.153513 CGAATTTTGCGAGAGATTGGAAAA 58.846 37.500 0.00 0.00 39.24 2.29
140 141 5.284660 CGAATTTTGCGAGAGATTGGAAAAG 59.715 40.000 0.00 0.00 38.50 2.27
141 142 4.503741 TTTTGCGAGAGATTGGAAAAGG 57.496 40.909 0.00 0.00 31.71 3.11
142 143 3.417069 TTGCGAGAGATTGGAAAAGGA 57.583 42.857 0.00 0.00 0.00 3.36
143 144 3.417069 TGCGAGAGATTGGAAAAGGAA 57.583 42.857 0.00 0.00 0.00 3.36
144 145 3.750371 TGCGAGAGATTGGAAAAGGAAA 58.250 40.909 0.00 0.00 0.00 3.13
145 146 4.335416 TGCGAGAGATTGGAAAAGGAAAT 58.665 39.130 0.00 0.00 0.00 2.17
146 147 4.766891 TGCGAGAGATTGGAAAAGGAAATT 59.233 37.500 0.00 0.00 0.00 1.82
147 148 5.098211 GCGAGAGATTGGAAAAGGAAATTG 58.902 41.667 0.00 0.00 0.00 2.32
148 149 5.106157 GCGAGAGATTGGAAAAGGAAATTGA 60.106 40.000 0.00 0.00 0.00 2.57
149 150 6.570378 GCGAGAGATTGGAAAAGGAAATTGAA 60.570 38.462 0.00 0.00 0.00 2.69
150 151 7.542025 CGAGAGATTGGAAAAGGAAATTGAAT 58.458 34.615 0.00 0.00 0.00 2.57
151 152 8.031277 CGAGAGATTGGAAAAGGAAATTGAATT 58.969 33.333 0.00 0.00 0.00 2.17
152 153 9.363763 GAGAGATTGGAAAAGGAAATTGAATTC 57.636 33.333 0.00 0.00 0.00 2.17
160 161 2.515912 GGAAATTGAATTCCGTGACGC 58.484 47.619 0.00 0.00 39.54 5.19
161 162 2.095466 GGAAATTGAATTCCGTGACGCA 60.095 45.455 0.00 0.00 39.54 5.24
162 163 2.611974 AATTGAATTCCGTGACGCAC 57.388 45.000 0.00 0.58 0.00 5.34
163 164 1.518325 ATTGAATTCCGTGACGCACA 58.482 45.000 0.00 0.00 33.40 4.57
164 165 0.584396 TTGAATTCCGTGACGCACAC 59.416 50.000 0.00 6.96 45.11 3.82
179 180 0.810648 CACACATGCACACCATACCC 59.189 55.000 0.00 0.00 31.47 3.69
180 181 0.323360 ACACATGCACACCATACCCC 60.323 55.000 0.00 0.00 31.47 4.95
181 182 0.034186 CACATGCACACCATACCCCT 60.034 55.000 0.00 0.00 31.47 4.79
182 183 1.211703 CACATGCACACCATACCCCTA 59.788 52.381 0.00 0.00 31.47 3.53
183 184 1.919654 ACATGCACACCATACCCCTAA 59.080 47.619 0.00 0.00 31.47 2.69
184 185 2.310349 ACATGCACACCATACCCCTAAA 59.690 45.455 0.00 0.00 31.47 1.85
185 186 2.799126 TGCACACCATACCCCTAAAG 57.201 50.000 0.00 0.00 0.00 1.85
186 187 2.270858 TGCACACCATACCCCTAAAGA 58.729 47.619 0.00 0.00 0.00 2.52
187 188 2.238646 TGCACACCATACCCCTAAAGAG 59.761 50.000 0.00 0.00 0.00 2.85
188 189 2.919228 CACACCATACCCCTAAAGAGC 58.081 52.381 0.00 0.00 0.00 4.09
189 190 1.485066 ACACCATACCCCTAAAGAGCG 59.515 52.381 0.00 0.00 0.00 5.03
190 191 1.760613 CACCATACCCCTAAAGAGCGA 59.239 52.381 0.00 0.00 0.00 4.93
191 192 2.040178 ACCATACCCCTAAAGAGCGAG 58.960 52.381 0.00 0.00 0.00 5.03
192 193 1.344763 CCATACCCCTAAAGAGCGAGG 59.655 57.143 0.00 0.00 0.00 4.63
193 194 2.317040 CATACCCCTAAAGAGCGAGGA 58.683 52.381 0.00 0.00 34.46 3.71
194 195 2.068834 TACCCCTAAAGAGCGAGGAG 57.931 55.000 0.00 0.00 34.46 3.69
209 210 3.622514 GAGCACGTCTCCTCCCAT 58.377 61.111 0.00 0.00 35.77 4.00
210 211 1.901085 GAGCACGTCTCCTCCCATT 59.099 57.895 0.00 0.00 35.77 3.16
211 212 0.460987 GAGCACGTCTCCTCCCATTG 60.461 60.000 0.00 0.00 35.77 2.82
212 213 0.904865 AGCACGTCTCCTCCCATTGA 60.905 55.000 0.00 0.00 0.00 2.57
213 214 0.036388 GCACGTCTCCTCCCATTGAA 60.036 55.000 0.00 0.00 0.00 2.69
214 215 1.726853 CACGTCTCCTCCCATTGAAC 58.273 55.000 0.00 0.00 0.00 3.18
215 216 0.246635 ACGTCTCCTCCCATTGAACG 59.753 55.000 0.00 0.00 0.00 3.95
216 217 0.246635 CGTCTCCTCCCATTGAACGT 59.753 55.000 0.00 0.00 0.00 3.99
217 218 1.726853 GTCTCCTCCCATTGAACGTG 58.273 55.000 0.00 0.00 0.00 4.49
218 219 0.036388 TCTCCTCCCATTGAACGTGC 60.036 55.000 0.00 0.00 0.00 5.34
219 220 0.321564 CTCCTCCCATTGAACGTGCA 60.322 55.000 0.00 0.00 0.00 4.57
220 221 0.327924 TCCTCCCATTGAACGTGCAT 59.672 50.000 0.00 0.00 0.00 3.96
221 222 0.734889 CCTCCCATTGAACGTGCATC 59.265 55.000 0.00 0.00 0.00 3.91
222 223 1.452110 CTCCCATTGAACGTGCATCA 58.548 50.000 0.00 0.00 0.00 3.07
223 224 1.131126 CTCCCATTGAACGTGCATCAC 59.869 52.381 0.00 0.00 0.00 3.06
224 225 1.167851 CCCATTGAACGTGCATCACT 58.832 50.000 0.00 0.00 31.34 3.41
225 226 1.135603 CCCATTGAACGTGCATCACTG 60.136 52.381 0.00 0.00 31.34 3.66
226 227 1.135603 CCATTGAACGTGCATCACTGG 60.136 52.381 9.88 9.88 40.03 4.00
227 228 1.805943 CATTGAACGTGCATCACTGGA 59.194 47.619 0.00 0.00 31.34 3.86
228 229 1.960417 TTGAACGTGCATCACTGGAA 58.040 45.000 0.00 0.00 31.34 3.53
229 230 1.960417 TGAACGTGCATCACTGGAAA 58.040 45.000 0.00 0.00 31.34 3.13
230 231 2.503331 TGAACGTGCATCACTGGAAAT 58.497 42.857 0.00 0.00 31.34 2.17
231 232 2.483877 TGAACGTGCATCACTGGAAATC 59.516 45.455 0.00 0.00 31.34 2.17
232 233 2.479566 ACGTGCATCACTGGAAATCT 57.520 45.000 0.00 0.00 31.34 2.40
233 234 2.783135 ACGTGCATCACTGGAAATCTT 58.217 42.857 0.00 0.00 31.34 2.40
234 235 2.485426 ACGTGCATCACTGGAAATCTTG 59.515 45.455 0.00 0.00 31.34 3.02
235 236 2.743664 CGTGCATCACTGGAAATCTTGA 59.256 45.455 0.00 0.00 31.34 3.02
236 237 3.189080 CGTGCATCACTGGAAATCTTGAA 59.811 43.478 0.00 0.00 31.34 2.69
237 238 4.320421 CGTGCATCACTGGAAATCTTGAAA 60.320 41.667 0.00 0.00 31.34 2.69
238 239 5.620654 CGTGCATCACTGGAAATCTTGAAAT 60.621 40.000 0.00 0.00 31.34 2.17
239 240 6.403527 CGTGCATCACTGGAAATCTTGAAATA 60.404 38.462 0.00 0.00 31.34 1.40
240 241 7.315142 GTGCATCACTGGAAATCTTGAAATAA 58.685 34.615 0.00 0.00 0.00 1.40
241 242 7.814107 GTGCATCACTGGAAATCTTGAAATAAA 59.186 33.333 0.00 0.00 0.00 1.40
242 243 7.814107 TGCATCACTGGAAATCTTGAAATAAAC 59.186 33.333 0.00 0.00 0.00 2.01
243 244 7.276438 GCATCACTGGAAATCTTGAAATAAACC 59.724 37.037 0.00 0.00 0.00 3.27
244 245 6.908825 TCACTGGAAATCTTGAAATAAACCG 58.091 36.000 0.00 0.00 0.00 4.44
245 246 6.488683 TCACTGGAAATCTTGAAATAAACCGT 59.511 34.615 0.00 0.00 0.00 4.83
246 247 6.801862 CACTGGAAATCTTGAAATAAACCGTC 59.198 38.462 0.00 0.00 0.00 4.79
247 248 5.933790 TGGAAATCTTGAAATAAACCGTCG 58.066 37.500 0.00 0.00 0.00 5.12
248 249 5.701750 TGGAAATCTTGAAATAAACCGTCGA 59.298 36.000 0.00 0.00 0.00 4.20
249 250 6.205076 TGGAAATCTTGAAATAAACCGTCGAA 59.795 34.615 0.00 0.00 0.00 3.71
250 251 6.522165 GGAAATCTTGAAATAAACCGTCGAAC 59.478 38.462 0.00 0.00 0.00 3.95
251 252 4.996062 TCTTGAAATAAACCGTCGAACC 57.004 40.909 0.00 0.00 0.00 3.62
252 253 4.378774 TCTTGAAATAAACCGTCGAACCA 58.621 39.130 0.00 0.00 0.00 3.67
253 254 4.998672 TCTTGAAATAAACCGTCGAACCAT 59.001 37.500 0.00 0.00 0.00 3.55
254 255 6.164876 TCTTGAAATAAACCGTCGAACCATA 58.835 36.000 0.00 0.00 0.00 2.74
255 256 6.311935 TCTTGAAATAAACCGTCGAACCATAG 59.688 38.462 0.00 0.00 0.00 2.23
256 257 4.871557 TGAAATAAACCGTCGAACCATAGG 59.128 41.667 0.00 0.00 0.00 2.57
257 258 4.476628 AATAAACCGTCGAACCATAGGT 57.523 40.909 0.00 0.00 37.65 3.08
259 260 2.088950 AACCGTCGAACCATAGGTTG 57.911 50.000 6.10 0.00 46.95 3.77
260 261 0.248289 ACCGTCGAACCATAGGTTGG 59.752 55.000 6.10 5.36 46.95 3.77
270 271 3.866883 CCATAGGTTGGTTCGCAAAAT 57.133 42.857 0.00 0.00 40.99 1.82
271 272 3.769536 CCATAGGTTGGTTCGCAAAATC 58.230 45.455 0.00 0.00 40.99 2.17
272 273 3.425404 CATAGGTTGGTTCGCAAAATCG 58.575 45.455 0.00 0.00 0.00 3.34
273 274 1.600023 AGGTTGGTTCGCAAAATCGA 58.400 45.000 0.00 0.00 36.60 3.59
274 275 1.950909 AGGTTGGTTCGCAAAATCGAA 59.049 42.857 0.00 0.00 44.96 3.71
280 281 2.931512 TTCGCAAAATCGAATTCCCC 57.068 45.000 0.00 0.00 42.68 4.81
281 282 2.122783 TCGCAAAATCGAATTCCCCT 57.877 45.000 0.00 0.00 35.31 4.79
282 283 3.269538 TCGCAAAATCGAATTCCCCTA 57.730 42.857 0.00 0.00 35.31 3.53
283 284 3.815809 TCGCAAAATCGAATTCCCCTAT 58.184 40.909 0.00 0.00 35.31 2.57
284 285 3.563808 TCGCAAAATCGAATTCCCCTATG 59.436 43.478 0.00 0.00 35.31 2.23
285 286 3.563808 CGCAAAATCGAATTCCCCTATGA 59.436 43.478 0.00 0.00 0.00 2.15
286 287 4.036262 CGCAAAATCGAATTCCCCTATGAA 59.964 41.667 0.00 0.00 0.00 2.57
287 288 5.281727 GCAAAATCGAATTCCCCTATGAAC 58.718 41.667 0.00 0.00 0.00 3.18
288 289 5.163561 GCAAAATCGAATTCCCCTATGAACA 60.164 40.000 0.00 0.00 0.00 3.18
289 290 6.461509 GCAAAATCGAATTCCCCTATGAACAT 60.462 38.462 0.00 0.00 0.00 2.71
290 291 6.884280 AAATCGAATTCCCCTATGAACATC 57.116 37.500 0.00 0.00 0.00 3.06
291 292 4.351874 TCGAATTCCCCTATGAACATCC 57.648 45.455 0.00 0.00 0.00 3.51
292 293 3.067106 CGAATTCCCCTATGAACATCCG 58.933 50.000 0.00 0.00 0.00 4.18
293 294 3.244078 CGAATTCCCCTATGAACATCCGA 60.244 47.826 0.00 0.00 0.00 4.55
294 295 4.714632 GAATTCCCCTATGAACATCCGAA 58.285 43.478 0.00 0.00 0.00 4.30
295 296 5.316987 GAATTCCCCTATGAACATCCGAAT 58.683 41.667 0.00 0.00 0.00 3.34
296 297 4.788925 TTCCCCTATGAACATCCGAATT 57.211 40.909 0.00 0.00 0.00 2.17
297 298 4.788925 TCCCCTATGAACATCCGAATTT 57.211 40.909 0.00 0.00 0.00 1.82
298 299 5.124036 TCCCCTATGAACATCCGAATTTT 57.876 39.130 0.00 0.00 0.00 1.82
299 300 4.887071 TCCCCTATGAACATCCGAATTTTG 59.113 41.667 0.00 0.00 0.00 2.44
300 301 4.499696 CCCCTATGAACATCCGAATTTTGC 60.500 45.833 0.00 0.00 0.00 3.68
301 302 4.097741 CCCTATGAACATCCGAATTTTGCA 59.902 41.667 0.00 0.00 0.00 4.08
302 303 5.394005 CCCTATGAACATCCGAATTTTGCAA 60.394 40.000 0.00 0.00 0.00 4.08
303 304 5.745294 CCTATGAACATCCGAATTTTGCAAG 59.255 40.000 0.00 0.00 0.00 4.01
304 305 4.844998 TGAACATCCGAATTTTGCAAGA 57.155 36.364 0.00 0.00 0.00 3.02
305 306 4.545610 TGAACATCCGAATTTTGCAAGAC 58.454 39.130 0.00 0.00 0.00 3.01
306 307 4.037327 TGAACATCCGAATTTTGCAAGACA 59.963 37.500 0.00 0.00 0.00 3.41
307 308 4.164822 ACATCCGAATTTTGCAAGACAG 57.835 40.909 0.00 0.00 0.00 3.51
308 309 3.569701 ACATCCGAATTTTGCAAGACAGT 59.430 39.130 0.00 0.00 0.00 3.55
309 310 3.624326 TCCGAATTTTGCAAGACAGTG 57.376 42.857 0.00 0.00 0.00 3.66
310 311 2.053627 CCGAATTTTGCAAGACAGTGC 58.946 47.619 0.00 0.00 45.15 4.40
311 312 2.053627 CGAATTTTGCAAGACAGTGCC 58.946 47.619 0.00 0.00 44.26 5.01
312 313 2.053627 GAATTTTGCAAGACAGTGCCG 58.946 47.619 0.00 0.00 44.26 5.69
313 314 1.317613 ATTTTGCAAGACAGTGCCGA 58.682 45.000 0.00 0.00 44.26 5.54
314 315 0.662619 TTTTGCAAGACAGTGCCGAG 59.337 50.000 0.00 0.00 44.26 4.63
315 316 0.179059 TTTGCAAGACAGTGCCGAGA 60.179 50.000 0.00 0.00 44.26 4.04
316 317 0.601046 TTGCAAGACAGTGCCGAGAG 60.601 55.000 0.00 0.00 44.26 3.20
317 318 1.290324 GCAAGACAGTGCCGAGAGA 59.710 57.895 0.00 0.00 38.66 3.10
318 319 0.319900 GCAAGACAGTGCCGAGAGAA 60.320 55.000 0.00 0.00 38.66 2.87
319 320 1.873903 GCAAGACAGTGCCGAGAGAAA 60.874 52.381 0.00 0.00 38.66 2.52
320 321 2.064762 CAAGACAGTGCCGAGAGAAAG 58.935 52.381 0.00 0.00 0.00 2.62
321 322 1.621992 AGACAGTGCCGAGAGAAAGA 58.378 50.000 0.00 0.00 0.00 2.52
322 323 1.964223 AGACAGTGCCGAGAGAAAGAA 59.036 47.619 0.00 0.00 0.00 2.52
323 324 2.365617 AGACAGTGCCGAGAGAAAGAAA 59.634 45.455 0.00 0.00 0.00 2.52
324 325 3.131396 GACAGTGCCGAGAGAAAGAAAA 58.869 45.455 0.00 0.00 0.00 2.29
325 326 3.744660 ACAGTGCCGAGAGAAAGAAAAT 58.255 40.909 0.00 0.00 0.00 1.82
326 327 4.894784 ACAGTGCCGAGAGAAAGAAAATA 58.105 39.130 0.00 0.00 0.00 1.40
327 328 4.691216 ACAGTGCCGAGAGAAAGAAAATAC 59.309 41.667 0.00 0.00 0.00 1.89
328 329 4.932200 CAGTGCCGAGAGAAAGAAAATACT 59.068 41.667 0.00 0.00 0.00 2.12
329 330 6.100004 CAGTGCCGAGAGAAAGAAAATACTA 58.900 40.000 0.00 0.00 0.00 1.82
330 331 6.254589 CAGTGCCGAGAGAAAGAAAATACTAG 59.745 42.308 0.00 0.00 0.00 2.57
331 332 6.153000 AGTGCCGAGAGAAAGAAAATACTAGA 59.847 38.462 0.00 0.00 0.00 2.43
332 333 6.474102 GTGCCGAGAGAAAGAAAATACTAGAG 59.526 42.308 0.00 0.00 0.00 2.43
333 334 6.377429 TGCCGAGAGAAAGAAAATACTAGAGA 59.623 38.462 0.00 0.00 0.00 3.10
334 335 7.093902 TGCCGAGAGAAAGAAAATACTAGAGAA 60.094 37.037 0.00 0.00 0.00 2.87
335 336 7.434013 GCCGAGAGAAAGAAAATACTAGAGAAG 59.566 40.741 0.00 0.00 0.00 2.85
336 337 8.463607 CCGAGAGAAAGAAAATACTAGAGAAGT 58.536 37.037 0.00 0.00 42.62 3.01
337 338 9.849166 CGAGAGAAAGAAAATACTAGAGAAGTT 57.151 33.333 0.00 0.00 39.80 2.66
370 371 9.017509 TGTACCATAATTCTACTTACTATCCCG 57.982 37.037 0.00 0.00 0.00 5.14
371 372 9.236006 GTACCATAATTCTACTTACTATCCCGA 57.764 37.037 0.00 0.00 0.00 5.14
372 373 8.716674 ACCATAATTCTACTTACTATCCCGAA 57.283 34.615 0.00 0.00 0.00 4.30
373 374 9.151177 ACCATAATTCTACTTACTATCCCGAAA 57.849 33.333 0.00 0.00 0.00 3.46
374 375 9.991906 CCATAATTCTACTTACTATCCCGAAAA 57.008 33.333 0.00 0.00 0.00 2.29
378 379 9.729281 AATTCTACTTACTATCCCGAAAAACAA 57.271 29.630 0.00 0.00 0.00 2.83
379 380 8.538409 TTCTACTTACTATCCCGAAAAACAAC 57.462 34.615 0.00 0.00 0.00 3.32
380 381 7.899973 TCTACTTACTATCCCGAAAAACAACT 58.100 34.615 0.00 0.00 0.00 3.16
381 382 6.796705 ACTTACTATCCCGAAAAACAACTG 57.203 37.500 0.00 0.00 0.00 3.16
382 383 6.527423 ACTTACTATCCCGAAAAACAACTGA 58.473 36.000 0.00 0.00 0.00 3.41
383 384 6.993902 ACTTACTATCCCGAAAAACAACTGAA 59.006 34.615 0.00 0.00 0.00 3.02
384 385 7.664318 ACTTACTATCCCGAAAAACAACTGAAT 59.336 33.333 0.00 0.00 0.00 2.57
385 386 9.158233 CTTACTATCCCGAAAAACAACTGAATA 57.842 33.333 0.00 0.00 0.00 1.75
386 387 7.373778 ACTATCCCGAAAAACAACTGAATAC 57.626 36.000 0.00 0.00 0.00 1.89
387 388 5.638596 ATCCCGAAAAACAACTGAATACC 57.361 39.130 0.00 0.00 0.00 2.73
388 389 4.721132 TCCCGAAAAACAACTGAATACCT 58.279 39.130 0.00 0.00 0.00 3.08
389 390 4.517453 TCCCGAAAAACAACTGAATACCTG 59.483 41.667 0.00 0.00 0.00 4.00
390 391 4.226761 CCGAAAAACAACTGAATACCTGC 58.773 43.478 0.00 0.00 0.00 4.85
391 392 4.226761 CGAAAAACAACTGAATACCTGCC 58.773 43.478 0.00 0.00 0.00 4.85
392 393 4.261405 CGAAAAACAACTGAATACCTGCCA 60.261 41.667 0.00 0.00 0.00 4.92
393 394 5.564651 CGAAAAACAACTGAATACCTGCCAT 60.565 40.000 0.00 0.00 0.00 4.40
394 395 6.348950 CGAAAAACAACTGAATACCTGCCATA 60.349 38.462 0.00 0.00 0.00 2.74
395 396 6.909550 AAAACAACTGAATACCTGCCATAA 57.090 33.333 0.00 0.00 0.00 1.90
396 397 7.480760 AAAACAACTGAATACCTGCCATAAT 57.519 32.000 0.00 0.00 0.00 1.28
397 398 8.588290 AAAACAACTGAATACCTGCCATAATA 57.412 30.769 0.00 0.00 0.00 0.98
398 399 7.568199 AACAACTGAATACCTGCCATAATAC 57.432 36.000 0.00 0.00 0.00 1.89
399 400 6.900194 ACAACTGAATACCTGCCATAATACT 58.100 36.000 0.00 0.00 0.00 2.12
400 401 6.992715 ACAACTGAATACCTGCCATAATACTC 59.007 38.462 0.00 0.00 0.00 2.59
401 402 5.784177 ACTGAATACCTGCCATAATACTCG 58.216 41.667 0.00 0.00 0.00 4.18
402 403 4.566004 TGAATACCTGCCATAATACTCGC 58.434 43.478 0.00 0.00 0.00 5.03
403 404 2.717580 TACCTGCCATAATACTCGCG 57.282 50.000 0.00 0.00 0.00 5.87
404 405 0.033504 ACCTGCCATAATACTCGCGG 59.966 55.000 6.13 0.00 0.00 6.46
405 406 1.291877 CCTGCCATAATACTCGCGGC 61.292 60.000 6.13 0.00 43.28 6.53
406 407 1.617755 CTGCCATAATACTCGCGGCG 61.618 60.000 17.70 17.70 46.02 6.46
407 408 1.663702 GCCATAATACTCGCGGCGT 60.664 57.895 22.90 6.50 32.14 5.68
408 409 1.615107 GCCATAATACTCGCGGCGTC 61.615 60.000 22.90 0.00 32.14 5.19
409 410 0.039437 CCATAATACTCGCGGCGTCT 60.039 55.000 22.90 10.79 0.00 4.18
410 411 1.053048 CATAATACTCGCGGCGTCTG 58.947 55.000 22.90 15.41 0.00 3.51
411 412 0.666913 ATAATACTCGCGGCGTCTGT 59.333 50.000 22.90 19.86 0.00 3.41
412 413 0.452987 TAATACTCGCGGCGTCTGTT 59.547 50.000 22.90 14.24 0.00 3.16
413 414 1.076533 AATACTCGCGGCGTCTGTTG 61.077 55.000 22.90 9.05 0.00 3.33
414 415 1.929806 ATACTCGCGGCGTCTGTTGA 61.930 55.000 22.90 6.57 0.00 3.18
415 416 1.929806 TACTCGCGGCGTCTGTTGAT 61.930 55.000 22.90 2.91 0.00 2.57
416 417 2.048597 TCGCGGCGTCTGTTGATT 60.049 55.556 22.90 0.00 0.00 2.57
417 418 1.626654 CTCGCGGCGTCTGTTGATTT 61.627 55.000 22.90 0.00 0.00 2.17
418 419 1.509787 CGCGGCGTCTGTTGATTTG 60.510 57.895 15.36 0.00 0.00 2.32
419 420 1.797537 GCGGCGTCTGTTGATTTGC 60.798 57.895 9.37 0.00 0.00 3.68
420 421 1.154225 CGGCGTCTGTTGATTTGCC 60.154 57.895 0.00 0.00 35.72 4.52
421 422 1.154225 GGCGTCTGTTGATTTGCCG 60.154 57.895 0.00 0.00 31.62 5.69
422 423 1.574428 GCGTCTGTTGATTTGCCGT 59.426 52.632 0.00 0.00 0.00 5.68
423 424 0.725784 GCGTCTGTTGATTTGCCGTG 60.726 55.000 0.00 0.00 0.00 4.94
424 425 0.865111 CGTCTGTTGATTTGCCGTGA 59.135 50.000 0.00 0.00 0.00 4.35
425 426 1.136252 CGTCTGTTGATTTGCCGTGAG 60.136 52.381 0.00 0.00 0.00 3.51
426 427 0.874390 TCTGTTGATTTGCCGTGAGC 59.126 50.000 0.00 0.00 44.14 4.26
427 428 0.109597 CTGTTGATTTGCCGTGAGCC 60.110 55.000 0.00 0.00 42.71 4.70
433 434 4.752879 TTGCCGTGAGCCCTACGC 62.753 66.667 0.00 0.00 42.71 4.42
468 469 1.349259 CCAGAGAAAACGCGGTACCG 61.349 60.000 30.06 30.06 43.09 4.02
477 478 2.748647 GCGGTACCGGTGCCAATT 60.749 61.111 36.43 2.80 40.19 2.32
478 479 2.337246 GCGGTACCGGTGCCAATTT 61.337 57.895 36.43 1.98 40.19 1.82
533 535 3.368501 CCTCCCTCCTCCCCCTGA 61.369 72.222 0.00 0.00 0.00 3.86
576 579 2.610532 GATCCGCCAAGAACTCCCCC 62.611 65.000 0.00 0.00 0.00 5.40
577 580 4.778143 CCGCCAAGAACTCCCCCG 62.778 72.222 0.00 0.00 0.00 5.73
581 584 4.426313 CAAGAACTCCCCCGCCCC 62.426 72.222 0.00 0.00 0.00 5.80
764 814 4.268644 TGATTGCGATCTCGTTTCTTGATC 59.731 41.667 15.08 0.00 42.22 2.92
788 838 2.656651 CGCGCGCTGCTAATCTCT 60.657 61.111 30.48 0.00 43.27 3.10
796 846 2.622436 GCTGCTAATCTCTCCGTGTTT 58.378 47.619 0.00 0.00 0.00 2.83
829 882 1.136500 GAAATCCTCTCCGCGTTAGGT 59.864 52.381 15.61 4.08 0.00 3.08
830 883 1.192428 AATCCTCTCCGCGTTAGGTT 58.808 50.000 15.61 7.27 0.00 3.50
883 951 2.125552 CGTCTGCCTGCGAATCCA 60.126 61.111 0.00 0.00 0.00 3.41
886 954 0.379669 GTCTGCCTGCGAATCCATTG 59.620 55.000 0.00 0.00 0.00 2.82
887 955 1.065273 CTGCCTGCGAATCCATTGC 59.935 57.895 0.00 0.00 0.00 3.56
888 956 1.378911 TGCCTGCGAATCCATTGCT 60.379 52.632 0.00 0.00 0.00 3.91
889 957 1.358046 GCCTGCGAATCCATTGCTC 59.642 57.895 0.00 0.00 0.00 4.26
918 986 6.808212 CGATTTAGGGTTACTTTCGTGTAGAA 59.192 38.462 0.00 0.00 37.01 2.10
919 987 7.490402 CGATTTAGGGTTACTTTCGTGTAGAAT 59.510 37.037 0.00 0.00 38.86 2.40
925 993 2.173519 ACTTTCGTGTAGAATCCCGGA 58.826 47.619 0.73 0.00 38.86 5.14
936 1004 1.264288 GAATCCCGGATCGAATTGCAC 59.736 52.381 0.73 0.00 0.00 4.57
941 1009 0.302890 CGGATCGAATTGCACTGCTC 59.697 55.000 1.98 0.00 0.00 4.26
942 1010 1.661341 GGATCGAATTGCACTGCTCT 58.339 50.000 1.98 0.00 0.00 4.09
943 1011 1.329906 GGATCGAATTGCACTGCTCTG 59.670 52.381 1.98 0.00 0.00 3.35
944 1012 2.005451 GATCGAATTGCACTGCTCTGT 58.995 47.619 1.98 0.00 0.00 3.41
945 1013 1.150827 TCGAATTGCACTGCTCTGTG 58.849 50.000 1.98 3.00 40.62 3.66
951 1019 4.694233 CACTGCTCTGTGCGCCCT 62.694 66.667 4.18 0.00 46.63 5.19
952 1020 4.694233 ACTGCTCTGTGCGCCCTG 62.694 66.667 4.18 0.00 46.63 4.45
960 1028 3.512516 GTGCGCCCTGATCTTGCC 61.513 66.667 4.18 0.00 0.00 4.52
1211 1279 1.440060 CCCGATCGATCCCGTTTCA 59.560 57.895 18.66 0.00 37.05 2.69
1230 1299 1.971695 CCCTTTCGCCTGTTGTCCC 60.972 63.158 0.00 0.00 0.00 4.46
1280 1354 2.104111 TGACTGAACGGGTGTGAATCTT 59.896 45.455 0.00 0.00 0.00 2.40
1393 1469 1.755393 AAGGACAGGAAGAACGCGGT 61.755 55.000 12.47 1.91 0.00 5.68
1585 1667 3.220110 GTCGATACATCCCTCAGGTACA 58.780 50.000 0.00 0.00 0.00 2.90
1587 1669 3.117625 TCGATACATCCCTCAGGTACAGT 60.118 47.826 0.00 0.00 0.00 3.55
1672 1763 5.806366 TGATTACTGACTTGATGTGCATG 57.194 39.130 0.00 0.00 0.00 4.06
1721 1816 3.785859 TGGATGCGCCAGACCTCC 61.786 66.667 4.18 2.05 43.33 4.30
1841 1936 3.093814 TCTACATCCGAGCTTGTTACCA 58.906 45.455 0.00 0.00 0.00 3.25
1876 1971 1.900486 GGCCCTGTCACTAGTGTTAGT 59.100 52.381 21.99 0.00 40.79 2.24
1974 2069 3.491964 CGACTGGTTGGTACTTCTTGACA 60.492 47.826 0.00 0.00 0.00 3.58
2012 2605 8.615211 TGTTATAATTCTCTGTTAGCAGCATTG 58.385 33.333 0.97 0.00 42.29 2.82
2015 2611 5.557891 ATTCTCTGTTAGCAGCATTGTTC 57.442 39.130 0.97 0.00 42.29 3.18
2019 2615 4.136796 TCTGTTAGCAGCATTGTTCTTGT 58.863 39.130 0.97 0.00 42.29 3.16
2097 2700 1.088306 GTCGAGAGTCGGATCACTGT 58.912 55.000 0.00 0.00 40.88 3.55
2171 2774 5.301835 ACAATGATGTGAGGATTAGGGAG 57.698 43.478 0.00 0.00 38.69 4.30
2456 3059 1.651987 AGTTCTGGAACACACACACG 58.348 50.000 14.67 0.00 43.47 4.49
2690 3300 5.744666 TTGTAGCTAGGTTTGAAACACAC 57.255 39.130 10.53 0.00 0.00 3.82
2731 3341 3.820467 TGGCTTATGGTTGTCTTCTGTTG 59.180 43.478 0.00 0.00 0.00 3.33
2769 3577 3.747976 GGTTGCACGGTGGCATCC 61.748 66.667 10.60 12.23 44.48 3.51
2796 3604 2.048127 GACGAGACCCTGCGCTTT 60.048 61.111 9.73 0.00 0.00 3.51
2945 3792 8.087982 TGACAAGAAGTAGCTGATTTTACTTG 57.912 34.615 2.08 0.00 39.52 3.16
2961 3808 7.532682 TTTTACTTGGAAATTCTTTGTGTGC 57.467 32.000 0.00 0.00 0.00 4.57
2991 3838 6.650120 AGTATTTGTGGGTACTTCAGTATGG 58.350 40.000 0.00 0.00 36.16 2.74
3145 4210 5.175126 CGTTTGAGAGTATTCGAACTGTTGT 59.825 40.000 0.00 0.00 38.68 3.32
3146 4211 6.292168 CGTTTGAGAGTATTCGAACTGTTGTT 60.292 38.462 0.00 0.00 38.68 2.83
3147 4212 6.525121 TTGAGAGTATTCGAACTGTTGTTG 57.475 37.500 0.00 0.00 36.39 3.33
3149 4214 3.746492 AGAGTATTCGAACTGTTGTTGCC 59.254 43.478 0.00 0.00 36.39 4.52
3150 4215 3.740115 AGTATTCGAACTGTTGTTGCCT 58.260 40.909 0.00 0.00 36.39 4.75
3151 4216 3.746492 AGTATTCGAACTGTTGTTGCCTC 59.254 43.478 0.00 0.00 36.39 4.70
3152 4217 1.305201 TTCGAACTGTTGTTGCCTCC 58.695 50.000 0.00 0.00 36.39 4.30
3153 4218 0.534203 TCGAACTGTTGTTGCCTCCC 60.534 55.000 0.00 0.00 36.39 4.30
3184 4249 5.115480 TCTTTGTTGCTTTTGATGTTTCCC 58.885 37.500 0.00 0.00 0.00 3.97
3200 4267 1.104577 TCCCGTTGACTGGTTTTGCC 61.105 55.000 0.00 0.00 37.90 4.52
3202 4269 1.657181 CGTTGACTGGTTTTGCCGC 60.657 57.895 0.00 0.00 41.21 6.53
3210 4277 2.051345 GTTTTGCCGCTGACGTGG 60.051 61.111 0.00 0.00 43.83 4.94
3254 4321 3.296322 TTTGGTTGCCTTCTTTATGCG 57.704 42.857 0.00 0.00 0.00 4.73
3256 4323 1.173913 GGTTGCCTTCTTTATGCGGT 58.826 50.000 0.00 0.00 0.00 5.68
3285 4362 4.340617 CCACCACCACTATTTTACCATGT 58.659 43.478 0.00 0.00 0.00 3.21
3286 4363 4.770010 CCACCACCACTATTTTACCATGTT 59.230 41.667 0.00 0.00 0.00 2.71
3287 4364 5.946972 CCACCACCACTATTTTACCATGTTA 59.053 40.000 0.00 0.00 0.00 2.41
3343 4425 4.525996 TGCAATGGAAGCTGTGTATGTAT 58.474 39.130 0.00 0.00 0.00 2.29
3358 4440 6.119536 GTGTATGTATTCCCACTGAATCCAA 58.880 40.000 0.00 0.00 42.75 3.53
3406 4488 0.825010 CTTCAGGTTGTGCCAGGCTT 60.825 55.000 14.15 0.00 40.61 4.35
3418 4553 1.962144 CAGGCTTGGAGTGGCAAAG 59.038 57.895 0.00 0.00 0.00 2.77
3454 4589 3.766591 TCTTGGGCTTGTTTCAGTCAAAA 59.233 39.130 0.00 0.00 0.00 2.44
3455 4590 4.221703 TCTTGGGCTTGTTTCAGTCAAAAA 59.778 37.500 0.00 0.00 0.00 1.94
3477 4612 0.036732 AATGTGCATCTCGTGGTGGT 59.963 50.000 0.00 0.00 0.00 4.16
3479 4614 0.884259 TGTGCATCTCGTGGTGGTTG 60.884 55.000 0.00 0.00 0.00 3.77
3504 4646 1.032014 GTGGCAGATGGTGTTTGTGT 58.968 50.000 0.00 0.00 0.00 3.72
3505 4647 1.031235 TGGCAGATGGTGTTTGTGTG 58.969 50.000 0.00 0.00 0.00 3.82
3516 4658 2.226437 GTGTTTGTGTGCCGATCAGATT 59.774 45.455 0.00 0.00 0.00 2.40
3523 4665 2.027653 TGTGCCGATCAGATTACAACCA 60.028 45.455 0.00 0.00 0.00 3.67
3524 4666 3.006940 GTGCCGATCAGATTACAACCAA 58.993 45.455 0.00 0.00 0.00 3.67
3525 4667 3.006940 TGCCGATCAGATTACAACCAAC 58.993 45.455 0.00 0.00 0.00 3.77
3526 4668 2.354821 GCCGATCAGATTACAACCAACC 59.645 50.000 0.00 0.00 0.00 3.77
3527 4669 3.605634 CCGATCAGATTACAACCAACCA 58.394 45.455 0.00 0.00 0.00 3.67
3548 4694 5.406175 ACCAAAACATTCGCAAAATCAGATG 59.594 36.000 0.00 0.00 0.00 2.90
3556 4702 1.533338 GCAAAATCAGATGAGCAGCGG 60.533 52.381 0.00 0.00 0.00 5.52
3582 4731 4.970860 ATCCCATGAGATTACCAGTGAG 57.029 45.455 0.00 0.00 0.00 3.51
3605 4758 7.288852 TGAGATTTACCATTTCTCCAACCAAAA 59.711 33.333 0.00 0.00 35.99 2.44
3611 4764 4.475944 CATTTCTCCAACCAAAAGTAGCG 58.524 43.478 0.00 0.00 0.00 4.26
3725 4878 2.556840 ATCCTGGCCGTCCAATGGTG 62.557 60.000 0.00 0.00 42.91 4.17
3730 4883 3.430862 CCGTCCAATGGTGGCACG 61.431 66.667 12.17 1.33 45.54 5.34
3731 4884 4.101790 CGTCCAATGGTGGCACGC 62.102 66.667 12.17 5.35 45.54 5.34
3732 4885 4.101790 GTCCAATGGTGGCACGCG 62.102 66.667 12.17 3.53 45.54 6.01
3748 4901 2.464459 GCGCATGGTTCCTCTTCCG 61.464 63.158 0.30 0.00 0.00 4.30
3774 4927 4.344865 ACCGGCCATCACCACCAC 62.345 66.667 0.00 0.00 0.00 4.16
3776 4929 4.343323 CGGCCATCACCACCACCA 62.343 66.667 2.24 0.00 0.00 4.17
3777 4930 2.117206 GGCCATCACCACCACCAA 59.883 61.111 0.00 0.00 0.00 3.67
3779 4932 1.228552 GCCATCACCACCACCAAGT 60.229 57.895 0.00 0.00 0.00 3.16
3780 4933 1.244019 GCCATCACCACCACCAAGTC 61.244 60.000 0.00 0.00 0.00 3.01
3781 4934 0.955428 CCATCACCACCACCAAGTCG 60.955 60.000 0.00 0.00 0.00 4.18
3782 4935 1.302511 ATCACCACCACCAAGTCGC 60.303 57.895 0.00 0.00 0.00 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.277098 TGTTAGACAAGTGTAAACAGTTCTGTC 59.723 37.037 12.04 12.04 37.41 3.51
1 2 7.064253 GTGTTAGACAAGTGTAAACAGTTCTGT 59.936 37.037 10.52 0.00 37.41 3.41
2 3 7.064134 TGTGTTAGACAAGTGTAAACAGTTCTG 59.936 37.037 10.52 0.00 37.41 3.02
3 4 7.101054 TGTGTTAGACAAGTGTAAACAGTTCT 58.899 34.615 10.52 0.00 37.41 3.01
5 6 7.675962 TTGTGTTAGACAAGTGTAAACAGTT 57.324 32.000 10.52 0.00 39.78 3.16
18 19 4.188462 CGGGCAGATTATTGTGTTAGACA 58.812 43.478 0.00 0.00 0.00 3.41
19 20 4.189231 ACGGGCAGATTATTGTGTTAGAC 58.811 43.478 0.00 0.00 0.00 2.59
20 21 4.481368 ACGGGCAGATTATTGTGTTAGA 57.519 40.909 0.00 0.00 0.00 2.10
21 22 4.876107 AGAACGGGCAGATTATTGTGTTAG 59.124 41.667 0.00 0.00 0.00 2.34
22 23 4.839121 AGAACGGGCAGATTATTGTGTTA 58.161 39.130 0.00 0.00 0.00 2.41
23 24 3.686016 AGAACGGGCAGATTATTGTGTT 58.314 40.909 0.00 0.00 0.00 3.32
24 25 3.270877 GAGAACGGGCAGATTATTGTGT 58.729 45.455 0.00 0.00 0.00 3.72
25 26 2.285220 CGAGAACGGGCAGATTATTGTG 59.715 50.000 0.00 0.00 35.72 3.33
26 27 2.550978 CGAGAACGGGCAGATTATTGT 58.449 47.619 0.00 0.00 35.72 2.71
39 40 1.411493 GCGACTTTAGGCCGAGAACG 61.411 60.000 10.27 13.83 39.43 3.95
40 41 1.082679 GGCGACTTTAGGCCGAGAAC 61.083 60.000 10.27 4.15 39.93 3.01
41 42 1.217244 GGCGACTTTAGGCCGAGAA 59.783 57.895 10.27 0.00 39.93 2.87
42 43 2.890371 GGCGACTTTAGGCCGAGA 59.110 61.111 10.27 0.00 39.93 4.04
47 48 1.644786 AATGCGTGGCGACTTTAGGC 61.645 55.000 0.00 0.00 0.00 3.93
48 49 0.802494 AAATGCGTGGCGACTTTAGG 59.198 50.000 0.00 0.00 0.00 2.69
49 50 1.732259 AGAAATGCGTGGCGACTTTAG 59.268 47.619 0.00 0.00 0.00 1.85
50 51 1.463056 CAGAAATGCGTGGCGACTTTA 59.537 47.619 0.00 0.00 0.00 1.85
51 52 0.238289 CAGAAATGCGTGGCGACTTT 59.762 50.000 0.00 0.00 0.00 2.66
52 53 0.884704 ACAGAAATGCGTGGCGACTT 60.885 50.000 0.00 0.00 0.00 3.01
53 54 0.884704 AACAGAAATGCGTGGCGACT 60.885 50.000 0.00 0.00 0.00 4.18
54 55 0.452784 GAACAGAAATGCGTGGCGAC 60.453 55.000 0.00 0.00 0.00 5.19
55 56 1.866237 GAACAGAAATGCGTGGCGA 59.134 52.632 0.00 0.00 0.00 5.54
56 57 1.509787 CGAACAGAAATGCGTGGCG 60.510 57.895 0.00 0.00 0.00 5.69
57 58 1.154225 CCGAACAGAAATGCGTGGC 60.154 57.895 0.00 0.00 0.00 5.01
58 59 1.501741 CCCGAACAGAAATGCGTGG 59.498 57.895 0.00 0.00 0.00 4.94
59 60 1.154225 GCCCGAACAGAAATGCGTG 60.154 57.895 0.00 0.00 0.00 5.34
60 61 0.036765 TAGCCCGAACAGAAATGCGT 60.037 50.000 0.00 0.00 0.00 5.24
61 62 1.083489 TTAGCCCGAACAGAAATGCG 58.917 50.000 0.00 0.00 0.00 4.73
62 63 1.202031 CGTTAGCCCGAACAGAAATGC 60.202 52.381 0.00 0.00 0.00 3.56
63 64 1.202031 GCGTTAGCCCGAACAGAAATG 60.202 52.381 0.00 0.00 37.42 2.32
64 65 1.084289 GCGTTAGCCCGAACAGAAAT 58.916 50.000 0.00 0.00 37.42 2.17
65 66 1.286354 CGCGTTAGCCCGAACAGAAA 61.286 55.000 0.00 0.00 41.18 2.52
66 67 1.735198 CGCGTTAGCCCGAACAGAA 60.735 57.895 0.00 0.00 41.18 3.02
67 68 2.126228 CGCGTTAGCCCGAACAGA 60.126 61.111 0.00 0.00 41.18 3.41
68 69 3.849953 GCGCGTTAGCCCGAACAG 61.850 66.667 8.43 0.00 41.18 3.16
69 70 3.943479 ATGCGCGTTAGCCCGAACA 62.943 57.895 8.43 0.00 41.18 3.18
70 71 3.192922 ATGCGCGTTAGCCCGAAC 61.193 61.111 8.43 0.00 41.18 3.95
71 72 3.192230 CATGCGCGTTAGCCCGAA 61.192 61.111 8.43 0.00 41.18 4.30
76 77 0.028770 TTTATGGCATGCGCGTTAGC 59.971 50.000 12.44 9.21 39.92 3.09
77 78 2.574322 GATTTATGGCATGCGCGTTAG 58.426 47.619 12.44 0.00 39.92 2.34
78 79 1.265635 GGATTTATGGCATGCGCGTTA 59.734 47.619 12.44 0.00 39.92 3.18
79 80 0.030638 GGATTTATGGCATGCGCGTT 59.969 50.000 12.44 0.00 39.92 4.84
80 81 1.100463 TGGATTTATGGCATGCGCGT 61.100 50.000 12.44 8.75 39.92 6.01
81 82 0.030504 TTGGATTTATGGCATGCGCG 59.969 50.000 12.44 0.00 39.92 6.86
82 83 2.222007 TTTGGATTTATGGCATGCGC 57.778 45.000 12.44 0.00 37.44 6.09
83 84 3.552699 CAGTTTTGGATTTATGGCATGCG 59.447 43.478 12.44 0.00 0.00 4.73
95 96 7.699278 ATTCGTGTGAAATCCCAGTTTTGGAT 61.699 38.462 0.00 0.00 44.55 3.41
96 97 6.444002 ATTCGTGTGAAATCCCAGTTTTGGA 61.444 40.000 0.00 0.00 41.50 3.53
97 98 2.621055 TCGTGTGAAATCCCAGTTTTGG 59.379 45.455 0.00 0.00 44.60 3.28
98 99 3.980646 TCGTGTGAAATCCCAGTTTTG 57.019 42.857 0.00 0.00 0.00 2.44
99 100 5.529581 AATTCGTGTGAAATCCCAGTTTT 57.470 34.783 0.00 0.00 37.71 2.43
100 101 5.529581 AAATTCGTGTGAAATCCCAGTTT 57.470 34.783 0.00 0.00 37.71 2.66
101 102 5.288804 CAAAATTCGTGTGAAATCCCAGTT 58.711 37.500 0.00 0.00 37.71 3.16
102 103 4.795962 GCAAAATTCGTGTGAAATCCCAGT 60.796 41.667 0.00 0.00 37.71 4.00
103 104 3.674753 GCAAAATTCGTGTGAAATCCCAG 59.325 43.478 0.00 0.00 37.71 4.45
104 105 3.648009 GCAAAATTCGTGTGAAATCCCA 58.352 40.909 0.00 0.00 37.71 4.37
105 106 2.661195 CGCAAAATTCGTGTGAAATCCC 59.339 45.455 0.00 0.00 37.71 3.85
106 107 3.560503 TCGCAAAATTCGTGTGAAATCC 58.439 40.909 3.52 0.00 37.71 3.01
107 108 4.463209 TCTCGCAAAATTCGTGTGAAATC 58.537 39.130 6.75 0.00 37.71 2.17
108 109 4.213270 TCTCTCGCAAAATTCGTGTGAAAT 59.787 37.500 6.75 0.00 37.71 2.17
109 110 3.558006 TCTCTCGCAAAATTCGTGTGAAA 59.442 39.130 6.75 0.00 37.71 2.69
110 111 3.127589 TCTCTCGCAAAATTCGTGTGAA 58.872 40.909 6.75 0.00 35.22 3.18
111 112 2.749776 TCTCTCGCAAAATTCGTGTGA 58.250 42.857 5.51 5.51 34.47 3.58
112 113 3.729526 ATCTCTCGCAAAATTCGTGTG 57.270 42.857 0.00 0.00 0.00 3.82
113 114 3.120199 CCAATCTCTCGCAAAATTCGTGT 60.120 43.478 0.00 0.00 0.00 4.49
114 115 3.125146 TCCAATCTCTCGCAAAATTCGTG 59.875 43.478 0.00 0.00 0.00 4.35
115 116 3.334691 TCCAATCTCTCGCAAAATTCGT 58.665 40.909 0.00 0.00 0.00 3.85
116 117 4.340894 TTCCAATCTCTCGCAAAATTCG 57.659 40.909 0.00 0.00 0.00 3.34
117 118 5.574443 CCTTTTCCAATCTCTCGCAAAATTC 59.426 40.000 0.00 0.00 0.00 2.17
118 119 5.243730 TCCTTTTCCAATCTCTCGCAAAATT 59.756 36.000 0.00 0.00 0.00 1.82
119 120 4.766891 TCCTTTTCCAATCTCTCGCAAAAT 59.233 37.500 0.00 0.00 0.00 1.82
120 121 4.141287 TCCTTTTCCAATCTCTCGCAAAA 58.859 39.130 0.00 0.00 0.00 2.44
121 122 3.750371 TCCTTTTCCAATCTCTCGCAAA 58.250 40.909 0.00 0.00 0.00 3.68
122 123 3.417069 TCCTTTTCCAATCTCTCGCAA 57.583 42.857 0.00 0.00 0.00 4.85
123 124 3.417069 TTCCTTTTCCAATCTCTCGCA 57.583 42.857 0.00 0.00 0.00 5.10
124 125 4.972514 ATTTCCTTTTCCAATCTCTCGC 57.027 40.909 0.00 0.00 0.00 5.03
125 126 6.500684 TCAATTTCCTTTTCCAATCTCTCG 57.499 37.500 0.00 0.00 0.00 4.04
126 127 9.363763 GAATTCAATTTCCTTTTCCAATCTCTC 57.636 33.333 0.00 0.00 0.00 3.20
127 128 8.316946 GGAATTCAATTTCCTTTTCCAATCTCT 58.683 33.333 7.93 0.00 41.69 3.10
128 129 7.276438 CGGAATTCAATTTCCTTTTCCAATCTC 59.724 37.037 7.93 0.00 42.57 2.75
129 130 7.099120 CGGAATTCAATTTCCTTTTCCAATCT 58.901 34.615 7.93 0.00 42.57 2.40
130 131 6.873605 ACGGAATTCAATTTCCTTTTCCAATC 59.126 34.615 7.93 0.00 42.57 2.67
131 132 6.650390 CACGGAATTCAATTTCCTTTTCCAAT 59.350 34.615 7.93 0.00 42.57 3.16
132 133 5.988561 CACGGAATTCAATTTCCTTTTCCAA 59.011 36.000 7.93 0.00 42.57 3.53
133 134 5.303078 TCACGGAATTCAATTTCCTTTTCCA 59.697 36.000 7.93 0.00 42.57 3.53
134 135 5.633601 GTCACGGAATTCAATTTCCTTTTCC 59.366 40.000 7.93 0.00 42.57 3.13
135 136 5.342259 CGTCACGGAATTCAATTTCCTTTTC 59.658 40.000 7.93 0.00 42.57 2.29
136 137 5.219633 CGTCACGGAATTCAATTTCCTTTT 58.780 37.500 7.93 0.00 42.57 2.27
137 138 4.794169 CGTCACGGAATTCAATTTCCTTT 58.206 39.130 7.93 0.00 42.57 3.11
138 139 3.365969 GCGTCACGGAATTCAATTTCCTT 60.366 43.478 7.93 0.00 42.57 3.36
139 140 2.161609 GCGTCACGGAATTCAATTTCCT 59.838 45.455 7.93 0.00 42.57 3.36
140 141 2.095466 TGCGTCACGGAATTCAATTTCC 60.095 45.455 7.93 0.00 41.54 3.13
141 142 2.908626 GTGCGTCACGGAATTCAATTTC 59.091 45.455 7.93 0.00 0.00 2.17
142 143 2.292016 TGTGCGTCACGGAATTCAATTT 59.708 40.909 7.93 0.00 37.14 1.82
143 144 1.876799 TGTGCGTCACGGAATTCAATT 59.123 42.857 7.93 0.00 37.14 2.32
144 145 1.196808 GTGTGCGTCACGGAATTCAAT 59.803 47.619 7.93 0.00 37.14 2.57
145 146 0.584396 GTGTGCGTCACGGAATTCAA 59.416 50.000 7.93 0.00 37.14 2.69
146 147 2.230892 GTGTGCGTCACGGAATTCA 58.769 52.632 7.93 0.00 37.14 2.57
160 161 0.810648 GGGTATGGTGTGCATGTGTG 59.189 55.000 0.00 0.00 0.00 3.82
161 162 0.323360 GGGGTATGGTGTGCATGTGT 60.323 55.000 0.00 0.00 0.00 3.72
162 163 0.034186 AGGGGTATGGTGTGCATGTG 60.034 55.000 0.00 0.00 0.00 3.21
163 164 1.590591 TAGGGGTATGGTGTGCATGT 58.409 50.000 0.00 0.00 0.00 3.21
164 165 2.727123 TTAGGGGTATGGTGTGCATG 57.273 50.000 0.00 0.00 0.00 4.06
165 166 2.849943 TCTTTAGGGGTATGGTGTGCAT 59.150 45.455 0.00 0.00 0.00 3.96
166 167 2.238646 CTCTTTAGGGGTATGGTGTGCA 59.761 50.000 0.00 0.00 0.00 4.57
167 168 2.919228 CTCTTTAGGGGTATGGTGTGC 58.081 52.381 0.00 0.00 0.00 4.57
168 169 2.741878 CGCTCTTTAGGGGTATGGTGTG 60.742 54.545 0.00 0.00 32.16 3.82
169 170 1.485066 CGCTCTTTAGGGGTATGGTGT 59.515 52.381 0.00 0.00 32.16 4.16
170 171 1.760613 TCGCTCTTTAGGGGTATGGTG 59.239 52.381 0.00 0.00 36.36 4.17
171 172 2.040178 CTCGCTCTTTAGGGGTATGGT 58.960 52.381 0.00 0.00 36.36 3.55
172 173 1.344763 CCTCGCTCTTTAGGGGTATGG 59.655 57.143 0.00 0.00 36.36 2.74
173 174 2.297597 CTCCTCGCTCTTTAGGGGTATG 59.702 54.545 0.00 0.00 36.36 2.39
174 175 2.599677 CTCCTCGCTCTTTAGGGGTAT 58.400 52.381 0.00 0.00 36.36 2.73
175 176 2.027949 GCTCCTCGCTCTTTAGGGGTA 61.028 57.143 0.00 0.00 35.62 3.69
176 177 1.331399 GCTCCTCGCTCTTTAGGGGT 61.331 60.000 0.00 0.00 35.62 4.95
177 178 1.330655 TGCTCCTCGCTCTTTAGGGG 61.331 60.000 0.00 0.00 40.11 4.79
178 179 0.179097 GTGCTCCTCGCTCTTTAGGG 60.179 60.000 0.00 0.00 40.11 3.53
179 180 0.526524 CGTGCTCCTCGCTCTTTAGG 60.527 60.000 0.00 0.00 40.11 2.69
180 181 0.171455 ACGTGCTCCTCGCTCTTTAG 59.829 55.000 0.00 0.00 40.11 1.85
181 182 0.170561 GACGTGCTCCTCGCTCTTTA 59.829 55.000 0.00 0.00 40.11 1.85
182 183 1.080434 GACGTGCTCCTCGCTCTTT 60.080 57.895 0.00 0.00 40.11 2.52
183 184 1.928706 GAGACGTGCTCCTCGCTCTT 61.929 60.000 0.00 0.00 40.11 2.85
184 185 2.360600 AGACGTGCTCCTCGCTCT 60.361 61.111 0.00 0.00 40.11 4.09
185 186 2.101380 GAGACGTGCTCCTCGCTC 59.899 66.667 0.00 0.00 40.11 5.03
192 193 0.460987 CAATGGGAGGAGACGTGCTC 60.461 60.000 0.00 0.00 43.17 4.26
193 194 0.904865 TCAATGGGAGGAGACGTGCT 60.905 55.000 0.00 0.00 0.00 4.40
194 195 0.036388 TTCAATGGGAGGAGACGTGC 60.036 55.000 0.00 0.00 0.00 5.34
195 196 1.726853 GTTCAATGGGAGGAGACGTG 58.273 55.000 0.00 0.00 0.00 4.49
196 197 0.246635 CGTTCAATGGGAGGAGACGT 59.753 55.000 0.00 0.00 0.00 4.34
197 198 0.246635 ACGTTCAATGGGAGGAGACG 59.753 55.000 0.00 0.00 0.00 4.18
198 199 1.726853 CACGTTCAATGGGAGGAGAC 58.273 55.000 0.00 0.00 0.00 3.36
199 200 0.036388 GCACGTTCAATGGGAGGAGA 60.036 55.000 0.00 0.00 0.00 3.71
200 201 0.321564 TGCACGTTCAATGGGAGGAG 60.322 55.000 0.00 0.00 0.00 3.69
201 202 0.327924 ATGCACGTTCAATGGGAGGA 59.672 50.000 0.00 0.00 0.00 3.71
202 203 0.734889 GATGCACGTTCAATGGGAGG 59.265 55.000 0.00 0.00 0.00 4.30
203 204 1.131126 GTGATGCACGTTCAATGGGAG 59.869 52.381 0.00 0.00 0.00 4.30
204 205 1.164411 GTGATGCACGTTCAATGGGA 58.836 50.000 0.00 0.00 0.00 4.37
205 206 1.135603 CAGTGATGCACGTTCAATGGG 60.136 52.381 8.07 0.00 39.64 4.00
206 207 2.251869 CAGTGATGCACGTTCAATGG 57.748 50.000 8.07 0.00 39.64 3.16
207 208 1.805943 TCCAGTGATGCACGTTCAATG 59.194 47.619 8.82 8.82 39.64 2.82
208 209 2.183478 TCCAGTGATGCACGTTCAAT 57.817 45.000 0.00 0.00 39.64 2.57
209 210 1.960417 TTCCAGTGATGCACGTTCAA 58.040 45.000 0.00 0.00 39.64 2.69
210 211 1.960417 TTTCCAGTGATGCACGTTCA 58.040 45.000 0.00 0.00 39.64 3.18
211 212 2.744202 AGATTTCCAGTGATGCACGTTC 59.256 45.455 0.00 0.00 39.64 3.95
212 213 2.783135 AGATTTCCAGTGATGCACGTT 58.217 42.857 0.00 0.00 39.64 3.99
213 214 2.479566 AGATTTCCAGTGATGCACGT 57.520 45.000 0.00 0.00 39.64 4.49
214 215 2.743664 TCAAGATTTCCAGTGATGCACG 59.256 45.455 0.00 0.00 39.64 5.34
215 216 4.771590 TTCAAGATTTCCAGTGATGCAC 57.228 40.909 0.00 0.00 34.10 4.57
216 217 5.988310 ATTTCAAGATTTCCAGTGATGCA 57.012 34.783 0.00 0.00 0.00 3.96
217 218 7.276438 GGTTTATTTCAAGATTTCCAGTGATGC 59.724 37.037 0.00 0.00 0.00 3.91
218 219 7.485913 CGGTTTATTTCAAGATTTCCAGTGATG 59.514 37.037 0.00 0.00 0.00 3.07
219 220 7.176690 ACGGTTTATTTCAAGATTTCCAGTGAT 59.823 33.333 0.00 0.00 0.00 3.06
220 221 6.488683 ACGGTTTATTTCAAGATTTCCAGTGA 59.511 34.615 0.00 0.00 0.00 3.41
221 222 6.677913 ACGGTTTATTTCAAGATTTCCAGTG 58.322 36.000 0.00 0.00 0.00 3.66
222 223 6.348213 CGACGGTTTATTTCAAGATTTCCAGT 60.348 38.462 0.00 0.00 0.00 4.00
223 224 6.021596 CGACGGTTTATTTCAAGATTTCCAG 58.978 40.000 0.00 0.00 0.00 3.86
224 225 5.701750 TCGACGGTTTATTTCAAGATTTCCA 59.298 36.000 0.00 0.00 0.00 3.53
225 226 6.173191 TCGACGGTTTATTTCAAGATTTCC 57.827 37.500 0.00 0.00 0.00 3.13
226 227 6.522165 GGTTCGACGGTTTATTTCAAGATTTC 59.478 38.462 0.00 0.00 0.00 2.17
227 228 6.016943 TGGTTCGACGGTTTATTTCAAGATTT 60.017 34.615 0.00 0.00 0.00 2.17
228 229 5.470777 TGGTTCGACGGTTTATTTCAAGATT 59.529 36.000 0.00 0.00 0.00 2.40
229 230 4.998672 TGGTTCGACGGTTTATTTCAAGAT 59.001 37.500 0.00 0.00 0.00 2.40
230 231 4.378774 TGGTTCGACGGTTTATTTCAAGA 58.621 39.130 0.00 0.00 0.00 3.02
231 232 4.735662 TGGTTCGACGGTTTATTTCAAG 57.264 40.909 0.00 0.00 0.00 3.02
232 233 5.352016 CCTATGGTTCGACGGTTTATTTCAA 59.648 40.000 0.00 0.00 0.00 2.69
233 234 4.871557 CCTATGGTTCGACGGTTTATTTCA 59.128 41.667 0.00 0.00 0.00 2.69
234 235 4.872124 ACCTATGGTTCGACGGTTTATTTC 59.128 41.667 0.00 0.00 27.29 2.17
235 236 4.835678 ACCTATGGTTCGACGGTTTATTT 58.164 39.130 0.00 0.00 27.29 1.40
236 237 4.476628 ACCTATGGTTCGACGGTTTATT 57.523 40.909 0.00 0.00 27.29 1.40
237 238 4.186159 CAACCTATGGTTCGACGGTTTAT 58.814 43.478 0.00 0.00 43.05 1.40
238 239 3.587923 CAACCTATGGTTCGACGGTTTA 58.412 45.455 0.00 0.00 43.05 2.01
239 240 2.419667 CAACCTATGGTTCGACGGTTT 58.580 47.619 0.00 0.00 43.05 3.27
240 241 1.338389 CCAACCTATGGTTCGACGGTT 60.338 52.381 0.00 0.00 43.05 4.44
241 242 0.248289 CCAACCTATGGTTCGACGGT 59.752 55.000 0.00 0.00 43.05 4.83
242 243 3.059603 CCAACCTATGGTTCGACGG 57.940 57.895 0.00 0.00 43.05 4.79
250 251 5.921153 TCGATTTTGCGAACCAACCTATGG 61.921 45.833 0.00 0.00 44.58 2.74
251 252 3.126171 TCGATTTTGCGAACCAACCTATG 59.874 43.478 0.00 0.00 37.35 2.23
252 253 3.340034 TCGATTTTGCGAACCAACCTAT 58.660 40.909 0.00 0.00 37.35 2.57
253 254 2.768698 TCGATTTTGCGAACCAACCTA 58.231 42.857 0.00 0.00 37.35 3.08
254 255 1.600023 TCGATTTTGCGAACCAACCT 58.400 45.000 0.00 0.00 37.35 3.50
255 256 2.409152 TTCGATTTTGCGAACCAACC 57.591 45.000 0.00 0.00 44.43 3.77
262 263 2.122783 AGGGGAATTCGATTTTGCGA 57.877 45.000 0.00 0.00 38.72 5.10
263 264 3.563808 TCATAGGGGAATTCGATTTTGCG 59.436 43.478 0.00 0.00 0.00 4.85
264 265 5.163561 TGTTCATAGGGGAATTCGATTTTGC 60.164 40.000 0.00 0.00 0.00 3.68
265 266 6.449635 TGTTCATAGGGGAATTCGATTTTG 57.550 37.500 0.00 0.00 0.00 2.44
266 267 6.265422 GGATGTTCATAGGGGAATTCGATTTT 59.735 38.462 0.00 0.00 0.00 1.82
267 268 5.770162 GGATGTTCATAGGGGAATTCGATTT 59.230 40.000 0.00 0.00 0.00 2.17
268 269 5.316987 GGATGTTCATAGGGGAATTCGATT 58.683 41.667 0.00 0.00 0.00 3.34
269 270 4.563580 CGGATGTTCATAGGGGAATTCGAT 60.564 45.833 0.00 0.00 0.00 3.59
270 271 3.244078 CGGATGTTCATAGGGGAATTCGA 60.244 47.826 0.00 0.00 0.00 3.71
271 272 3.067106 CGGATGTTCATAGGGGAATTCG 58.933 50.000 0.00 0.00 0.00 3.34
272 273 4.351874 TCGGATGTTCATAGGGGAATTC 57.648 45.455 0.00 0.00 0.00 2.17
273 274 4.788925 TTCGGATGTTCATAGGGGAATT 57.211 40.909 0.00 0.00 0.00 2.17
274 275 5.324832 AATTCGGATGTTCATAGGGGAAT 57.675 39.130 0.00 0.00 0.00 3.01
275 276 4.788925 AATTCGGATGTTCATAGGGGAA 57.211 40.909 0.00 0.00 0.00 3.97
276 277 4.788925 AAATTCGGATGTTCATAGGGGA 57.211 40.909 0.00 0.00 0.00 4.81
277 278 4.499696 GCAAAATTCGGATGTTCATAGGGG 60.500 45.833 0.00 0.00 0.00 4.79
278 279 4.097741 TGCAAAATTCGGATGTTCATAGGG 59.902 41.667 0.00 0.00 0.00 3.53
279 280 5.247507 TGCAAAATTCGGATGTTCATAGG 57.752 39.130 0.00 0.00 0.00 2.57
280 281 6.470235 GTCTTGCAAAATTCGGATGTTCATAG 59.530 38.462 0.00 0.00 0.00 2.23
281 282 6.072230 TGTCTTGCAAAATTCGGATGTTCATA 60.072 34.615 0.00 0.00 0.00 2.15
282 283 5.163513 GTCTTGCAAAATTCGGATGTTCAT 58.836 37.500 0.00 0.00 0.00 2.57
283 284 4.037327 TGTCTTGCAAAATTCGGATGTTCA 59.963 37.500 0.00 0.00 0.00 3.18
284 285 4.545610 TGTCTTGCAAAATTCGGATGTTC 58.454 39.130 0.00 0.00 0.00 3.18
285 286 4.037923 ACTGTCTTGCAAAATTCGGATGTT 59.962 37.500 0.00 0.00 0.00 2.71
286 287 3.569701 ACTGTCTTGCAAAATTCGGATGT 59.430 39.130 0.00 0.00 0.00 3.06
287 288 3.916172 CACTGTCTTGCAAAATTCGGATG 59.084 43.478 0.00 0.00 0.00 3.51
288 289 3.612479 GCACTGTCTTGCAAAATTCGGAT 60.612 43.478 0.00 0.00 42.49 4.18
289 290 2.287547 GCACTGTCTTGCAAAATTCGGA 60.288 45.455 0.00 0.00 42.49 4.55
290 291 2.053627 GCACTGTCTTGCAAAATTCGG 58.946 47.619 0.00 0.00 42.49 4.30
291 292 2.053627 GGCACTGTCTTGCAAAATTCG 58.946 47.619 0.00 0.00 44.94 3.34
292 293 2.053627 CGGCACTGTCTTGCAAAATTC 58.946 47.619 0.00 0.00 44.94 2.17
293 294 1.680735 TCGGCACTGTCTTGCAAAATT 59.319 42.857 0.00 0.00 44.94 1.82
294 295 1.267806 CTCGGCACTGTCTTGCAAAAT 59.732 47.619 0.00 0.00 44.94 1.82
295 296 0.662619 CTCGGCACTGTCTTGCAAAA 59.337 50.000 0.00 0.00 44.94 2.44
296 297 0.179059 TCTCGGCACTGTCTTGCAAA 60.179 50.000 0.00 0.00 44.94 3.68
297 298 0.601046 CTCTCGGCACTGTCTTGCAA 60.601 55.000 0.00 0.00 44.94 4.08
298 299 1.005748 CTCTCGGCACTGTCTTGCA 60.006 57.895 0.00 0.00 44.94 4.08
299 300 0.319900 TTCTCTCGGCACTGTCTTGC 60.320 55.000 0.00 0.00 42.18 4.01
300 301 2.064762 CTTTCTCTCGGCACTGTCTTG 58.935 52.381 0.00 0.00 0.00 3.02
301 302 1.964223 TCTTTCTCTCGGCACTGTCTT 59.036 47.619 0.00 0.00 0.00 3.01
302 303 1.621992 TCTTTCTCTCGGCACTGTCT 58.378 50.000 0.00 0.00 0.00 3.41
303 304 2.440539 TTCTTTCTCTCGGCACTGTC 57.559 50.000 0.00 0.00 0.00 3.51
304 305 2.910688 TTTCTTTCTCTCGGCACTGT 57.089 45.000 0.00 0.00 0.00 3.55
305 306 4.932200 AGTATTTTCTTTCTCTCGGCACTG 59.068 41.667 0.00 0.00 0.00 3.66
306 307 5.153950 AGTATTTTCTTTCTCTCGGCACT 57.846 39.130 0.00 0.00 0.00 4.40
307 308 6.331061 TCTAGTATTTTCTTTCTCTCGGCAC 58.669 40.000 0.00 0.00 0.00 5.01
308 309 6.377429 TCTCTAGTATTTTCTTTCTCTCGGCA 59.623 38.462 0.00 0.00 0.00 5.69
309 310 6.797454 TCTCTAGTATTTTCTTTCTCTCGGC 58.203 40.000 0.00 0.00 0.00 5.54
310 311 8.463607 ACTTCTCTAGTATTTTCTTTCTCTCGG 58.536 37.037 0.00 0.00 34.56 4.63
311 312 9.849166 AACTTCTCTAGTATTTTCTTTCTCTCG 57.151 33.333 0.00 0.00 35.54 4.04
345 346 9.236006 TCGGGATAGTAAGTAGAATTATGGTAC 57.764 37.037 0.00 0.00 0.00 3.34
346 347 9.812347 TTCGGGATAGTAAGTAGAATTATGGTA 57.188 33.333 0.00 0.00 0.00 3.25
347 348 8.716674 TTCGGGATAGTAAGTAGAATTATGGT 57.283 34.615 0.00 0.00 0.00 3.55
348 349 9.991906 TTTTCGGGATAGTAAGTAGAATTATGG 57.008 33.333 0.00 0.00 0.00 2.74
352 353 9.729281 TTGTTTTTCGGGATAGTAAGTAGAATT 57.271 29.630 0.00 0.00 0.00 2.17
353 354 9.159364 GTTGTTTTTCGGGATAGTAAGTAGAAT 57.841 33.333 0.00 0.00 0.00 2.40
354 355 8.370182 AGTTGTTTTTCGGGATAGTAAGTAGAA 58.630 33.333 0.00 0.00 0.00 2.10
355 356 7.816031 CAGTTGTTTTTCGGGATAGTAAGTAGA 59.184 37.037 0.00 0.00 0.00 2.59
356 357 7.816031 TCAGTTGTTTTTCGGGATAGTAAGTAG 59.184 37.037 0.00 0.00 0.00 2.57
357 358 7.669427 TCAGTTGTTTTTCGGGATAGTAAGTA 58.331 34.615 0.00 0.00 0.00 2.24
358 359 6.527423 TCAGTTGTTTTTCGGGATAGTAAGT 58.473 36.000 0.00 0.00 0.00 2.24
359 360 7.429636 TTCAGTTGTTTTTCGGGATAGTAAG 57.570 36.000 0.00 0.00 0.00 2.34
360 361 7.989416 ATTCAGTTGTTTTTCGGGATAGTAA 57.011 32.000 0.00 0.00 0.00 2.24
361 362 7.550196 GGTATTCAGTTGTTTTTCGGGATAGTA 59.450 37.037 0.00 0.00 0.00 1.82
362 363 6.373495 GGTATTCAGTTGTTTTTCGGGATAGT 59.627 38.462 0.00 0.00 0.00 2.12
363 364 6.598064 AGGTATTCAGTTGTTTTTCGGGATAG 59.402 38.462 0.00 0.00 0.00 2.08
364 365 6.373216 CAGGTATTCAGTTGTTTTTCGGGATA 59.627 38.462 0.00 0.00 0.00 2.59
365 366 5.183140 CAGGTATTCAGTTGTTTTTCGGGAT 59.817 40.000 0.00 0.00 0.00 3.85
366 367 4.517453 CAGGTATTCAGTTGTTTTTCGGGA 59.483 41.667 0.00 0.00 0.00 5.14
367 368 4.794169 CAGGTATTCAGTTGTTTTTCGGG 58.206 43.478 0.00 0.00 0.00 5.14
368 369 4.226761 GCAGGTATTCAGTTGTTTTTCGG 58.773 43.478 0.00 0.00 0.00 4.30
369 370 4.226761 GGCAGGTATTCAGTTGTTTTTCG 58.773 43.478 0.00 0.00 0.00 3.46
370 371 5.195001 TGGCAGGTATTCAGTTGTTTTTC 57.805 39.130 0.00 0.00 0.00 2.29
371 372 5.806654 ATGGCAGGTATTCAGTTGTTTTT 57.193 34.783 0.00 0.00 0.00 1.94
372 373 6.909550 TTATGGCAGGTATTCAGTTGTTTT 57.090 33.333 0.00 0.00 0.00 2.43
373 374 7.834181 AGTATTATGGCAGGTATTCAGTTGTTT 59.166 33.333 0.00 0.00 0.00 2.83
374 375 7.346471 AGTATTATGGCAGGTATTCAGTTGTT 58.654 34.615 0.00 0.00 0.00 2.83
375 376 6.900194 AGTATTATGGCAGGTATTCAGTTGT 58.100 36.000 0.00 0.00 0.00 3.32
376 377 6.146184 CGAGTATTATGGCAGGTATTCAGTTG 59.854 42.308 0.00 0.00 0.00 3.16
377 378 6.223852 CGAGTATTATGGCAGGTATTCAGTT 58.776 40.000 0.00 0.00 0.00 3.16
378 379 5.784177 CGAGTATTATGGCAGGTATTCAGT 58.216 41.667 0.00 0.00 0.00 3.41
379 380 4.627467 GCGAGTATTATGGCAGGTATTCAG 59.373 45.833 0.00 0.00 0.00 3.02
380 381 4.566004 GCGAGTATTATGGCAGGTATTCA 58.434 43.478 0.00 0.00 0.00 2.57
381 382 3.612860 CGCGAGTATTATGGCAGGTATTC 59.387 47.826 0.00 0.00 0.00 1.75
382 383 3.585862 CGCGAGTATTATGGCAGGTATT 58.414 45.455 0.00 0.00 0.00 1.89
383 384 2.094182 CCGCGAGTATTATGGCAGGTAT 60.094 50.000 8.23 0.00 0.00 2.73
384 385 1.271379 CCGCGAGTATTATGGCAGGTA 59.729 52.381 8.23 0.00 0.00 3.08
385 386 0.033504 CCGCGAGTATTATGGCAGGT 59.966 55.000 8.23 0.00 0.00 4.00
386 387 1.291877 GCCGCGAGTATTATGGCAGG 61.292 60.000 8.23 0.00 45.06 4.85
387 388 1.617755 CGCCGCGAGTATTATGGCAG 61.618 60.000 8.23 0.00 46.02 4.85
388 389 1.663388 CGCCGCGAGTATTATGGCA 60.663 57.895 8.23 0.00 46.02 4.92
389 390 1.615107 GACGCCGCGAGTATTATGGC 61.615 60.000 21.79 0.00 42.29 4.40
390 391 0.039437 AGACGCCGCGAGTATTATGG 60.039 55.000 21.79 0.00 0.00 2.74
391 392 1.053048 CAGACGCCGCGAGTATTATG 58.947 55.000 21.79 0.00 0.00 1.90
392 393 0.666913 ACAGACGCCGCGAGTATTAT 59.333 50.000 21.79 0.00 0.00 1.28
393 394 0.452987 AACAGACGCCGCGAGTATTA 59.547 50.000 21.79 0.00 0.00 0.98
394 395 1.076533 CAACAGACGCCGCGAGTATT 61.077 55.000 21.79 5.55 0.00 1.89
395 396 1.516386 CAACAGACGCCGCGAGTAT 60.516 57.895 21.79 0.95 0.00 2.12
396 397 1.929806 ATCAACAGACGCCGCGAGTA 61.930 55.000 21.79 1.56 0.00 2.59
397 398 2.765250 AATCAACAGACGCCGCGAGT 62.765 55.000 21.79 11.86 0.00 4.18
398 399 1.626654 AAATCAACAGACGCCGCGAG 61.627 55.000 21.79 11.19 0.00 5.03
399 400 1.666553 AAATCAACAGACGCCGCGA 60.667 52.632 21.79 0.00 0.00 5.87
400 401 1.509787 CAAATCAACAGACGCCGCG 60.510 57.895 12.14 12.14 0.00 6.46
401 402 1.797537 GCAAATCAACAGACGCCGC 60.798 57.895 0.00 0.00 0.00 6.53
402 403 1.154225 GGCAAATCAACAGACGCCG 60.154 57.895 0.00 0.00 0.00 6.46
403 404 1.154225 CGGCAAATCAACAGACGCC 60.154 57.895 0.00 0.00 36.16 5.68
404 405 0.725784 CACGGCAAATCAACAGACGC 60.726 55.000 0.00 0.00 0.00 5.19
405 406 0.865111 TCACGGCAAATCAACAGACG 59.135 50.000 0.00 0.00 0.00 4.18
406 407 1.400242 GCTCACGGCAAATCAACAGAC 60.400 52.381 0.00 0.00 41.35 3.51
407 408 0.874390 GCTCACGGCAAATCAACAGA 59.126 50.000 0.00 0.00 41.35 3.41
408 409 0.109597 GGCTCACGGCAAATCAACAG 60.110 55.000 0.00 0.00 44.01 3.16
409 410 1.523154 GGGCTCACGGCAAATCAACA 61.523 55.000 0.00 0.00 44.01 3.33
410 411 1.212751 GGGCTCACGGCAAATCAAC 59.787 57.895 0.00 0.00 44.01 3.18
411 412 0.326595 TAGGGCTCACGGCAAATCAA 59.673 50.000 0.00 0.00 44.01 2.57
412 413 0.392461 GTAGGGCTCACGGCAAATCA 60.392 55.000 0.00 0.00 44.01 2.57
413 414 1.429148 CGTAGGGCTCACGGCAAATC 61.429 60.000 1.22 0.00 44.01 2.17
414 415 1.449601 CGTAGGGCTCACGGCAAAT 60.450 57.895 1.22 0.00 44.01 2.32
415 416 2.047655 CGTAGGGCTCACGGCAAA 60.048 61.111 1.22 0.00 44.01 3.68
416 417 4.752879 GCGTAGGGCTCACGGCAA 62.753 66.667 9.95 0.00 44.01 4.52
436 437 3.368190 CTCTGGAGAGCACGGGCAG 62.368 68.421 14.57 0.00 44.61 4.85
445 446 0.038159 ACCGCGTTTTCTCTGGAGAG 60.038 55.000 4.92 0.00 43.36 3.20
446 447 1.068055 GTACCGCGTTTTCTCTGGAGA 60.068 52.381 4.92 0.00 35.27 3.71
447 448 1.347320 GTACCGCGTTTTCTCTGGAG 58.653 55.000 4.92 0.00 0.00 3.86
468 469 1.291906 CGTTGGGGAAATTGGCACC 59.708 57.895 0.00 0.00 0.00 5.01
473 474 4.141287 TGATATAGCCGTTGGGGAAATTG 58.859 43.478 0.00 0.00 38.47 2.32
474 475 4.447138 TGATATAGCCGTTGGGGAAATT 57.553 40.909 0.00 0.00 38.47 1.82
475 476 4.657814 ATGATATAGCCGTTGGGGAAAT 57.342 40.909 0.00 0.00 38.47 2.17
476 477 4.447138 AATGATATAGCCGTTGGGGAAA 57.553 40.909 0.00 0.00 38.47 3.13
477 478 4.447138 AAATGATATAGCCGTTGGGGAA 57.553 40.909 0.00 0.00 38.47 3.97
478 479 4.348461 TGTAAATGATATAGCCGTTGGGGA 59.652 41.667 0.00 0.00 38.47 4.81
531 533 1.609580 GGTGGAAATAGTGGTGCGTCA 60.610 52.381 0.00 0.00 0.00 4.35
532 534 1.084289 GGTGGAAATAGTGGTGCGTC 58.916 55.000 0.00 0.00 0.00 5.19
533 535 0.322187 GGGTGGAAATAGTGGTGCGT 60.322 55.000 0.00 0.00 0.00 5.24
592 595 1.371558 GGCGGAGTTGGTTCTCTGT 59.628 57.895 0.00 0.00 41.39 3.41
595 598 3.119096 GCGGCGGAGTTGGTTCTC 61.119 66.667 9.78 0.00 0.00 2.87
696 739 3.063197 GCGAGGAGGAGGAGGAGGA 62.063 68.421 0.00 0.00 0.00 3.71
697 740 2.520741 GCGAGGAGGAGGAGGAGG 60.521 72.222 0.00 0.00 0.00 4.30
698 741 2.904866 CGCGAGGAGGAGGAGGAG 60.905 72.222 0.00 0.00 0.00 3.69
733 783 3.186909 CGAGATCGCAATCAGTAACCAA 58.813 45.455 0.00 0.00 34.07 3.67
734 784 2.165641 ACGAGATCGCAATCAGTAACCA 59.834 45.455 1.39 0.00 44.43 3.67
796 846 6.430000 CGGAGAGGATTTCTACCAAAAGAAAA 59.570 38.462 3.40 0.00 45.83 2.29
829 882 4.517453 CCAAATCAACTCGGTAAAGGACAA 59.483 41.667 0.00 0.00 0.00 3.18
830 883 4.069304 CCAAATCAACTCGGTAAAGGACA 58.931 43.478 0.00 0.00 0.00 4.02
883 951 1.139058 ACCCTAAATCGAGCGAGCAAT 59.861 47.619 0.00 0.00 0.00 3.56
886 954 2.125685 GTAACCCTAAATCGAGCGAGC 58.874 52.381 0.00 0.00 0.00 5.03
887 955 3.712091 AGTAACCCTAAATCGAGCGAG 57.288 47.619 0.00 0.00 0.00 5.03
888 956 4.427312 GAAAGTAACCCTAAATCGAGCGA 58.573 43.478 0.00 0.00 0.00 4.93
889 957 3.242248 CGAAAGTAACCCTAAATCGAGCG 59.758 47.826 0.00 0.00 0.00 5.03
918 986 0.469917 AGTGCAATTCGATCCGGGAT 59.530 50.000 9.85 9.85 0.00 3.85
919 987 0.461870 CAGTGCAATTCGATCCGGGA 60.462 55.000 0.00 0.00 0.00 5.14
925 993 1.736126 CACAGAGCAGTGCAATTCGAT 59.264 47.619 19.20 0.00 32.04 3.59
936 1004 3.677284 ATCAGGGCGCACAGAGCAG 62.677 63.158 14.57 0.00 46.13 4.24
941 1009 2.758089 GCAAGATCAGGGCGCACAG 61.758 63.158 14.57 2.99 0.00 3.66
942 1010 2.747460 GCAAGATCAGGGCGCACA 60.747 61.111 14.57 0.00 0.00 4.57
943 1011 3.512516 GGCAAGATCAGGGCGCAC 61.513 66.667 10.83 5.15 0.00 5.34
944 1012 4.802051 GGGCAAGATCAGGGCGCA 62.802 66.667 10.83 0.00 39.89 6.09
947 1015 4.802051 TGCGGGCAAGATCAGGGC 62.802 66.667 0.00 0.00 0.00 5.19
948 1016 1.895707 GATGCGGGCAAGATCAGGG 60.896 63.158 0.00 0.00 0.00 4.45
949 1017 1.153107 TGATGCGGGCAAGATCAGG 60.153 57.895 0.00 0.00 0.00 3.86
950 1018 0.463295 ACTGATGCGGGCAAGATCAG 60.463 55.000 16.93 16.93 43.04 2.90
951 1019 0.829990 TACTGATGCGGGCAAGATCA 59.170 50.000 0.00 0.00 0.00 2.92
952 1020 1.202580 AGTACTGATGCGGGCAAGATC 60.203 52.381 0.00 0.00 0.00 2.75
960 1028 1.299926 GGCGGTAGTACTGATGCGG 60.300 63.158 13.54 0.00 0.00 5.69
1079 1147 2.556459 ATGGAGGGCGTCGAGATCG 61.556 63.158 0.00 0.00 41.45 3.69
1080 1148 1.006805 CATGGAGGGCGTCGAGATC 60.007 63.158 0.00 0.00 0.00 2.75
1081 1149 3.133014 CATGGAGGGCGTCGAGAT 58.867 61.111 0.00 0.00 0.00 2.75
1082 1150 3.838271 GCATGGAGGGCGTCGAGA 61.838 66.667 0.00 0.00 0.00 4.04
1083 1151 4.899239 GGCATGGAGGGCGTCGAG 62.899 72.222 0.00 0.00 0.00 4.04
1211 1279 1.228154 GGACAACAGGCGAAAGGGT 60.228 57.895 0.00 0.00 0.00 4.34
1280 1354 1.547820 TGCCAGACAAACAAACAAGCA 59.452 42.857 0.00 0.00 0.00 3.91
1585 1667 4.997395 CAGTACCACAAACTAAGCATGACT 59.003 41.667 0.00 0.00 0.00 3.41
1587 1669 3.751175 GCAGTACCACAAACTAAGCATGA 59.249 43.478 0.00 0.00 0.00 3.07
1672 1763 1.026718 CGGACTGCATCAGGTTTCCC 61.027 60.000 0.00 0.00 35.51 3.97
1721 1816 5.103000 CAGGTTGAGGTAGTAATCGTCAAG 58.897 45.833 0.00 0.00 39.29 3.02
1841 1936 0.109342 GGGCCATCGTCCTCATCAAT 59.891 55.000 4.39 0.00 0.00 2.57
1933 2028 0.035439 GGTTCGAGCTGGAATCCCAA 60.035 55.000 14.60 0.00 42.98 4.12
1974 2069 7.505585 CAGAGAATTATAACAGGAGAGAGAGGT 59.494 40.741 0.00 0.00 0.00 3.85
2034 2630 2.949644 TCAGCTGCAGAATGATTCATGG 59.050 45.455 20.43 0.00 39.69 3.66
2040 2638 1.558294 TGTCCTCAGCTGCAGAATGAT 59.442 47.619 20.43 0.00 39.69 2.45
2097 2700 2.573009 TCAGGATGCTCTTGTTCCATGA 59.427 45.455 0.00 0.00 34.76 3.07
2690 3300 2.159296 CCATCCATCTGTGCACACAATG 60.159 50.000 17.42 20.59 41.33 2.82
2731 3341 1.676967 CAGGGCTCTGCAAAGGTCC 60.677 63.158 0.00 0.00 33.86 4.46
2769 3577 3.177920 GTCTCGTCTGCTGCAGCG 61.178 66.667 32.11 28.13 45.83 5.18
2909 3723 0.884704 TTCTTGTCAGAGTTGCGGCC 60.885 55.000 0.00 0.00 0.00 6.13
2911 3725 1.871080 ACTTCTTGTCAGAGTTGCGG 58.129 50.000 0.00 0.00 0.00 5.69
2912 3726 2.410053 GCTACTTCTTGTCAGAGTTGCG 59.590 50.000 0.00 0.00 0.00 4.85
2914 3728 4.876125 TCAGCTACTTCTTGTCAGAGTTG 58.124 43.478 0.00 0.00 0.00 3.16
2945 3792 5.754890 ACTTCAATGCACACAAAGAATTTCC 59.245 36.000 0.00 0.00 35.03 3.13
2991 3838 7.205297 TGTAGAACAACAACTAGAGTTACCAC 58.795 38.462 0.00 0.00 36.32 4.16
3093 4155 9.536558 CACATGATTTTAAGACATTGCATTTTG 57.463 29.630 0.00 0.00 0.00 2.44
3094 4156 9.275398 ACACATGATTTTAAGACATTGCATTTT 57.725 25.926 0.00 0.00 0.00 1.82
3095 4157 8.836268 ACACATGATTTTAAGACATTGCATTT 57.164 26.923 0.00 0.00 0.00 2.32
3102 4167 7.870826 TCAAACGACACATGATTTTAAGACAT 58.129 30.769 0.00 0.00 0.00 3.06
3103 4168 7.225734 TCTCAAACGACACATGATTTTAAGACA 59.774 33.333 0.00 0.00 0.00 3.41
3108 4173 8.771920 ATACTCTCAAACGACACATGATTTTA 57.228 30.769 0.00 0.00 0.00 1.52
3145 4210 4.479158 ACAAAGAATAGTTTGGGAGGCAA 58.521 39.130 1.74 0.00 41.03 4.52
3146 4211 4.112634 ACAAAGAATAGTTTGGGAGGCA 57.887 40.909 1.74 0.00 41.03 4.75
3147 4212 4.809673 CAACAAAGAATAGTTTGGGAGGC 58.190 43.478 1.74 0.00 41.03 4.70
3149 4214 5.712152 AGCAACAAAGAATAGTTTGGGAG 57.288 39.130 1.74 0.00 41.03 4.30
3150 4215 6.478512 AAAGCAACAAAGAATAGTTTGGGA 57.521 33.333 1.74 0.00 41.03 4.37
3151 4216 6.760770 TCAAAAGCAACAAAGAATAGTTTGGG 59.239 34.615 1.74 0.00 41.03 4.12
3152 4217 7.769272 TCAAAAGCAACAAAGAATAGTTTGG 57.231 32.000 1.74 0.00 41.03 3.28
3153 4218 8.819974 ACATCAAAAGCAACAAAGAATAGTTTG 58.180 29.630 0.00 0.00 42.21 2.93
3184 4249 1.657181 GCGGCAAAACCAGTCAACG 60.657 57.895 0.00 0.00 39.03 4.10
3202 4269 1.141019 CATACCCGTCCCACGTCAG 59.859 63.158 0.00 0.00 40.58 3.51
3210 4277 1.623542 AAGCACCTCCATACCCGTCC 61.624 60.000 0.00 0.00 0.00 4.79
3214 4281 1.501582 AGAGAAGCACCTCCATACCC 58.498 55.000 2.27 0.00 33.76 3.69
3218 4285 2.108952 ACCAAAAGAGAAGCACCTCCAT 59.891 45.455 2.27 0.00 33.76 3.41
3254 4321 0.755327 AGTGGTGGTGGCTTCAAACC 60.755 55.000 0.00 0.00 36.96 3.27
3256 4323 2.969821 ATAGTGGTGGTGGCTTCAAA 57.030 45.000 0.00 0.00 0.00 2.69
3285 4362 9.062524 CCATGTATGACCCGAAAAGAATAATAA 57.937 33.333 0.00 0.00 0.00 1.40
3286 4363 8.433599 TCCATGTATGACCCGAAAAGAATAATA 58.566 33.333 0.00 0.00 0.00 0.98
3287 4364 7.228706 GTCCATGTATGACCCGAAAAGAATAAT 59.771 37.037 0.00 0.00 0.00 1.28
3296 4376 1.484653 CAGGTCCATGTATGACCCGAA 59.515 52.381 14.03 0.00 39.70 4.30
3331 4413 4.137116 TCAGTGGGAATACATACACAGC 57.863 45.455 0.00 0.00 36.35 4.40
3343 4425 3.561313 GCTAGGTTTGGATTCAGTGGGAA 60.561 47.826 0.00 0.00 40.46 3.97
3358 4440 5.140454 ACTCTGTTCCAATTTTGCTAGGTT 58.860 37.500 0.00 0.00 0.00 3.50
3396 4478 2.674380 CCACTCCAAGCCTGGCAC 60.674 66.667 22.65 0.00 43.17 5.01
3399 4481 1.530013 CTTTGCCACTCCAAGCCTGG 61.530 60.000 0.00 0.00 45.08 4.45
3400 4482 1.962144 CTTTGCCACTCCAAGCCTG 59.038 57.895 0.00 0.00 0.00 4.85
3401 4483 1.905354 GCTTTGCCACTCCAAGCCT 60.905 57.895 0.00 0.00 0.00 4.58
3406 4488 1.005805 ACCATATGCTTTGCCACTCCA 59.994 47.619 0.00 0.00 0.00 3.86
3454 4589 2.485426 CACCACGAGATGCACATTTCTT 59.515 45.455 0.00 0.00 0.00 2.52
3455 4590 2.079158 CACCACGAGATGCACATTTCT 58.921 47.619 0.00 0.00 0.00 2.52
3477 4612 0.478072 ACCATCTGCCACTGAACCAA 59.522 50.000 0.00 0.00 0.00 3.67
3479 4614 0.250901 ACACCATCTGCCACTGAACC 60.251 55.000 0.00 0.00 0.00 3.62
3504 4646 3.006940 GTTGGTTGTAATCTGATCGGCA 58.993 45.455 0.00 0.00 0.00 5.69
3505 4647 2.354821 GGTTGGTTGTAATCTGATCGGC 59.645 50.000 0.00 0.00 0.00 5.54
3516 4658 3.130516 TGCGAATGTTTTGGTTGGTTGTA 59.869 39.130 0.00 0.00 0.00 2.41
3523 4665 5.355596 TCTGATTTTGCGAATGTTTTGGTT 58.644 33.333 0.00 0.00 0.00 3.67
3524 4666 4.942852 TCTGATTTTGCGAATGTTTTGGT 58.057 34.783 0.00 0.00 0.00 3.67
3525 4667 5.634439 TCATCTGATTTTGCGAATGTTTTGG 59.366 36.000 0.00 0.00 0.00 3.28
3526 4668 6.669032 GCTCATCTGATTTTGCGAATGTTTTG 60.669 38.462 0.00 0.00 0.00 2.44
3527 4669 5.346822 GCTCATCTGATTTTGCGAATGTTTT 59.653 36.000 0.00 0.00 0.00 2.43
3556 4702 5.471456 CACTGGTAATCTCATGGGATTAAGC 59.529 44.000 26.08 19.48 39.10 3.09
3582 4731 7.441836 ACTTTTGGTTGGAGAAATGGTAAATC 58.558 34.615 0.00 0.00 0.00 2.17
3605 4758 2.678336 GCCAATCTTTTACTGCGCTACT 59.322 45.455 9.73 0.00 0.00 2.57
3611 4764 2.030007 TGCACTGCCAATCTTTTACTGC 60.030 45.455 0.00 0.00 0.00 4.40
3653 4806 1.154338 CAGCTGCAAACGCACTAGC 60.154 57.895 0.00 0.00 35.03 3.42
3730 4883 2.464459 CGGAAGAGGAACCATGCGC 61.464 63.158 0.00 0.00 0.00 6.09
3731 4884 1.815421 CCGGAAGAGGAACCATGCG 60.815 63.158 0.00 0.00 0.00 4.73
3732 4885 2.115291 GCCGGAAGAGGAACCATGC 61.115 63.158 5.05 0.00 0.00 4.06
3774 4927 3.431725 GGCGAAAGGGCGACTTGG 61.432 66.667 0.00 0.00 39.96 3.61
3775 4928 3.431725 GGGCGAAAGGGCGACTTG 61.432 66.667 0.00 0.00 43.46 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.