Multiple sequence alignment - TraesCS2B01G461300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G461300 chr2B 100.000 6537 0 0 1 6537 655010212 655003676 0.000000e+00 12072.0
1 TraesCS2B01G461300 chr2B 90.604 149 5 4 3249 3396 496462701 496462561 8.650000e-44 189.0
2 TraesCS2B01G461300 chr2B 95.122 41 1 1 5195 5235 655004981 655004942 5.470000e-06 63.9
3 TraesCS2B01G461300 chr2B 95.122 41 1 1 5232 5271 655005018 655004978 5.470000e-06 63.9
4 TraesCS2B01G461300 chr2D 96.913 2235 51 7 3822 6052 548076791 548074571 0.000000e+00 3729.0
5 TraesCS2B01G461300 chr2D 88.583 1708 98 44 598 2288 548079992 548078365 0.000000e+00 1984.0
6 TraesCS2B01G461300 chr2D 97.328 973 25 1 2285 3256 548078273 548077301 0.000000e+00 1652.0
7 TraesCS2B01G461300 chr2D 97.241 435 9 1 3385 3819 548077304 548076873 0.000000e+00 734.0
8 TraesCS2B01G461300 chr2D 90.828 447 32 7 6057 6498 548074406 548073964 2.030000e-164 590.0
9 TraesCS2B01G461300 chr2D 88.221 399 36 3 6141 6537 547862437 547862048 3.570000e-127 466.0
10 TraesCS2B01G461300 chr2D 91.489 282 15 1 1 282 548080660 548080388 4.780000e-101 379.0
11 TraesCS2B01G461300 chr2D 91.034 145 6 3 3254 3398 298294701 298294564 8.650000e-44 189.0
12 TraesCS2B01G461300 chr2D 97.561 41 0 1 5195 5235 548075389 548075350 1.180000e-07 69.4
13 TraesCS2B01G461300 chr2D 95.122 41 1 1 5232 5271 548075426 548075386 5.470000e-06 63.9
14 TraesCS2B01G461300 chr2A 91.819 2567 123 39 613 3160 690930486 690932984 0.000000e+00 3496.0
15 TraesCS2B01G461300 chr2A 92.324 1889 109 15 3385 5271 690933070 690934924 0.000000e+00 2652.0
16 TraesCS2B01G461300 chr2A 94.328 670 28 4 5199 5865 690934888 690935550 0.000000e+00 1018.0
17 TraesCS2B01G461300 chr2A 89.280 625 50 10 5855 6467 690947455 690948074 0.000000e+00 767.0
18 TraesCS2B01G461300 chr2A 86.810 326 33 6 277 598 690930099 690930418 8.060000e-94 355.0
19 TraesCS2B01G461300 chr2A 91.447 152 9 4 134 282 690929849 690929999 8.590000e-49 206.0
20 TraesCS2B01G461300 chr2A 97.561 41 0 1 5195 5235 690934921 690934960 1.180000e-07 69.4
21 TraesCS2B01G461300 chr1B 94.326 141 1 2 3250 3390 623397431 623397564 6.640000e-50 209.0
22 TraesCS2B01G461300 chr1B 91.781 146 5 3 3255 3400 245943377 245943239 5.170000e-46 196.0
23 TraesCS2B01G461300 chr7B 93.706 143 1 3 3253 3395 575370853 575370719 2.390000e-49 207.0
24 TraesCS2B01G461300 chr7B 94.815 135 0 2 3255 3389 126549225 126549098 3.090000e-48 204.0
25 TraesCS2B01G461300 chr7B 91.946 149 2 4 3253 3400 141907234 141907373 4.000000e-47 200.0
26 TraesCS2B01G461300 chr7B 79.545 88 12 3 160 246 703956588 703956506 2.550000e-04 58.4
27 TraesCS2B01G461300 chr6B 91.333 150 4 4 3250 3399 312632357 312632217 5.170000e-46 196.0
28 TraesCS2B01G461300 chr6B 74.755 408 61 21 204 598 103664812 103665190 1.900000e-30 145.0
29 TraesCS2B01G461300 chr4B 91.781 146 5 3 3255 3400 245592768 245592630 5.170000e-46 196.0
30 TraesCS2B01G461300 chr6A 76.812 414 53 20 204 598 53504373 53503984 6.690000e-45 193.0
31 TraesCS2B01G461300 chr4A 94.737 38 2 0 4006 4043 596536834 596536871 7.080000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G461300 chr2B 655003676 655010212 6536 True 12072.0000 12072 100.000000 1 6537 1 chr2B.!!$R2 6536
1 TraesCS2B01G461300 chr2D 548073964 548080660 6696 True 1150.1625 3729 94.383125 1 6498 8 chr2D.!!$R3 6497
2 TraesCS2B01G461300 chr2A 690929849 690935550 5701 False 1299.4000 3496 92.381500 134 5865 6 chr2A.!!$F2 5731
3 TraesCS2B01G461300 chr2A 690947455 690948074 619 False 767.0000 767 89.280000 5855 6467 1 chr2A.!!$F1 612

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
679 951 0.036732 AATGTGCATCTCGTGGTGGT 59.963 50.0 0.00 0.0 0.00 4.16 F
1590 1901 0.178876 TGGTGGAGGTTGGAGGATGA 60.179 55.0 0.00 0.0 0.00 2.92 F
1591 1902 0.253327 GGTGGAGGTTGGAGGATGAC 59.747 60.0 0.00 0.0 0.00 3.06 F
2124 2436 0.393448 GCTATCCGACCTCCCTTTCC 59.607 60.0 0.00 0.0 0.00 3.13 F
3273 3684 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.0 5.23 0.0 44.66 2.17 F
3276 3687 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.0 5.23 0.0 44.66 2.12 F
3622 4034 0.315251 CACACAGCTCCTCGAAGTCA 59.685 55.0 0.00 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1811 2123 1.067142 TGTGAGGAGTGCATTCGGTAC 60.067 52.381 2.84 2.79 0.00 3.34 R
3254 3665 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59 R
3257 3668 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20 R
3371 3782 0.549950 AGATACTCCCTCCGTCCGAA 59.450 55.000 0.00 0.00 0.00 4.30 R
4848 5340 0.102120 TTGCAACGAAGGCACCAAAG 59.898 50.000 0.00 0.00 41.75 2.77 R
5263 5783 1.139853 CCAGACATTCCTAGGCCAGAC 59.860 57.143 5.01 0.00 0.00 3.51 R
5569 6089 0.968901 CATGATGTGGCACAAGGGCT 60.969 55.000 25.95 7.51 44.16 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 0.390866 ATGCTCCGAAGTCTGCAGTG 60.391 55.000 14.67 0.00 38.87 3.66
44 45 4.626042 GAAGTCTGCAGTGAAAGAGAAGA 58.374 43.478 14.67 0.00 0.00 2.87
47 48 4.100808 AGTCTGCAGTGAAAGAGAAGACTT 59.899 41.667 14.67 0.00 39.81 3.01
49 50 4.100035 TCTGCAGTGAAAGAGAAGACTTCA 59.900 41.667 17.34 0.00 0.00 3.02
70 71 3.562973 CACAGAGCAGATTGTTCAACAGT 59.437 43.478 0.00 0.00 29.40 3.55
147 148 8.087982 TGACAAGAAGTAGCTGATTTTACTTG 57.912 34.615 2.08 0.00 39.52 3.16
163 164 7.532682 TTTTACTTGGAAATTCTTTGTGTGC 57.467 32.000 0.00 0.00 0.00 4.57
193 194 6.650120 AGTATTTGTGGGTACTTCAGTATGG 58.350 40.000 0.00 0.00 36.16 2.74
325 537 6.086222 GCAATGTCTTAAAATCATGTGTCGT 58.914 36.000 0.00 0.00 0.00 4.34
336 548 7.672983 AAATCATGTGTCGTTTGAGAGTATT 57.327 32.000 0.00 0.00 0.00 1.89
337 549 6.893958 ATCATGTGTCGTTTGAGAGTATTC 57.106 37.500 0.00 0.00 0.00 1.75
339 551 4.492791 TGTGTCGTTTGAGAGTATTCGA 57.507 40.909 0.00 0.00 0.00 3.71
341 553 4.678287 TGTGTCGTTTGAGAGTATTCGAAC 59.322 41.667 0.00 0.00 37.86 3.95
347 559 5.175126 CGTTTGAGAGTATTCGAACTGTTGT 59.825 40.000 0.00 0.00 38.68 3.32
348 560 6.292168 CGTTTGAGAGTATTCGAACTGTTGTT 60.292 38.462 0.00 0.00 38.68 2.83
349 561 6.525121 TTGAGAGTATTCGAACTGTTGTTG 57.475 37.500 0.00 0.00 36.39 3.33
351 563 3.746492 AGAGTATTCGAACTGTTGTTGCC 59.254 43.478 0.00 0.00 36.39 4.52
352 564 3.740115 AGTATTCGAACTGTTGTTGCCT 58.260 40.909 0.00 0.00 36.39 4.75
353 565 3.746492 AGTATTCGAACTGTTGTTGCCTC 59.254 43.478 0.00 0.00 36.39 4.70
354 566 1.305201 TTCGAACTGTTGTTGCCTCC 58.695 50.000 0.00 0.00 36.39 4.30
355 567 0.534203 TCGAACTGTTGTTGCCTCCC 60.534 55.000 0.00 0.00 36.39 4.30
386 598 5.115480 TCTTTGTTGCTTTTGATGTTTCCC 58.885 37.500 0.00 0.00 0.00 3.97
402 614 1.104577 TCCCGTTGACTGGTTTTGCC 61.105 55.000 0.00 0.00 37.90 4.52
404 616 1.657181 CGTTGACTGGTTTTGCCGC 60.657 57.895 0.00 0.00 41.21 6.53
412 624 2.051345 GTTTTGCCGCTGACGTGG 60.051 61.111 0.00 0.00 43.83 4.94
414 626 3.758973 TTTTGCCGCTGACGTGGGA 62.759 57.895 0.00 0.00 41.23 4.37
456 668 3.296322 TTTGGTTGCCTTCTTTATGCG 57.704 42.857 0.00 0.00 0.00 4.73
458 670 1.173913 GGTTGCCTTCTTTATGCGGT 58.826 50.000 0.00 0.00 0.00 5.68
482 699 4.076394 TGAAGCCACCACCACTATTTTAC 58.924 43.478 0.00 0.00 0.00 2.01
483 700 3.081710 AGCCACCACCACTATTTTACC 57.918 47.619 0.00 0.00 0.00 2.85
484 701 2.377193 AGCCACCACCACTATTTTACCA 59.623 45.455 0.00 0.00 0.00 3.25
540 759 2.857186 TCTGCAATGGAAGCTGTGTA 57.143 45.000 0.00 0.00 33.36 2.90
545 764 4.525996 TGCAATGGAAGCTGTGTATGTAT 58.474 39.130 0.00 0.00 0.00 2.29
560 779 6.119536 GTGTATGTATTCCCACTGAATCCAA 58.880 40.000 0.00 0.00 42.75 3.53
581 800 5.221422 CCAAACCTAGCAAAATTGGAACAGA 60.221 40.000 0.00 0.00 42.46 3.41
608 827 0.825010 CTTCAGGTTGTGCCAGGCTT 60.825 55.000 14.15 0.00 40.61 4.35
620 892 1.962144 CAGGCTTGGAGTGGCAAAG 59.038 57.895 0.00 0.00 0.00 2.77
656 928 3.766591 TCTTGGGCTTGTTTCAGTCAAAA 59.233 39.130 0.00 0.00 0.00 2.44
657 929 4.221703 TCTTGGGCTTGTTTCAGTCAAAAA 59.778 37.500 0.00 0.00 0.00 1.94
679 951 0.036732 AATGTGCATCTCGTGGTGGT 59.963 50.000 0.00 0.00 0.00 4.16
681 953 0.884259 TGTGCATCTCGTGGTGGTTG 60.884 55.000 0.00 0.00 0.00 3.77
706 985 1.032014 GTGGCAGATGGTGTTTGTGT 58.968 50.000 0.00 0.00 0.00 3.72
707 986 1.031235 TGGCAGATGGTGTTTGTGTG 58.969 50.000 0.00 0.00 0.00 3.82
718 997 2.226437 GTGTTTGTGTGCCGATCAGATT 59.774 45.455 0.00 0.00 0.00 2.40
725 1004 2.027653 TGTGCCGATCAGATTACAACCA 60.028 45.455 0.00 0.00 0.00 3.67
726 1005 3.006940 GTGCCGATCAGATTACAACCAA 58.993 45.455 0.00 0.00 0.00 3.67
727 1006 3.006940 TGCCGATCAGATTACAACCAAC 58.993 45.455 0.00 0.00 0.00 3.77
728 1007 2.354821 GCCGATCAGATTACAACCAACC 59.645 50.000 0.00 0.00 0.00 3.77
729 1008 3.605634 CCGATCAGATTACAACCAACCA 58.394 45.455 0.00 0.00 0.00 3.67
750 1033 5.406175 ACCAAAACATTCGCAAAATCAGATG 59.594 36.000 0.00 0.00 0.00 2.90
758 1041 1.533338 GCAAAATCAGATGAGCAGCGG 60.533 52.381 0.00 0.00 0.00 5.52
784 1070 4.970860 ATCCCATGAGATTACCAGTGAG 57.029 45.455 0.00 0.00 0.00 3.51
807 1097 7.288852 TGAGATTTACCATTTCTCCAACCAAAA 59.711 33.333 0.00 0.00 35.99 2.44
813 1103 4.475944 CATTTCTCCAACCAAAAGTAGCG 58.524 43.478 0.00 0.00 0.00 4.26
927 1217 2.556840 ATCCTGGCCGTCCAATGGTG 62.557 60.000 0.00 0.00 42.91 4.17
932 1222 3.430862 CCGTCCAATGGTGGCACG 61.431 66.667 12.17 1.33 45.54 5.34
933 1223 4.101790 CGTCCAATGGTGGCACGC 62.102 66.667 12.17 5.35 45.54 5.34
934 1224 4.101790 GTCCAATGGTGGCACGCG 62.102 66.667 12.17 3.53 45.54 6.01
950 1240 2.464459 GCGCATGGTTCCTCTTCCG 61.464 63.158 0.30 0.00 0.00 4.30
976 1266 4.344865 ACCGGCCATCACCACCAC 62.345 66.667 0.00 0.00 0.00 4.16
978 1268 4.343323 CGGCCATCACCACCACCA 62.343 66.667 2.24 0.00 0.00 4.17
979 1269 2.117206 GGCCATCACCACCACCAA 59.883 61.111 0.00 0.00 0.00 3.67
981 1271 1.228552 GCCATCACCACCACCAAGT 60.229 57.895 0.00 0.00 0.00 3.16
982 1272 1.244019 GCCATCACCACCACCAAGTC 61.244 60.000 0.00 0.00 0.00 3.01
983 1273 0.955428 CCATCACCACCACCAAGTCG 60.955 60.000 0.00 0.00 0.00 4.18
984 1274 1.302511 ATCACCACCACCAAGTCGC 60.303 57.895 0.00 0.00 0.00 5.19
1153 1462 2.219875 ACCCAGACACAGCCTCCTG 61.220 63.158 0.00 0.00 44.80 3.86
1220 1529 0.533032 GATCCCCCGCTGTATAGAGC 59.467 60.000 11.78 11.78 35.46 4.09
1313 1622 0.739813 AAGTTTTCTCGATCGGGCCG 60.740 55.000 22.51 22.51 0.00 6.13
1350 1659 1.273048 TCGCTAGCCGTTTTACAAGGA 59.727 47.619 9.66 0.00 38.35 3.36
1353 1662 3.267483 GCTAGCCGTTTTACAAGGATGA 58.733 45.455 2.29 0.00 0.00 2.92
1354 1663 3.063588 GCTAGCCGTTTTACAAGGATGAC 59.936 47.826 2.29 0.00 0.00 3.06
1355 1664 3.418684 AGCCGTTTTACAAGGATGACT 57.581 42.857 0.00 0.00 0.00 3.41
1356 1665 4.546829 AGCCGTTTTACAAGGATGACTA 57.453 40.909 0.00 0.00 0.00 2.59
1361 1670 2.572191 TTACAAGGATGACTACGGCG 57.428 50.000 4.80 4.80 0.00 6.46
1382 1691 3.244976 GTTTGCTGAATTTGATCCGTGG 58.755 45.455 0.00 0.00 0.00 4.94
1394 1705 1.697910 TCCGTGGGGAGTGAGATCT 59.302 57.895 0.00 0.00 37.43 2.75
1400 1711 3.037549 GTGGGGAGTGAGATCTTGATCT 58.962 50.000 12.39 12.39 0.00 2.75
1405 1716 4.874966 GGGAGTGAGATCTTGATCTGTTTG 59.125 45.833 16.77 0.00 0.00 2.93
1510 1821 1.540797 GCCCAGATCTTAGCTCTGCTG 60.541 57.143 7.50 2.81 40.10 4.41
1537 1848 2.052782 AAGTTGTTTCCTCTTGCCGT 57.947 45.000 0.00 0.00 0.00 5.68
1540 1851 3.547746 AGTTGTTTCCTCTTGCCGTTAA 58.452 40.909 0.00 0.00 0.00 2.01
1557 1868 5.751680 CCGTTAATGGAGCTGTGAATTATG 58.248 41.667 8.10 0.00 0.00 1.90
1561 1872 4.524802 ATGGAGCTGTGAATTATGGGAA 57.475 40.909 0.00 0.00 0.00 3.97
1563 1874 4.209538 TGGAGCTGTGAATTATGGGAATG 58.790 43.478 0.00 0.00 0.00 2.67
1579 1890 2.094675 GAATGGTTCATGTGGTGGAGG 58.905 52.381 0.00 0.00 0.00 4.30
1580 1891 1.075601 ATGGTTCATGTGGTGGAGGT 58.924 50.000 0.00 0.00 0.00 3.85
1590 1901 0.178876 TGGTGGAGGTTGGAGGATGA 60.179 55.000 0.00 0.00 0.00 2.92
1591 1902 0.253327 GGTGGAGGTTGGAGGATGAC 59.747 60.000 0.00 0.00 0.00 3.06
1603 1914 6.462909 GGTTGGAGGATGACACTTGAATTTTT 60.463 38.462 0.00 0.00 0.00 1.94
1606 1917 5.478332 GGAGGATGACACTTGAATTTTTCCT 59.522 40.000 0.00 0.00 33.88 3.36
1607 1918 6.659242 GGAGGATGACACTTGAATTTTTCCTA 59.341 38.462 0.00 0.00 31.42 2.94
1608 1919 7.148171 GGAGGATGACACTTGAATTTTTCCTAG 60.148 40.741 0.00 0.00 31.42 3.02
1609 1920 7.234355 AGGATGACACTTGAATTTTTCCTAGT 58.766 34.615 0.00 0.00 29.52 2.57
1610 1921 8.383175 AGGATGACACTTGAATTTTTCCTAGTA 58.617 33.333 0.00 0.00 29.52 1.82
1611 1922 8.669243 GGATGACACTTGAATTTTTCCTAGTAG 58.331 37.037 0.00 0.00 0.00 2.57
1612 1923 9.220767 GATGACACTTGAATTTTTCCTAGTAGT 57.779 33.333 0.00 0.00 0.00 2.73
1613 1924 8.378172 TGACACTTGAATTTTTCCTAGTAGTG 57.622 34.615 0.00 0.00 37.19 2.74
1614 1925 7.990886 TGACACTTGAATTTTTCCTAGTAGTGT 59.009 33.333 0.00 0.00 44.35 3.55
1615 1926 8.154649 ACACTTGAATTTTTCCTAGTAGTGTG 57.845 34.615 0.00 0.00 41.30 3.82
1616 1927 7.228706 ACACTTGAATTTTTCCTAGTAGTGTGG 59.771 37.037 0.00 0.00 41.30 4.17
1617 1928 7.228706 CACTTGAATTTTTCCTAGTAGTGTGGT 59.771 37.037 0.00 0.00 0.00 4.16
1618 1929 7.778382 ACTTGAATTTTTCCTAGTAGTGTGGTT 59.222 33.333 0.00 0.00 0.00 3.67
1619 1930 8.528044 TTGAATTTTTCCTAGTAGTGTGGTTT 57.472 30.769 0.00 0.00 0.00 3.27
1620 1931 9.629878 TTGAATTTTTCCTAGTAGTGTGGTTTA 57.370 29.630 0.00 0.00 0.00 2.01
1621 1932 9.059260 TGAATTTTTCCTAGTAGTGTGGTTTAC 57.941 33.333 0.00 0.00 0.00 2.01
1622 1933 7.662604 ATTTTTCCTAGTAGTGTGGTTTACG 57.337 36.000 0.00 0.00 0.00 3.18
1631 1942 3.071479 AGTGTGGTTTACGTATGCTTGG 58.929 45.455 0.00 0.00 0.00 3.61
1636 1947 3.499157 TGGTTTACGTATGCTTGGTTGTC 59.501 43.478 0.00 0.00 0.00 3.18
1652 1963 4.345547 TGGTTGTCATACCACTGTTGTCTA 59.654 41.667 0.00 0.00 43.14 2.59
1654 1965 5.938125 GGTTGTCATACCACTGTTGTCTATT 59.062 40.000 0.00 0.00 38.12 1.73
1656 1967 5.407502 TGTCATACCACTGTTGTCTATTCG 58.592 41.667 0.00 0.00 0.00 3.34
1657 1968 5.047590 TGTCATACCACTGTTGTCTATTCGT 60.048 40.000 0.00 0.00 0.00 3.85
1658 1969 5.288712 GTCATACCACTGTTGTCTATTCGTG 59.711 44.000 0.00 0.00 0.00 4.35
1660 1971 4.859304 ACCACTGTTGTCTATTCGTGTA 57.141 40.909 0.00 0.00 0.00 2.90
1661 1972 4.553323 ACCACTGTTGTCTATTCGTGTAC 58.447 43.478 0.00 0.00 0.00 2.90
1662 1973 4.038282 ACCACTGTTGTCTATTCGTGTACA 59.962 41.667 0.00 0.00 0.00 2.90
1663 1974 4.384846 CCACTGTTGTCTATTCGTGTACAC 59.615 45.833 16.32 16.32 0.00 2.90
1664 1975 5.220381 CACTGTTGTCTATTCGTGTACACT 58.780 41.667 23.01 7.90 0.00 3.55
1665 1976 5.690409 CACTGTTGTCTATTCGTGTACACTT 59.310 40.000 23.01 10.67 0.00 3.16
1670 1981 5.458015 TGTCTATTCGTGTACACTTCACAG 58.542 41.667 23.01 13.13 35.79 3.66
1671 1982 4.323868 GTCTATTCGTGTACACTTCACAGC 59.676 45.833 23.01 5.91 35.79 4.40
1697 2008 8.461222 CAGTGCTGTAAGGAAATTGATAAATGA 58.539 33.333 0.00 0.00 34.45 2.57
1768 2080 2.642139 AATTCTGCGCTGATGGTTTG 57.358 45.000 18.14 0.00 0.00 2.93
1783 2095 9.196552 GCTGATGGTTTGGATAAATTATTAAGC 57.803 33.333 0.00 0.00 0.00 3.09
1802 2114 5.707066 AAGCCCTGAATCAGAGATAAGTT 57.293 39.130 12.53 0.00 32.44 2.66
1886 2198 6.650807 TGGATTCCTCGATGATTACATTTAGC 59.349 38.462 3.95 0.00 36.82 3.09
1897 2209 6.806751 TGATTACATTTAGCGCTAGAAGTCT 58.193 36.000 17.70 8.23 0.00 3.24
1910 2222 5.339990 GCTAGAAGTCTGATGAGAAGTGAC 58.660 45.833 0.00 0.00 0.00 3.67
1999 2311 9.528018 CTAAAAGTTTTGCTTTCAAATCAGGTA 57.472 29.630 11.18 0.00 45.91 3.08
2112 2424 3.249799 TCTTGTTTGTGTTGTGCTATCCG 59.750 43.478 0.00 0.00 0.00 4.18
2123 2435 1.120530 TGCTATCCGACCTCCCTTTC 58.879 55.000 0.00 0.00 0.00 2.62
2124 2436 0.393448 GCTATCCGACCTCCCTTTCC 59.607 60.000 0.00 0.00 0.00 3.13
2431 2838 7.598278 TCACTAATTAAAATTTGTGGATGCGT 58.402 30.769 21.51 0.00 45.62 5.24
2768 3175 2.693074 ACAAGTGGGTTCTGCGAAATTT 59.307 40.909 0.00 0.00 0.00 1.82
2840 3249 8.863049 CAGTCTTAAACCGTAACGTATATTTGT 58.137 33.333 0.00 0.00 0.00 2.83
2873 3282 4.224370 AGGTACGTTGGGTTATCATCAACT 59.776 41.667 0.00 0.00 38.74 3.16
2882 3291 5.372363 TGGGTTATCATCAACTGGGTCATAT 59.628 40.000 0.00 0.00 0.00 1.78
3056 3465 4.080129 TCTGGCAGCAAGATAAGAAAGGAT 60.080 41.667 10.34 0.00 0.00 3.24
3082 3491 7.819415 TGCGGATCATGATAGAAGGTATTTTAG 59.181 37.037 8.54 0.00 0.00 1.85
3128 3539 8.331730 ACGTTAAATAACTATGCTGGTTTTCT 57.668 30.769 2.18 0.00 34.12 2.52
3161 3572 7.817962 ACAGCCAGTAGTATTTTACTAACAGTG 59.182 37.037 0.00 0.00 42.45 3.66
3254 3665 3.382546 GGCTGCATGATTGGTGAATTAGT 59.617 43.478 0.50 0.00 0.00 2.24
3255 3666 4.580167 GGCTGCATGATTGGTGAATTAGTA 59.420 41.667 0.50 0.00 0.00 1.82
3257 3668 5.297776 GCTGCATGATTGGTGAATTAGTACT 59.702 40.000 0.00 0.00 0.00 2.73
3259 3670 5.822519 TGCATGATTGGTGAATTAGTACTCC 59.177 40.000 0.00 0.00 0.00 3.85
3260 3671 5.239525 GCATGATTGGTGAATTAGTACTCCC 59.760 44.000 0.00 0.00 0.00 4.30
3261 3672 6.595682 CATGATTGGTGAATTAGTACTCCCT 58.404 40.000 0.00 0.00 0.00 4.20
3262 3673 6.235231 TGATTGGTGAATTAGTACTCCCTC 57.765 41.667 0.00 0.00 0.00 4.30
3264 3675 3.028850 TGGTGAATTAGTACTCCCTCCG 58.971 50.000 0.00 0.00 0.00 4.63
3265 3676 3.029570 GGTGAATTAGTACTCCCTCCGT 58.970 50.000 0.00 0.00 0.00 4.69
3266 3677 3.067883 GGTGAATTAGTACTCCCTCCGTC 59.932 52.174 0.00 0.00 0.00 4.79
3270 3681 0.982852 TAGTACTCCCTCCGTCCGGA 60.983 60.000 0.00 0.00 42.90 5.14
3272 3683 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
3273 3684 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
3275 3686 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
3276 3687 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
3278 3689 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
3279 3690 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
3280 3691 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
3281 3692 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
3282 3693 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
3283 3694 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
3284 3695 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
3285 3696 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
3286 3697 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
3287 3698 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
3288 3699 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
3289 3700 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
3290 3701 6.657117 TCCGGAAATACTTGTCATCAAAATGA 59.343 34.615 0.00 0.00 39.63 2.57
3291 3702 7.175816 TCCGGAAATACTTGTCATCAAAATGAA 59.824 33.333 0.00 0.00 43.42 2.57
3292 3703 7.975616 CCGGAAATACTTGTCATCAAAATGAAT 59.024 33.333 0.00 0.00 43.42 2.57
3300 3711 8.096414 ACTTGTCATCAAAATGAATAAAAGGGG 58.904 33.333 0.00 0.00 43.42 4.79
3301 3712 7.789202 TGTCATCAAAATGAATAAAAGGGGA 57.211 32.000 0.00 0.00 43.42 4.81
3302 3713 8.378115 TGTCATCAAAATGAATAAAAGGGGAT 57.622 30.769 0.00 0.00 43.42 3.85
3303 3714 8.259411 TGTCATCAAAATGAATAAAAGGGGATG 58.741 33.333 0.00 0.00 43.42 3.51
3304 3715 8.260114 GTCATCAAAATGAATAAAAGGGGATGT 58.740 33.333 0.00 0.00 43.42 3.06
3305 3716 9.486123 TCATCAAAATGAATAAAAGGGGATGTA 57.514 29.630 0.00 0.00 38.97 2.29
3308 3719 9.486123 TCAAAATGAATAAAAGGGGATGTATCA 57.514 29.630 0.00 0.00 0.00 2.15
3311 3722 9.438163 AAATGAATAAAAGGGGATGTATCATGT 57.562 29.630 0.00 0.00 0.00 3.21
3314 3725 9.739276 TGAATAAAAGGGGATGTATCATGTATC 57.261 33.333 0.00 0.00 0.00 2.24
3315 3726 9.965902 GAATAAAAGGGGATGTATCATGTATCT 57.034 33.333 0.00 0.00 0.00 1.98
3318 3729 8.742125 AAAAGGGGATGTATCATGTATCTAGA 57.258 34.615 0.00 0.00 0.00 2.43
3319 3730 8.923838 AAAGGGGATGTATCATGTATCTAGAT 57.076 34.615 10.73 10.73 0.00 1.98
3320 3731 7.911130 AGGGGATGTATCATGTATCTAGATG 57.089 40.000 15.79 0.00 0.00 2.90
3321 3732 7.425834 AGGGGATGTATCATGTATCTAGATGT 58.574 38.462 15.79 0.00 0.00 3.06
3322 3733 8.569596 AGGGGATGTATCATGTATCTAGATGTA 58.430 37.037 15.79 4.44 0.00 2.29
3323 3734 9.373450 GGGGATGTATCATGTATCTAGATGTAT 57.627 37.037 15.79 6.61 0.00 2.29
3342 3753 9.717942 AGATGTATTTTAGTTCTAGATGCATCC 57.282 33.333 23.06 7.42 39.26 3.51
3343 3754 8.854614 ATGTATTTTAGTTCTAGATGCATCCC 57.145 34.615 23.06 6.46 0.00 3.85
3344 3755 8.034313 TGTATTTTAGTTCTAGATGCATCCCT 57.966 34.615 23.06 13.01 0.00 4.20
3345 3756 8.494433 TGTATTTTAGTTCTAGATGCATCCCTT 58.506 33.333 23.06 7.62 0.00 3.95
3346 3757 9.343539 GTATTTTAGTTCTAGATGCATCCCTTT 57.656 33.333 23.06 7.24 0.00 3.11
3347 3758 8.829373 ATTTTAGTTCTAGATGCATCCCTTTT 57.171 30.769 23.06 6.85 0.00 2.27
3348 3759 8.650143 TTTTAGTTCTAGATGCATCCCTTTTT 57.350 30.769 23.06 6.10 0.00 1.94
3349 3760 7.630242 TTAGTTCTAGATGCATCCCTTTTTG 57.370 36.000 23.06 5.60 0.00 2.44
3350 3761 5.574188 AGTTCTAGATGCATCCCTTTTTGT 58.426 37.500 23.06 4.58 0.00 2.83
3351 3762 5.649831 AGTTCTAGATGCATCCCTTTTTGTC 59.350 40.000 23.06 5.56 0.00 3.18
3352 3763 4.526970 TCTAGATGCATCCCTTTTTGTCC 58.473 43.478 23.06 0.00 0.00 4.02
3353 3764 3.173953 AGATGCATCCCTTTTTGTCCA 57.826 42.857 23.06 0.00 0.00 4.02
3354 3765 3.716431 AGATGCATCCCTTTTTGTCCAT 58.284 40.909 23.06 0.00 0.00 3.41
3355 3766 4.098894 AGATGCATCCCTTTTTGTCCATT 58.901 39.130 23.06 0.00 0.00 3.16
3356 3767 4.533311 AGATGCATCCCTTTTTGTCCATTT 59.467 37.500 23.06 0.00 0.00 2.32
3357 3768 4.703379 TGCATCCCTTTTTGTCCATTTT 57.297 36.364 0.00 0.00 0.00 1.82
3358 3769 4.387598 TGCATCCCTTTTTGTCCATTTTG 58.612 39.130 0.00 0.00 0.00 2.44
3359 3770 4.102210 TGCATCCCTTTTTGTCCATTTTGA 59.898 37.500 0.00 0.00 0.00 2.69
3360 3771 5.221884 TGCATCCCTTTTTGTCCATTTTGAT 60.222 36.000 0.00 0.00 0.00 2.57
3361 3772 5.122711 GCATCCCTTTTTGTCCATTTTGATG 59.877 40.000 0.00 0.00 0.00 3.07
3362 3773 6.465948 CATCCCTTTTTGTCCATTTTGATGA 58.534 36.000 0.00 0.00 0.00 2.92
3363 3774 5.852827 TCCCTTTTTGTCCATTTTGATGAC 58.147 37.500 0.00 0.00 0.00 3.06
3364 3775 5.365025 TCCCTTTTTGTCCATTTTGATGACA 59.635 36.000 0.00 0.00 0.00 3.58
3365 3776 6.054295 CCCTTTTTGTCCATTTTGATGACAA 58.946 36.000 0.00 0.00 34.47 3.18
3366 3777 6.203338 CCCTTTTTGTCCATTTTGATGACAAG 59.797 38.462 0.00 0.00 37.13 3.16
3367 3778 6.762661 CCTTTTTGTCCATTTTGATGACAAGT 59.237 34.615 0.00 0.00 37.13 3.16
3368 3779 7.925483 CCTTTTTGTCCATTTTGATGACAAGTA 59.075 33.333 0.00 0.00 37.13 2.24
3369 3780 9.480053 CTTTTTGTCCATTTTGATGACAAGTAT 57.520 29.630 0.00 0.00 37.13 2.12
3370 3781 9.829507 TTTTTGTCCATTTTGATGACAAGTATT 57.170 25.926 0.00 0.00 37.13 1.89
3371 3782 9.829507 TTTTGTCCATTTTGATGACAAGTATTT 57.170 25.926 0.00 0.00 37.13 1.40
3372 3783 9.829507 TTTGTCCATTTTGATGACAAGTATTTT 57.170 25.926 0.00 0.00 37.13 1.82
3373 3784 9.474920 TTGTCCATTTTGATGACAAGTATTTTC 57.525 29.630 0.00 0.00 37.32 2.29
3374 3785 7.807433 TGTCCATTTTGATGACAAGTATTTTCG 59.193 33.333 0.00 0.00 37.32 3.46
3375 3786 7.273381 GTCCATTTTGATGACAAGTATTTTCGG 59.727 37.037 0.00 0.00 37.32 4.30
3376 3787 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
3377 3788 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
3378 3789 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
3379 3790 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
3380 3791 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
3381 3792 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
3382 3793 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
3383 3794 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
3622 4034 0.315251 CACACAGCTCCTCGAAGTCA 59.685 55.000 0.00 0.00 0.00 3.41
3652 4064 3.508793 ACACAAAAGGCAATGAGGATGAG 59.491 43.478 0.00 0.00 0.00 2.90
3790 4203 9.671279 ATGTTCATGTCTTGACATGTAAATCTA 57.329 29.630 30.66 15.46 45.53 1.98
4169 4661 3.336568 AGCCTGCAGCCACTCCAT 61.337 61.111 8.66 0.00 45.47 3.41
4280 4772 2.065799 AGGATGTCCAGGTTTGGTTCT 58.934 47.619 1.30 0.00 45.26 3.01
4281 4773 2.040412 AGGATGTCCAGGTTTGGTTCTC 59.960 50.000 1.30 0.00 45.26 2.87
4302 4794 7.455641 TCTCTTCTTCTCTTTGTATCGAAGT 57.544 36.000 0.00 0.00 35.55 3.01
4363 4855 1.888512 ACTGCCAGTATTGTGCTTTGG 59.111 47.619 0.00 0.00 0.00 3.28
4551 5043 6.761714 CACCTTCTAATGCTAATACTTCCGTT 59.238 38.462 0.00 0.00 0.00 4.44
4749 5241 3.030291 TGGTGCCTTTGAATCAAACACT 58.970 40.909 21.01 0.00 33.66 3.55
4848 5340 1.197721 CCCAAAACTGATGCGTCTGAC 59.802 52.381 18.57 0.00 0.00 3.51
4983 5475 7.394016 ACACCAAGAAAGAAAATTTTCAGGTT 58.606 30.769 28.00 19.44 41.58 3.50
5077 5569 1.063190 TCTCATTTCCTCCTCGCCCTA 60.063 52.381 0.00 0.00 0.00 3.53
5078 5570 1.069358 CTCATTTCCTCCTCGCCCTAC 59.931 57.143 0.00 0.00 0.00 3.18
5144 5637 1.032014 TGCAGCAAAGAAGGTGAACC 58.968 50.000 0.00 0.00 39.26 3.62
5407 5927 3.333804 CACCTGGTGTTTGTTGCTTTTT 58.666 40.909 18.76 0.00 0.00 1.94
5464 5984 3.837213 ATTGGTTTTGTCATCTCGCTG 57.163 42.857 0.00 0.00 0.00 5.18
5534 6054 3.214328 GGTCTTTGTCCAGTGTTGTCAT 58.786 45.455 0.00 0.00 0.00 3.06
5559 6079 2.095161 TGTGTTGTGTTTGTCGGGTTTC 60.095 45.455 0.00 0.00 0.00 2.78
5560 6080 2.162809 GTGTTGTGTTTGTCGGGTTTCT 59.837 45.455 0.00 0.00 0.00 2.52
5569 6089 0.108520 GTCGGGTTTCTGGATACGCA 60.109 55.000 8.36 0.00 42.51 5.24
5579 6099 2.472909 GGATACGCAGCCCTTGTGC 61.473 63.158 0.00 0.00 41.06 4.57
5633 6156 8.458843 GTTATGTGCACCTTCTGTAAATTGTAT 58.541 33.333 15.69 0.00 0.00 2.29
5692 6215 6.704310 CATTCAATTCCTGGGTTTCTGAAAT 58.296 36.000 6.06 0.00 0.00 2.17
5693 6216 7.579339 GCATTCAATTCCTGGGTTTCTGAAATA 60.579 37.037 6.06 0.00 0.00 1.40
5694 6217 6.834168 TCAATTCCTGGGTTTCTGAAATAC 57.166 37.500 6.06 3.43 0.00 1.89
5701 6224 6.727231 TCCTGGGTTTCTGAAATACTACTACA 59.273 38.462 6.06 0.00 0.00 2.74
5703 6226 8.701895 CCTGGGTTTCTGAAATACTACTACATA 58.298 37.037 6.06 0.00 0.00 2.29
5791 6314 1.076332 AAGCGTCCGAACACTAATGC 58.924 50.000 0.00 0.00 0.00 3.56
5898 6421 4.202441 ACAGAGACAAGACAGCAACATTT 58.798 39.130 0.00 0.00 0.00 2.32
5931 6454 7.539712 TTTTGTGTGTTGTGTGAAAGAAAAA 57.460 28.000 0.00 0.00 0.00 1.94
5936 6459 5.570973 TGTGTTGTGTGAAAGAAAAATGACG 59.429 36.000 0.00 0.00 0.00 4.35
5974 6497 2.391389 GCTTCTCTGTTTCGCGGGG 61.391 63.158 6.13 0.00 0.00 5.73
5984 6507 2.171027 TGTTTCGCGGGGTAGGAATATT 59.829 45.455 6.13 0.00 0.00 1.28
6061 6744 6.735130 GTTTACTGAAAACTAGGCACATTGT 58.265 36.000 0.00 0.00 43.52 2.71
6064 6750 5.373222 ACTGAAAACTAGGCACATTGTGTA 58.627 37.500 17.64 3.18 35.75 2.90
6067 6753 5.825679 TGAAAACTAGGCACATTGTGTAGTT 59.174 36.000 19.43 19.43 37.12 2.24
6139 6827 4.112634 TCCTTTGAAATTACAGGTGGCT 57.887 40.909 0.00 0.00 0.00 4.75
6156 6844 5.654209 AGGTGGCTAAGAAGGAAAAATCATC 59.346 40.000 0.00 0.00 0.00 2.92
6157 6845 5.654209 GGTGGCTAAGAAGGAAAAATCATCT 59.346 40.000 0.00 0.00 0.00 2.90
6169 6857 5.221322 GGAAAAATCATCTGGTAGCAATCCC 60.221 44.000 0.00 0.00 0.00 3.85
6170 6858 2.847327 ATCATCTGGTAGCAATCCCG 57.153 50.000 0.00 0.00 0.00 5.14
6334 7024 8.677300 TGGTCAATGCTTATCTTAGAAAACATC 58.323 33.333 0.00 0.00 0.00 3.06
6396 7089 6.573664 ACAATGTATGAGCAACTAAGCAAA 57.426 33.333 0.00 0.00 36.85 3.68
6471 7168 7.723324 TCTACCAGGAACTAGTAAATGTATGC 58.277 38.462 0.00 0.00 36.02 3.14
6490 7187 1.656652 CGTGGTAGAATGCTGGAAGG 58.343 55.000 0.00 0.00 0.00 3.46
6498 7195 3.167485 AGAATGCTGGAAGGAAATGCAA 58.833 40.909 0.00 0.00 38.32 4.08
6499 7196 3.194968 AGAATGCTGGAAGGAAATGCAAG 59.805 43.478 0.00 0.00 38.32 4.01
6500 7197 2.291209 TGCTGGAAGGAAATGCAAGA 57.709 45.000 0.00 0.00 0.00 3.02
6501 7198 1.888512 TGCTGGAAGGAAATGCAAGAC 59.111 47.619 0.00 0.00 0.00 3.01
6502 7199 2.165998 GCTGGAAGGAAATGCAAGACT 58.834 47.619 0.00 0.00 0.00 3.24
6503 7200 2.163211 GCTGGAAGGAAATGCAAGACTC 59.837 50.000 0.00 0.00 0.00 3.36
6504 7201 3.415212 CTGGAAGGAAATGCAAGACTCA 58.585 45.455 0.00 0.00 0.00 3.41
6505 7202 4.015084 CTGGAAGGAAATGCAAGACTCAT 58.985 43.478 0.00 0.00 0.00 2.90
6506 7203 3.760151 TGGAAGGAAATGCAAGACTCATG 59.240 43.478 0.00 0.00 0.00 3.07
6507 7204 3.760684 GGAAGGAAATGCAAGACTCATGT 59.239 43.478 0.00 0.00 0.00 3.21
6508 7205 4.219288 GGAAGGAAATGCAAGACTCATGTT 59.781 41.667 0.00 0.00 0.00 2.71
6509 7206 5.279156 GGAAGGAAATGCAAGACTCATGTTT 60.279 40.000 0.00 0.00 0.00 2.83
6510 7207 5.796424 AGGAAATGCAAGACTCATGTTTT 57.204 34.783 0.00 0.00 0.00 2.43
6511 7208 5.535333 AGGAAATGCAAGACTCATGTTTTG 58.465 37.500 0.00 0.00 40.11 2.44
6519 7216 5.771469 CAAGACTCATGTTTTGCATAACCA 58.229 37.500 16.06 6.19 35.74 3.67
6520 7217 6.215121 CAAGACTCATGTTTTGCATAACCAA 58.785 36.000 16.06 0.57 35.74 3.67
6521 7218 6.403866 AGACTCATGTTTTGCATAACCAAA 57.596 33.333 16.06 0.00 35.74 3.28
6522 7219 6.215845 AGACTCATGTTTTGCATAACCAAAC 58.784 36.000 16.06 10.21 35.74 2.93
6523 7220 5.911752 ACTCATGTTTTGCATAACCAAACA 58.088 33.333 16.06 15.10 35.74 2.83
6524 7221 5.752955 ACTCATGTTTTGCATAACCAAACAC 59.247 36.000 14.16 0.00 35.74 3.32
6525 7222 5.664457 TCATGTTTTGCATAACCAAACACA 58.336 33.333 14.16 3.81 35.74 3.72
6526 7223 5.752472 TCATGTTTTGCATAACCAAACACAG 59.248 36.000 14.16 10.74 35.74 3.66
6527 7224 3.868077 TGTTTTGCATAACCAAACACAGC 59.132 39.130 16.06 0.00 34.68 4.40
6528 7225 2.414058 TTGCATAACCAAACACAGCG 57.586 45.000 0.00 0.00 0.00 5.18
6529 7226 1.313772 TGCATAACCAAACACAGCGT 58.686 45.000 0.00 0.00 0.00 5.07
6530 7227 1.265635 TGCATAACCAAACACAGCGTC 59.734 47.619 0.00 0.00 0.00 5.19
6531 7228 1.401018 GCATAACCAAACACAGCGTCC 60.401 52.381 0.00 0.00 0.00 4.79
6532 7229 1.876799 CATAACCAAACACAGCGTCCA 59.123 47.619 0.00 0.00 0.00 4.02
6533 7230 2.264005 TAACCAAACACAGCGTCCAT 57.736 45.000 0.00 0.00 0.00 3.41
6534 7231 0.667993 AACCAAACACAGCGTCCATG 59.332 50.000 0.00 0.00 0.00 3.66
6535 7232 1.081242 CCAAACACAGCGTCCATGC 60.081 57.895 0.00 0.00 0.00 4.06
6536 7233 1.081242 CAAACACAGCGTCCATGCC 60.081 57.895 0.00 0.00 34.65 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.003301 GACTTCGGAGCATCAGGAAAC 58.997 52.381 0.00 0.00 36.25 2.78
34 35 4.626042 TGCTCTGTGAAGTCTTCTCTTTC 58.374 43.478 13.67 3.07 0.00 2.62
44 45 4.077300 TGAACAATCTGCTCTGTGAAGT 57.923 40.909 0.00 0.00 0.00 3.01
47 48 3.807553 TGTTGAACAATCTGCTCTGTGA 58.192 40.909 0.00 0.00 0.00 3.58
49 50 3.813443 ACTGTTGAACAATCTGCTCTGT 58.187 40.909 0.00 0.00 0.00 3.41
70 71 3.634504 TCCCTAGCGTAGGTGATTGTAA 58.365 45.455 9.33 0.00 44.73 2.41
82 83 2.305314 ATCTGCTCCCTCCCTAGCGT 62.305 60.000 0.00 0.00 41.77 5.07
111 112 0.884704 TTCTTGTCAGAGTTGCGGCC 60.885 55.000 0.00 0.00 0.00 6.13
112 113 0.514691 CTTCTTGTCAGAGTTGCGGC 59.485 55.000 0.00 0.00 0.00 6.53
113 114 1.871080 ACTTCTTGTCAGAGTTGCGG 58.129 50.000 0.00 0.00 0.00 5.69
114 115 2.410053 GCTACTTCTTGTCAGAGTTGCG 59.590 50.000 0.00 0.00 0.00 4.85
115 116 3.431572 CAGCTACTTCTTGTCAGAGTTGC 59.568 47.826 9.70 9.70 33.44 4.17
116 117 4.876125 TCAGCTACTTCTTGTCAGAGTTG 58.124 43.478 0.00 0.00 0.00 3.16
117 118 5.736951 ATCAGCTACTTCTTGTCAGAGTT 57.263 39.130 0.00 0.00 0.00 3.01
118 119 5.736951 AATCAGCTACTTCTTGTCAGAGT 57.263 39.130 0.00 0.00 0.00 3.24
119 120 7.816995 AGTAAAATCAGCTACTTCTTGTCAGAG 59.183 37.037 0.00 0.00 0.00 3.35
147 148 5.754890 ACTTCAATGCACACAAAGAATTTCC 59.245 36.000 0.00 0.00 35.03 3.13
193 194 7.205297 TGTAGAACAACAACTAGAGTTACCAC 58.795 38.462 0.00 0.00 36.32 4.16
291 294 9.322773 TGATTTTAAGACATTGCATTTTGTTGA 57.677 25.926 0.00 0.00 0.00 3.18
296 299 9.275398 ACACATGATTTTAAGACATTGCATTTT 57.725 25.926 0.00 0.00 0.00 1.82
297 300 8.836268 ACACATGATTTTAAGACATTGCATTT 57.164 26.923 0.00 0.00 0.00 2.32
304 516 7.870826 TCAAACGACACATGATTTTAAGACAT 58.129 30.769 0.00 0.00 0.00 3.06
305 517 7.225734 TCTCAAACGACACATGATTTTAAGACA 59.774 33.333 0.00 0.00 0.00 3.41
310 522 8.771920 ATACTCTCAAACGACACATGATTTTA 57.228 30.769 0.00 0.00 0.00 1.52
325 537 6.511121 GCAACAACAGTTCGAATACTCTCAAA 60.511 38.462 0.00 0.00 0.00 2.69
336 548 0.534203 GGGAGGCAACAACAGTTCGA 60.534 55.000 0.00 0.00 41.41 3.71
337 549 0.817634 TGGGAGGCAACAACAGTTCG 60.818 55.000 0.00 0.00 41.41 3.95
339 551 1.480545 GTTTGGGAGGCAACAACAGTT 59.519 47.619 0.00 0.00 41.41 3.16
341 553 1.402787 AGTTTGGGAGGCAACAACAG 58.597 50.000 0.00 0.00 41.41 3.16
347 559 4.479158 ACAAAGAATAGTTTGGGAGGCAA 58.521 39.130 1.74 0.00 41.03 4.52
348 560 4.112634 ACAAAGAATAGTTTGGGAGGCA 57.887 40.909 1.74 0.00 41.03 4.75
349 561 4.809673 CAACAAAGAATAGTTTGGGAGGC 58.190 43.478 1.74 0.00 41.03 4.70
351 563 5.712152 AGCAACAAAGAATAGTTTGGGAG 57.288 39.130 1.74 0.00 41.03 4.30
352 564 6.478512 AAAGCAACAAAGAATAGTTTGGGA 57.521 33.333 1.74 0.00 41.03 4.37
353 565 6.760770 TCAAAAGCAACAAAGAATAGTTTGGG 59.239 34.615 1.74 0.00 41.03 4.12
354 566 7.769272 TCAAAAGCAACAAAGAATAGTTTGG 57.231 32.000 1.74 0.00 41.03 3.28
355 567 8.819974 ACATCAAAAGCAACAAAGAATAGTTTG 58.180 29.630 0.00 0.00 42.21 2.93
386 598 1.657181 GCGGCAAAACCAGTCAACG 60.657 57.895 0.00 0.00 39.03 4.10
404 616 1.141019 CATACCCGTCCCACGTCAG 59.859 63.158 0.00 0.00 40.58 3.51
412 624 1.623542 AAGCACCTCCATACCCGTCC 61.624 60.000 0.00 0.00 0.00 4.79
414 626 0.617820 AGAAGCACCTCCATACCCGT 60.618 55.000 0.00 0.00 0.00 5.28
416 628 1.501582 AGAGAAGCACCTCCATACCC 58.498 55.000 2.27 0.00 33.76 3.69
420 632 2.108952 ACCAAAAGAGAAGCACCTCCAT 59.891 45.455 2.27 0.00 33.76 3.41
456 668 0.755327 AGTGGTGGTGGCTTCAAACC 60.755 55.000 0.00 0.00 36.96 3.27
458 670 2.969821 ATAGTGGTGGTGGCTTCAAA 57.030 45.000 0.00 0.00 0.00 2.69
482 699 7.328277 TGACCCGAAAAGAATAATAACATGG 57.672 36.000 0.00 0.00 0.00 3.66
483 700 9.878599 GTATGACCCGAAAAGAATAATAACATG 57.121 33.333 0.00 0.00 0.00 3.21
484 701 9.621629 TGTATGACCCGAAAAGAATAATAACAT 57.378 29.630 0.00 0.00 0.00 2.71
498 715 1.484653 CAGGTCCATGTATGACCCGAA 59.515 52.381 14.03 0.00 39.70 4.30
533 752 4.137116 TCAGTGGGAATACATACACAGC 57.863 45.455 0.00 0.00 36.35 4.40
545 764 3.561313 GCTAGGTTTGGATTCAGTGGGAA 60.561 47.826 0.00 0.00 40.46 3.97
560 779 5.140454 ACTCTGTTCCAATTTTGCTAGGTT 58.860 37.500 0.00 0.00 0.00 3.50
598 817 2.674380 CCACTCCAAGCCTGGCAC 60.674 66.667 22.65 0.00 43.17 5.01
601 820 1.530013 CTTTGCCACTCCAAGCCTGG 61.530 60.000 0.00 0.00 45.08 4.45
602 821 1.962144 CTTTGCCACTCCAAGCCTG 59.038 57.895 0.00 0.00 0.00 4.85
603 822 1.905354 GCTTTGCCACTCCAAGCCT 60.905 57.895 0.00 0.00 0.00 4.58
608 827 1.005805 ACCATATGCTTTGCCACTCCA 59.994 47.619 0.00 0.00 0.00 3.86
656 928 2.485426 CACCACGAGATGCACATTTCTT 59.515 45.455 0.00 0.00 0.00 2.52
657 929 2.079158 CACCACGAGATGCACATTTCT 58.921 47.619 0.00 0.00 0.00 2.52
679 951 0.478072 ACCATCTGCCACTGAACCAA 59.522 50.000 0.00 0.00 0.00 3.67
681 953 0.250901 ACACCATCTGCCACTGAACC 60.251 55.000 0.00 0.00 0.00 3.62
706 985 3.006940 GTTGGTTGTAATCTGATCGGCA 58.993 45.455 0.00 0.00 0.00 5.69
707 986 2.354821 GGTTGGTTGTAATCTGATCGGC 59.645 50.000 0.00 0.00 0.00 5.54
718 997 3.130516 TGCGAATGTTTTGGTTGGTTGTA 59.869 39.130 0.00 0.00 0.00 2.41
725 1004 5.355596 TCTGATTTTGCGAATGTTTTGGTT 58.644 33.333 0.00 0.00 0.00 3.67
726 1005 4.942852 TCTGATTTTGCGAATGTTTTGGT 58.057 34.783 0.00 0.00 0.00 3.67
727 1006 5.634439 TCATCTGATTTTGCGAATGTTTTGG 59.366 36.000 0.00 0.00 0.00 3.28
728 1007 6.669032 GCTCATCTGATTTTGCGAATGTTTTG 60.669 38.462 0.00 0.00 0.00 2.44
729 1008 5.346822 GCTCATCTGATTTTGCGAATGTTTT 59.653 36.000 0.00 0.00 0.00 2.43
758 1041 5.471456 CACTGGTAATCTCATGGGATTAAGC 59.529 44.000 26.08 19.48 39.10 3.09
784 1070 7.441836 ACTTTTGGTTGGAGAAATGGTAAATC 58.558 34.615 0.00 0.00 0.00 2.17
807 1097 2.678336 GCCAATCTTTTACTGCGCTACT 59.322 45.455 9.73 0.00 0.00 2.57
813 1103 2.030007 TGCACTGCCAATCTTTTACTGC 60.030 45.455 0.00 0.00 0.00 4.40
855 1145 1.154338 CAGCTGCAAACGCACTAGC 60.154 57.895 0.00 0.00 35.03 3.42
932 1222 2.464459 CGGAAGAGGAACCATGCGC 61.464 63.158 0.00 0.00 0.00 6.09
933 1223 1.815421 CCGGAAGAGGAACCATGCG 60.815 63.158 0.00 0.00 0.00 4.73
934 1224 2.115291 GCCGGAAGAGGAACCATGC 61.115 63.158 5.05 0.00 0.00 4.06
976 1266 3.431725 GGCGAAAGGGCGACTTGG 61.432 66.667 0.00 0.00 39.96 3.61
977 1267 3.431725 GGGCGAAAGGGCGACTTG 61.432 66.667 0.00 0.00 43.46 3.16
1136 1445 2.667418 CAGGAGGCTGTGTCTGGG 59.333 66.667 0.00 0.00 0.00 4.45
1350 1659 0.037697 TCAGCAAACGCCGTAGTCAT 60.038 50.000 0.00 0.00 0.00 3.06
1353 1662 1.519408 AATTCAGCAAACGCCGTAGT 58.481 45.000 0.00 0.00 0.00 2.73
1354 1663 2.095969 TCAAATTCAGCAAACGCCGTAG 60.096 45.455 0.00 0.00 0.00 3.51
1355 1664 1.874231 TCAAATTCAGCAAACGCCGTA 59.126 42.857 0.00 0.00 0.00 4.02
1356 1665 0.665835 TCAAATTCAGCAAACGCCGT 59.334 45.000 0.00 0.00 0.00 5.68
1361 1670 3.244976 CCACGGATCAAATTCAGCAAAC 58.755 45.455 0.00 0.00 0.00 2.93
1382 1691 4.751767 AACAGATCAAGATCTCACTCCC 57.248 45.455 9.54 0.00 45.78 4.30
1394 1705 1.264020 GCGCACAGACAAACAGATCAA 59.736 47.619 0.30 0.00 0.00 2.57
1400 1711 2.706432 CACGCGCACAGACAAACA 59.294 55.556 5.73 0.00 0.00 2.83
1405 1716 3.038417 AAGAGCACGCGCACAGAC 61.038 61.111 5.73 0.00 42.27 3.51
1510 1821 5.752712 CAAGAGGAAACAACTTTACAGAGC 58.247 41.667 0.00 0.00 0.00 4.09
1537 1848 6.012337 TCCCATAATTCACAGCTCCATTAA 57.988 37.500 0.00 0.00 0.00 1.40
1540 1851 4.524802 TTCCCATAATTCACAGCTCCAT 57.475 40.909 0.00 0.00 0.00 3.41
1557 1868 1.185315 CCACCACATGAACCATTCCC 58.815 55.000 0.00 0.00 0.00 3.97
1561 1872 1.075601 ACCTCCACCACATGAACCAT 58.924 50.000 0.00 0.00 0.00 3.55
1563 1874 1.247567 CAACCTCCACCACATGAACC 58.752 55.000 0.00 0.00 0.00 3.62
1579 1890 5.712152 AAATTCAAGTGTCATCCTCCAAC 57.288 39.130 0.00 0.00 0.00 3.77
1580 1891 6.239289 GGAAAAATTCAAGTGTCATCCTCCAA 60.239 38.462 0.00 0.00 0.00 3.53
1590 1901 7.228706 CCACACTACTAGGAAAAATTCAAGTGT 59.771 37.037 0.00 0.00 44.17 3.55
1591 1902 7.228706 ACCACACTACTAGGAAAAATTCAAGTG 59.771 37.037 0.00 0.00 38.18 3.16
1603 1914 5.163622 GCATACGTAAACCACACTACTAGGA 60.164 44.000 0.00 0.00 0.00 2.94
1606 1917 5.902613 AGCATACGTAAACCACACTACTA 57.097 39.130 0.00 0.00 0.00 1.82
1607 1918 4.796038 AGCATACGTAAACCACACTACT 57.204 40.909 0.00 0.00 0.00 2.57
1608 1919 4.092383 CCAAGCATACGTAAACCACACTAC 59.908 45.833 0.00 0.00 0.00 2.73
1609 1920 4.247258 CCAAGCATACGTAAACCACACTA 58.753 43.478 0.00 0.00 0.00 2.74
1610 1921 3.071479 CCAAGCATACGTAAACCACACT 58.929 45.455 0.00 0.00 0.00 3.55
1611 1922 2.809696 ACCAAGCATACGTAAACCACAC 59.190 45.455 0.00 0.00 0.00 3.82
1612 1923 3.128852 ACCAAGCATACGTAAACCACA 57.871 42.857 0.00 0.00 0.00 4.17
1613 1924 3.251487 ACAACCAAGCATACGTAAACCAC 59.749 43.478 0.00 0.00 0.00 4.16
1614 1925 3.478509 ACAACCAAGCATACGTAAACCA 58.521 40.909 0.00 0.00 0.00 3.67
1615 1926 3.499157 TGACAACCAAGCATACGTAAACC 59.501 43.478 0.00 0.00 0.00 3.27
1616 1927 4.735662 TGACAACCAAGCATACGTAAAC 57.264 40.909 0.00 0.00 0.00 2.01
1617 1928 5.352016 GGTATGACAACCAAGCATACGTAAA 59.648 40.000 0.00 0.00 43.16 2.01
1618 1929 4.871557 GGTATGACAACCAAGCATACGTAA 59.128 41.667 0.00 0.00 43.16 3.18
1619 1930 4.081586 TGGTATGACAACCAAGCATACGTA 60.082 41.667 0.00 0.00 46.55 3.57
1620 1931 3.267483 GGTATGACAACCAAGCATACGT 58.733 45.455 0.00 0.00 43.16 3.57
1621 1932 3.266636 TGGTATGACAACCAAGCATACG 58.733 45.455 0.00 0.00 46.55 3.06
1631 1942 6.183360 CGAATAGACAACAGTGGTATGACAAC 60.183 42.308 0.00 0.00 0.00 3.32
1636 1947 5.168569 ACACGAATAGACAACAGTGGTATG 58.831 41.667 0.00 0.00 34.28 2.39
1652 1963 3.059884 CTGCTGTGAAGTGTACACGAAT 58.940 45.455 19.93 10.69 40.61 3.34
1654 1965 1.407618 ACTGCTGTGAAGTGTACACGA 59.592 47.619 19.93 5.88 40.61 4.35
1656 1967 1.261619 GCACTGCTGTGAAGTGTACAC 59.738 52.381 25.94 18.56 46.55 2.90
1657 1968 1.138859 AGCACTGCTGTGAAGTGTACA 59.861 47.619 25.94 0.00 46.55 2.90
1658 1969 1.871080 AGCACTGCTGTGAAGTGTAC 58.129 50.000 25.94 7.43 46.55 2.90
1670 1981 4.708726 ATCAATTTCCTTACAGCACTGC 57.291 40.909 0.00 0.00 0.00 4.40
1671 1982 8.461222 TCATTTATCAATTTCCTTACAGCACTG 58.539 33.333 0.00 0.00 0.00 3.66
1768 2080 9.520515 TCTGATTCAGGGCTTAATAATTTATCC 57.479 33.333 13.59 0.00 31.51 2.59
1783 2095 9.050601 GTATTTCAACTTATCTCTGATTCAGGG 57.949 37.037 13.59 10.60 32.35 4.45
1798 2110 5.703592 TGCATTCGGTACTGTATTTCAACTT 59.296 36.000 0.64 0.00 0.00 2.66
1802 2114 4.827692 AGTGCATTCGGTACTGTATTTCA 58.172 39.130 0.64 0.00 41.25 2.69
1811 2123 1.067142 TGTGAGGAGTGCATTCGGTAC 60.067 52.381 2.84 2.79 0.00 3.34
1886 2198 4.095632 TCACTTCTCATCAGACTTCTAGCG 59.904 45.833 0.00 0.00 0.00 4.26
1897 2209 4.871933 TGTAAGCTGTCACTTCTCATCA 57.128 40.909 0.00 0.00 0.00 3.07
1910 2222 7.658179 TCAAAATGACTAGTCTTGTAAGCTG 57.342 36.000 23.01 7.96 0.00 4.24
2112 2424 1.680249 GCACTGATGGAAAGGGAGGTC 60.680 57.143 0.00 0.00 0.00 3.85
2123 2435 2.223735 GGCATCATTTCAGCACTGATGG 60.224 50.000 12.23 0.00 44.08 3.51
2124 2436 2.688446 AGGCATCATTTCAGCACTGATG 59.312 45.455 0.31 7.26 45.77 3.07
2431 2838 5.593095 AGTACTCAATAATCGTCAGTGCCTA 59.407 40.000 0.00 0.00 0.00 3.93
2805 3214 5.924475 ACGGTTTAAGACTGTCAAAGATG 57.076 39.130 10.88 0.00 44.64 2.90
2840 3249 2.551287 CCCAACGTACCTTCATCCACAA 60.551 50.000 0.00 0.00 0.00 3.33
2873 3282 4.020751 GCTGAGCTTGATCTATATGACCCA 60.021 45.833 0.00 0.00 0.00 4.51
2882 3291 2.037901 CCAGAGGCTGAGCTTGATCTA 58.962 52.381 3.72 0.00 32.44 1.98
3056 3465 5.745312 AATACCTTCTATCATGATCCGCA 57.255 39.130 12.53 0.00 0.00 5.69
3082 3491 6.879183 ACGTAGTAAAAATGCTAAGCAGCCC 61.879 44.000 0.00 0.00 44.24 5.19
3191 3602 1.644437 CCCACCATATCCCACTGGCA 61.644 60.000 0.00 0.00 35.88 4.92
3254 3665 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
3255 3666 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
3257 3668 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
3259 3670 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
3260 3671 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
3261 3672 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
3262 3673 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
3264 3675 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
3265 3676 6.657117 TCATTTTGATGACAAGTATTTCCGGA 59.343 34.615 0.00 0.00 37.32 5.14
3266 3677 6.851609 TCATTTTGATGACAAGTATTTCCGG 58.148 36.000 0.00 0.00 37.32 5.14
3275 3686 8.313292 TCCCCTTTTATTCATTTTGATGACAAG 58.687 33.333 0.00 0.00 37.32 3.16
3276 3687 8.200024 TCCCCTTTTATTCATTTTGATGACAA 57.800 30.769 0.00 0.00 0.00 3.18
3278 3689 8.260114 ACATCCCCTTTTATTCATTTTGATGAC 58.740 33.333 0.00 0.00 32.39 3.06
3279 3690 8.378115 ACATCCCCTTTTATTCATTTTGATGA 57.622 30.769 0.00 0.00 32.39 2.92
3282 3693 9.486123 TGATACATCCCCTTTTATTCATTTTGA 57.514 29.630 0.00 0.00 0.00 2.69
3285 3696 9.438163 ACATGATACATCCCCTTTTATTCATTT 57.562 29.630 0.00 0.00 0.00 2.32
3288 3699 9.739276 GATACATGATACATCCCCTTTTATTCA 57.261 33.333 0.00 0.00 0.00 2.57
3289 3700 9.965902 AGATACATGATACATCCCCTTTTATTC 57.034 33.333 0.00 0.00 0.00 1.75
3292 3703 9.837681 TCTAGATACATGATACATCCCCTTTTA 57.162 33.333 0.00 0.00 0.00 1.52
3293 3704 8.742125 TCTAGATACATGATACATCCCCTTTT 57.258 34.615 0.00 0.00 0.00 2.27
3294 3705 8.766476 CATCTAGATACATGATACATCCCCTTT 58.234 37.037 4.54 0.00 0.00 3.11
3295 3706 7.903481 ACATCTAGATACATGATACATCCCCTT 59.097 37.037 4.54 0.00 0.00 3.95
3296 3707 7.425834 ACATCTAGATACATGATACATCCCCT 58.574 38.462 4.54 0.00 0.00 4.79
3297 3708 7.667575 ACATCTAGATACATGATACATCCCC 57.332 40.000 4.54 0.00 0.00 4.81
3316 3727 9.717942 GGATGCATCTAGAACTAAAATACATCT 57.282 33.333 25.28 0.00 31.89 2.90
3317 3728 8.940952 GGGATGCATCTAGAACTAAAATACATC 58.059 37.037 25.28 2.81 0.00 3.06
3318 3729 8.664079 AGGGATGCATCTAGAACTAAAATACAT 58.336 33.333 25.28 0.00 0.00 2.29
3319 3730 8.034313 AGGGATGCATCTAGAACTAAAATACA 57.966 34.615 25.28 0.00 0.00 2.29
3320 3731 8.910351 AAGGGATGCATCTAGAACTAAAATAC 57.090 34.615 25.28 4.15 0.00 1.89
3321 3732 9.920946 AAAAGGGATGCATCTAGAACTAAAATA 57.079 29.630 25.28 0.00 0.00 1.40
3322 3733 8.829373 AAAAGGGATGCATCTAGAACTAAAAT 57.171 30.769 25.28 0.64 0.00 1.82
3323 3734 8.522830 CAAAAAGGGATGCATCTAGAACTAAAA 58.477 33.333 25.28 0.00 0.00 1.52
3324 3735 7.669722 ACAAAAAGGGATGCATCTAGAACTAAA 59.330 33.333 25.28 0.00 0.00 1.85
3325 3736 7.175104 ACAAAAAGGGATGCATCTAGAACTAA 58.825 34.615 25.28 0.00 0.00 2.24
3326 3737 6.721318 ACAAAAAGGGATGCATCTAGAACTA 58.279 36.000 25.28 0.00 0.00 2.24
3327 3738 5.574188 ACAAAAAGGGATGCATCTAGAACT 58.426 37.500 25.28 13.10 0.00 3.01
3328 3739 5.163612 GGACAAAAAGGGATGCATCTAGAAC 60.164 44.000 25.28 8.87 0.00 3.01
3329 3740 4.949856 GGACAAAAAGGGATGCATCTAGAA 59.050 41.667 25.28 0.00 0.00 2.10
3330 3741 4.018506 TGGACAAAAAGGGATGCATCTAGA 60.019 41.667 25.28 0.00 0.00 2.43
3331 3742 4.272489 TGGACAAAAAGGGATGCATCTAG 58.728 43.478 25.28 10.37 0.00 2.43
3332 3743 4.314522 TGGACAAAAAGGGATGCATCTA 57.685 40.909 25.28 0.00 0.00 1.98
3333 3744 3.173953 TGGACAAAAAGGGATGCATCT 57.826 42.857 25.28 4.53 0.00 2.90
3334 3745 4.476628 AATGGACAAAAAGGGATGCATC 57.523 40.909 18.81 18.81 0.00 3.91
3335 3746 4.914177 AAATGGACAAAAAGGGATGCAT 57.086 36.364 0.00 0.00 0.00 3.96
3336 3747 4.102210 TCAAAATGGACAAAAAGGGATGCA 59.898 37.500 0.00 0.00 0.00 3.96
3337 3748 4.640364 TCAAAATGGACAAAAAGGGATGC 58.360 39.130 0.00 0.00 0.00 3.91
3338 3749 6.369615 GTCATCAAAATGGACAAAAAGGGATG 59.630 38.462 0.00 0.00 33.42 3.51
3339 3750 6.043012 TGTCATCAAAATGGACAAAAAGGGAT 59.957 34.615 0.00 0.00 33.42 3.85
3340 3751 5.365025 TGTCATCAAAATGGACAAAAAGGGA 59.635 36.000 0.00 0.00 33.42 4.20
3341 3752 5.609423 TGTCATCAAAATGGACAAAAAGGG 58.391 37.500 0.00 0.00 33.42 3.95
3342 3753 6.762661 ACTTGTCATCAAAATGGACAAAAAGG 59.237 34.615 7.70 0.11 34.98 3.11
3343 3754 7.775397 ACTTGTCATCAAAATGGACAAAAAG 57.225 32.000 7.70 0.11 34.98 2.27
3344 3755 9.829507 AATACTTGTCATCAAAATGGACAAAAA 57.170 25.926 7.70 0.55 34.98 1.94
3345 3756 9.829507 AAATACTTGTCATCAAAATGGACAAAA 57.170 25.926 7.70 0.84 34.98 2.44
3346 3757 9.829507 AAAATACTTGTCATCAAAATGGACAAA 57.170 25.926 7.70 0.00 34.98 2.83
3347 3758 9.474920 GAAAATACTTGTCATCAAAATGGACAA 57.525 29.630 0.00 0.00 34.59 3.18
3348 3759 7.807433 CGAAAATACTTGTCATCAAAATGGACA 59.193 33.333 0.00 0.00 33.42 4.02
3349 3760 7.273381 CCGAAAATACTTGTCATCAAAATGGAC 59.727 37.037 0.00 0.00 33.42 4.02
3350 3761 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
3351 3762 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
3352 3763 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
3353 3764 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
3354 3765 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
3355 3766 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
3356 3767 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
3357 3768 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
3358 3769 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
3359 3770 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
3360 3771 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
3361 3772 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
3362 3773 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
3363 3774 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
3364 3775 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
3365 3776 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
3366 3777 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
3367 3778 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
3368 3779 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
3369 3780 1.753073 GATACTCCCTCCGTCCGAAAA 59.247 52.381 0.00 0.00 0.00 2.29
3370 3781 1.064166 AGATACTCCCTCCGTCCGAAA 60.064 52.381 0.00 0.00 0.00 3.46
3371 3782 0.549950 AGATACTCCCTCCGTCCGAA 59.450 55.000 0.00 0.00 0.00 4.30
3372 3783 1.427809 TAGATACTCCCTCCGTCCGA 58.572 55.000 0.00 0.00 0.00 4.55
3373 3784 2.267174 TTAGATACTCCCTCCGTCCG 57.733 55.000 0.00 0.00 0.00 4.79
3374 3785 4.799917 GCAAATTAGATACTCCCTCCGTCC 60.800 50.000 0.00 0.00 0.00 4.79
3375 3786 4.039366 AGCAAATTAGATACTCCCTCCGTC 59.961 45.833 0.00 0.00 0.00 4.79
3376 3787 3.967987 AGCAAATTAGATACTCCCTCCGT 59.032 43.478 0.00 0.00 0.00 4.69
3377 3788 4.608948 AGCAAATTAGATACTCCCTCCG 57.391 45.455 0.00 0.00 0.00 4.63
3378 3789 7.680730 TCAATAGCAAATTAGATACTCCCTCC 58.319 38.462 0.00 0.00 0.00 4.30
3379 3790 9.561069 TTTCAATAGCAAATTAGATACTCCCTC 57.439 33.333 0.00 0.00 0.00 4.30
3380 3791 9.920946 TTTTCAATAGCAAATTAGATACTCCCT 57.079 29.630 0.00 0.00 0.00 4.20
3622 4034 4.832266 TCATTGCCTTTTGTGTTAGATGGT 59.168 37.500 0.00 0.00 0.00 3.55
3652 4064 4.142816 CCACGAGGATCAAAGTCATCAAAC 60.143 45.833 0.00 0.00 36.89 2.93
3819 4232 7.698836 ACATGCAAATTGAAAAGTGAACTAC 57.301 32.000 0.00 0.00 0.00 2.73
3820 4233 7.865385 GGTACATGCAAATTGAAAAGTGAACTA 59.135 33.333 0.00 0.00 0.00 2.24
4219 4711 1.027357 CTGGGATTGCCGATTGGAAG 58.973 55.000 1.98 0.00 37.49 3.46
4280 4772 6.366332 GCAACTTCGATACAAAGAGAAGAAGA 59.634 38.462 10.50 0.00 41.73 2.87
4281 4773 6.367422 AGCAACTTCGATACAAAGAGAAGAAG 59.633 38.462 10.50 3.03 41.73 2.85
4689 5181 0.520404 GGTTCTGACTCGACGTGCTA 59.480 55.000 0.00 0.00 0.00 3.49
4749 5241 2.504175 GGGGTCTTTAGCTGTATCCACA 59.496 50.000 0.00 0.00 0.00 4.17
4848 5340 0.102120 TTGCAACGAAGGCACCAAAG 59.898 50.000 0.00 0.00 41.75 2.77
4983 5475 3.395607 AGTCAGCCCATATGCCAGATTTA 59.604 43.478 0.00 0.00 0.00 1.40
5053 5545 1.482593 GCGAGGAGGAAATGAGAGGAA 59.517 52.381 0.00 0.00 0.00 3.36
5077 5569 5.069516 ACATTTCTGCAATCAAGTTTCCAGT 59.930 36.000 0.00 0.00 0.00 4.00
5078 5570 5.535333 ACATTTCTGCAATCAAGTTTCCAG 58.465 37.500 0.00 0.00 0.00 3.86
5098 5591 4.252073 GCAGTGAAGAGAGACATCAACAT 58.748 43.478 0.00 0.00 0.00 2.71
5144 5637 1.227263 CGACCCCAACATCGGCTAG 60.227 63.158 0.00 0.00 34.67 3.42
5263 5783 1.139853 CCAGACATTCCTAGGCCAGAC 59.860 57.143 5.01 0.00 0.00 3.51
5407 5927 2.203337 AAAGGCGCAGTCCAGCAA 60.203 55.556 10.83 0.00 34.54 3.91
5464 5984 1.333619 AGCAATGTGACGGTCAACAAC 59.666 47.619 13.23 0.74 0.00 3.32
5534 6054 1.202234 CCGACAAACACAACACATGCA 60.202 47.619 0.00 0.00 0.00 3.96
5559 6079 1.091771 CACAAGGGCTGCGTATCCAG 61.092 60.000 0.00 0.00 35.93 3.86
5560 6080 1.078497 CACAAGGGCTGCGTATCCA 60.078 57.895 0.00 0.00 0.00 3.41
5569 6089 0.968901 CATGATGTGGCACAAGGGCT 60.969 55.000 25.95 7.51 44.16 5.19
5592 6112 9.056005 GGTGCACATAACTATAAGATTGAATCA 57.944 33.333 20.43 0.00 0.00 2.57
5606 6126 6.490040 ACAATTTACAGAAGGTGCACATAACT 59.510 34.615 20.43 11.97 0.00 2.24
5633 6156 2.029110 GCATTACAGAAGCAAAAGGGCA 60.029 45.455 0.00 0.00 35.83 5.36
5692 6215 6.837048 TGCTGATGGTTTCCTATGTAGTAGTA 59.163 38.462 0.00 0.00 0.00 1.82
5693 6216 5.661312 TGCTGATGGTTTCCTATGTAGTAGT 59.339 40.000 0.00 0.00 0.00 2.73
5694 6217 6.161855 TGCTGATGGTTTCCTATGTAGTAG 57.838 41.667 0.00 0.00 0.00 2.57
5701 6224 7.062322 TCAATGTAATGCTGATGGTTTCCTAT 58.938 34.615 0.00 0.00 0.00 2.57
5703 6226 5.263599 TCAATGTAATGCTGATGGTTTCCT 58.736 37.500 0.00 0.00 0.00 3.36
5831 6354 7.461749 AGAGAAAATCAAGGGTAGAATGTCAA 58.538 34.615 0.00 0.00 0.00 3.18
5898 6421 4.142578 ACACAACACACAAAATCAAGCGTA 60.143 37.500 0.00 0.00 0.00 4.42
5931 6454 7.143340 CCAAAATATGAATTCAGCATCGTCAT 58.857 34.615 14.54 0.00 33.63 3.06
5936 6459 7.208080 AGAAGCCAAAATATGAATTCAGCATC 58.792 34.615 14.54 11.55 0.00 3.91
6055 6738 8.458573 TCTTTATTTCCACAACTACACAATGT 57.541 30.769 0.00 0.00 0.00 2.71
6084 6770 9.743057 CATTTGAGTGTTTAACCTCACATTTTA 57.257 29.630 13.17 0.04 37.07 1.52
6119 6807 5.710099 TCTTAGCCACCTGTAATTTCAAAGG 59.290 40.000 0.00 0.00 35.82 3.11
6136 6824 5.654209 ACCAGATGATTTTTCCTTCTTAGCC 59.346 40.000 0.00 0.00 0.00 3.93
6139 6827 7.402054 TGCTACCAGATGATTTTTCCTTCTTA 58.598 34.615 0.00 0.00 0.00 2.10
6156 6844 0.451783 GTTTGCGGGATTGCTACCAG 59.548 55.000 0.00 0.00 35.36 4.00
6157 6845 0.963355 GGTTTGCGGGATTGCTACCA 60.963 55.000 0.00 0.00 38.94 3.25
6169 6857 5.163663 TGCTAATATTTCCTTCTGGTTTGCG 60.164 40.000 0.00 0.00 34.23 4.85
6170 6858 6.207691 TGCTAATATTTCCTTCTGGTTTGC 57.792 37.500 0.00 0.00 34.23 3.68
6334 7024 3.668447 AGTGTAGCAGTCTGTTTGATGG 58.332 45.455 0.93 0.00 0.00 3.51
6427 7124 3.180507 AGATGCTTCCAGGGATATCCTC 58.819 50.000 21.18 11.39 46.12 3.71
6471 7168 1.207089 TCCTTCCAGCATTCTACCACG 59.793 52.381 0.00 0.00 0.00 4.94
6490 7187 4.746115 TGCAAAACATGAGTCTTGCATTTC 59.254 37.500 17.91 1.44 0.00 2.17
6498 7195 6.183360 TGTTTGGTTATGCAAAACATGAGTCT 60.183 34.615 9.09 0.00 43.86 3.24
6499 7196 5.982516 TGTTTGGTTATGCAAAACATGAGTC 59.017 36.000 9.09 0.00 43.86 3.36
6500 7197 5.911752 TGTTTGGTTATGCAAAACATGAGT 58.088 33.333 9.09 0.00 43.86 3.41
6505 7202 3.868077 GCTGTGTTTGGTTATGCAAAACA 59.132 39.130 9.09 9.09 45.83 2.83
6506 7203 3.060607 CGCTGTGTTTGGTTATGCAAAAC 60.061 43.478 4.36 4.36 40.56 2.43
6507 7204 3.119291 CGCTGTGTTTGGTTATGCAAAA 58.881 40.909 0.00 0.00 0.00 2.44
6508 7205 2.099921 ACGCTGTGTTTGGTTATGCAAA 59.900 40.909 0.00 0.00 0.00 3.68
6509 7206 1.678627 ACGCTGTGTTTGGTTATGCAA 59.321 42.857 0.00 0.00 0.00 4.08
6510 7207 1.265635 GACGCTGTGTTTGGTTATGCA 59.734 47.619 0.00 0.00 0.00 3.96
6511 7208 1.401018 GGACGCTGTGTTTGGTTATGC 60.401 52.381 0.00 0.00 0.00 3.14
6512 7209 1.876799 TGGACGCTGTGTTTGGTTATG 59.123 47.619 0.00 0.00 0.00 1.90
6513 7210 2.264005 TGGACGCTGTGTTTGGTTAT 57.736 45.000 0.00 0.00 0.00 1.89
6514 7211 1.876799 CATGGACGCTGTGTTTGGTTA 59.123 47.619 0.00 0.00 0.00 2.85
6515 7212 0.667993 CATGGACGCTGTGTTTGGTT 59.332 50.000 0.00 0.00 0.00 3.67
6516 7213 1.795170 GCATGGACGCTGTGTTTGGT 61.795 55.000 0.00 0.00 0.00 3.67
6517 7214 1.081242 GCATGGACGCTGTGTTTGG 60.081 57.895 0.00 0.00 0.00 3.28
6518 7215 1.081242 GGCATGGACGCTGTGTTTG 60.081 57.895 0.00 0.00 0.00 2.93
6519 7216 3.354678 GGCATGGACGCTGTGTTT 58.645 55.556 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.