AutoCloner

Multiple sequence alignment - TraesCS2B01G460600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2B01G460600	chr2B	100.000	2318	0	0	1	2318	654589484	654587167	0.000000e+00	4281.0
1	TraesCS2B01G460600	chr2B	94.175	721	38	3	784	1504	654528151	654527435	0.000000e+00	1096.0
2	TraesCS2B01G460600	chr2B	90.390	666	41	5	1653	2318	654440403	654439761	0.000000e+00	854.0
3	TraesCS2B01G460600	chr2B	84.778	854	89	26	790	1627	654699568	654698740	0.000000e+00	819.0
4	TraesCS2B01G460600	chr2B	78.289	152	25	4	2144	2287	654718639	654718488	8.820000e-15	91.6
5	TraesCS2B01G460600	chr2B	77.632	152	26	4	2144	2287	654646562	654646411	4.100000e-13	86.1
6	TraesCS2B01G460600	chr2B	77.632	152	26	4	2144	2287	654667752	654667601	4.100000e-13	86.1
7	TraesCS2B01G460600	chr2B	77.358	159	26	6	2138	2287	654677845	654677688	4.100000e-13	86.1
8	TraesCS2B01G460600	chr2B	92.105	38	2	1	741	778	33541140	33541104	4.000000e-03	52.8
9	TraesCS2B01G460600	chr2A	89.675	1414	122	16	911	2318	691159528	691160923	0.000000e+00	1781.0
10	TraesCS2B01G460600	chr2A	89.526	1413	126	12	911	2318	691124571	691125966	0.000000e+00	1770.0
11	TraesCS2B01G460600	chr2A	85.697	832	89	20	790	1609	691119753	691120566	0.000000e+00	850.0
12	TraesCS2B01G460600	chr2A	84.099	849	107	20	798	1635	691115901	691116732	0.000000e+00	795.0
13	TraesCS2B01G460600	chr2A	80.741	270	37	8	1373	1635	691134199	691134460	1.820000e-46	196.0
14	TraesCS2B01G460600	chr2A	94.792	96	4	1	1	96	691158294	691158388	5.160000e-32	148.0
15	TraesCS2B01G460600	chr5A	95.217	690	22	3	94	783	572364985	572364307	0.000000e+00	1081.0
16	TraesCS2B01G460600	chr3D	93.636	660	29	5	94	751	569304236	569303588	0.000000e+00	974.0
17	TraesCS2B01G460600	chr3D	89.398	698	46	17	94	787	18799603	18800276	0.000000e+00	854.0
18	TraesCS2B01G460600	chr3D	100.000	31	0	0	752	782	569290973	569290943	8.950000e-05	58.4
19	TraesCS2B01G460600	chr3A	92.029	690	37	12	97	783	9111356	9110682	0.000000e+00	953.0
20	TraesCS2B01G460600	chr4A	90.504	695	42	11	93	783	702700187	702699513	0.000000e+00	896.0
21	TraesCS2B01G460600	chr2D	85.029	855	102	20	790	1635	547791466	547790629	0.000000e+00	846.0
22	TraesCS2B01G460600	chr2D	91.477	176	11	4	2145	2318	547779886	547779713	2.980000e-59	239.0
23	TraesCS2B01G460600	chr2D	89.444	180	19	0	1978	2157	547780085	547779906	6.440000e-56	228.0
24	TraesCS2B01G460600	chr2D	89.552	134	13	1	1846	1978	547785220	547785087	3.960000e-38	169.0
25	TraesCS2B01G460600	chr2D	87.356	87	11	0	2211	2297	547772585	547772499	1.470000e-17	100.0
26	TraesCS2B01G460600	chrUn	84.877	853	90	25	790	1627	281905491	281906319	0.000000e+00	824.0
27	TraesCS2B01G460600	chrUn	84.760	853	91	25	790	1627	248122880	248122052	0.000000e+00	819.0
28	TraesCS2B01G460600	chr5B	92.605	311	16	3	479	783	17691870	17691561	7.600000e-120	440.0
29	TraesCS2B01G460600	chr5B	89.610	154	15	1	93	246	17700523	17700371	6.540000e-46	195.0
30	TraesCS2B01G460600	chr7B	89.850	266	18	5	94	351	547747019	547747283	1.330000e-87	333.0
31	TraesCS2B01G460600	chr7B	84.677	124	17	2	94	216	747201919	747201797	3.130000e-24	122.0
32	TraesCS2B01G460600	chr4B	83.129	326	30	9	473	781	584099340	584099657	8.160000e-70	274.0
33	TraesCS2B01G460600	chr1B	88.034	117	13	1	97	213	133243056	133243171	1.120000e-28	137.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2B01G460600	chr2B	654587167	654589484	2317	True	4281.0	4281	100.0000	1	2318	1	chr2B.!!$R4	2317
1	TraesCS2B01G460600	chr2B	654527435	654528151	716	True	1096.0	1096	94.1750	784	1504	1	chr2B.!!$R3	720
2	TraesCS2B01G460600	chr2B	654439761	654440403	642	True	854.0	854	90.3900	1653	2318	1	chr2B.!!$R2	665
3	TraesCS2B01G460600	chr2B	654698740	654699568	828	True	819.0	819	84.7780	790	1627	1	chr2B.!!$R8	837
4	TraesCS2B01G460600	chr2A	691124571	691125966	1395	False	1770.0	1770	89.5260	911	2318	1	chr2A.!!$F1	1407
5	TraesCS2B01G460600	chr2A	691158294	691160923	2629	False	964.5	1781	92.2335	1	2318	2	chr2A.!!$F4	2317
6	TraesCS2B01G460600	chr2A	691115901	691120566	4665	False	822.5	850	84.8980	790	1635	2	chr2A.!!$F3	845
7	TraesCS2B01G460600	chr5A	572364307	572364985	678	True	1081.0	1081	95.2170	94	783	1	chr5A.!!$R1	689
8	TraesCS2B01G460600	chr3D	569303588	569304236	648	True	974.0	974	93.6360	94	751	1	chr3D.!!$R2	657
9	TraesCS2B01G460600	chr3D	18799603	18800276	673	False	854.0	854	89.3980	94	787	1	chr3D.!!$F1	693
10	TraesCS2B01G460600	chr3A	9110682	9111356	674	True	953.0	953	92.0290	97	783	1	chr3A.!!$R1	686
11	TraesCS2B01G460600	chr4A	702699513	702700187	674	True	896.0	896	90.5040	93	783	1	chr4A.!!$R1	690
12	TraesCS2B01G460600	chr2D	547790629	547791466	837	True	846.0	846	85.0290	790	1635	1	chr2D.!!$R3	845
13	TraesCS2B01G460600	chrUn	281905491	281906319	828	False	824.0	824	84.8770	790	1627	1	chrUn.!!$F1	837
14	TraesCS2B01G460600	chrUn	248122052	248122880	828	True	819.0	819	84.7600	790	1627	1	chrUn.!!$R1	837

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
475	484	0.253894	CATGCATGTCAGACCCCAGA	59.746	55.0	18.91	0.0	0.0	3.86	F
1175	5265	0.249699	TCGGCTGAATGTTGTGACGT	60.250	50.0	0.00	0.0	0.0	4.34	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1291	5381	0.238289	CAGTTGTTCGGCATGGTGAC	59.762	55.000	0.00	0.0	0.0	3.67	R
2091	6208	3.758554	CCTTGAAATTCTGAATGGACCGT	59.241	43.478	3.22	0.0	0.0	4.83	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
34	35	5.124645	TCATTGCTTTTCTTTGTTGCCAAT	58.875	33.333	0.00	0.00	0.00	3.16
68	69	5.387444	CGTTATCGTTCAACAGTGAGTTCAG	60.387	44.000	0.00	0.00	38.74	3.02
78	79	2.740981	CAGTGAGTTCAGGTGCAGATTC	59.259	50.000	0.00	0.00	0.00	2.52
85	86	5.376625	AGTTCAGGTGCAGATTCTTTTACA	58.623	37.500	0.00	0.00	0.00	2.41
86	87	6.006449	AGTTCAGGTGCAGATTCTTTTACAT	58.994	36.000	0.00	0.00	0.00	2.29
87	88	5.885230	TCAGGTGCAGATTCTTTTACATG	57.115	39.130	0.00	0.00	0.00	3.21
145	147	4.219919	GGTACTCCTTATCTCAGCCTTCT	58.780	47.826	0.00	0.00	0.00	2.85
270	273	1.823610	CATGTGCCTCTGACTCTCTCA	59.176	52.381	0.00	0.00	0.00	3.27
412	419	4.384056	CAGTCACACCTTTTCATGAGAGT	58.616	43.478	0.00	0.00	0.00	3.24
413	420	5.541845	CAGTCACACCTTTTCATGAGAGTA	58.458	41.667	0.00	0.00	0.00	2.59
473	482	1.378911	GCATGCATGTCAGACCCCA	60.379	57.895	26.79	0.00	0.00	4.96
475	484	0.253894	CATGCATGTCAGACCCCAGA	59.746	55.000	18.91	0.00	0.00	3.86
476	485	0.254178	ATGCATGTCAGACCCCAGAC	59.746	55.000	0.00	0.00	35.37	3.51
477	486	1.078143	GCATGTCAGACCCCAGACC	60.078	63.158	0.00	0.00	33.89	3.85
478	487	1.604378	CATGTCAGACCCCAGACCC	59.396	63.158	0.00	0.00	33.89	4.46
479	488	1.616628	ATGTCAGACCCCAGACCCC	60.617	63.158	0.00	0.00	33.89	4.95
654	663	4.467438	TCCAGCAGAGATTACTGTTCATGA	59.533	41.667	0.00	0.00	39.73	3.07
735	744	1.446907	ATCTCGAAGTGTACCGACGT	58.553	50.000	0.00	0.00	0.00	4.34
795	3859	4.836125	AACTTTGCGCATGATATAAGGG	57.164	40.909	12.75	0.00	0.00	3.95
859	3923	6.825610	AGTTTTCCCTTGATGCAAAATACAA	58.174	32.000	0.00	0.00	0.00	2.41
927	5014	4.771590	AAACATTCATCGCACACATTCT	57.228	36.364	0.00	0.00	0.00	2.40
976	5064	3.173151	TCTTCACTAGCAATCCACCAGA	58.827	45.455	0.00	0.00	0.00	3.86
1088	5178	1.614051	GGGTGTTCATGGCATCTGTGA	60.614	52.381	0.00	0.00	0.00	3.58
1175	5265	0.249699	TCGGCTGAATGTTGTGACGT	60.250	50.000	0.00	0.00	0.00	4.34
1223	5313	2.186903	CCGCTACAAGGGCATCGT	59.813	61.111	0.00	0.00	0.00	3.73
1226	5316	2.526120	GCTACAAGGGCATCGTCGC	61.526	63.158	0.00	0.00	0.00	5.19
1422	5519	2.262423	AGTGGAGGAGCACTTGAAAC	57.738	50.000	0.00	0.00	0.00	2.78
1430	5527	0.318955	AGCACTTGAAACGGCATTGC	60.319	50.000	0.00	0.00	0.00	3.56
1458	5559	7.360575	ACTCGGTCTTAATGTTGTGTTATTC	57.639	36.000	0.00	0.00	0.00	1.75
1464	5565	8.928733	GGTCTTAATGTTGTGTTATTCGAAGTA	58.071	33.333	3.35	0.00	0.00	2.24
1508	5618	9.708222	GCTCTTGATAAAATAGTACACATGTTG	57.292	33.333	0.00	0.00	0.00	3.33
1533	5643	4.899502	CTGGAAGTGTAAGGATGTCAAGT	58.100	43.478	0.00	0.00	0.00	3.16
1559	5671	1.475280	CTGGCATGTTGTCCCATGAAG	59.525	52.381	5.39	0.00	43.99	3.02
1566	5678	6.460123	GGCATGTTGTCCCATGAAGTTAATAG	60.460	42.308	5.39	0.00	43.99	1.73
1567	5679	6.095440	GCATGTTGTCCCATGAAGTTAATAGT	59.905	38.462	5.39	0.00	43.99	2.12
1568	5680	7.282224	GCATGTTGTCCCATGAAGTTAATAGTA	59.718	37.037	5.39	0.00	43.99	1.82
1570	5682	8.958119	TGTTGTCCCATGAAGTTAATAGTATC	57.042	34.615	0.00	0.00	0.00	2.24
1598	5711	2.420722	TGGTGTTCTTCGTGTCCAAAAC	59.579	45.455	0.00	0.00	0.00	2.43
1609	5722	3.242712	CGTGTCCAAAACTTGCATGTTTC	59.757	43.478	25.56	15.95	38.98	2.78
1638	5752	8.055181	AGTGAACAAGTAAATATGGATCATGGT	58.945	33.333	0.00	0.00	0.00	3.55
1687	5801	9.582431	GTTAGTTGTATTCAGTTAGTGCTATCA	57.418	33.333	0.00	0.00	0.00	2.15
1777	5894	6.528321	TCATTATCCACCATCTCTTGATGTC	58.472	40.000	5.48	0.00	46.38	3.06
1787	5904	4.855715	TCTCTTGATGTCGAACTGAACT	57.144	40.909	0.00	0.00	0.00	3.01
1833	5950	8.366401	CAGATCAATACTAGTGAGAACCATCAT	58.634	37.037	5.39	0.00	0.00	2.45
1836	5953	6.611236	TCAATACTAGTGAGAACCATCATGGA	59.389	38.462	11.90	0.00	40.96	3.41
1903	6020	6.534475	ACTATCAAGACACCCGTGTATTTA	57.466	37.500	5.15	0.00	41.64	1.40
1929	6046	6.534079	TGCGGCTAGTTTTCTTTATAGAGTTC	59.466	38.462	0.00	0.00	0.00	3.01
1968	6085	6.854496	TGTACGATTAAAGAAACTGCAGTT	57.146	33.333	26.36	26.36	40.50	3.16
1969	6086	6.655062	TGTACGATTAAAGAAACTGCAGTTG	58.345	36.000	31.73	17.84	38.44	3.16
1975	6092	7.059945	CGATTAAAGAAACTGCAGTTGATGTTC	59.940	37.037	31.73	23.48	38.44	3.18
2039	6156	2.564771	CACAACACTTCTCTGGCTTCA	58.435	47.619	0.00	0.00	0.00	3.02
2121	6238	4.656100	TCAGAATTTCAAGGTGATCCCA	57.344	40.909	0.00	0.00	34.66	4.37
2122	6239	4.996793	TCAGAATTTCAAGGTGATCCCAA	58.003	39.130	0.00	0.00	34.66	4.12
2130	6247	5.974156	TCAAGGTGATCCCAAGAATCATA	57.026	39.130	3.45	0.00	34.66	2.15
2131	6248	5.933617	TCAAGGTGATCCCAAGAATCATAG	58.066	41.667	3.45	0.00	34.66	2.23
2135	6252	4.454678	GTGATCCCAAGAATCATAGTGCA	58.545	43.478	0.00	0.00	0.00	4.57
2141	6258	4.891756	CCCAAGAATCATAGTGCAAGGAAT	59.108	41.667	0.00	0.00	0.00	3.01
2226	6343	4.559862	ACTATGCCACTAAAGCTCACTT	57.440	40.909	0.00	0.00	37.90	3.16
2294	6411	0.464870	CATGCTCTGGAGACCCTCTG	59.535	60.000	1.35	0.00	0.00	3.35

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
34	35	6.619744	TGTTGAACGATAACGACTACCATAA	58.380	36.000	0.00	0.00	42.66	1.90
68	69	9.494271	TCTATATCATGTAAAAGAATCTGCACC	57.506	33.333	0.00	0.00	0.00	5.01
85	86	7.873505	GCTAGGAAAAACCGTTCTCTATATCAT	59.126	37.037	0.00	0.00	44.74	2.45
86	87	7.069578	AGCTAGGAAAAACCGTTCTCTATATCA	59.930	37.037	0.00	0.00	44.74	2.15
87	88	7.382759	CAGCTAGGAAAAACCGTTCTCTATATC	59.617	40.741	0.00	0.00	44.74	1.63
145	147	5.892686	TCTCAATGAAACATGGGCATGATTA	59.107	36.000	0.00	0.00	41.20	1.75
195	198	5.295787	TGCCGATGATTAAAGATTAAGCGTT	59.704	36.000	0.00	0.00	0.00	4.84
206	209	3.118075	TCCCTCACATGCCGATGATTAAA	60.118	43.478	0.00	0.00	33.36	1.52
270	273	1.067635	GTTGCATGCACGGGAAGAAAT	60.068	47.619	22.58	0.00	0.00	2.17
412	419	2.438392	TCAGCGTCCCTCTCTCACTATA	59.562	50.000	0.00	0.00	0.00	1.31
413	420	1.213182	TCAGCGTCCCTCTCTCACTAT	59.787	52.381	0.00	0.00	0.00	2.12
473	482	2.105821	CTCTATCTCTCTCACGGGGTCT	59.894	54.545	0.00	0.00	0.00	3.85
475	484	1.477923	GCTCTATCTCTCTCACGGGGT	60.478	57.143	0.00	0.00	0.00	4.95
476	485	1.202879	AGCTCTATCTCTCTCACGGGG	60.203	57.143	0.00	0.00	0.00	5.73
477	486	2.270352	AGCTCTATCTCTCTCACGGG	57.730	55.000	0.00	0.00	0.00	5.28
478	487	3.476552	AGAAGCTCTATCTCTCTCACGG	58.523	50.000	0.00	0.00	0.00	4.94
479	488	4.732285	GAGAAGCTCTATCTCTCTCACG	57.268	50.000	6.65	0.00	40.14	4.35
573	582	5.528690	TCTCATAAAATACTCTGCATGCACC	59.471	40.000	18.46	0.00	0.00	5.01
654	663	3.947196	CTGTAGCTGTCTCACTCTCTCAT	59.053	47.826	0.00	0.00	0.00	2.90
735	744	2.104967	CACGGTACCCACTATCTCCAA	58.895	52.381	6.25	0.00	0.00	3.53
773	782	4.037923	CCCCTTATATCATGCGCAAAGTTT	59.962	41.667	17.11	2.00	0.00	2.66
795	3859	3.733337	CCCACATGTAGAAGCACTATCC	58.267	50.000	0.00	0.00	33.39	2.59
841	3905	6.222389	TGAAGTTTGTATTTTGCATCAAGGG	58.778	36.000	0.00	0.00	0.00	3.95
859	3923	2.107204	AGGCCTCTGTGTTCATGAAGTT	59.893	45.455	8.80	0.00	0.00	2.66
927	5014	6.014647	TGGTCTTAGCTAGGTCTTACTTTGA	58.985	40.000	0.00	0.00	0.00	2.69
1129	5219	2.631062	TGTCCGTCAGGTTATTCACTGT	59.369	45.455	0.00	0.00	39.05	3.55
1226	5316	4.067896	GTGGTACATTCTCAGCCATATGG	58.932	47.826	18.07	18.07	44.52	2.74
1291	5381	0.238289	CAGTTGTTCGGCATGGTGAC	59.762	55.000	0.00	0.00	0.00	3.67
1430	5527	3.303495	CACAACATTAAGACCGAGTAGCG	59.697	47.826	0.00	0.00	40.47	4.26
1501	5604	5.071250	TCCTTACACTTCCAGTACAACATGT	59.929	40.000	0.00	0.00	0.00	3.21
1508	5618	5.401531	TGACATCCTTACACTTCCAGTAC	57.598	43.478	0.00	0.00	0.00	2.73
1528	5638	3.326588	ACAACATGCCAGGTACTACTTGA	59.673	43.478	0.00	0.00	36.02	3.02
1531	5641	2.236395	GGACAACATGCCAGGTACTACT	59.764	50.000	0.00	0.00	36.02	2.57
1532	5642	2.629051	GGACAACATGCCAGGTACTAC	58.371	52.381	0.00	0.00	36.02	2.73
1533	5643	1.557832	GGGACAACATGCCAGGTACTA	59.442	52.381	0.00	0.00	39.10	1.82
1566	5678	7.256286	ACACGAAGAACACCACTATAAGATAC	58.744	38.462	0.00	0.00	0.00	2.24
1567	5679	7.400599	ACACGAAGAACACCACTATAAGATA	57.599	36.000	0.00	0.00	0.00	1.98
1568	5680	6.282199	ACACGAAGAACACCACTATAAGAT	57.718	37.500	0.00	0.00	0.00	2.40
1570	5682	4.863131	GGACACGAAGAACACCACTATAAG	59.137	45.833	0.00	0.00	0.00	1.73
1598	5711	6.498304	ACTTGTTCACTAAGAAACATGCAAG	58.502	36.000	0.00	0.00	39.41	4.01
1647	5761	5.147330	ACAACTAACAGTGATCAATCGGA	57.853	39.130	0.00	0.00	0.00	4.55
1648	5762	7.277760	TGAATACAACTAACAGTGATCAATCGG	59.722	37.037	0.00	0.00	0.00	4.18
1649	5763	8.185003	TGAATACAACTAACAGTGATCAATCG	57.815	34.615	0.00	0.00	0.00	3.34
1650	5764	9.155975	ACTGAATACAACTAACAGTGATCAATC	57.844	33.333	0.00	0.00	39.76	2.67
1655	5769	9.424319	CACTAACTGAATACAACTAACAGTGAT	57.576	33.333	0.00	0.00	40.82	3.06
1687	5801	2.877043	AGACGTTACGACACAGGTTT	57.123	45.000	13.03	0.00	0.00	3.27
1777	5894	2.405357	CAGCTCGTACAAGTTCAGTTCG	59.595	50.000	0.00	0.00	0.00	3.95
1787	5904	6.947644	TCTGGTTATATACAGCTCGTACAA	57.052	37.500	0.00	0.00	34.76	2.41
1833	5950	6.262273	GTGACAGTCAGAAAGGTTATTTTCCA	59.738	38.462	2.53	0.00	37.70	3.53
1836	5953	6.486993	GGAGTGACAGTCAGAAAGGTTATTTT	59.513	38.462	12.31	0.00	0.00	1.82
1903	6020	6.583562	ACTCTATAAAGAAAACTAGCCGCAT	58.416	36.000	0.00	0.00	0.00	4.73
1968	6085	7.809331	GTGCATGTTTTCTAAAGATGAACATCA	59.191	33.333	15.63	13.00	38.22	3.07
1969	6086	7.007725	CGTGCATGTTTTCTAAAGATGAACATC	59.992	37.037	16.20	6.68	38.22	3.06
1975	6092	3.853671	GGCGTGCATGTTTTCTAAAGATG	59.146	43.478	7.93	5.26	0.00	2.90
2039	6156	9.883142	CATAGTTAGATTTTGGAGACTTCTCTT	57.117	33.333	6.22	0.00	42.48	2.85
2091	6208	3.758554	CCTTGAAATTCTGAATGGACCGT	59.241	43.478	3.22	0.00	0.00	4.83
2121	6238	9.905713	TTACTTATTCCTTGCACTATGATTCTT	57.094	29.630	0.00	0.00	0.00	2.52
2122	6239	9.905713	TTTACTTATTCCTTGCACTATGATTCT	57.094	29.630	0.00	0.00	0.00	2.40
2130	6247	6.245408	TGTCCATTTACTTATTCCTTGCACT	58.755	36.000	0.00	0.00	0.00	4.40
2131	6248	6.509418	TGTCCATTTACTTATTCCTTGCAC	57.491	37.500	0.00	0.00	0.00	4.57
2135	6252	5.221048	GCGCATGTCCATTTACTTATTCCTT	60.221	40.000	0.30	0.00	0.00	3.36
2141	6258	5.270893	TCTAGCGCATGTCCATTTACTTA	57.729	39.130	11.47	0.00	0.00	2.24
2226	6343	5.046878	TCCAAATCGAAACTACCTAGCAAGA	60.047	40.000	0.00	0.00	0.00	3.02

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.