Multiple sequence alignment - TraesCS2B01G460400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G460400 chr2B 100.000 2636 0 0 1 2636 654529049 654526414 0.000000e+00 4868.0
1 TraesCS2B01G460400 chr2B 94.175 721 38 3 899 1615 654588701 654587981 0.000000e+00 1096.0
2 TraesCS2B01G460400 chr2B 86.016 851 92 19 776 1611 654649573 654648735 0.000000e+00 887.0
3 TraesCS2B01G460400 chr2B 86.033 852 90 18 776 1611 654727155 654726317 0.000000e+00 887.0
4 TraesCS2B01G460400 chr2B 84.469 895 110 23 728 1611 654546571 654545695 0.000000e+00 856.0
5 TraesCS2B01G460400 chr2B 88.632 563 43 13 350 907 654589938 654589392 0.000000e+00 665.0
6 TraesCS2B01G460400 chr2B 87.452 263 28 5 1 260 654665214 654664954 5.520000e-77 298.0
7 TraesCS2B01G460400 chr2B 87.452 263 28 5 1 260 654675211 654674951 5.520000e-77 298.0
8 TraesCS2B01G460400 chr2B 87.405 262 30 3 1 260 654693997 654693737 5.520000e-77 298.0
9 TraesCS2B01G460400 chr2B 87.405 262 30 3 1 260 654715982 654715722 5.520000e-77 298.0
10 TraesCS2B01G460400 chr2B 86.692 263 30 5 1 260 654643929 654643669 1.190000e-73 287.0
11 TraesCS2B01G460400 chr2B 78.333 240 34 9 489 721 654549860 654549632 3.540000e-29 139.0
12 TraesCS2B01G460400 chr7B 95.436 745 32 2 1892 2636 746978029 746977287 0.000000e+00 1186.0
13 TraesCS2B01G460400 chr7B 83.270 263 38 6 1633 1892 192371985 192371726 1.220000e-58 237.0
14 TraesCS2B01G460400 chr7B 78.788 264 52 4 1629 1889 424914455 424914193 9.700000e-40 174.0
15 TraesCS2B01G460400 chrUn 91.622 752 53 9 1890 2634 2396705 2397453 0.000000e+00 1031.0
16 TraesCS2B01G460400 chrUn 86.251 851 90 19 776 1611 248123008 248122170 0.000000e+00 898.0
17 TraesCS2B01G460400 chrUn 87.452 263 28 5 1 260 281911239 281911499 5.520000e-77 298.0
18 TraesCS2B01G460400 chr2A 91.455 749 62 2 1889 2636 105517541 105516794 0.000000e+00 1027.0
19 TraesCS2B01G460400 chr2A 88.542 864 67 12 195 1042 691157674 691158521 0.000000e+00 1018.0
20 TraesCS2B01G460400 chr2A 90.617 746 67 2 1892 2636 875910 875167 0.000000e+00 987.0
21 TraesCS2B01G460400 chr2A 90.387 749 70 2 1889 2636 715604116 715603369 0.000000e+00 983.0
22 TraesCS2B01G460400 chr2A 89.678 746 74 2 1892 2636 937789 937046 0.000000e+00 948.0
23 TraesCS2B01G460400 chr2A 86.712 873 73 10 192 1042 691122732 691123583 0.000000e+00 929.0
24 TraesCS2B01G460400 chr2A 85.781 858 95 19 767 1611 691119616 691120459 0.000000e+00 883.0
25 TraesCS2B01G460400 chr2A 86.256 211 18 9 1 201 691143633 691143842 4.420000e-53 219.0
26 TraesCS2B01G460400 chr2A 85.542 166 17 6 1 163 691174194 691174355 1.620000e-37 167.0
27 TraesCS2B01G460400 chr2A 79.832 238 33 6 489 721 691168041 691168268 2.720000e-35 159.0
28 TraesCS2B01G460400 chr6A 90.571 753 62 7 1890 2636 587697690 587696941 0.000000e+00 989.0
29 TraesCS2B01G460400 chr6A 88.697 752 77 6 1890 2636 604415294 604416042 0.000000e+00 911.0
30 TraesCS2B01G460400 chr3B 89.096 752 71 9 1890 2636 819349250 819348505 0.000000e+00 924.0
31 TraesCS2B01G460400 chr3B 83.270 263 39 5 1633 1892 368902781 368903041 1.220000e-58 237.0
32 TraesCS2B01G460400 chr3B 81.985 272 44 5 1623 1892 276821958 276821690 2.640000e-55 226.0
33 TraesCS2B01G460400 chr2D 86.439 848 89 23 776 1611 547791594 547790761 0.000000e+00 905.0
34 TraesCS2B01G460400 chr2D 86.084 812 82 23 810 1611 547806737 547805947 0.000000e+00 845.0
35 TraesCS2B01G460400 chr2D 85.099 812 88 24 810 1611 547952174 547951386 0.000000e+00 798.0
36 TraesCS2B01G460400 chr2D 82.051 195 29 5 489 679 547776056 547775864 7.550000e-36 161.0
37 TraesCS2B01G460400 chr2D 78.879 232 20 13 489 710 547953134 547952922 2.130000e-26 130.0
38 TraesCS2B01G460400 chr2D 81.600 125 14 4 602 721 547807595 547807475 7.770000e-16 95.3
39 TraesCS2B01G460400 chr5B 92.996 257 18 0 1631 1887 71983801 71983545 2.480000e-100 375.0
40 TraesCS2B01G460400 chr6B 89.888 267 23 4 1629 1892 214170084 214170349 9.040000e-90 340.0
41 TraesCS2B01G460400 chr4B 88.168 262 27 3 1633 1892 361102492 361102233 2.550000e-80 309.0
42 TraesCS2B01G460400 chr4B 87.594 266 28 4 1630 1892 403436307 403436570 1.190000e-78 303.0
43 TraesCS2B01G460400 chr3D 82.239 259 44 2 1633 1889 306837898 306837640 3.410000e-54 222.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G460400 chr2B 654526414 654529049 2635 True 4868.00 4868 100.0000 1 2636 1 chr2B.!!$R1 2635
1 TraesCS2B01G460400 chr2B 654648735 654649573 838 True 887.00 887 86.0160 776 1611 1 chr2B.!!$R3 835
2 TraesCS2B01G460400 chr2B 654726317 654727155 838 True 887.00 887 86.0330 776 1611 1 chr2B.!!$R8 835
3 TraesCS2B01G460400 chr2B 654587981 654589938 1957 True 880.50 1096 91.4035 350 1615 2 chr2B.!!$R10 1265
4 TraesCS2B01G460400 chr2B 654545695 654549860 4165 True 497.50 856 81.4010 489 1611 2 chr2B.!!$R9 1122
5 TraesCS2B01G460400 chr7B 746977287 746978029 742 True 1186.00 1186 95.4360 1892 2636 1 chr7B.!!$R3 744
6 TraesCS2B01G460400 chrUn 2396705 2397453 748 False 1031.00 1031 91.6220 1890 2634 1 chrUn.!!$F1 744
7 TraesCS2B01G460400 chrUn 248122170 248123008 838 True 898.00 898 86.2510 776 1611 1 chrUn.!!$R1 835
8 TraesCS2B01G460400 chr2A 105516794 105517541 747 True 1027.00 1027 91.4550 1889 2636 1 chr2A.!!$R3 747
9 TraesCS2B01G460400 chr2A 691157674 691158521 847 False 1018.00 1018 88.5420 195 1042 1 chr2A.!!$F2 847
10 TraesCS2B01G460400 chr2A 875167 875910 743 True 987.00 987 90.6170 1892 2636 1 chr2A.!!$R1 744
11 TraesCS2B01G460400 chr2A 715603369 715604116 747 True 983.00 983 90.3870 1889 2636 1 chr2A.!!$R4 747
12 TraesCS2B01G460400 chr2A 937046 937789 743 True 948.00 948 89.6780 1892 2636 1 chr2A.!!$R2 744
13 TraesCS2B01G460400 chr2A 691119616 691123583 3967 False 906.00 929 86.2465 192 1611 2 chr2A.!!$F5 1419
14 TraesCS2B01G460400 chr6A 587696941 587697690 749 True 989.00 989 90.5710 1890 2636 1 chr6A.!!$R1 746
15 TraesCS2B01G460400 chr6A 604415294 604416042 748 False 911.00 911 88.6970 1890 2636 1 chr6A.!!$F1 746
16 TraesCS2B01G460400 chr3B 819348505 819349250 745 True 924.00 924 89.0960 1890 2636 1 chr3B.!!$R2 746
17 TraesCS2B01G460400 chr2D 547790761 547791594 833 True 905.00 905 86.4390 776 1611 1 chr2D.!!$R2 835
18 TraesCS2B01G460400 chr2D 547805947 547807595 1648 True 470.15 845 83.8420 602 1611 2 chr2D.!!$R3 1009
19 TraesCS2B01G460400 chr2D 547951386 547953134 1748 True 464.00 798 81.9890 489 1611 2 chr2D.!!$R4 1122

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
64 65 0.036105 AACAGCTGATGGACGCATGA 60.036 50.0 23.35 0.0 0.0 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1828 5903 0.030638 CAGTTGCACCTCAAAACGGG 59.969 55.0 0.0 0.0 36.26 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.688507 ACGCAGTTGAGTAGTTCATGG 58.311 47.619 0.00 0.00 37.78 3.66
29 30 2.037251 ACGCAGTTGAGTAGTTCATGGT 59.963 45.455 0.00 0.00 37.78 3.55
30 31 3.257375 ACGCAGTTGAGTAGTTCATGGTA 59.743 43.478 0.00 0.00 37.78 3.25
31 32 4.242475 CGCAGTTGAGTAGTTCATGGTAA 58.758 43.478 0.00 0.00 35.27 2.85
32 33 4.870426 CGCAGTTGAGTAGTTCATGGTAAT 59.130 41.667 0.00 0.00 35.27 1.89
33 34 5.351465 CGCAGTTGAGTAGTTCATGGTAATT 59.649 40.000 0.00 0.00 35.27 1.40
34 35 6.455646 CGCAGTTGAGTAGTTCATGGTAATTC 60.456 42.308 0.00 0.00 35.27 2.17
35 36 6.371548 GCAGTTGAGTAGTTCATGGTAATTCA 59.628 38.462 0.00 0.00 35.27 2.57
36 37 7.066284 GCAGTTGAGTAGTTCATGGTAATTCAT 59.934 37.037 0.00 0.00 35.27 2.57
37 38 8.393366 CAGTTGAGTAGTTCATGGTAATTCATG 58.607 37.037 0.00 1.56 44.20 3.07
38 39 7.554118 AGTTGAGTAGTTCATGGTAATTCATGG 59.446 37.037 7.15 0.00 43.33 3.66
39 40 7.194112 TGAGTAGTTCATGGTAATTCATGGA 57.806 36.000 7.15 0.00 43.33 3.41
40 41 7.629157 TGAGTAGTTCATGGTAATTCATGGAA 58.371 34.615 7.15 0.00 43.33 3.53
41 42 8.106462 TGAGTAGTTCATGGTAATTCATGGAAA 58.894 33.333 7.15 0.00 43.33 3.13
42 43 8.281212 AGTAGTTCATGGTAATTCATGGAAAC 57.719 34.615 7.15 5.77 43.33 2.78
60 61 4.606071 AGAACAGCTGATGGACGC 57.394 55.556 23.35 0.00 0.00 5.19
61 62 1.673477 AGAACAGCTGATGGACGCA 59.327 52.632 23.35 0.00 0.00 5.24
62 63 0.251354 AGAACAGCTGATGGACGCAT 59.749 50.000 23.35 0.00 0.00 4.73
63 64 0.376152 GAACAGCTGATGGACGCATG 59.624 55.000 23.35 0.00 0.00 4.06
64 65 0.036105 AACAGCTGATGGACGCATGA 60.036 50.000 23.35 0.00 0.00 3.07
65 66 0.179702 ACAGCTGATGGACGCATGAT 59.820 50.000 23.35 0.00 0.00 2.45
66 67 0.866427 CAGCTGATGGACGCATGATC 59.134 55.000 8.42 0.00 0.00 2.92
67 68 0.466963 AGCTGATGGACGCATGATCA 59.533 50.000 0.00 0.00 0.00 2.92
68 69 1.134310 AGCTGATGGACGCATGATCAA 60.134 47.619 0.00 0.00 0.00 2.57
69 70 1.263484 GCTGATGGACGCATGATCAAG 59.737 52.381 0.00 0.00 0.00 3.02
70 71 2.830104 CTGATGGACGCATGATCAAGA 58.170 47.619 0.00 0.00 0.00 3.02
71 72 2.543012 CTGATGGACGCATGATCAAGAC 59.457 50.000 0.00 0.00 0.00 3.01
72 73 2.093553 TGATGGACGCATGATCAAGACA 60.094 45.455 0.00 0.85 0.00 3.41
73 74 2.470983 TGGACGCATGATCAAGACAA 57.529 45.000 0.00 0.00 0.00 3.18
74 75 2.777094 TGGACGCATGATCAAGACAAA 58.223 42.857 0.00 0.00 0.00 2.83
75 76 2.483877 TGGACGCATGATCAAGACAAAC 59.516 45.455 0.00 0.00 0.00 2.93
76 77 2.744202 GGACGCATGATCAAGACAAACT 59.256 45.455 0.00 0.00 0.00 2.66
77 78 3.932710 GGACGCATGATCAAGACAAACTA 59.067 43.478 0.00 0.00 0.00 2.24
78 79 4.391830 GGACGCATGATCAAGACAAACTAA 59.608 41.667 0.00 0.00 0.00 2.24
79 80 5.065218 GGACGCATGATCAAGACAAACTAAT 59.935 40.000 0.00 0.00 0.00 1.73
80 81 6.403636 GGACGCATGATCAAGACAAACTAATT 60.404 38.462 0.00 0.00 0.00 1.40
81 82 6.546395 ACGCATGATCAAGACAAACTAATTC 58.454 36.000 0.00 0.00 0.00 2.17
82 83 5.674148 CGCATGATCAAGACAAACTAATTCG 59.326 40.000 0.00 0.00 0.00 3.34
83 84 6.455513 CGCATGATCAAGACAAACTAATTCGA 60.456 38.462 0.00 0.00 0.00 3.71
84 85 7.243487 GCATGATCAAGACAAACTAATTCGAA 58.757 34.615 0.00 0.00 0.00 3.71
85 86 7.427606 GCATGATCAAGACAAACTAATTCGAAG 59.572 37.037 3.35 0.00 0.00 3.79
86 87 7.364522 TGATCAAGACAAACTAATTCGAAGG 57.635 36.000 3.35 0.00 0.00 3.46
87 88 7.158697 TGATCAAGACAAACTAATTCGAAGGA 58.841 34.615 3.35 0.00 0.00 3.36
88 89 7.331934 TGATCAAGACAAACTAATTCGAAGGAG 59.668 37.037 3.35 5.78 0.00 3.69
89 90 5.408604 TCAAGACAAACTAATTCGAAGGAGC 59.591 40.000 3.35 0.00 0.00 4.70
90 91 4.894784 AGACAAACTAATTCGAAGGAGCA 58.105 39.130 3.35 0.00 0.00 4.26
91 92 4.932200 AGACAAACTAATTCGAAGGAGCAG 59.068 41.667 3.35 0.00 0.00 4.24
92 93 4.894784 ACAAACTAATTCGAAGGAGCAGA 58.105 39.130 3.35 0.00 0.00 4.26
93 94 5.305585 ACAAACTAATTCGAAGGAGCAGAA 58.694 37.500 3.35 0.00 0.00 3.02
94 95 5.763204 ACAAACTAATTCGAAGGAGCAGAAA 59.237 36.000 3.35 0.00 0.00 2.52
95 96 5.864628 AACTAATTCGAAGGAGCAGAAAC 57.135 39.130 3.35 0.00 0.00 2.78
96 97 3.927142 ACTAATTCGAAGGAGCAGAAACG 59.073 43.478 3.35 0.00 0.00 3.60
97 98 2.743636 ATTCGAAGGAGCAGAAACGA 57.256 45.000 3.35 0.00 0.00 3.85
98 99 2.743636 TTCGAAGGAGCAGAAACGAT 57.256 45.000 0.00 0.00 0.00 3.73
99 100 3.861276 TTCGAAGGAGCAGAAACGATA 57.139 42.857 0.00 0.00 0.00 2.92
100 101 4.386867 TTCGAAGGAGCAGAAACGATAT 57.613 40.909 0.00 0.00 0.00 1.63
101 102 3.706698 TCGAAGGAGCAGAAACGATATG 58.293 45.455 0.00 0.00 0.00 1.78
102 103 3.380320 TCGAAGGAGCAGAAACGATATGA 59.620 43.478 0.00 0.00 0.00 2.15
103 104 3.487574 CGAAGGAGCAGAAACGATATGAC 59.512 47.826 0.00 0.00 0.00 3.06
104 105 4.433615 GAAGGAGCAGAAACGATATGACA 58.566 43.478 0.00 0.00 0.00 3.58
105 106 4.052159 AGGAGCAGAAACGATATGACAG 57.948 45.455 0.00 0.00 0.00 3.51
106 107 3.126831 GGAGCAGAAACGATATGACAGG 58.873 50.000 0.00 0.00 0.00 4.00
107 108 3.181475 GGAGCAGAAACGATATGACAGGA 60.181 47.826 0.00 0.00 0.00 3.86
108 109 4.047822 GAGCAGAAACGATATGACAGGAG 58.952 47.826 0.00 0.00 0.00 3.69
109 110 3.701542 AGCAGAAACGATATGACAGGAGA 59.298 43.478 0.00 0.00 0.00 3.71
110 111 4.160439 AGCAGAAACGATATGACAGGAGAA 59.840 41.667 0.00 0.00 0.00 2.87
111 112 5.053145 GCAGAAACGATATGACAGGAGAAT 58.947 41.667 0.00 0.00 0.00 2.40
112 113 5.176590 GCAGAAACGATATGACAGGAGAATC 59.823 44.000 0.00 0.00 0.00 2.52
113 114 6.276091 CAGAAACGATATGACAGGAGAATCA 58.724 40.000 0.00 0.00 36.25 2.57
114 115 6.758416 CAGAAACGATATGACAGGAGAATCAA 59.242 38.462 0.00 0.00 36.25 2.57
115 116 7.440556 CAGAAACGATATGACAGGAGAATCAAT 59.559 37.037 0.00 0.00 36.25 2.57
116 117 7.989741 AGAAACGATATGACAGGAGAATCAATT 59.010 33.333 0.00 0.00 36.25 2.32
117 118 8.511604 AAACGATATGACAGGAGAATCAATTT 57.488 30.769 0.00 0.00 36.25 1.82
118 119 7.488187 ACGATATGACAGGAGAATCAATTTG 57.512 36.000 0.00 0.00 36.25 2.32
119 120 7.275183 ACGATATGACAGGAGAATCAATTTGA 58.725 34.615 0.75 0.75 36.25 2.69
120 121 7.935755 ACGATATGACAGGAGAATCAATTTGAT 59.064 33.333 6.06 6.06 39.09 2.57
121 122 8.228464 CGATATGACAGGAGAATCAATTTGATG 58.772 37.037 12.50 3.59 37.15 3.07
122 123 5.571784 TGACAGGAGAATCAATTTGATGC 57.428 39.130 12.50 10.75 37.15 3.91
123 124 5.258841 TGACAGGAGAATCAATTTGATGCT 58.741 37.500 18.14 18.14 45.31 3.79
124 125 5.124936 TGACAGGAGAATCAATTTGATGCTG 59.875 40.000 22.18 17.99 42.74 4.41
125 126 5.258841 ACAGGAGAATCAATTTGATGCTGA 58.741 37.500 22.18 0.00 42.74 4.26
126 127 5.713389 ACAGGAGAATCAATTTGATGCTGAA 59.287 36.000 22.18 0.00 42.74 3.02
127 128 6.209986 ACAGGAGAATCAATTTGATGCTGAAA 59.790 34.615 22.18 0.00 42.74 2.69
128 129 7.094631 CAGGAGAATCAATTTGATGCTGAAAA 58.905 34.615 22.18 0.00 42.74 2.29
129 130 7.601130 CAGGAGAATCAATTTGATGCTGAAAAA 59.399 33.333 22.18 0.00 42.74 1.94
148 149 4.302559 AAAATCAGGAGTGTAAGGGGAC 57.697 45.455 0.00 0.00 0.00 4.46
149 150 1.486211 ATCAGGAGTGTAAGGGGACG 58.514 55.000 0.00 0.00 0.00 4.79
150 151 0.406750 TCAGGAGTGTAAGGGGACGA 59.593 55.000 0.00 0.00 0.00 4.20
151 152 1.203087 TCAGGAGTGTAAGGGGACGAA 60.203 52.381 0.00 0.00 0.00 3.85
152 153 1.204941 CAGGAGTGTAAGGGGACGAAG 59.795 57.143 0.00 0.00 0.00 3.79
153 154 0.108281 GGAGTGTAAGGGGACGAAGC 60.108 60.000 0.00 0.00 0.00 3.86
154 155 0.458025 GAGTGTAAGGGGACGAAGCG 60.458 60.000 0.00 0.00 0.00 4.68
155 156 0.896940 AGTGTAAGGGGACGAAGCGA 60.897 55.000 0.00 0.00 0.00 4.93
156 157 0.458025 GTGTAAGGGGACGAAGCGAG 60.458 60.000 0.00 0.00 0.00 5.03
157 158 1.518792 GTAAGGGGACGAAGCGAGC 60.519 63.158 0.00 0.00 0.00 5.03
158 159 2.718073 TAAGGGGACGAAGCGAGCC 61.718 63.158 0.00 0.00 0.00 4.70
164 165 3.362797 ACGAAGCGAGCCGTCAGA 61.363 61.111 0.00 0.00 33.23 3.27
165 166 2.578178 CGAAGCGAGCCGTCAGAG 60.578 66.667 0.00 0.00 0.00 3.35
166 167 2.878429 GAAGCGAGCCGTCAGAGA 59.122 61.111 0.00 0.00 0.00 3.10
167 168 1.226547 GAAGCGAGCCGTCAGAGAG 60.227 63.158 0.00 0.00 0.00 3.20
168 169 1.928706 GAAGCGAGCCGTCAGAGAGT 61.929 60.000 0.00 0.00 0.00 3.24
169 170 1.928706 AAGCGAGCCGTCAGAGAGTC 61.929 60.000 0.00 0.00 0.00 3.36
170 171 2.691771 GCGAGCCGTCAGAGAGTCA 61.692 63.158 0.00 0.00 0.00 3.41
171 172 1.135731 CGAGCCGTCAGAGAGTCAC 59.864 63.158 0.00 0.00 0.00 3.67
172 173 1.302383 CGAGCCGTCAGAGAGTCACT 61.302 60.000 0.00 0.00 0.00 3.41
173 174 0.450184 GAGCCGTCAGAGAGTCACTC 59.550 60.000 0.00 0.00 45.22 3.51
184 185 3.728845 GAGAGTCACTCTAGAGATCGCT 58.271 50.000 26.57 19.34 41.35 4.93
185 186 3.466836 AGAGTCACTCTAGAGATCGCTG 58.533 50.000 26.57 13.30 39.28 5.18
186 187 3.133901 AGAGTCACTCTAGAGATCGCTGA 59.866 47.826 26.57 15.40 39.28 4.26
187 188 3.202906 AGTCACTCTAGAGATCGCTGAC 58.797 50.000 26.57 24.60 0.00 3.51
188 189 2.033236 GTCACTCTAGAGATCGCTGACG 60.033 54.545 26.57 0.00 42.01 4.35
189 190 1.262950 CACTCTAGAGATCGCTGACGG 59.737 57.143 26.57 0.00 40.63 4.79
190 191 1.134340 ACTCTAGAGATCGCTGACGGT 60.134 52.381 26.57 0.00 40.63 4.83
191 192 1.262950 CTCTAGAGATCGCTGACGGTG 59.737 57.143 15.05 0.00 40.63 4.94
192 193 1.134491 TCTAGAGATCGCTGACGGTGA 60.134 52.381 9.48 0.00 40.63 4.02
193 194 1.262950 CTAGAGATCGCTGACGGTGAG 59.737 57.143 9.48 0.00 40.63 3.51
210 211 2.361230 GCAGTGGGGCCTACAACC 60.361 66.667 22.87 5.85 0.00 3.77
233 234 0.460987 CGCATCTTGTGGTCTCCTCC 60.461 60.000 0.00 0.00 0.00 4.30
260 261 3.702048 CGGCTTGGTCGGAGGGAA 61.702 66.667 0.00 0.00 0.00 3.97
265 266 0.690762 CTTGGTCGGAGGGAAAAGGA 59.309 55.000 0.00 0.00 0.00 3.36
269 270 1.490910 GGTCGGAGGGAAAAGGATGAT 59.509 52.381 0.00 0.00 0.00 2.45
278 279 2.359900 GAAAAGGATGATGTCGCTGGT 58.640 47.619 0.00 0.00 0.00 4.00
308 309 2.967615 GGAGTAATGGCCGCGCTC 60.968 66.667 5.56 0.00 0.00 5.03
391 407 2.456287 AAAGTGAGGACCTGCTCGCC 62.456 60.000 0.00 0.00 0.00 5.54
410 426 0.533491 CTCCCACGGTAATGGTCGAA 59.467 55.000 0.00 0.00 38.16 3.71
416 432 0.390603 CGGTAATGGTCGAACTGCCA 60.391 55.000 0.33 0.00 39.33 4.92
439 455 2.032071 CCACCCTGGTTCGACCAC 59.968 66.667 3.02 0.00 44.79 4.16
440 456 2.813726 CCACCCTGGTTCGACCACA 61.814 63.158 3.02 0.00 44.79 4.17
441 457 1.147376 CACCCTGGTTCGACCACAA 59.853 57.895 3.02 0.00 44.79 3.33
442 458 1.147600 ACCCTGGTTCGACCACAAC 59.852 57.895 3.02 0.00 44.79 3.32
443 459 1.147376 CCCTGGTTCGACCACAACA 59.853 57.895 3.02 0.00 44.79 3.33
444 460 0.884704 CCCTGGTTCGACCACAACAG 60.885 60.000 3.02 0.00 44.79 3.16
445 461 0.105964 CCTGGTTCGACCACAACAGA 59.894 55.000 1.37 0.00 44.79 3.41
446 462 1.502231 CTGGTTCGACCACAACAGAG 58.498 55.000 0.00 0.00 44.79 3.35
447 463 0.105964 TGGTTCGACCACAACAGAGG 59.894 55.000 3.02 0.00 44.79 3.69
448 464 1.228657 GGTTCGACCACAACAGAGGC 61.229 60.000 0.00 0.00 38.42 4.70
449 465 0.531974 GTTCGACCACAACAGAGGCA 60.532 55.000 0.00 0.00 0.00 4.75
450 466 0.531974 TTCGACCACAACAGAGGCAC 60.532 55.000 0.00 0.00 0.00 5.01
451 467 1.227527 CGACCACAACAGAGGCACA 60.228 57.895 0.00 0.00 0.00 4.57
452 468 1.224069 CGACCACAACAGAGGCACAG 61.224 60.000 0.00 0.00 0.00 3.66
453 469 0.106708 GACCACAACAGAGGCACAGA 59.893 55.000 0.00 0.00 0.00 3.41
454 470 0.107456 ACCACAACAGAGGCACAGAG 59.893 55.000 0.00 0.00 0.00 3.35
466 482 2.393271 GCACAGAGCCACAGACTAAT 57.607 50.000 0.00 0.00 37.23 1.73
486 502 2.357056 CACGCCCCCAAACCCATA 59.643 61.111 0.00 0.00 0.00 2.74
546 568 1.203313 GTGTTACGTGTTCGCCTGC 59.797 57.895 0.00 0.00 41.18 4.85
635 661 8.489489 TGGTCTGAAGAAAATATCTCAAGCTAT 58.511 33.333 0.00 0.00 37.42 2.97
725 4072 6.477033 CCTTGTCTAGTGATTAACCAGAATCG 59.523 42.308 0.00 0.00 38.46 3.34
869 4223 5.171147 ACTATGGTAGTCGTTCTCATTCG 57.829 43.478 0.00 0.00 32.47 3.34
1228 5286 6.680810 TGTCGAATGATGAATTCAAGCTTTT 58.319 32.000 13.09 6.26 44.34 2.27
1256 5314 1.377987 GGCGGCAGTGAATAACCCA 60.378 57.895 3.07 0.00 0.00 4.51
1258 5316 0.885196 GCGGCAGTGAATAACCCAAA 59.115 50.000 0.00 0.00 0.00 3.28
1319 5377 2.579873 GCCAACCTATCATGCATCTGT 58.420 47.619 0.00 0.00 0.00 3.41
1435 5498 2.222663 CGAACAACTGCTCGTGATGATG 60.223 50.000 0.00 0.00 0.00 3.07
1464 5533 3.444388 ACTACCTATAAGCATCTAGGCGC 59.556 47.826 0.00 0.00 38.47 6.53
1465 5534 2.530701 ACCTATAAGCATCTAGGCGCT 58.469 47.619 7.64 1.41 38.47 5.92
1552 5621 2.472695 AAAGGCATTGTGCTACTCGA 57.527 45.000 1.64 0.00 44.28 4.04
1560 5629 5.237344 GGCATTGTGCTACTCGATCTTAATT 59.763 40.000 1.64 0.00 44.28 1.40
1587 5662 8.862325 TGTGTTATTGGAAGTGTGATTATCTT 57.138 30.769 0.00 0.00 0.00 2.40
1615 5690 7.470289 AAGCTCTTGATAAAATAGTACGCAG 57.530 36.000 0.00 0.00 0.00 5.18
1616 5691 5.986135 AGCTCTTGATAAAATAGTACGCAGG 59.014 40.000 0.00 0.00 0.00 4.85
1617 5692 5.983720 GCTCTTGATAAAATAGTACGCAGGA 59.016 40.000 0.00 0.00 0.00 3.86
1618 5693 6.479001 GCTCTTGATAAAATAGTACGCAGGAA 59.521 38.462 0.00 0.00 0.00 3.36
1619 5694 7.011109 GCTCTTGATAAAATAGTACGCAGGAAA 59.989 37.037 0.00 0.00 0.00 3.13
1621 5696 8.826710 TCTTGATAAAATAGTACGCAGGAAATG 58.173 33.333 0.00 0.00 0.00 2.32
1622 5697 7.490962 TGATAAAATAGTACGCAGGAAATGG 57.509 36.000 0.00 0.00 0.00 3.16
1624 5699 7.771361 TGATAAAATAGTACGCAGGAAATGGAA 59.229 33.333 0.00 0.00 0.00 3.53
1625 5700 6.827586 AAAATAGTACGCAGGAAATGGAAA 57.172 33.333 0.00 0.00 0.00 3.13
1626 5701 6.827586 AAATAGTACGCAGGAAATGGAAAA 57.172 33.333 0.00 0.00 0.00 2.29
1628 5703 2.488153 AGTACGCAGGAAATGGAAAAGC 59.512 45.455 0.00 0.00 0.00 3.51
1629 5704 0.603065 ACGCAGGAAATGGAAAAGCC 59.397 50.000 0.00 0.00 37.10 4.35
1659 5734 6.456795 AAAAATAATGAGGCTAGCCAACTC 57.543 37.500 34.70 23.45 38.92 3.01
1660 5735 4.778213 AATAATGAGGCTAGCCAACTCA 57.222 40.909 34.70 28.00 44.44 3.41
1661 5736 2.409948 AATGAGGCTAGCCAACTCAC 57.590 50.000 34.70 17.69 43.29 3.51
1662 5737 0.543749 ATGAGGCTAGCCAACTCACC 59.456 55.000 34.70 14.41 43.29 4.02
1663 5738 0.545309 TGAGGCTAGCCAACTCACCT 60.545 55.000 34.70 12.30 36.41 4.00
1664 5739 0.176910 GAGGCTAGCCAACTCACCTC 59.823 60.000 34.70 17.26 39.58 3.85
1665 5740 1.222113 GGCTAGCCAACTCACCTCC 59.778 63.158 29.33 0.00 35.81 4.30
1666 5741 1.553690 GGCTAGCCAACTCACCTCCA 61.554 60.000 29.33 0.00 35.81 3.86
1667 5742 0.107945 GCTAGCCAACTCACCTCCAG 60.108 60.000 2.29 0.00 0.00 3.86
1668 5743 1.561643 CTAGCCAACTCACCTCCAGA 58.438 55.000 0.00 0.00 0.00 3.86
1669 5744 1.902508 CTAGCCAACTCACCTCCAGAA 59.097 52.381 0.00 0.00 0.00 3.02
1670 5745 0.689623 AGCCAACTCACCTCCAGAAG 59.310 55.000 0.00 0.00 0.00 2.85
1678 5753 3.093172 CCTCCAGAAGGCTCCCCC 61.093 72.222 0.00 0.00 38.67 5.40
1679 5754 3.474570 CTCCAGAAGGCTCCCCCG 61.475 72.222 0.00 0.00 39.21 5.73
1680 5755 3.984186 CTCCAGAAGGCTCCCCCGA 62.984 68.421 0.00 0.00 39.21 5.14
1681 5756 2.770048 CCAGAAGGCTCCCCCGAT 60.770 66.667 0.00 0.00 39.21 4.18
1682 5757 2.378634 CCAGAAGGCTCCCCCGATT 61.379 63.158 0.00 0.00 39.21 3.34
1683 5758 1.153086 CAGAAGGCTCCCCCGATTG 60.153 63.158 0.00 0.00 39.21 2.67
1684 5759 2.193248 GAAGGCTCCCCCGATTGG 59.807 66.667 0.00 0.00 39.21 3.16
1694 5769 4.924019 CCGATTGGGCACTCGTTA 57.076 55.556 0.00 0.00 32.54 3.18
1695 5770 2.677971 CCGATTGGGCACTCGTTAG 58.322 57.895 0.00 0.00 32.54 2.34
1696 5771 1.429148 CCGATTGGGCACTCGTTAGC 61.429 60.000 0.00 0.00 32.54 3.09
1701 5776 2.260434 GGCACTCGTTAGCCGTCA 59.740 61.111 0.00 0.00 41.70 4.35
1702 5777 1.805945 GGCACTCGTTAGCCGTCAG 60.806 63.158 0.00 0.00 41.70 3.51
1703 5778 1.211969 GCACTCGTTAGCCGTCAGA 59.788 57.895 0.00 0.00 37.94 3.27
1704 5779 0.179134 GCACTCGTTAGCCGTCAGAT 60.179 55.000 0.00 0.00 37.94 2.90
1705 5780 1.828832 CACTCGTTAGCCGTCAGATC 58.171 55.000 0.00 0.00 37.94 2.75
1706 5781 1.402259 CACTCGTTAGCCGTCAGATCT 59.598 52.381 0.00 0.00 37.94 2.75
1707 5782 1.402259 ACTCGTTAGCCGTCAGATCTG 59.598 52.381 17.07 17.07 37.94 2.90
1708 5783 0.100682 TCGTTAGCCGTCAGATCTGC 59.899 55.000 18.36 11.88 37.94 4.26
1709 5784 0.101399 CGTTAGCCGTCAGATCTGCT 59.899 55.000 18.36 13.68 37.84 4.24
1710 5785 1.846541 GTTAGCCGTCAGATCTGCTC 58.153 55.000 18.36 11.97 35.34 4.26
1711 5786 1.407258 GTTAGCCGTCAGATCTGCTCT 59.593 52.381 18.36 12.99 35.34 4.09
1712 5787 1.769026 TAGCCGTCAGATCTGCTCTT 58.231 50.000 18.36 5.02 35.34 2.85
1713 5788 0.459489 AGCCGTCAGATCTGCTCTTC 59.541 55.000 18.36 5.87 29.16 2.87
1714 5789 0.174389 GCCGTCAGATCTGCTCTTCA 59.826 55.000 18.36 0.00 29.16 3.02
1715 5790 1.404717 GCCGTCAGATCTGCTCTTCAA 60.405 52.381 18.36 0.00 29.16 2.69
1716 5791 2.538437 CCGTCAGATCTGCTCTTCAAG 58.462 52.381 18.36 2.02 29.16 3.02
1724 5799 2.738521 GCTCTTCAAGCGCGTCCA 60.739 61.111 8.43 0.00 42.21 4.02
1725 5800 2.317609 GCTCTTCAAGCGCGTCCAA 61.318 57.895 8.43 0.00 42.21 3.53
1726 5801 1.784062 CTCTTCAAGCGCGTCCAAG 59.216 57.895 8.43 3.35 0.00 3.61
1727 5802 2.174349 CTTCAAGCGCGTCCAAGC 59.826 61.111 8.43 0.00 0.00 4.01
1728 5803 3.314388 CTTCAAGCGCGTCCAAGCC 62.314 63.158 8.43 0.00 0.00 4.35
1748 5823 3.805928 TGGATCTCCACAGCGGTT 58.194 55.556 0.00 0.00 42.01 4.44
1749 5824 2.985001 TGGATCTCCACAGCGGTTA 58.015 52.632 0.00 0.00 42.01 2.85
1750 5825 1.271856 TGGATCTCCACAGCGGTTAA 58.728 50.000 0.00 0.00 42.01 2.01
1751 5826 1.626321 TGGATCTCCACAGCGGTTAAA 59.374 47.619 0.00 0.00 42.01 1.52
1752 5827 2.039216 TGGATCTCCACAGCGGTTAAAA 59.961 45.455 0.00 0.00 42.01 1.52
1753 5828 2.418976 GGATCTCCACAGCGGTTAAAAC 59.581 50.000 0.00 0.00 35.57 2.43
1754 5829 2.922740 TCTCCACAGCGGTTAAAACT 57.077 45.000 0.00 0.00 35.57 2.66
1755 5830 2.489971 TCTCCACAGCGGTTAAAACTG 58.510 47.619 0.00 0.00 38.33 3.16
1756 5831 2.103432 TCTCCACAGCGGTTAAAACTGA 59.897 45.455 5.85 0.00 37.48 3.41
1757 5832 3.074412 CTCCACAGCGGTTAAAACTGAT 58.926 45.455 5.85 0.00 37.48 2.90
1758 5833 3.482436 TCCACAGCGGTTAAAACTGATT 58.518 40.909 5.85 0.00 37.48 2.57
1759 5834 3.886505 TCCACAGCGGTTAAAACTGATTT 59.113 39.130 5.85 0.00 37.48 2.17
1760 5835 4.339814 TCCACAGCGGTTAAAACTGATTTT 59.660 37.500 5.85 0.00 37.48 1.82
1761 5836 4.679654 CCACAGCGGTTAAAACTGATTTTC 59.320 41.667 5.85 0.00 38.91 2.29
1762 5837 5.277825 CACAGCGGTTAAAACTGATTTTCA 58.722 37.500 5.85 0.00 38.91 2.69
1763 5838 5.173131 CACAGCGGTTAAAACTGATTTTCAC 59.827 40.000 5.85 0.00 38.91 3.18
1764 5839 5.067283 ACAGCGGTTAAAACTGATTTTCACT 59.933 36.000 5.85 0.00 38.91 3.41
1765 5840 5.977129 CAGCGGTTAAAACTGATTTTCACTT 59.023 36.000 5.85 0.00 38.91 3.16
1766 5841 7.136119 CAGCGGTTAAAACTGATTTTCACTTA 58.864 34.615 5.85 0.00 38.91 2.24
1767 5842 7.323656 CAGCGGTTAAAACTGATTTTCACTTAG 59.676 37.037 5.85 0.00 38.91 2.18
1768 5843 7.012989 AGCGGTTAAAACTGATTTTCACTTAGT 59.987 33.333 5.85 0.00 38.91 2.24
1769 5844 7.112984 GCGGTTAAAACTGATTTTCACTTAGTG 59.887 37.037 5.94 5.94 38.91 2.74
1770 5845 7.589954 CGGTTAAAACTGATTTTCACTTAGTGG 59.410 37.037 12.79 0.00 38.91 4.00
1771 5846 8.410912 GGTTAAAACTGATTTTCACTTAGTGGT 58.589 33.333 12.79 0.00 38.91 4.16
1772 5847 9.447040 GTTAAAACTGATTTTCACTTAGTGGTC 57.553 33.333 12.79 6.75 38.91 4.02
1773 5848 7.639113 AAAACTGATTTTCACTTAGTGGTCA 57.361 32.000 12.79 10.49 32.29 4.02
1774 5849 7.823745 AAACTGATTTTCACTTAGTGGTCAT 57.176 32.000 12.79 1.96 33.87 3.06
1775 5850 7.823745 AACTGATTTTCACTTAGTGGTCATT 57.176 32.000 12.79 4.31 33.87 2.57
1776 5851 7.823745 ACTGATTTTCACTTAGTGGTCATTT 57.176 32.000 12.79 1.08 33.87 2.32
1777 5852 8.237811 ACTGATTTTCACTTAGTGGTCATTTT 57.762 30.769 12.79 0.00 33.87 1.82
1786 5861 5.654650 ACTTAGTGGTCATTTTTGTTGTCCA 59.345 36.000 0.00 0.00 31.26 4.02
1792 5867 5.559694 GTCATTTTTGTTGTCCAATGACG 57.440 39.130 7.84 0.00 43.27 4.35
1793 5868 4.444056 GTCATTTTTGTTGTCCAATGACGG 59.556 41.667 7.84 0.00 43.27 4.79
1794 5869 3.444703 TTTTTGTTGTCCAATGACGGG 57.555 42.857 0.00 0.00 44.86 5.28
1795 5870 0.671251 TTTGTTGTCCAATGACGGGC 59.329 50.000 0.00 0.00 44.86 6.13
1796 5871 1.511318 TTGTTGTCCAATGACGGGCG 61.511 55.000 0.00 0.00 44.86 6.13
1797 5872 2.359354 TTGTCCAATGACGGGCGG 60.359 61.111 0.00 0.00 44.86 6.13
1798 5873 3.910914 TTGTCCAATGACGGGCGGG 62.911 63.158 0.00 0.00 44.86 6.13
1802 5877 4.776322 CAATGACGGGCGGGCTCA 62.776 66.667 0.26 0.00 0.00 4.26
1803 5878 4.778143 AATGACGGGCGGGCTCAC 62.778 66.667 0.26 0.00 0.00 3.51
1825 5900 2.906897 CACGCTGGTTGGCTGGTT 60.907 61.111 0.00 0.00 0.00 3.67
1826 5901 2.123897 ACGCTGGTTGGCTGGTTT 60.124 55.556 0.00 0.00 0.00 3.27
1827 5902 1.149627 ACGCTGGTTGGCTGGTTTA 59.850 52.632 0.00 0.00 0.00 2.01
1828 5903 1.170290 ACGCTGGTTGGCTGGTTTAC 61.170 55.000 0.00 0.00 0.00 2.01
1829 5904 1.862602 CGCTGGTTGGCTGGTTTACC 61.863 60.000 0.00 0.00 0.00 2.85
1830 5905 1.532604 GCTGGTTGGCTGGTTTACCC 61.533 60.000 0.00 0.00 34.29 3.69
1831 5906 1.228306 TGGTTGGCTGGTTTACCCG 60.228 57.895 0.00 0.00 35.15 5.28
1832 5907 1.228337 GGTTGGCTGGTTTACCCGT 60.228 57.895 0.00 0.00 35.15 5.28
1833 5908 0.824595 GGTTGGCTGGTTTACCCGTT 60.825 55.000 0.00 0.00 35.15 4.44
1834 5909 1.034356 GTTGGCTGGTTTACCCGTTT 58.966 50.000 0.00 0.00 35.15 3.60
1835 5910 1.409790 GTTGGCTGGTTTACCCGTTTT 59.590 47.619 0.00 0.00 35.15 2.43
1836 5911 1.033574 TGGCTGGTTTACCCGTTTTG 58.966 50.000 0.00 0.00 35.15 2.44
1837 5912 1.320507 GGCTGGTTTACCCGTTTTGA 58.679 50.000 0.00 0.00 35.15 2.69
1838 5913 1.268625 GGCTGGTTTACCCGTTTTGAG 59.731 52.381 0.00 0.00 35.15 3.02
1839 5914 1.268625 GCTGGTTTACCCGTTTTGAGG 59.731 52.381 0.00 0.00 35.15 3.86
1840 5915 2.578786 CTGGTTTACCCGTTTTGAGGT 58.421 47.619 0.00 0.00 40.31 3.85
1841 5916 2.292292 CTGGTTTACCCGTTTTGAGGTG 59.708 50.000 0.00 0.00 36.88 4.00
1842 5917 1.001048 GGTTTACCCGTTTTGAGGTGC 60.001 52.381 0.00 0.00 36.88 5.01
1843 5918 1.677052 GTTTACCCGTTTTGAGGTGCA 59.323 47.619 0.00 0.00 36.88 4.57
1844 5919 2.054232 TTACCCGTTTTGAGGTGCAA 57.946 45.000 0.00 0.00 36.88 4.08
1845 5920 1.310904 TACCCGTTTTGAGGTGCAAC 58.689 50.000 0.00 0.00 36.88 4.17
1846 5921 0.395173 ACCCGTTTTGAGGTGCAACT 60.395 50.000 2.34 2.34 35.91 3.16
1847 5922 0.030638 CCCGTTTTGAGGTGCAACTG 59.969 55.000 10.28 0.00 35.91 3.16
1848 5923 0.030638 CCGTTTTGAGGTGCAACTGG 59.969 55.000 10.28 0.00 35.91 4.00
1849 5924 0.738389 CGTTTTGAGGTGCAACTGGT 59.262 50.000 10.28 0.00 35.91 4.00
1850 5925 1.134175 CGTTTTGAGGTGCAACTGGTT 59.866 47.619 10.28 0.00 35.91 3.67
1851 5926 2.416701 CGTTTTGAGGTGCAACTGGTTT 60.417 45.455 10.28 0.00 35.91 3.27
1852 5927 3.186909 GTTTTGAGGTGCAACTGGTTTC 58.813 45.455 10.28 0.00 35.91 2.78
1853 5928 2.136298 TTGAGGTGCAACTGGTTTCA 57.864 45.000 10.28 0.00 36.74 2.69
1854 5929 1.388547 TGAGGTGCAACTGGTTTCAC 58.611 50.000 10.28 7.51 36.74 3.18
1855 5930 0.668535 GAGGTGCAACTGGTTTCACC 59.331 55.000 21.48 21.48 46.93 4.02
1856 5931 1.739667 GGTGCAACTGGTTTCACCC 59.260 57.895 19.40 6.53 42.25 4.61
1857 5932 1.040339 GGTGCAACTGGTTTCACCCA 61.040 55.000 19.40 0.00 42.25 4.51
1858 5933 0.820871 GTGCAACTGGTTTCACCCAA 59.179 50.000 5.24 0.00 37.50 4.12
1859 5934 0.820871 TGCAACTGGTTTCACCCAAC 59.179 50.000 0.00 0.00 37.50 3.77
1860 5935 0.104120 GCAACTGGTTTCACCCAACC 59.896 55.000 0.00 0.00 45.88 3.77
1864 5939 4.599036 GGTTTCACCCAACCAGCT 57.401 55.556 0.00 0.00 45.12 4.24
1865 5940 2.341452 GGTTTCACCCAACCAGCTC 58.659 57.895 0.00 0.00 45.12 4.09
1866 5941 1.179174 GGTTTCACCCAACCAGCTCC 61.179 60.000 0.00 0.00 45.12 4.70
1867 5942 1.228124 TTTCACCCAACCAGCTCCG 60.228 57.895 0.00 0.00 0.00 4.63
1868 5943 3.842925 TTCACCCAACCAGCTCCGC 62.843 63.158 0.00 0.00 0.00 5.54
1886 5961 4.256090 GCGCCCGCATCCAATCAC 62.256 66.667 7.91 0.00 41.49 3.06
1887 5962 3.585990 CGCCCGCATCCAATCACC 61.586 66.667 0.00 0.00 0.00 4.02
1953 6029 4.083643 TGTTACTATCTATCTACGCGCCAC 60.084 45.833 5.73 0.00 0.00 5.01
1965 6041 0.109689 CGCGCCACGGGAAATAAAAA 60.110 50.000 0.00 0.00 42.31 1.94
2125 6557 1.985159 TGTAGCCATTGTGGTCTCCTT 59.015 47.619 0.00 0.00 40.46 3.36
2286 7896 4.021925 GGCAGAGCCCGTGTCCTT 62.022 66.667 0.00 0.00 44.06 3.36
2298 7908 0.031178 GTGTCCTTGTCGGTACACGT 59.969 55.000 0.00 0.00 44.69 4.49
2364 8924 2.338984 GTGCCTCGTCGGTCTTGT 59.661 61.111 0.00 0.00 34.25 3.16
2365 8925 1.300697 GTGCCTCGTCGGTCTTGTT 60.301 57.895 0.00 0.00 34.25 2.83
2395 8956 4.040095 GGAGTAGTTGGTGTTGGAGTAACT 59.960 45.833 0.00 0.00 40.05 2.24
2408 8969 1.373748 GTAACTTGGGTCGCGCTCA 60.374 57.895 5.56 0.00 0.00 4.26
2506 9075 1.506277 CGGCGTCAGCGTAAAAACG 60.506 57.895 0.00 0.00 46.35 3.60
2514 9087 4.573116 CGTAAAAACGCACACGCA 57.427 50.000 0.00 0.00 45.53 5.24
2525 9098 2.171079 CACACGCACTCACGTTGGT 61.171 57.895 0.00 0.00 45.75 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.878439 ACTACTCAACTGCGTTTACATGA 58.122 39.130 0.00 0.00 0.00 3.07
1 2 5.176774 TGAACTACTCAACTGCGTTTACATG 59.823 40.000 0.00 0.00 0.00 3.21
2 3 5.294356 TGAACTACTCAACTGCGTTTACAT 58.706 37.500 0.00 0.00 0.00 2.29
3 4 4.684877 TGAACTACTCAACTGCGTTTACA 58.315 39.130 0.00 0.00 0.00 2.41
4 5 5.389516 CCATGAACTACTCAACTGCGTTTAC 60.390 44.000 0.00 0.00 37.67 2.01
5 6 4.688879 CCATGAACTACTCAACTGCGTTTA 59.311 41.667 0.00 0.00 37.67 2.01
6 7 3.498397 CCATGAACTACTCAACTGCGTTT 59.502 43.478 0.00 0.00 37.67 3.60
7 8 3.067106 CCATGAACTACTCAACTGCGTT 58.933 45.455 0.00 0.00 37.67 4.84
8 9 2.037251 ACCATGAACTACTCAACTGCGT 59.963 45.455 0.00 0.00 37.67 5.24
9 10 2.688507 ACCATGAACTACTCAACTGCG 58.311 47.619 0.00 0.00 37.67 5.18
10 11 6.371548 TGAATTACCATGAACTACTCAACTGC 59.628 38.462 0.00 0.00 37.67 4.40
11 12 7.905604 TGAATTACCATGAACTACTCAACTG 57.094 36.000 0.00 0.00 37.67 3.16
12 13 7.554118 CCATGAATTACCATGAACTACTCAACT 59.446 37.037 8.35 0.00 44.98 3.16
13 14 7.552687 TCCATGAATTACCATGAACTACTCAAC 59.447 37.037 8.35 0.00 44.98 3.18
14 15 7.629157 TCCATGAATTACCATGAACTACTCAA 58.371 34.615 8.35 0.00 44.98 3.02
15 16 7.194112 TCCATGAATTACCATGAACTACTCA 57.806 36.000 8.35 0.00 44.98 3.41
16 17 8.398665 GTTTCCATGAATTACCATGAACTACTC 58.601 37.037 8.35 0.00 44.98 2.59
17 18 7.888021 TGTTTCCATGAATTACCATGAACTACT 59.112 33.333 8.35 0.00 44.98 2.57
18 19 8.050778 TGTTTCCATGAATTACCATGAACTAC 57.949 34.615 8.35 3.22 44.98 2.73
19 20 8.106462 TCTGTTTCCATGAATTACCATGAACTA 58.894 33.333 8.35 0.00 44.98 2.24
20 21 6.947733 TCTGTTTCCATGAATTACCATGAACT 59.052 34.615 8.35 0.00 44.98 3.01
21 22 7.156876 TCTGTTTCCATGAATTACCATGAAC 57.843 36.000 8.35 6.69 44.98 3.18
22 23 7.232330 TGTTCTGTTTCCATGAATTACCATGAA 59.768 33.333 8.35 0.46 44.98 2.57
23 24 6.718912 TGTTCTGTTTCCATGAATTACCATGA 59.281 34.615 8.35 0.00 44.98 3.07
24 25 6.923012 TGTTCTGTTTCCATGAATTACCATG 58.077 36.000 0.00 0.00 42.58 3.66
25 26 6.350445 GCTGTTCTGTTTCCATGAATTACCAT 60.350 38.462 0.00 0.00 0.00 3.55
26 27 5.048083 GCTGTTCTGTTTCCATGAATTACCA 60.048 40.000 0.00 0.00 0.00 3.25
27 28 5.183904 AGCTGTTCTGTTTCCATGAATTACC 59.816 40.000 0.00 0.00 0.00 2.85
28 29 6.072508 TCAGCTGTTCTGTTTCCATGAATTAC 60.073 38.462 14.67 0.00 43.32 1.89
29 30 6.003326 TCAGCTGTTCTGTTTCCATGAATTA 58.997 36.000 14.67 0.00 43.32 1.40
30 31 4.828939 TCAGCTGTTCTGTTTCCATGAATT 59.171 37.500 14.67 0.00 43.32 2.17
31 32 4.401022 TCAGCTGTTCTGTTTCCATGAAT 58.599 39.130 14.67 0.00 43.32 2.57
32 33 3.819368 TCAGCTGTTCTGTTTCCATGAA 58.181 40.909 14.67 0.00 43.32 2.57
33 34 3.490439 TCAGCTGTTCTGTTTCCATGA 57.510 42.857 14.67 0.00 43.32 3.07
34 35 3.119602 CCATCAGCTGTTCTGTTTCCATG 60.120 47.826 14.67 5.70 43.32 3.66
35 36 3.087031 CCATCAGCTGTTCTGTTTCCAT 58.913 45.455 14.67 0.00 43.32 3.41
36 37 2.106338 TCCATCAGCTGTTCTGTTTCCA 59.894 45.455 14.67 0.00 43.32 3.53
37 38 2.485814 GTCCATCAGCTGTTCTGTTTCC 59.514 50.000 14.67 0.00 43.32 3.13
38 39 2.158449 CGTCCATCAGCTGTTCTGTTTC 59.842 50.000 14.67 2.82 43.32 2.78
39 40 2.146342 CGTCCATCAGCTGTTCTGTTT 58.854 47.619 14.67 0.00 43.32 2.83
40 41 1.800805 CGTCCATCAGCTGTTCTGTT 58.199 50.000 14.67 0.00 43.32 3.16
41 42 0.671781 GCGTCCATCAGCTGTTCTGT 60.672 55.000 14.67 0.00 43.32 3.41
42 43 0.671472 TGCGTCCATCAGCTGTTCTG 60.671 55.000 14.67 9.85 44.21 3.02
43 44 0.251354 ATGCGTCCATCAGCTGTTCT 59.749 50.000 14.67 0.00 0.00 3.01
44 45 0.376152 CATGCGTCCATCAGCTGTTC 59.624 55.000 14.67 0.41 0.00 3.18
45 46 0.036105 TCATGCGTCCATCAGCTGTT 60.036 50.000 14.67 1.65 0.00 3.16
46 47 0.179702 ATCATGCGTCCATCAGCTGT 59.820 50.000 14.67 0.00 0.00 4.40
47 48 0.866427 GATCATGCGTCCATCAGCTG 59.134 55.000 7.63 7.63 0.00 4.24
48 49 0.466963 TGATCATGCGTCCATCAGCT 59.533 50.000 0.00 0.00 0.00 4.24
49 50 1.263484 CTTGATCATGCGTCCATCAGC 59.737 52.381 0.00 0.00 0.00 4.26
50 51 2.543012 GTCTTGATCATGCGTCCATCAG 59.457 50.000 0.00 0.00 0.00 2.90
51 52 2.093553 TGTCTTGATCATGCGTCCATCA 60.094 45.455 0.00 0.00 0.00 3.07
52 53 2.554142 TGTCTTGATCATGCGTCCATC 58.446 47.619 0.00 0.00 0.00 3.51
53 54 2.696989 TGTCTTGATCATGCGTCCAT 57.303 45.000 0.00 0.00 0.00 3.41
54 55 2.470983 TTGTCTTGATCATGCGTCCA 57.529 45.000 0.00 0.00 0.00 4.02
55 56 2.744202 AGTTTGTCTTGATCATGCGTCC 59.256 45.455 0.00 0.00 0.00 4.79
56 57 5.530519 TTAGTTTGTCTTGATCATGCGTC 57.469 39.130 0.00 0.00 0.00 5.19
57 58 6.500684 AATTAGTTTGTCTTGATCATGCGT 57.499 33.333 0.00 0.00 0.00 5.24
58 59 5.674148 CGAATTAGTTTGTCTTGATCATGCG 59.326 40.000 0.00 0.00 0.00 4.73
59 60 6.775088 TCGAATTAGTTTGTCTTGATCATGC 58.225 36.000 0.00 0.00 0.00 4.06
60 61 7.907045 CCTTCGAATTAGTTTGTCTTGATCATG 59.093 37.037 0.00 0.00 0.00 3.07
61 62 7.824289 TCCTTCGAATTAGTTTGTCTTGATCAT 59.176 33.333 0.00 0.00 0.00 2.45
62 63 7.158697 TCCTTCGAATTAGTTTGTCTTGATCA 58.841 34.615 0.00 0.00 0.00 2.92
63 64 7.596749 TCCTTCGAATTAGTTTGTCTTGATC 57.403 36.000 0.00 0.00 0.00 2.92
64 65 6.092807 GCTCCTTCGAATTAGTTTGTCTTGAT 59.907 38.462 0.00 0.00 0.00 2.57
65 66 5.408604 GCTCCTTCGAATTAGTTTGTCTTGA 59.591 40.000 0.00 0.00 0.00 3.02
66 67 5.179368 TGCTCCTTCGAATTAGTTTGTCTTG 59.821 40.000 0.00 0.00 0.00 3.02
67 68 5.305585 TGCTCCTTCGAATTAGTTTGTCTT 58.694 37.500 0.00 0.00 0.00 3.01
68 69 4.894784 TGCTCCTTCGAATTAGTTTGTCT 58.105 39.130 0.00 0.00 0.00 3.41
69 70 4.929808 TCTGCTCCTTCGAATTAGTTTGTC 59.070 41.667 0.00 0.00 0.00 3.18
70 71 4.894784 TCTGCTCCTTCGAATTAGTTTGT 58.105 39.130 0.00 0.00 0.00 2.83
71 72 5.862924 TTCTGCTCCTTCGAATTAGTTTG 57.137 39.130 0.00 0.00 0.00 2.93
72 73 5.107065 CGTTTCTGCTCCTTCGAATTAGTTT 60.107 40.000 0.00 0.00 0.00 2.66
73 74 4.389077 CGTTTCTGCTCCTTCGAATTAGTT 59.611 41.667 0.00 0.00 0.00 2.24
74 75 3.927142 CGTTTCTGCTCCTTCGAATTAGT 59.073 43.478 0.00 0.00 0.00 2.24
75 76 4.174009 TCGTTTCTGCTCCTTCGAATTAG 58.826 43.478 0.00 0.00 0.00 1.73
76 77 4.182693 TCGTTTCTGCTCCTTCGAATTA 57.817 40.909 0.00 0.00 0.00 1.40
77 78 3.040147 TCGTTTCTGCTCCTTCGAATT 57.960 42.857 0.00 0.00 0.00 2.17
78 79 2.743636 TCGTTTCTGCTCCTTCGAAT 57.256 45.000 0.00 0.00 0.00 3.34
79 80 2.743636 ATCGTTTCTGCTCCTTCGAA 57.256 45.000 0.00 0.00 0.00 3.71
80 81 3.380320 TCATATCGTTTCTGCTCCTTCGA 59.620 43.478 0.00 0.00 0.00 3.71
81 82 3.487574 GTCATATCGTTTCTGCTCCTTCG 59.512 47.826 0.00 0.00 0.00 3.79
82 83 4.433615 TGTCATATCGTTTCTGCTCCTTC 58.566 43.478 0.00 0.00 0.00 3.46
83 84 4.437239 CTGTCATATCGTTTCTGCTCCTT 58.563 43.478 0.00 0.00 0.00 3.36
84 85 3.181471 CCTGTCATATCGTTTCTGCTCCT 60.181 47.826 0.00 0.00 0.00 3.69
85 86 3.126831 CCTGTCATATCGTTTCTGCTCC 58.873 50.000 0.00 0.00 0.00 4.70
86 87 4.046938 TCCTGTCATATCGTTTCTGCTC 57.953 45.455 0.00 0.00 0.00 4.26
87 88 3.701542 TCTCCTGTCATATCGTTTCTGCT 59.298 43.478 0.00 0.00 0.00 4.24
88 89 4.046938 TCTCCTGTCATATCGTTTCTGC 57.953 45.455 0.00 0.00 0.00 4.26
89 90 6.276091 TGATTCTCCTGTCATATCGTTTCTG 58.724 40.000 0.00 0.00 0.00 3.02
90 91 6.471233 TGATTCTCCTGTCATATCGTTTCT 57.529 37.500 0.00 0.00 0.00 2.52
91 92 7.721286 ATTGATTCTCCTGTCATATCGTTTC 57.279 36.000 0.00 0.00 0.00 2.78
92 93 8.400947 CAAATTGATTCTCCTGTCATATCGTTT 58.599 33.333 0.00 0.00 0.00 3.60
93 94 7.770433 TCAAATTGATTCTCCTGTCATATCGTT 59.230 33.333 0.00 0.00 0.00 3.85
94 95 7.275183 TCAAATTGATTCTCCTGTCATATCGT 58.725 34.615 0.00 0.00 0.00 3.73
95 96 7.719778 TCAAATTGATTCTCCTGTCATATCG 57.280 36.000 0.00 0.00 0.00 2.92
96 97 8.021973 GCATCAAATTGATTCTCCTGTCATATC 58.978 37.037 5.63 0.00 34.28 1.63
97 98 7.724506 AGCATCAAATTGATTCTCCTGTCATAT 59.275 33.333 5.63 0.00 34.28 1.78
98 99 7.012989 CAGCATCAAATTGATTCTCCTGTCATA 59.987 37.037 5.63 0.00 34.28 2.15
99 100 5.892119 AGCATCAAATTGATTCTCCTGTCAT 59.108 36.000 5.63 0.00 34.28 3.06
100 101 5.124936 CAGCATCAAATTGATTCTCCTGTCA 59.875 40.000 5.63 0.00 34.28 3.58
101 102 5.356190 TCAGCATCAAATTGATTCTCCTGTC 59.644 40.000 5.63 0.00 34.28 3.51
102 103 5.258841 TCAGCATCAAATTGATTCTCCTGT 58.741 37.500 5.63 0.00 34.28 4.00
103 104 5.830000 TCAGCATCAAATTGATTCTCCTG 57.170 39.130 5.63 10.13 34.28 3.86
104 105 6.845758 TTTCAGCATCAAATTGATTCTCCT 57.154 33.333 5.63 0.00 34.28 3.69
105 106 7.894376 TTTTTCAGCATCAAATTGATTCTCC 57.106 32.000 5.63 0.00 34.28 3.71
126 127 4.663334 GTCCCCTTACACTCCTGATTTTT 58.337 43.478 0.00 0.00 0.00 1.94
127 128 3.307480 CGTCCCCTTACACTCCTGATTTT 60.307 47.826 0.00 0.00 0.00 1.82
128 129 2.236395 CGTCCCCTTACACTCCTGATTT 59.764 50.000 0.00 0.00 0.00 2.17
129 130 1.831736 CGTCCCCTTACACTCCTGATT 59.168 52.381 0.00 0.00 0.00 2.57
130 131 1.006758 TCGTCCCCTTACACTCCTGAT 59.993 52.381 0.00 0.00 0.00 2.90
131 132 0.406750 TCGTCCCCTTACACTCCTGA 59.593 55.000 0.00 0.00 0.00 3.86
132 133 1.204941 CTTCGTCCCCTTACACTCCTG 59.795 57.143 0.00 0.00 0.00 3.86
133 134 1.558233 CTTCGTCCCCTTACACTCCT 58.442 55.000 0.00 0.00 0.00 3.69
134 135 0.108281 GCTTCGTCCCCTTACACTCC 60.108 60.000 0.00 0.00 0.00 3.85
135 136 0.458025 CGCTTCGTCCCCTTACACTC 60.458 60.000 0.00 0.00 0.00 3.51
136 137 0.896940 TCGCTTCGTCCCCTTACACT 60.897 55.000 0.00 0.00 0.00 3.55
137 138 0.458025 CTCGCTTCGTCCCCTTACAC 60.458 60.000 0.00 0.00 0.00 2.90
138 139 1.888018 CTCGCTTCGTCCCCTTACA 59.112 57.895 0.00 0.00 0.00 2.41
139 140 1.518792 GCTCGCTTCGTCCCCTTAC 60.519 63.158 0.00 0.00 0.00 2.34
140 141 2.718073 GGCTCGCTTCGTCCCCTTA 61.718 63.158 0.00 0.00 0.00 2.69
141 142 4.083862 GGCTCGCTTCGTCCCCTT 62.084 66.667 0.00 0.00 0.00 3.95
147 148 3.329688 CTCTGACGGCTCGCTTCGT 62.330 63.158 0.00 0.00 42.67 3.85
148 149 2.578178 CTCTGACGGCTCGCTTCG 60.578 66.667 0.00 0.00 0.00 3.79
149 150 1.226547 CTCTCTGACGGCTCGCTTC 60.227 63.158 0.00 0.00 0.00 3.86
150 151 1.928706 GACTCTCTGACGGCTCGCTT 61.929 60.000 0.00 0.00 0.00 4.68
151 152 2.360600 ACTCTCTGACGGCTCGCT 60.361 61.111 0.00 0.00 0.00 4.93
152 153 2.101380 GACTCTCTGACGGCTCGC 59.899 66.667 0.00 0.00 0.00 5.03
153 154 1.135731 GTGACTCTCTGACGGCTCG 59.864 63.158 0.00 0.00 0.00 5.03
154 155 0.450184 GAGTGACTCTCTGACGGCTC 59.550 60.000 5.12 0.00 39.86 4.70
155 156 2.562125 GAGTGACTCTCTGACGGCT 58.438 57.895 5.12 0.00 39.86 5.52
163 164 3.494626 CAGCGATCTCTAGAGTGACTCTC 59.505 52.174 19.83 2.70 40.34 3.20
164 165 3.133901 TCAGCGATCTCTAGAGTGACTCT 59.866 47.826 20.12 20.12 43.83 3.24
165 166 3.247648 GTCAGCGATCTCTAGAGTGACTC 59.752 52.174 23.40 3.98 32.01 3.36
166 167 3.202906 GTCAGCGATCTCTAGAGTGACT 58.797 50.000 23.40 13.97 32.01 3.41
167 168 2.033236 CGTCAGCGATCTCTAGAGTGAC 60.033 54.545 21.87 21.87 41.33 3.67
168 169 2.205911 CGTCAGCGATCTCTAGAGTGA 58.794 52.381 19.21 12.12 41.33 3.41
169 170 1.262950 CCGTCAGCGATCTCTAGAGTG 59.737 57.143 19.21 9.98 41.33 3.51
170 171 1.134340 ACCGTCAGCGATCTCTAGAGT 60.134 52.381 19.21 7.07 41.33 3.24
171 172 1.262950 CACCGTCAGCGATCTCTAGAG 59.737 57.143 13.98 13.98 41.33 2.43
172 173 1.134491 TCACCGTCAGCGATCTCTAGA 60.134 52.381 0.00 0.00 41.33 2.43
173 174 1.262950 CTCACCGTCAGCGATCTCTAG 59.737 57.143 0.00 0.00 41.33 2.43
174 175 1.300481 CTCACCGTCAGCGATCTCTA 58.700 55.000 0.00 0.00 41.33 2.43
175 176 1.999071 GCTCACCGTCAGCGATCTCT 61.999 60.000 0.00 0.00 41.33 3.10
176 177 1.587613 GCTCACCGTCAGCGATCTC 60.588 63.158 0.00 0.00 41.33 2.75
177 178 2.276863 CTGCTCACCGTCAGCGATCT 62.277 60.000 0.00 0.00 40.01 2.75
178 179 1.875813 CTGCTCACCGTCAGCGATC 60.876 63.158 0.00 0.00 40.01 3.69
179 180 2.182791 CTGCTCACCGTCAGCGAT 59.817 61.111 0.00 0.00 40.01 4.58
180 181 3.295273 ACTGCTCACCGTCAGCGA 61.295 61.111 0.00 0.00 40.01 4.93
181 182 3.108289 CACTGCTCACCGTCAGCG 61.108 66.667 0.00 0.00 40.01 5.18
182 183 2.740055 CCACTGCTCACCGTCAGC 60.740 66.667 0.00 0.00 37.40 4.26
183 184 2.047844 CCCACTGCTCACCGTCAG 60.048 66.667 0.00 0.00 36.45 3.51
184 185 3.625897 CCCCACTGCTCACCGTCA 61.626 66.667 0.00 0.00 0.00 4.35
188 189 3.009115 TAGGCCCCACTGCTCACC 61.009 66.667 0.00 0.00 0.00 4.02
189 190 2.124507 TTGTAGGCCCCACTGCTCAC 62.125 60.000 0.00 0.00 0.00 3.51
190 191 1.845664 TTGTAGGCCCCACTGCTCA 60.846 57.895 0.00 0.00 0.00 4.26
191 192 1.377333 GTTGTAGGCCCCACTGCTC 60.377 63.158 0.00 0.00 0.00 4.26
192 193 2.757077 GTTGTAGGCCCCACTGCT 59.243 61.111 0.00 0.00 0.00 4.24
193 194 2.361230 GGTTGTAGGCCCCACTGC 60.361 66.667 0.00 0.00 0.00 4.40
213 214 0.247736 GAGGAGACCACAAGATGCGT 59.752 55.000 0.00 0.00 0.00 5.24
215 216 0.107459 GGGAGGAGACCACAAGATGC 60.107 60.000 0.00 0.00 0.00 3.91
247 248 1.004277 CATCCTTTTCCCTCCGACCAA 59.996 52.381 0.00 0.00 0.00 3.67
251 252 2.170607 GACATCATCCTTTTCCCTCCGA 59.829 50.000 0.00 0.00 0.00 4.55
260 261 1.407437 GGACCAGCGACATCATCCTTT 60.407 52.381 0.00 0.00 0.00 3.11
265 266 2.501128 CCGGACCAGCGACATCAT 59.499 61.111 0.00 0.00 0.00 2.45
287 288 2.274104 GCGGCCATTACTCCCCAA 59.726 61.111 2.24 0.00 0.00 4.12
290 291 4.547367 AGCGCGGCCATTACTCCC 62.547 66.667 8.83 0.00 0.00 4.30
339 340 2.097038 CCTCTTGTCAAGCCGAGCG 61.097 63.158 7.78 0.00 0.00 5.03
341 342 1.078848 CCCCTCTTGTCAAGCCGAG 60.079 63.158 7.78 0.81 0.00 4.63
342 343 3.068881 CCCCTCTTGTCAAGCCGA 58.931 61.111 7.78 0.00 0.00 5.54
343 344 2.747855 GCCCCTCTTGTCAAGCCG 60.748 66.667 7.78 1.66 0.00 5.52
344 345 1.228552 TTGCCCCTCTTGTCAAGCC 60.229 57.895 7.78 0.00 0.00 4.35
346 347 1.072965 AGACTTGCCCCTCTTGTCAAG 59.927 52.381 6.21 6.21 41.07 3.02
348 349 1.140312 AAGACTTGCCCCTCTTGTCA 58.860 50.000 0.00 0.00 0.00 3.58
391 407 0.533491 TTCGACCATTACCGTGGGAG 59.467 55.000 0.00 0.00 43.77 4.30
396 412 0.390735 GGCAGTTCGACCATTACCGT 60.391 55.000 0.00 0.00 0.00 4.83
398 414 1.369625 CTGGCAGTTCGACCATTACC 58.630 55.000 6.28 0.00 34.82 2.85
447 463 2.005451 CATTAGTCTGTGGCTCTGTGC 58.995 52.381 0.00 0.00 41.94 4.57
448 464 2.005451 GCATTAGTCTGTGGCTCTGTG 58.995 52.381 0.00 0.00 0.00 3.66
449 465 1.065854 GGCATTAGTCTGTGGCTCTGT 60.066 52.381 6.43 0.00 37.85 3.41
450 466 1.065926 TGGCATTAGTCTGTGGCTCTG 60.066 52.381 12.64 0.00 41.07 3.35
451 467 1.065854 GTGGCATTAGTCTGTGGCTCT 60.066 52.381 12.64 0.00 41.07 4.09
452 468 1.373570 GTGGCATTAGTCTGTGGCTC 58.626 55.000 12.64 7.28 41.07 4.70
453 469 0.391661 CGTGGCATTAGTCTGTGGCT 60.392 55.000 12.64 0.00 41.07 4.75
454 470 1.982073 GCGTGGCATTAGTCTGTGGC 61.982 60.000 0.00 6.66 40.89 5.01
486 502 1.078143 GGTGGAAGGCGAGCTCAAT 60.078 57.895 15.40 0.00 0.00 2.57
546 568 4.260784 GCCGACTTAATTCAGTAATGCTGG 60.261 45.833 0.00 0.00 45.08 4.85
635 661 1.004628 ACTGGATGCATGCACCAACTA 59.995 47.619 29.45 17.36 33.14 2.24
725 4072 5.287035 CCAGTTCTTCGCAATGATAAAAAGC 59.713 40.000 0.00 0.00 0.00 3.51
754 4105 2.655364 CATGAGGAGTACGCCGCG 60.655 66.667 12.14 12.14 0.00 6.46
862 4216 4.149571 CACTTGAACTCACTGTCGAATGAG 59.850 45.833 16.93 16.93 46.49 2.90
869 4223 2.826428 TCTGCACTTGAACTCACTGTC 58.174 47.619 0.00 0.00 0.00 3.51
915 4968 2.092267 TGATGCCCACATGTAGAAGCAT 60.092 45.455 18.47 18.47 43.25 3.79
1031 5084 3.509575 GGTCTTATTTGGGAATGTGTGCA 59.490 43.478 0.00 0.00 0.00 4.57
1256 5314 0.600255 CAGCCGACGGACTGTCTTTT 60.600 55.000 20.50 0.00 45.87 2.27
1258 5316 1.461091 TTCAGCCGACGGACTGTCTT 61.461 55.000 26.61 0.00 45.87 3.01
1319 5377 2.202878 GCGATGCCCTTGTAGCGA 60.203 61.111 0.00 0.00 38.29 4.93
1398 5456 3.190849 CGGCATGGTGAGACTGCG 61.191 66.667 0.00 0.00 36.76 5.18
1435 5498 9.116067 CCTAGATGCTTATAGGTAGTACATCTC 57.884 40.741 11.26 0.00 41.24 2.75
1464 5533 5.288015 CAGATGTAGATGTAGAGCAACCAG 58.712 45.833 0.00 0.00 0.00 4.00
1465 5534 4.442052 GCAGATGTAGATGTAGAGCAACCA 60.442 45.833 0.00 0.00 0.00 3.67
1500 5569 4.586001 CCTCCACTTATTTAGCCATGCATT 59.414 41.667 0.00 0.00 0.00 3.56
1560 5629 9.295825 AGATAATCACACTTCCAATAACACAAA 57.704 29.630 0.00 0.00 0.00 2.83
1571 5640 9.771534 AGAGCTTAATAAGATAATCACACTTCC 57.228 33.333 3.88 0.00 0.00 3.46
1636 5711 5.951747 TGAGTTGGCTAGCCTCATTATTTTT 59.048 36.000 33.07 8.92 36.94 1.94
1637 5712 5.358160 GTGAGTTGGCTAGCCTCATTATTTT 59.642 40.000 33.07 9.58 37.54 1.82
1639 5714 4.455606 GTGAGTTGGCTAGCCTCATTATT 58.544 43.478 33.07 12.46 37.54 1.40
1640 5715 3.181450 GGTGAGTTGGCTAGCCTCATTAT 60.181 47.826 33.07 13.89 37.54 1.28
1641 5716 2.170607 GGTGAGTTGGCTAGCCTCATTA 59.829 50.000 33.07 11.19 37.54 1.90
1642 5717 1.065126 GGTGAGTTGGCTAGCCTCATT 60.065 52.381 33.07 17.20 37.54 2.57
1644 5719 0.545309 AGGTGAGTTGGCTAGCCTCA 60.545 55.000 33.07 25.03 36.94 3.86
1645 5720 0.176910 GAGGTGAGTTGGCTAGCCTC 59.823 60.000 33.07 24.48 38.02 4.70
1646 5721 1.268283 GGAGGTGAGTTGGCTAGCCT 61.268 60.000 33.07 14.87 36.94 4.58
1648 5723 0.107945 CTGGAGGTGAGTTGGCTAGC 60.108 60.000 6.04 6.04 0.00 3.42
1649 5724 1.561643 TCTGGAGGTGAGTTGGCTAG 58.438 55.000 0.00 0.00 0.00 3.42
1650 5725 1.902508 CTTCTGGAGGTGAGTTGGCTA 59.097 52.381 0.00 0.00 0.00 3.93
1651 5726 0.689623 CTTCTGGAGGTGAGTTGGCT 59.310 55.000 0.00 0.00 0.00 4.75
1652 5727 0.322008 CCTTCTGGAGGTGAGTTGGC 60.322 60.000 0.00 0.00 40.95 4.52
1653 5728 3.944476 CCTTCTGGAGGTGAGTTGG 57.056 57.895 0.00 0.00 40.95 3.77
1662 5737 3.474570 CGGGGGAGCCTTCTGGAG 61.475 72.222 0.00 0.00 34.57 3.86
1663 5738 2.840203 AATCGGGGGAGCCTTCTGGA 62.840 60.000 0.00 0.00 34.57 3.86
1664 5739 2.378634 AATCGGGGGAGCCTTCTGG 61.379 63.158 0.00 0.00 0.00 3.86
1665 5740 1.153086 CAATCGGGGGAGCCTTCTG 60.153 63.158 0.00 0.00 0.00 3.02
1666 5741 2.378634 CCAATCGGGGGAGCCTTCT 61.379 63.158 0.00 0.00 0.00 2.85
1667 5742 2.193248 CCAATCGGGGGAGCCTTC 59.807 66.667 0.00 0.00 0.00 3.46
1679 5754 2.394604 GGCTAACGAGTGCCCAATC 58.605 57.895 0.00 0.00 43.11 2.67
1680 5755 4.637771 GGCTAACGAGTGCCCAAT 57.362 55.556 0.00 0.00 43.11 3.16
1690 5765 4.147204 AGAGCAGATCTGACGGCTAACG 62.147 54.545 27.04 0.00 40.87 3.18
1691 5766 1.407258 AGAGCAGATCTGACGGCTAAC 59.593 52.381 27.04 5.77 40.87 2.34
1692 5767 1.769026 AGAGCAGATCTGACGGCTAA 58.231 50.000 27.04 0.00 40.87 3.09
1693 5768 1.678627 GAAGAGCAGATCTGACGGCTA 59.321 52.381 27.04 0.00 40.87 3.93
1694 5769 0.459489 GAAGAGCAGATCTGACGGCT 59.541 55.000 27.04 15.84 43.14 5.52
1695 5770 0.174389 TGAAGAGCAGATCTGACGGC 59.826 55.000 27.04 10.85 38.67 5.68
1696 5771 2.538437 CTTGAAGAGCAGATCTGACGG 58.462 52.381 27.04 0.00 38.67 4.79
1708 5783 1.784062 CTTGGACGCGCTTGAAGAG 59.216 57.895 5.73 0.00 0.00 2.85
1709 5784 2.317609 GCTTGGACGCGCTTGAAGA 61.318 57.895 5.73 0.00 0.00 2.87
1710 5785 2.174349 GCTTGGACGCGCTTGAAG 59.826 61.111 5.73 4.61 0.00 3.02
1711 5786 3.353836 GGCTTGGACGCGCTTGAA 61.354 61.111 5.73 0.00 0.00 2.69
1731 5806 1.271856 TTAACCGCTGTGGAGATCCA 58.728 50.000 15.34 0.00 45.30 3.41
1732 5807 2.396590 TTTAACCGCTGTGGAGATCC 57.603 50.000 15.34 0.00 42.00 3.36
1733 5808 3.125316 CAGTTTTAACCGCTGTGGAGATC 59.875 47.826 15.34 0.00 42.00 2.75
1734 5809 3.074412 CAGTTTTAACCGCTGTGGAGAT 58.926 45.455 15.34 2.35 42.00 2.75
1735 5810 2.103432 TCAGTTTTAACCGCTGTGGAGA 59.897 45.455 15.34 0.00 42.00 3.71
1736 5811 2.489971 TCAGTTTTAACCGCTGTGGAG 58.510 47.619 15.34 0.00 42.00 3.86
1737 5812 2.623878 TCAGTTTTAACCGCTGTGGA 57.376 45.000 15.34 0.00 42.00 4.02
1738 5813 3.915437 AATCAGTTTTAACCGCTGTGG 57.085 42.857 5.54 5.54 46.41 4.17
1739 5814 5.173131 GTGAAAATCAGTTTTAACCGCTGTG 59.827 40.000 0.00 0.00 37.65 3.66
1740 5815 5.067283 AGTGAAAATCAGTTTTAACCGCTGT 59.933 36.000 0.00 0.00 38.82 4.40
1741 5816 5.519722 AGTGAAAATCAGTTTTAACCGCTG 58.480 37.500 0.00 0.00 38.82 5.18
1742 5817 5.767816 AGTGAAAATCAGTTTTAACCGCT 57.232 34.783 0.00 0.00 38.82 5.52
1743 5818 7.112984 CACTAAGTGAAAATCAGTTTTAACCGC 59.887 37.037 5.81 0.00 38.82 5.68
1744 5819 7.589954 CCACTAAGTGAAAATCAGTTTTAACCG 59.410 37.037 5.81 0.00 38.82 4.44
1745 5820 8.410912 ACCACTAAGTGAAAATCAGTTTTAACC 58.589 33.333 5.81 0.00 38.82 2.85
1746 5821 9.447040 GACCACTAAGTGAAAATCAGTTTTAAC 57.553 33.333 5.81 0.00 40.28 2.01
1747 5822 9.179909 TGACCACTAAGTGAAAATCAGTTTTAA 57.820 29.630 5.81 0.00 40.28 1.52
1748 5823 8.740123 TGACCACTAAGTGAAAATCAGTTTTA 57.260 30.769 5.81 0.00 40.28 1.52
1749 5824 7.639113 TGACCACTAAGTGAAAATCAGTTTT 57.361 32.000 5.81 0.00 40.28 2.43
1750 5825 7.823745 ATGACCACTAAGTGAAAATCAGTTT 57.176 32.000 5.81 0.00 40.28 2.66
1751 5826 7.823745 AATGACCACTAAGTGAAAATCAGTT 57.176 32.000 5.80 5.80 42.26 3.16
1752 5827 7.823745 AAATGACCACTAAGTGAAAATCAGT 57.176 32.000 0.00 0.00 35.23 3.41
1753 5828 8.971321 CAAAAATGACCACTAAGTGAAAATCAG 58.029 33.333 0.00 0.00 35.23 2.90
1754 5829 8.474025 ACAAAAATGACCACTAAGTGAAAATCA 58.526 29.630 0.00 0.00 35.23 2.57
1755 5830 8.871686 ACAAAAATGACCACTAAGTGAAAATC 57.128 30.769 0.00 0.00 35.23 2.17
1756 5831 9.097257 CAACAAAAATGACCACTAAGTGAAAAT 57.903 29.630 0.00 0.00 35.23 1.82
1757 5832 8.091449 ACAACAAAAATGACCACTAAGTGAAAA 58.909 29.630 0.00 0.00 35.23 2.29
1758 5833 7.607250 ACAACAAAAATGACCACTAAGTGAAA 58.393 30.769 0.00 0.00 35.23 2.69
1759 5834 7.164230 ACAACAAAAATGACCACTAAGTGAA 57.836 32.000 0.00 0.00 35.23 3.18
1760 5835 6.183360 GGACAACAAAAATGACCACTAAGTGA 60.183 38.462 0.00 0.00 35.23 3.41
1761 5836 5.977129 GGACAACAAAAATGACCACTAAGTG 59.023 40.000 0.00 0.00 33.60 3.16
1762 5837 5.654650 TGGACAACAAAAATGACCACTAAGT 59.345 36.000 0.00 0.00 37.63 2.24
1763 5838 6.142818 TGGACAACAAAAATGACCACTAAG 57.857 37.500 0.00 0.00 37.63 2.18
1764 5839 6.531503 TTGGACAACAAAAATGACCACTAA 57.468 33.333 0.00 0.00 41.21 2.24
1765 5840 6.322456 TCATTGGACAACAAAAATGACCACTA 59.678 34.615 0.00 0.00 43.46 2.74
1766 5841 5.128499 TCATTGGACAACAAAAATGACCACT 59.872 36.000 0.00 0.00 43.46 4.00
1767 5842 5.234116 GTCATTGGACAACAAAAATGACCAC 59.766 40.000 13.74 0.00 46.83 4.16
1768 5843 5.355596 GTCATTGGACAACAAAAATGACCA 58.644 37.500 13.74 0.00 46.83 4.02
1769 5844 5.905480 GTCATTGGACAACAAAAATGACC 57.095 39.130 13.74 0.00 46.83 4.02
1771 5846 4.500545 CCCGTCATTGGACAACAAAAATGA 60.501 41.667 0.00 0.00 44.54 2.57
1772 5847 3.740321 CCCGTCATTGGACAACAAAAATG 59.260 43.478 0.00 0.00 44.54 2.32
1773 5848 3.801983 GCCCGTCATTGGACAACAAAAAT 60.802 43.478 0.00 0.00 44.54 1.82
1774 5849 2.482142 GCCCGTCATTGGACAACAAAAA 60.482 45.455 0.00 0.00 44.54 1.94
1775 5850 1.067821 GCCCGTCATTGGACAACAAAA 59.932 47.619 0.00 0.00 44.54 2.44
1776 5851 0.671251 GCCCGTCATTGGACAACAAA 59.329 50.000 0.00 0.00 44.54 2.83
1777 5852 1.511318 CGCCCGTCATTGGACAACAA 61.511 55.000 0.00 0.00 44.54 2.83
1786 5861 4.778143 GTGAGCCCGCCCGTCATT 62.778 66.667 0.00 0.00 0.00 2.57
1808 5883 1.169661 TAAACCAGCCAACCAGCGTG 61.170 55.000 0.00 0.00 38.01 5.34
1809 5884 1.149627 TAAACCAGCCAACCAGCGT 59.850 52.632 0.00 0.00 38.01 5.07
1810 5885 1.579429 GTAAACCAGCCAACCAGCG 59.421 57.895 0.00 0.00 38.01 5.18
1811 5886 1.532604 GGGTAAACCAGCCAACCAGC 61.533 60.000 0.81 0.00 44.80 4.85
1812 5887 1.241315 CGGGTAAACCAGCCAACCAG 61.241 60.000 0.81 0.00 45.82 4.00
1813 5888 1.228306 CGGGTAAACCAGCCAACCA 60.228 57.895 0.81 0.00 45.82 3.67
1814 5889 0.824595 AACGGGTAAACCAGCCAACC 60.825 55.000 0.81 0.00 45.82 3.77
1815 5890 1.034356 AAACGGGTAAACCAGCCAAC 58.966 50.000 0.81 0.00 45.82 3.77
1816 5891 1.409427 CAAAACGGGTAAACCAGCCAA 59.591 47.619 0.81 0.00 45.82 4.52
1817 5892 1.033574 CAAAACGGGTAAACCAGCCA 58.966 50.000 0.81 0.00 45.82 4.75
1818 5893 1.268625 CTCAAAACGGGTAAACCAGCC 59.731 52.381 0.81 0.00 41.77 4.85
1819 5894 1.268625 CCTCAAAACGGGTAAACCAGC 59.731 52.381 0.81 0.00 40.22 4.85
1820 5895 2.292292 CACCTCAAAACGGGTAAACCAG 59.708 50.000 0.81 0.00 40.22 4.00
1821 5896 2.299521 CACCTCAAAACGGGTAAACCA 58.700 47.619 0.81 0.00 40.22 3.67
1822 5897 1.001048 GCACCTCAAAACGGGTAAACC 60.001 52.381 0.00 0.00 34.07 3.27
1823 5898 1.677052 TGCACCTCAAAACGGGTAAAC 59.323 47.619 0.00 0.00 34.07 2.01
1824 5899 2.054232 TGCACCTCAAAACGGGTAAA 57.946 45.000 0.00 0.00 34.07 2.01
1825 5900 1.677052 GTTGCACCTCAAAACGGGTAA 59.323 47.619 0.00 0.00 36.26 2.85
1826 5901 1.134037 AGTTGCACCTCAAAACGGGTA 60.134 47.619 0.00 0.00 36.26 3.69
1827 5902 0.395173 AGTTGCACCTCAAAACGGGT 60.395 50.000 0.00 0.00 36.26 5.28
1828 5903 0.030638 CAGTTGCACCTCAAAACGGG 59.969 55.000 0.00 0.00 36.26 5.28
1829 5904 0.030638 CCAGTTGCACCTCAAAACGG 59.969 55.000 0.00 0.00 36.26 4.44
1830 5905 0.738389 ACCAGTTGCACCTCAAAACG 59.262 50.000 0.00 0.00 36.26 3.60
1831 5906 2.959507 AACCAGTTGCACCTCAAAAC 57.040 45.000 0.00 0.00 36.26 2.43
1832 5907 2.828520 TGAAACCAGTTGCACCTCAAAA 59.171 40.909 0.00 0.00 36.26 2.44
1833 5908 2.165437 GTGAAACCAGTTGCACCTCAAA 59.835 45.455 10.11 0.00 42.07 2.69
1834 5909 1.748493 GTGAAACCAGTTGCACCTCAA 59.252 47.619 10.11 0.00 42.07 3.02
1835 5910 1.388547 GTGAAACCAGTTGCACCTCA 58.611 50.000 10.11 0.00 42.07 3.86
1848 5923 1.515521 CGGAGCTGGTTGGGTGAAAC 61.516 60.000 0.00 0.00 0.00 2.78
1849 5924 1.228124 CGGAGCTGGTTGGGTGAAA 60.228 57.895 0.00 0.00 0.00 2.69
1850 5925 2.429930 CGGAGCTGGTTGGGTGAA 59.570 61.111 0.00 0.00 0.00 3.18
1869 5944 4.256090 GTGATTGGATGCGGGCGC 62.256 66.667 0.00 0.00 42.35 6.53
1870 5945 3.585990 GGTGATTGGATGCGGGCG 61.586 66.667 0.00 0.00 0.00 6.13
1871 5946 3.219198 GGGTGATTGGATGCGGGC 61.219 66.667 0.00 0.00 0.00 6.13
1872 5947 1.825191 CAGGGTGATTGGATGCGGG 60.825 63.158 0.00 0.00 0.00 6.13
1873 5948 0.680921 AACAGGGTGATTGGATGCGG 60.681 55.000 0.00 0.00 0.00 5.69
1874 5949 1.135315 CAAACAGGGTGATTGGATGCG 60.135 52.381 0.00 0.00 0.00 4.73
1875 5950 2.094545 GTCAAACAGGGTGATTGGATGC 60.095 50.000 0.00 0.00 31.99 3.91
1876 5951 3.057315 GTGTCAAACAGGGTGATTGGATG 60.057 47.826 0.00 0.00 31.99 3.51
1877 5952 3.157087 GTGTCAAACAGGGTGATTGGAT 58.843 45.455 0.00 0.00 31.99 3.41
1878 5953 2.582052 GTGTCAAACAGGGTGATTGGA 58.418 47.619 0.00 0.00 31.99 3.53
1879 5954 1.266718 CGTGTCAAACAGGGTGATTGG 59.733 52.381 0.00 0.00 31.99 3.16
1880 5955 2.217750 TCGTGTCAAACAGGGTGATTG 58.782 47.619 0.52 0.00 34.95 2.67
1881 5956 2.631160 TCGTGTCAAACAGGGTGATT 57.369 45.000 0.52 0.00 34.95 2.57
1882 5957 2.631160 TTCGTGTCAAACAGGGTGAT 57.369 45.000 0.52 0.00 34.95 3.06
1883 5958 2.404923 TTTCGTGTCAAACAGGGTGA 57.595 45.000 0.52 0.00 34.95 4.02
1884 5959 3.495670 TTTTTCGTGTCAAACAGGGTG 57.504 42.857 0.52 0.00 34.95 4.61
1885 5960 5.838531 TTATTTTTCGTGTCAAACAGGGT 57.161 34.783 0.52 0.00 34.95 4.34
1886 5961 7.863375 TGTTATTATTTTTCGTGTCAAACAGGG 59.137 33.333 0.52 0.00 34.95 4.45
1887 5962 8.789881 TGTTATTATTTTTCGTGTCAAACAGG 57.210 30.769 0.00 0.00 35.48 4.00
1941 6017 2.306255 ATTTCCCGTGGCGCGTAGAT 62.306 55.000 20.01 5.07 39.32 1.98
1965 6041 4.054825 CTGGCACGCCCGCAATTT 62.055 61.111 5.42 0.00 35.87 1.82
2053 6253 5.479306 GAGCGCATATGTAAAGGGATCTTA 58.521 41.667 11.47 0.00 32.01 2.10
2142 6574 2.224233 GGAGTAATTAACCGGGAGCCTC 60.224 54.545 6.32 1.23 0.00 4.70
2364 8924 0.470766 ACCAACTACTCCAACGCCAA 59.529 50.000 0.00 0.00 0.00 4.52
2365 8925 0.250124 CACCAACTACTCCAACGCCA 60.250 55.000 0.00 0.00 0.00 5.69
2395 8956 2.835701 CTAAGCTGAGCGCGACCCAA 62.836 60.000 12.10 0.00 45.59 4.12
2408 8969 2.424557 TGTCGTCGAGAAGTCTAAGCT 58.575 47.619 0.00 0.00 0.00 3.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.