Multiple sequence alignment - TraesCS2B01G460300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G460300 chr2B 100.000 3279 0 0 1 3279 654373015 654376293 0.000000e+00 6056
1 TraesCS2B01G460300 chr2B 89.744 741 69 3 1 741 600083185 600083918 0.000000e+00 941
2 TraesCS2B01G460300 chr2B 88.679 742 75 5 1 741 356438585 356439318 0.000000e+00 896
3 TraesCS2B01G460300 chr2B 85.952 541 58 10 1637 2173 654529354 654529880 2.210000e-156 562
4 TraesCS2B01G460300 chr2B 86.061 330 46 0 1843 2172 654718316 654718645 4.020000e-94 355
5 TraesCS2B01G460300 chr2B 85.843 332 43 3 1843 2172 654646239 654646568 1.870000e-92 350
6 TraesCS2B01G460300 chr2B 85.843 332 43 3 1843 2172 654667429 654667758 1.870000e-92 350
7 TraesCS2B01G460300 chr2B 85.542 332 44 3 1843 2172 654696299 654696628 8.710000e-91 344
8 TraesCS2B01G460300 chr2B 84.940 332 46 3 1843 2172 654677516 654677845 1.890000e-87 333
9 TraesCS2B01G460300 chr2B 88.043 184 20 2 1657 1839 654644251 654644433 1.980000e-52 217
10 TraesCS2B01G460300 chr2B 88.043 184 20 2 1657 1839 654665536 654665718 1.980000e-52 217
11 TraesCS2B01G460300 chr2B 88.043 184 20 2 1657 1839 654675533 654675715 1.980000e-52 217
12 TraesCS2B01G460300 chr2B 88.043 184 20 2 1657 1839 654694319 654694501 1.980000e-52 217
13 TraesCS2B01G460300 chr2B 86.911 191 23 2 1650 1839 654716297 654716486 2.560000e-51 213
14 TraesCS2B01G460300 chr2B 80.505 277 35 10 3019 3279 654439280 654439553 9.280000e-46 195
15 TraesCS2B01G460300 chr2B 78.027 223 32 9 2761 2973 654420463 654420678 1.240000e-24 124
16 TraesCS2B01G460300 chr3A 94.489 744 35 2 1 744 81460952 81460215 0.000000e+00 1142
17 TraesCS2B01G460300 chr6D 94.355 744 36 2 1 744 458983429 458982692 0.000000e+00 1136
18 TraesCS2B01G460300 chr7D 92.038 741 53 1 1 741 607535080 607535814 0.000000e+00 1037
19 TraesCS2B01G460300 chr3D 91.801 744 55 1 1 744 121543112 121542375 0.000000e+00 1031
20 TraesCS2B01G460300 chr3B 91.509 742 56 2 1 741 820093738 820094473 0.000000e+00 1014
21 TraesCS2B01G460300 chr5B 89.204 741 74 1 1 741 390733990 390734724 0.000000e+00 920
22 TraesCS2B01G460300 chr2A 88.411 768 53 18 1430 2194 691173920 691173186 0.000000e+00 893
23 TraesCS2B01G460300 chr2A 88.951 715 35 16 745 1431 691174801 691174103 0.000000e+00 843
24 TraesCS2B01G460300 chr2A 92.327 391 22 6 2589 2971 691172563 691172173 1.720000e-152 549
25 TraesCS2B01G460300 chr2A 85.185 540 62 10 1637 2173 691143330 691142806 3.720000e-149 538
26 TraesCS2B01G460300 chr2A 90.404 396 19 4 2195 2589 691173148 691172771 1.360000e-138 503
27 TraesCS2B01G460300 chr2A 91.961 311 16 5 2978 3279 691172214 691171904 8.410000e-116 427
28 TraesCS2B01G460300 chr2A 86.364 396 43 8 1637 2026 691121620 691121230 3.910000e-114 422
29 TraesCS2B01G460300 chr2A 77.429 669 111 25 2287 2943 691118315 691117675 2.400000e-96 363
30 TraesCS2B01G460300 chr2A 78.177 362 60 13 2287 2646 691136821 691136477 2.560000e-51 213
31 TraesCS2B01G460300 chr2A 81.550 271 36 9 3020 3278 691161399 691161131 9.220000e-51 211
32 TraesCS2B01G460300 chr2A 74.880 418 60 23 2594 2973 691171193 691170783 7.330000e-32 148
33 TraesCS2B01G460300 chr6A 87.415 739 87 4 1 739 23254751 23255483 0.000000e+00 845
34 TraesCS2B01G460300 chr2D 89.950 597 27 8 836 1431 547771231 547771795 0.000000e+00 739
35 TraesCS2B01G460300 chr2D 90.351 570 43 6 1637 2194 547772130 547772699 0.000000e+00 737
36 TraesCS2B01G460300 chr2D 79.925 802 99 31 2195 2969 547772737 547773503 1.730000e-147 532
37 TraesCS2B01G460300 chr2D 75.615 1017 174 51 2287 3272 547804197 547805170 1.400000e-118 436
38 TraesCS2B01G460300 chr2D 75.113 442 83 19 2359 2796 547881836 547882254 7.230000e-42 182
39 TraesCS2B01G460300 chr2D 86.061 165 16 4 1444 1607 547771969 547772127 1.560000e-38 171
40 TraesCS2B01G460300 chr2D 94.382 89 5 0 745 833 547771112 547771200 1.590000e-28 137
41 TraesCS2B01G460300 chr2D 75.984 254 42 11 2359 2610 547882765 547883001 2.670000e-21 113


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G460300 chr2B 654373015 654376293 3278 False 6056.0 6056 100.000000 1 3279 1 chr2B.!!$F3 3278
1 TraesCS2B01G460300 chr2B 600083185 600083918 733 False 941.0 941 89.744000 1 741 1 chr2B.!!$F2 740
2 TraesCS2B01G460300 chr2B 356438585 356439318 733 False 896.0 896 88.679000 1 741 1 chr2B.!!$F1 740
3 TraesCS2B01G460300 chr2B 654529354 654529880 526 False 562.0 562 85.952000 1637 2173 1 chr2B.!!$F6 536
4 TraesCS2B01G460300 chr2B 654716297 654718645 2348 False 284.0 355 86.486000 1650 2172 2 chr2B.!!$F11 522
5 TraesCS2B01G460300 chr2B 654644251 654646568 2317 False 283.5 350 86.943000 1657 2172 2 chr2B.!!$F7 515
6 TraesCS2B01G460300 chr2B 654665536 654667758 2222 False 283.5 350 86.943000 1657 2172 2 chr2B.!!$F8 515
7 TraesCS2B01G460300 chr2B 654694319 654696628 2309 False 280.5 344 86.792500 1657 2172 2 chr2B.!!$F10 515
8 TraesCS2B01G460300 chr2B 654675533 654677845 2312 False 275.0 333 86.491500 1657 2172 2 chr2B.!!$F9 515
9 TraesCS2B01G460300 chr3A 81460215 81460952 737 True 1142.0 1142 94.489000 1 744 1 chr3A.!!$R1 743
10 TraesCS2B01G460300 chr6D 458982692 458983429 737 True 1136.0 1136 94.355000 1 744 1 chr6D.!!$R1 743
11 TraesCS2B01G460300 chr7D 607535080 607535814 734 False 1037.0 1037 92.038000 1 741 1 chr7D.!!$F1 740
12 TraesCS2B01G460300 chr3D 121542375 121543112 737 True 1031.0 1031 91.801000 1 744 1 chr3D.!!$R1 743
13 TraesCS2B01G460300 chr3B 820093738 820094473 735 False 1014.0 1014 91.509000 1 741 1 chr3B.!!$F1 740
14 TraesCS2B01G460300 chr5B 390733990 390734724 734 False 920.0 920 89.204000 1 741 1 chr5B.!!$F1 740
15 TraesCS2B01G460300 chr2A 691170783 691174801 4018 True 560.5 893 87.822333 745 3279 6 chr2A.!!$R5 2534
16 TraesCS2B01G460300 chr2A 691142806 691143330 524 True 538.0 538 85.185000 1637 2173 1 chr2A.!!$R2 536
17 TraesCS2B01G460300 chr2A 691117675 691121620 3945 True 392.5 422 81.896500 1637 2943 2 chr2A.!!$R4 1306
18 TraesCS2B01G460300 chr6A 23254751 23255483 732 False 845.0 845 87.415000 1 739 1 chr6A.!!$F1 738
19 TraesCS2B01G460300 chr2D 547771112 547773503 2391 False 463.2 739 88.133800 745 2969 5 chr2D.!!$F2 2224
20 TraesCS2B01G460300 chr2D 547804197 547805170 973 False 436.0 436 75.615000 2287 3272 1 chr2D.!!$F1 985

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
51 52 0.324614 TGCCAGCTCCAGAAATTCGA 59.675 50.0 0.00 0.0 0.00 3.71 F
580 581 0.486879 TTCCCCACCAGCATTTCCTT 59.513 50.0 0.00 0.0 0.00 3.36 F
1924 3984 0.595053 GCTGCTGAGCTACGCGAATA 60.595 55.0 15.93 0.0 42.52 1.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2048 6680 0.179012 GGGTGGGTTCGTTTTGGAGA 60.179 55.0 0.00 0.0 0.00 3.71 R
2056 6688 1.412453 TACTTGCTGGGTGGGTTCGT 61.412 55.0 0.00 0.0 0.00 3.85 R
2971 7954 0.169009 GTTTAAGCTCCTGCGCCTTG 59.831 55.0 4.18 0.0 45.42 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 3.054139 TCATAGTGCCAGCTCCAGAAATT 60.054 43.478 0.00 0.00 0.00 1.82
51 52 0.324614 TGCCAGCTCCAGAAATTCGA 59.675 50.000 0.00 0.00 0.00 3.71
105 106 2.686816 CCCGAACGTCCATTGGCAC 61.687 63.158 0.00 0.00 0.00 5.01
433 434 0.674581 CAGGGAATTGCAGCAGACGA 60.675 55.000 0.00 0.00 0.00 4.20
526 527 5.698741 TGGATTGTGTCATAGTCTTCCAT 57.301 39.130 0.00 0.00 0.00 3.41
572 573 2.369394 CATCTTTACTTCCCCACCAGC 58.631 52.381 0.00 0.00 0.00 4.85
580 581 0.486879 TTCCCCACCAGCATTTCCTT 59.513 50.000 0.00 0.00 0.00 3.36
628 629 1.408822 CCCCGAGGAAGCTTAAAGCAT 60.409 52.381 0.00 0.00 38.68 3.79
662 664 3.434319 GGACCGCATGTGCCTGTG 61.434 66.667 0.00 0.00 37.91 3.66
663 665 4.107051 GACCGCATGTGCCTGTGC 62.107 66.667 0.00 0.00 37.91 4.57
666 668 4.111016 CGCATGTGCCTGTGCCAG 62.111 66.667 0.00 0.00 38.08 4.85
672 674 1.375268 GTGCCTGTGCCAGAGACTC 60.375 63.158 4.00 0.00 36.33 3.36
703 705 3.008330 CTCCTTTCCTGCTGAAGACATG 58.992 50.000 0.00 0.00 33.63 3.21
741 743 3.578282 CCTTGAACTTTGGCCCATAAACT 59.422 43.478 0.00 0.00 0.00 2.66
755 757 6.152831 GGCCCATAAACTATGACAAAAAGAGT 59.847 38.462 0.00 0.00 38.45 3.24
790 792 1.227823 TCTCCGTTGGTGGCAACTG 60.228 57.895 3.27 0.00 33.21 3.16
969 1000 0.603569 GCAAGACTTCTCTCGGTCCA 59.396 55.000 0.00 0.00 33.39 4.02
970 1001 1.403514 GCAAGACTTCTCTCGGTCCAG 60.404 57.143 0.00 0.00 33.39 3.86
971 1002 0.892063 AAGACTTCTCTCGGTCCAGC 59.108 55.000 0.00 0.00 33.39 4.85
972 1003 1.137825 GACTTCTCTCGGTCCAGCG 59.862 63.158 0.00 0.00 0.00 5.18
973 1004 1.303398 ACTTCTCTCGGTCCAGCGA 60.303 57.895 0.33 0.33 0.00 4.93
974 1005 1.137825 CTTCTCTCGGTCCAGCGAC 59.862 63.158 0.00 0.00 38.38 5.19
994 1025 1.075425 CTCTTGAGCGACCTTGAGCG 61.075 60.000 0.00 0.00 38.61 5.03
1121 1152 4.038804 CCCCTCCTCCCCCTTGGA 62.039 72.222 0.00 0.00 42.41 3.53
1246 1277 3.977427 TGATTCTCCCGTCATATCGTTG 58.023 45.455 0.00 0.00 0.00 4.10
1266 1297 2.030893 TGCTTGCTCCTTCGAATTTGTG 60.031 45.455 0.00 0.00 0.00 3.33
1267 1298 2.030805 GCTTGCTCCTTCGAATTTGTGT 60.031 45.455 0.00 0.00 0.00 3.72
1273 1304 3.468770 TCCTTCGAATTTGTGTTCCGAA 58.531 40.909 0.00 0.00 0.00 4.30
1290 1321 1.718757 GAACCATGCGTCCATCAGCC 61.719 60.000 0.00 0.00 0.00 4.85
1299 1330 1.523758 GTCCATCAGCCGTTCTGTTT 58.476 50.000 2.48 0.00 43.32 2.83
1300 1331 1.464997 GTCCATCAGCCGTTCTGTTTC 59.535 52.381 2.48 0.00 43.32 2.78
1310 1341 3.305335 GCCGTTCTGTTTCCATGAATTGT 60.305 43.478 0.00 0.00 0.00 2.71
1328 1359 7.307694 TGAATTGTCATGAACTACTCAATTGC 58.692 34.615 18.90 12.88 37.67 3.56
1435 1466 4.698575 GATGGTCTCATCTAACTTCACCC 58.301 47.826 0.00 0.00 44.73 4.61
1436 1467 3.516586 TGGTCTCATCTAACTTCACCCA 58.483 45.455 0.00 0.00 0.00 4.51
1437 1468 4.104086 TGGTCTCATCTAACTTCACCCAT 58.896 43.478 0.00 0.00 0.00 4.00
1438 1469 4.162320 TGGTCTCATCTAACTTCACCCATC 59.838 45.833 0.00 0.00 0.00 3.51
1439 1470 4.363999 GTCTCATCTAACTTCACCCATCG 58.636 47.826 0.00 0.00 0.00 3.84
1440 1471 4.023980 TCTCATCTAACTTCACCCATCGT 58.976 43.478 0.00 0.00 0.00 3.73
1441 1472 4.098044 TCTCATCTAACTTCACCCATCGTC 59.902 45.833 0.00 0.00 0.00 4.20
1442 1473 3.767131 TCATCTAACTTCACCCATCGTCA 59.233 43.478 0.00 0.00 0.00 4.35
1460 1676 2.813754 GTCACCAGCTTAACAGATTGCA 59.186 45.455 0.00 0.00 0.00 4.08
1461 1677 3.076621 TCACCAGCTTAACAGATTGCAG 58.923 45.455 0.00 0.00 0.00 4.41
1489 1705 3.904571 TGATGTTCTTGCTCATGTTTGC 58.095 40.909 0.00 0.00 0.00 3.68
1509 1725 3.314913 TGCTGTTTGCTTCATCTTCGAAA 59.685 39.130 0.00 0.00 43.37 3.46
1510 1726 3.665871 GCTGTTTGCTTCATCTTCGAAAC 59.334 43.478 0.00 0.00 38.95 2.78
1513 1729 4.097135 TGTTTGCTTCATCTTCGAAACCAA 59.903 37.500 0.00 0.00 0.00 3.67
1523 1739 9.834628 TTCATCTTCGAAACCAATGTTTAATAC 57.165 29.630 0.00 0.00 44.57 1.89
1524 1740 9.226606 TCATCTTCGAAACCAATGTTTAATACT 57.773 29.630 0.00 0.00 44.57 2.12
1554 1770 2.360475 GTCCACCAAGAGGCCAGC 60.360 66.667 5.01 0.00 39.06 4.85
1596 1813 3.627395 TTAATGTGGGGTGCTACTCTG 57.373 47.619 0.00 0.00 0.00 3.35
1603 1820 3.512724 GTGGGGTGCTACTCTGTTAGTTA 59.487 47.826 0.00 0.00 39.80 2.24
1607 1824 6.441284 TGGGGTGCTACTCTGTTAGTTATTAA 59.559 38.462 0.00 0.00 39.80 1.40
1608 1825 7.038160 TGGGGTGCTACTCTGTTAGTTATTAAA 60.038 37.037 0.00 0.00 39.80 1.52
1609 1826 7.825761 GGGGTGCTACTCTGTTAGTTATTAAAA 59.174 37.037 0.00 0.00 39.80 1.52
1610 1827 9.392259 GGGTGCTACTCTGTTAGTTATTAAAAT 57.608 33.333 0.00 0.00 39.80 1.82
1633 1850 9.500701 AAATATAAGATGTTTTTGTATGGGGGT 57.499 29.630 0.00 0.00 0.00 4.95
1642 1859 7.644062 TGTTTTTGTATGGGGGTAATATCTGA 58.356 34.615 0.00 0.00 0.00 3.27
1787 2005 7.343316 TGATTCTTCCCTTCCTTTTTGTTTACA 59.657 33.333 0.00 0.00 0.00 2.41
1789 2007 6.869695 TCTTCCCTTCCTTTTTGTTTACAAC 58.130 36.000 0.00 0.00 35.28 3.32
1885 3945 3.244215 CCTCAAACTCTAGTTGTGCAGGA 60.244 47.826 0.00 0.00 38.44 3.86
1924 3984 0.595053 GCTGCTGAGCTACGCGAATA 60.595 55.000 15.93 0.00 42.52 1.75
1932 3992 2.794910 GAGCTACGCGAATATGAAAGCA 59.205 45.455 15.93 0.00 0.00 3.91
1980 4040 3.974719 ACTGGAGCATGTCTTAGAGAGA 58.025 45.455 0.00 0.00 0.00 3.10
1991 4051 4.162509 TGTCTTAGAGAGAGGAGATCGTGA 59.837 45.833 0.00 0.00 34.31 4.35
2048 6680 1.617850 GCTCACCGAGGATCATCAGAT 59.382 52.381 8.28 0.00 37.13 2.90
2067 6699 0.179012 TCTCCAAAACGAACCCACCC 60.179 55.000 0.00 0.00 0.00 4.61
2124 6765 6.377996 TGTGTTTGATTATCCAAATCAGGAGG 59.622 38.462 1.18 0.00 41.90 4.30
2160 6801 3.066342 CCAGCATTCTAGCACAAATCCAG 59.934 47.826 0.00 0.00 36.85 3.86
2176 6830 7.228706 CACAAATCCAGTTACTAGTTCCTTTGT 59.771 37.037 0.00 5.77 34.46 2.83
2265 7024 6.072508 TGCATGTTTTCTAAAGATGGACAGAC 60.073 38.462 10.17 0.00 0.00 3.51
2423 7186 7.177184 TGGTCTAGTTTGTATGTACTCCACTA 58.823 38.462 0.00 0.00 0.00 2.74
2503 7269 4.194640 CAACTATGCAATGCACCTAGTCT 58.805 43.478 18.35 8.92 43.04 3.24
2610 7585 3.486383 TGTAAGAAACAAGAAGGCCCTG 58.514 45.455 0.00 0.00 34.29 4.45
2621 7596 3.048600 AGAAGGCCCTGCATATGAACTA 58.951 45.455 6.97 0.00 0.00 2.24
2633 7608 4.034510 GCATATGAACTAAGTGGTGTCAGC 59.965 45.833 6.97 0.00 0.00 4.26
2662 7637 8.892723 TCTTTCGCATAACATATGAAATCAAGT 58.107 29.630 10.38 0.00 0.00 3.16
2665 7640 7.984391 TCGCATAACATATGAAATCAAGTGTT 58.016 30.769 10.38 16.03 39.31 3.32
2667 7642 9.882996 CGCATAACATATGAAATCAAGTGTTAT 57.117 29.630 19.92 19.92 43.35 1.89
2708 7684 2.338984 GTCGCGGTCTTGTCCAGT 59.661 61.111 6.13 0.00 0.00 4.00
2721 7697 6.430451 GTCTTGTCCAGTTTGACATTTGTAG 58.570 40.000 0.00 0.00 44.27 2.74
2741 7717 5.934625 TGTAGAAGGCTGAGAGAAAATCAAC 59.065 40.000 0.00 0.00 0.00 3.18
2776 7752 7.307219 GCCGAATACGCTAGAATCAGTTTAATT 60.307 37.037 0.00 0.00 38.29 1.40
2795 7771 0.678950 TCTCACGGTGAATGCAGTGA 59.321 50.000 12.54 0.00 40.27 3.41
2871 7847 5.311265 TGCTCTTGTGATTCAGAGTTTCAT 58.689 37.500 4.05 0.00 0.00 2.57
2885 7861 6.316140 TCAGAGTTTCATACACATAATGGCAC 59.684 38.462 0.00 0.00 0.00 5.01
2904 7880 1.009675 CCTGCACGTTTCAGCACAC 60.010 57.895 8.64 0.00 36.62 3.82
2905 7881 1.009675 CTGCACGTTTCAGCACACC 60.010 57.895 2.09 0.00 36.62 4.16
2933 7909 2.866028 GACTTGCTCAAGGCGCAG 59.134 61.111 10.83 0.00 45.43 5.18
2985 7968 4.711949 CCACAAGGCGCAGGAGCT 62.712 66.667 10.83 0.00 39.10 4.09
2986 7969 2.670934 CACAAGGCGCAGGAGCTT 60.671 61.111 10.83 0.00 39.10 3.74
2987 7970 1.375908 CACAAGGCGCAGGAGCTTA 60.376 57.895 10.83 0.00 39.10 3.09
2988 7971 0.955428 CACAAGGCGCAGGAGCTTAA 60.955 55.000 10.83 0.00 39.10 1.85
2989 7972 0.250727 ACAAGGCGCAGGAGCTTAAA 60.251 50.000 10.83 0.00 39.10 1.52
2990 7973 0.169009 CAAGGCGCAGGAGCTTAAAC 59.831 55.000 10.83 0.00 39.10 2.01
2991 7974 1.298859 AAGGCGCAGGAGCTTAAACG 61.299 55.000 10.83 0.00 39.10 3.60
2992 7975 2.750888 GGCGCAGGAGCTTAAACGG 61.751 63.158 10.83 0.00 39.10 4.44
2993 7976 2.033194 GCGCAGGAGCTTAAACGGT 61.033 57.895 0.30 0.00 39.10 4.83
2994 7977 1.787847 CGCAGGAGCTTAAACGGTG 59.212 57.895 0.00 0.00 39.10 4.94
2995 7978 1.502190 GCAGGAGCTTAAACGGTGC 59.498 57.895 0.00 0.00 37.91 5.01
2996 7979 1.787847 CAGGAGCTTAAACGGTGCG 59.212 57.895 0.00 0.00 0.00 5.34
2997 7980 1.375523 AGGAGCTTAAACGGTGCGG 60.376 57.895 0.00 0.00 0.00 5.69
2998 7981 1.670083 GGAGCTTAAACGGTGCGGT 60.670 57.895 0.00 0.00 0.00 5.68
2999 7982 0.390209 GGAGCTTAAACGGTGCGGTA 60.390 55.000 0.00 0.00 0.00 4.02
3000 7983 0.717784 GAGCTTAAACGGTGCGGTAC 59.282 55.000 0.00 0.00 0.00 3.34
3001 7984 0.319405 AGCTTAAACGGTGCGGTACT 59.681 50.000 0.00 0.00 0.00 2.73
3002 7985 1.150827 GCTTAAACGGTGCGGTACTT 58.849 50.000 0.00 0.00 0.00 2.24
3003 7986 2.029110 AGCTTAAACGGTGCGGTACTTA 60.029 45.455 0.00 0.00 0.00 2.24
3004 7987 2.346545 GCTTAAACGGTGCGGTACTTAG 59.653 50.000 0.00 0.00 0.00 2.18
3005 7988 2.652941 TAAACGGTGCGGTACTTAGG 57.347 50.000 0.00 0.00 0.00 2.69
3006 7989 0.671472 AAACGGTGCGGTACTTAGGC 60.671 55.000 0.00 0.00 0.00 3.93
3007 7990 2.202837 CGGTGCGGTACTTAGGCC 60.203 66.667 0.00 0.00 0.00 5.19
3008 7991 2.718073 CGGTGCGGTACTTAGGCCT 61.718 63.158 11.78 11.78 0.00 5.19
3009 7992 1.600638 GGTGCGGTACTTAGGCCTT 59.399 57.895 12.58 0.00 0.00 4.35
3010 7993 0.461516 GGTGCGGTACTTAGGCCTTC 60.462 60.000 12.58 0.00 0.00 3.46
3011 7994 0.535797 GTGCGGTACTTAGGCCTTCT 59.464 55.000 12.58 0.00 0.00 2.85
3012 7995 1.066358 GTGCGGTACTTAGGCCTTCTT 60.066 52.381 12.58 0.00 0.00 2.52
3013 7996 1.066430 TGCGGTACTTAGGCCTTCTTG 60.066 52.381 12.58 0.98 0.00 3.02
3014 7997 1.742750 GCGGTACTTAGGCCTTCTTGG 60.743 57.143 12.58 0.00 39.35 3.61
3057 8040 4.178540 CAAAATGCACTAGGATGGCAAAG 58.821 43.478 0.00 0.00 41.43 2.77
3112 8096 1.647346 CAAAGGTTACCTCGCGCATA 58.353 50.000 8.75 0.00 30.89 3.14
3119 8103 0.808453 TACCTCGCGCATAAAGCCAC 60.808 55.000 8.75 0.00 41.38 5.01
3167 8158 5.069251 AGTCCTAGGAAGTATGTGGATTTCG 59.931 44.000 14.65 0.00 0.00 3.46
3172 8163 6.240549 AGGAAGTATGTGGATTTCGAAGAT 57.759 37.500 0.00 0.00 35.04 2.40
3174 8165 6.049149 GGAAGTATGTGGATTTCGAAGATGA 58.951 40.000 0.00 0.00 35.04 2.92
3175 8166 6.708054 GGAAGTATGTGGATTTCGAAGATGAT 59.292 38.462 0.00 0.00 35.04 2.45
3176 8167 7.307632 GGAAGTATGTGGATTTCGAAGATGATG 60.308 40.741 0.00 0.00 35.04 3.07
3205 8196 6.467723 ACAATTCTAACTAAGTGCAGAACG 57.532 37.500 0.00 0.00 30.28 3.95
3214 8205 2.526304 AGTGCAGAACGTGTGTACAT 57.474 45.000 17.71 4.65 33.36 2.29
3225 8216 5.871465 ACGTGTGTACATTGAATATGCAA 57.129 34.783 0.00 0.00 0.00 4.08
3255 8246 5.407387 TGAAAATGAACCTAGCAACGACTAC 59.593 40.000 0.00 0.00 0.00 2.73
3260 8251 0.733729 CCTAGCAACGACTACGCTCT 59.266 55.000 0.00 0.00 43.96 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 0.449388 CGAATTTCTGGAGCTGGCAC 59.551 55.000 0.00 0.00 0.00 5.01
48 49 3.435327 GCTGTGTACCATGAATGTTTCGA 59.565 43.478 0.00 0.00 0.00 3.71
51 52 2.487762 CCGCTGTGTACCATGAATGTTT 59.512 45.455 0.00 0.00 0.00 2.83
105 106 2.290641 CAGAGGGTGTCGGAAGTTTTTG 59.709 50.000 0.00 0.00 0.00 2.44
141 142 1.690893 AGCTCATAGATGCCACGTCAT 59.309 47.619 0.00 0.00 0.00 3.06
376 377 4.201950 CGCCTGCTGAAAAGCATTTACTAT 60.202 41.667 0.11 0.00 44.47 2.12
507 508 6.344500 GTCTCATGGAAGACTATGACACAAT 58.656 40.000 7.19 0.00 42.01 2.71
572 573 7.594015 GCATCTCAACATGCTTATAAGGAAATG 59.406 37.037 10.97 8.24 45.03 2.32
628 629 2.500229 GTCCCGGTTTTCTCAATGTCA 58.500 47.619 0.00 0.00 0.00 3.58
659 661 0.315251 CTTGTCGAGTCTCTGGCACA 59.685 55.000 0.00 0.00 0.00 4.57
660 662 0.315568 ACTTGTCGAGTCTCTGGCAC 59.684 55.000 0.00 0.00 31.20 5.01
661 663 1.905637 TACTTGTCGAGTCTCTGGCA 58.094 50.000 0.00 0.00 39.86 4.92
662 664 2.685897 AGATACTTGTCGAGTCTCTGGC 59.314 50.000 7.22 0.00 39.55 4.85
663 665 3.314080 GGAGATACTTGTCGAGTCTCTGG 59.686 52.174 11.84 0.00 40.68 3.86
664 666 4.196193 AGGAGATACTTGTCGAGTCTCTG 58.804 47.826 11.84 0.00 40.68 3.35
665 667 4.497291 AGGAGATACTTGTCGAGTCTCT 57.503 45.455 7.66 7.66 42.58 3.10
666 668 5.449451 GGAAAGGAGATACTTGTCGAGTCTC 60.449 48.000 0.00 0.00 39.86 3.36
672 674 3.118956 AGCAGGAAAGGAGATACTTGTCG 60.119 47.826 0.00 0.00 0.00 4.35
703 705 6.993079 AGTTCAAGGTTGGATTGAAAATACC 58.007 36.000 2.92 0.00 45.48 2.73
741 743 4.155280 GGCCGCTAAACTCTTTTTGTCATA 59.845 41.667 0.00 0.00 0.00 2.15
755 757 1.674322 GAGCTTGTGGGCCGCTAAA 60.674 57.895 19.39 4.05 33.47 1.85
790 792 1.369625 CTGGTAAACGATGTGGGCTC 58.630 55.000 0.00 0.00 0.00 4.70
969 1000 2.569134 GTCGCTCAAGAGGTCGCT 59.431 61.111 0.00 0.00 0.00 4.93
970 1001 2.493907 AAGGTCGCTCAAGAGGTCGC 62.494 60.000 0.00 0.00 0.00 5.19
971 1002 0.734253 CAAGGTCGCTCAAGAGGTCG 60.734 60.000 0.00 0.00 0.00 4.79
972 1003 0.603569 TCAAGGTCGCTCAAGAGGTC 59.396 55.000 0.00 0.00 0.00 3.85
973 1004 0.605589 CTCAAGGTCGCTCAAGAGGT 59.394 55.000 0.00 0.00 0.00 3.85
974 1005 0.739112 GCTCAAGGTCGCTCAAGAGG 60.739 60.000 0.00 0.00 0.00 3.69
975 1006 1.075425 CGCTCAAGGTCGCTCAAGAG 61.075 60.000 0.00 0.00 0.00 2.85
976 1007 1.080501 CGCTCAAGGTCGCTCAAGA 60.081 57.895 0.00 0.00 0.00 3.02
977 1008 2.734673 GCGCTCAAGGTCGCTCAAG 61.735 63.158 0.00 0.00 46.92 3.02
978 1009 2.738521 GCGCTCAAGGTCGCTCAA 60.739 61.111 0.00 0.00 46.92 3.02
994 1025 2.512515 GACACCCCGCATCTCTGC 60.513 66.667 0.00 0.00 45.31 4.26
1054 1085 3.745803 GTCGCCTCCTTCGACGGT 61.746 66.667 7.94 0.00 45.19 4.83
1104 1135 4.038804 TCCAAGGGGGAGGAGGGG 62.039 72.222 0.00 0.00 42.15 4.79
1121 1152 1.841302 TTCCTCCACCTGATGCGCTT 61.841 55.000 9.73 0.55 0.00 4.68
1211 1242 6.152661 ACGGGAGAATCAATTTTATGCTGAAA 59.847 34.615 0.00 0.00 36.25 2.69
1212 1243 5.652014 ACGGGAGAATCAATTTTATGCTGAA 59.348 36.000 0.00 0.00 36.25 3.02
1213 1244 5.192927 ACGGGAGAATCAATTTTATGCTGA 58.807 37.500 0.00 0.00 36.25 4.26
1220 1251 6.055588 ACGATATGACGGGAGAATCAATTTT 58.944 36.000 0.00 0.00 37.61 1.82
1246 1277 2.030805 ACACAAATTCGAAGGAGCAAGC 60.031 45.455 3.35 0.00 0.00 4.01
1266 1297 1.024579 ATGGACGCATGGTTCGGAAC 61.025 55.000 12.41 12.41 0.00 3.62
1267 1298 0.742990 GATGGACGCATGGTTCGGAA 60.743 55.000 0.00 0.00 0.00 4.30
1273 1304 2.124570 GGCTGATGGACGCATGGT 60.125 61.111 0.00 0.00 0.00 3.55
1310 1341 5.237815 AGAACGCAATTGAGTAGTTCATGA 58.762 37.500 24.47 0.00 42.39 3.07
1328 1359 4.269603 CAGCAAGATCCTTCATGTAGAACG 59.730 45.833 0.12 0.00 31.61 3.95
1431 1462 0.249120 TAAGCTGGTGACGATGGGTG 59.751 55.000 0.00 0.00 0.00 4.61
1433 1464 1.338674 TGTTAAGCTGGTGACGATGGG 60.339 52.381 0.00 0.00 0.00 4.00
1434 1465 2.002586 CTGTTAAGCTGGTGACGATGG 58.997 52.381 0.00 0.00 0.00 3.51
1435 1466 2.959516 TCTGTTAAGCTGGTGACGATG 58.040 47.619 0.00 0.00 0.00 3.84
1436 1467 3.895232 ATCTGTTAAGCTGGTGACGAT 57.105 42.857 0.00 0.00 0.00 3.73
1437 1468 3.325870 CAATCTGTTAAGCTGGTGACGA 58.674 45.455 0.00 0.00 0.00 4.20
1438 1469 2.159653 GCAATCTGTTAAGCTGGTGACG 60.160 50.000 0.00 0.00 0.00 4.35
1439 1470 2.813754 TGCAATCTGTTAAGCTGGTGAC 59.186 45.455 0.00 0.00 0.00 3.67
1440 1471 3.076621 CTGCAATCTGTTAAGCTGGTGA 58.923 45.455 0.00 0.00 0.00 4.02
1441 1472 3.076621 TCTGCAATCTGTTAAGCTGGTG 58.923 45.455 0.00 0.00 0.00 4.17
1442 1473 3.244700 ACTCTGCAATCTGTTAAGCTGGT 60.245 43.478 0.00 0.00 0.00 4.00
1460 1676 3.072944 GAGCAAGAACATCAGCAACTCT 58.927 45.455 0.00 0.00 0.00 3.24
1461 1677 2.810274 TGAGCAAGAACATCAGCAACTC 59.190 45.455 0.00 0.00 0.00 3.01
1477 1693 1.855513 GCAAACAGCAAACATGAGCA 58.144 45.000 0.00 0.00 44.79 4.26
1489 1705 4.222114 GGTTTCGAAGATGAAGCAAACAG 58.778 43.478 0.00 0.00 35.04 3.16
1523 1739 6.936279 TCTTGGTGGACTCTTTCATTAGTAG 58.064 40.000 0.00 0.00 0.00 2.57
1524 1740 6.070767 CCTCTTGGTGGACTCTTTCATTAGTA 60.071 42.308 0.00 0.00 0.00 1.82
1525 1741 5.280215 CCTCTTGGTGGACTCTTTCATTAGT 60.280 44.000 0.00 0.00 0.00 2.24
1607 1824 9.500701 ACCCCCATACAAAAACATCTTATATTT 57.499 29.630 0.00 0.00 0.00 1.40
1613 1830 9.143155 GATATTACCCCCATACAAAAACATCTT 57.857 33.333 0.00 0.00 0.00 2.40
1614 1831 8.511126 AGATATTACCCCCATACAAAAACATCT 58.489 33.333 0.00 0.00 0.00 2.90
1615 1832 8.576442 CAGATATTACCCCCATACAAAAACATC 58.424 37.037 0.00 0.00 0.00 3.06
1616 1833 8.285891 TCAGATATTACCCCCATACAAAAACAT 58.714 33.333 0.00 0.00 0.00 2.71
1617 1834 7.644062 TCAGATATTACCCCCATACAAAAACA 58.356 34.615 0.00 0.00 0.00 2.83
1618 1835 7.996644 TCTCAGATATTACCCCCATACAAAAAC 59.003 37.037 0.00 0.00 0.00 2.43
1619 1836 8.108378 TCTCAGATATTACCCCCATACAAAAA 57.892 34.615 0.00 0.00 0.00 1.94
1620 1837 7.699709 TCTCAGATATTACCCCCATACAAAA 57.300 36.000 0.00 0.00 0.00 2.44
1621 1838 7.515861 TCATCTCAGATATTACCCCCATACAAA 59.484 37.037 0.00 0.00 0.00 2.83
1622 1839 7.022496 TCATCTCAGATATTACCCCCATACAA 58.978 38.462 0.00 0.00 0.00 2.41
1623 1840 6.570680 TCATCTCAGATATTACCCCCATACA 58.429 40.000 0.00 0.00 0.00 2.29
1624 1841 7.400339 TCTTCATCTCAGATATTACCCCCATAC 59.600 40.741 0.00 0.00 0.00 2.39
1625 1842 7.400339 GTCTTCATCTCAGATATTACCCCCATA 59.600 40.741 0.00 0.00 0.00 2.74
1626 1843 6.214412 GTCTTCATCTCAGATATTACCCCCAT 59.786 42.308 0.00 0.00 0.00 4.00
1627 1844 5.544176 GTCTTCATCTCAGATATTACCCCCA 59.456 44.000 0.00 0.00 0.00 4.96
1628 1845 5.544176 TGTCTTCATCTCAGATATTACCCCC 59.456 44.000 0.00 0.00 0.00 5.40
1629 1846 6.672266 TGTCTTCATCTCAGATATTACCCC 57.328 41.667 0.00 0.00 0.00 4.95
1630 1847 8.807118 TGTATGTCTTCATCTCAGATATTACCC 58.193 37.037 0.00 0.00 35.70 3.69
1787 2005 0.465287 AACCACAGGTTACGTCCGTT 59.535 50.000 0.00 0.00 44.94 4.44
1885 3945 4.926238 CAGCTTATCTGAAGTCTTCAACGT 59.074 41.667 15.97 7.74 45.72 3.99
1980 4040 0.263172 ATCCCACCTCACGATCTCCT 59.737 55.000 0.00 0.00 0.00 3.69
1991 4051 6.153924 AGAACCTCTATAATTGATCCCACCT 58.846 40.000 0.00 0.00 0.00 4.00
2048 6680 0.179012 GGGTGGGTTCGTTTTGGAGA 60.179 55.000 0.00 0.00 0.00 3.71
2056 6688 1.412453 TACTTGCTGGGTGGGTTCGT 61.412 55.000 0.00 0.00 0.00 3.85
2160 6801 7.498239 AGTTCAGGAAACAAAGGAACTAGTAAC 59.502 37.037 0.00 0.00 44.46 2.50
2176 6830 3.066203 GGCTTTTCGTTCAGTTCAGGAAA 59.934 43.478 0.00 0.00 0.00 3.13
2352 7112 3.740115 TCCTACAAACCAACAAGCTCTC 58.260 45.455 0.00 0.00 0.00 3.20
2443 7209 8.314021 GGGAAGAATTTTTGTGAGATTGGTAAT 58.686 33.333 0.00 0.00 0.00 1.89
2448 7214 9.933723 AAATAGGGAAGAATTTTTGTGAGATTG 57.066 29.630 0.00 0.00 0.00 2.67
2583 7351 6.433093 GGGCCTTCTTGTTTCTTACAATTCTA 59.567 38.462 0.84 0.00 45.31 2.10
2584 7352 5.243954 GGGCCTTCTTGTTTCTTACAATTCT 59.756 40.000 0.84 0.00 45.31 2.40
2585 7353 5.243954 AGGGCCTTCTTGTTTCTTACAATTC 59.756 40.000 0.00 0.00 45.31 2.17
2587 7355 4.524328 CAGGGCCTTCTTGTTTCTTACAAT 59.476 41.667 1.32 0.00 45.31 2.71
2610 7585 4.034510 GCTGACACCACTTAGTTCATATGC 59.965 45.833 0.00 0.00 0.00 3.14
2621 7596 2.546795 CGAAAGAGAGCTGACACCACTT 60.547 50.000 0.00 0.00 0.00 3.16
2633 7608 8.768019 TGATTTCATATGTTATGCGAAAGAGAG 58.232 33.333 1.90 0.00 0.00 3.20
2686 7662 1.282930 GGACAAGACCGCGACACTTC 61.283 60.000 8.23 0.00 0.00 3.01
2692 7668 0.878523 CAAACTGGACAAGACCGCGA 60.879 55.000 8.23 0.00 0.00 5.87
2708 7684 5.620206 TCTCAGCCTTCTACAAATGTCAAA 58.380 37.500 0.00 0.00 0.00 2.69
2721 7697 3.126000 CCGTTGATTTTCTCTCAGCCTTC 59.874 47.826 0.00 0.00 0.00 3.46
2754 7730 9.817809 TGAGAATTAAACTGATTCTAGCGTATT 57.182 29.630 0.00 0.00 42.34 1.89
2776 7752 0.678950 TCACTGCATTCACCGTGAGA 59.321 50.000 0.64 0.00 33.01 3.27
2823 7799 5.189180 GGTGCCCCATTTTATGCAAATTTA 58.811 37.500 0.00 0.00 32.24 1.40
2871 7847 1.283321 TGCAGGGTGCCATTATGTGTA 59.717 47.619 0.00 0.00 44.23 2.90
2885 7861 2.186160 TGTGCTGAAACGTGCAGGG 61.186 57.895 17.29 0.00 40.06 4.45
2904 7880 0.683973 AGCAAGTCAGACTGTCTGGG 59.316 55.000 31.26 20.76 44.39 4.45
2905 7881 1.342496 TGAGCAAGTCAGACTGTCTGG 59.658 52.381 31.26 19.14 44.39 3.86
2933 7909 3.035576 GCCGCACCGTTTAAGCTCC 62.036 63.158 0.00 0.00 0.00 4.70
2970 7953 0.250727 TTTAAGCTCCTGCGCCTTGT 60.251 50.000 4.18 0.00 45.42 3.16
2971 7954 0.169009 GTTTAAGCTCCTGCGCCTTG 59.831 55.000 4.18 0.00 45.42 3.61
2972 7955 1.298859 CGTTTAAGCTCCTGCGCCTT 61.299 55.000 4.18 2.57 45.42 4.35
2973 7956 1.741770 CGTTTAAGCTCCTGCGCCT 60.742 57.895 4.18 0.00 45.42 5.52
2974 7957 2.750888 CCGTTTAAGCTCCTGCGCC 61.751 63.158 4.18 0.00 45.42 6.53
2975 7958 2.033194 ACCGTTTAAGCTCCTGCGC 61.033 57.895 0.00 0.00 45.42 6.09
2976 7959 1.787847 CACCGTTTAAGCTCCTGCG 59.212 57.895 0.00 0.00 45.42 5.18
2977 7960 1.502190 GCACCGTTTAAGCTCCTGC 59.498 57.895 0.00 0.00 40.05 4.85
2978 7961 1.635663 CCGCACCGTTTAAGCTCCTG 61.636 60.000 0.00 0.00 0.00 3.86
2979 7962 1.375523 CCGCACCGTTTAAGCTCCT 60.376 57.895 0.00 0.00 0.00 3.69
2980 7963 0.390209 TACCGCACCGTTTAAGCTCC 60.390 55.000 0.00 0.00 0.00 4.70
2981 7964 0.717784 GTACCGCACCGTTTAAGCTC 59.282 55.000 0.00 0.00 0.00 4.09
2982 7965 0.319405 AGTACCGCACCGTTTAAGCT 59.681 50.000 0.00 0.00 0.00 3.74
2983 7966 1.150827 AAGTACCGCACCGTTTAAGC 58.849 50.000 0.00 0.00 0.00 3.09
2984 7967 2.925563 CCTAAGTACCGCACCGTTTAAG 59.074 50.000 0.00 0.00 0.00 1.85
2985 7968 2.930455 GCCTAAGTACCGCACCGTTTAA 60.930 50.000 0.00 0.00 0.00 1.52
2986 7969 1.404047 GCCTAAGTACCGCACCGTTTA 60.404 52.381 0.00 0.00 0.00 2.01
2987 7970 0.671472 GCCTAAGTACCGCACCGTTT 60.671 55.000 0.00 0.00 0.00 3.60
2988 7971 1.079612 GCCTAAGTACCGCACCGTT 60.080 57.895 0.00 0.00 0.00 4.44
2989 7972 2.575461 GCCTAAGTACCGCACCGT 59.425 61.111 0.00 0.00 0.00 4.83
2990 7973 2.202837 GGCCTAAGTACCGCACCG 60.203 66.667 0.00 0.00 0.00 4.94
2991 7974 0.461516 GAAGGCCTAAGTACCGCACC 60.462 60.000 5.16 0.00 0.00 5.01
2992 7975 0.535797 AGAAGGCCTAAGTACCGCAC 59.464 55.000 5.16 0.00 0.00 5.34
2993 7976 1.066430 CAAGAAGGCCTAAGTACCGCA 60.066 52.381 5.16 0.00 0.00 5.69
2994 7977 1.653151 CAAGAAGGCCTAAGTACCGC 58.347 55.000 5.16 0.00 0.00 5.68
2995 7978 2.311124 CCAAGAAGGCCTAAGTACCG 57.689 55.000 5.16 0.00 0.00 4.02
3006 7989 1.656652 CACGTATCTGGCCAAGAAGG 58.343 55.000 7.01 2.86 38.79 3.46
3007 7990 1.009829 GCACGTATCTGGCCAAGAAG 58.990 55.000 7.01 0.00 38.79 2.85
3008 7991 0.392461 GGCACGTATCTGGCCAAGAA 60.392 55.000 7.01 0.00 46.92 2.52
3009 7992 1.220749 GGCACGTATCTGGCCAAGA 59.779 57.895 7.01 7.16 46.92 3.02
3010 7993 3.813596 GGCACGTATCTGGCCAAG 58.186 61.111 7.01 0.66 46.92 3.61
3014 7997 3.121544 GTTAACTAGGCACGTATCTGGC 58.878 50.000 0.00 0.00 36.97 4.85
3015 7998 4.380841 TGTTAACTAGGCACGTATCTGG 57.619 45.455 7.22 0.00 0.00 3.86
3016 7999 6.715344 TTTTGTTAACTAGGCACGTATCTG 57.285 37.500 7.22 0.00 0.00 2.90
3057 8040 5.362430 AGATGTAGATGGACTCCTTCAGAAC 59.638 44.000 12.38 8.28 31.13 3.01
3112 8096 2.232941 CAGGATTTGCATCAGTGGCTTT 59.767 45.455 0.00 0.00 0.00 3.51
3119 8103 3.067742 GGAACCATCAGGATTTGCATCAG 59.932 47.826 0.00 0.00 38.69 2.90
3182 8173 5.989777 ACGTTCTGCACTTAGTTAGAATTGT 59.010 36.000 10.64 9.85 32.44 2.71
3192 8183 3.377439 TGTACACACGTTCTGCACTTAG 58.623 45.455 0.00 0.00 0.00 2.18
3205 8196 8.219436 GCATATTGCATATTCAATGTACACAC 57.781 34.615 10.41 0.00 44.26 3.82
3225 8216 6.458751 CGTTGCTAGGTTCATTTTCAGCATAT 60.459 38.462 0.00 0.00 38.68 1.78
3255 8246 1.732732 CGTTGACCAAGGAGTAGAGCG 60.733 57.143 0.00 0.00 0.00 5.03
3260 8251 3.599412 GTGCGTTGACCAAGGAGTA 57.401 52.632 6.63 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.