Multiple sequence alignment - TraesCS2B01G459300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G459300 chr2B 100.000 3957 0 0 1 3957 653744973 653748929 0.000000e+00 7308.0
1 TraesCS2B01G459300 chr2B 87.212 477 61 0 2277 2753 653611135 653611611 9.670000e-151 544.0
2 TraesCS2B01G459300 chr2B 86.583 477 64 0 2277 2753 653619738 653620214 9.740000e-146 527.0
3 TraesCS2B01G459300 chr2D 89.488 2949 158 68 579 3449 547249803 547252677 0.000000e+00 3589.0
4 TraesCS2B01G459300 chr2D 90.840 1190 75 19 2277 3447 555133705 555134879 0.000000e+00 1563.0
5 TraesCS2B01G459300 chr2D 86.694 481 63 1 2274 2753 546872603 546873083 2.090000e-147 532.0
6 TraesCS2B01G459300 chr2D 86.583 477 64 0 2277 2753 546932419 546932895 9.740000e-146 527.0
7 TraesCS2B01G459300 chr2D 91.875 160 10 3 2164 2321 29675311 29675153 1.850000e-53 220.0
8 TraesCS2B01G459300 chr2D 81.959 194 26 5 3767 3954 555135318 555135508 5.290000e-34 156.0
9 TraesCS2B01G459300 chr2A 89.451 2114 125 50 1642 3716 690738774 690740828 0.000000e+00 2579.0
10 TraesCS2B01G459300 chr2A 90.762 1050 69 20 579 1620 690737748 690738777 0.000000e+00 1376.0
11 TraesCS2B01G459300 chr2A 87.590 556 42 17 19 558 690737146 690737690 1.560000e-173 619.0
12 TraesCS2B01G459300 chr2A 86.667 465 62 0 2289 2753 689710082 689709618 2.110000e-142 516.0
13 TraesCS2B01G459300 chr2A 94.667 225 11 1 3731 3954 690741051 690741275 8.140000e-92 348.0
14 TraesCS2B01G459300 chr6B 89.891 643 64 1 979 1621 464408127 464408768 0.000000e+00 826.0
15 TraesCS2B01G459300 chr6B 89.375 160 14 3 2164 2321 429111478 429111636 8.670000e-47 198.0
16 TraesCS2B01G459300 chr6B 85.366 82 9 3 1235 1316 532151725 532151647 9.110000e-12 82.4
17 TraesCS2B01G459300 chr7B 89.127 653 47 4 971 1621 616911587 616912217 0.000000e+00 791.0
18 TraesCS2B01G459300 chr3B 85.266 733 68 13 890 1621 280583872 280584565 0.000000e+00 719.0
19 TraesCS2B01G459300 chr3B 90.625 160 12 3 2164 2321 717559892 717559734 4.010000e-50 209.0
20 TraesCS2B01G459300 chr3B 84.302 172 22 3 1308 1479 369100974 369100808 3.160000e-36 163.0
21 TraesCS2B01G459300 chr3B 87.218 133 10 2 1102 1233 369101105 369100979 1.150000e-30 145.0
22 TraesCS2B01G459300 chr4B 87.132 645 59 8 971 1613 548863877 548863255 0.000000e+00 710.0
23 TraesCS2B01G459300 chr3D 84.861 502 76 0 2260 2761 33298448 33297947 1.270000e-139 507.0
24 TraesCS2B01G459300 chr3D 90.000 160 13 3 2164 2321 440213374 440213216 1.860000e-48 204.0
25 TraesCS2B01G459300 chr1D 91.875 160 10 3 2164 2321 359549101 359548943 1.850000e-53 220.0
26 TraesCS2B01G459300 chr5D 90.625 160 12 3 2164 2321 12362691 12362849 4.010000e-50 209.0
27 TraesCS2B01G459300 chr1B 90.625 160 12 3 2164 2321 573314295 573314137 4.010000e-50 209.0
28 TraesCS2B01G459300 chr5A 85.714 182 22 3 1308 1488 262332812 262332990 5.220000e-44 189.0
29 TraesCS2B01G459300 chr6D 85.185 81 9 3 1235 1315 348029477 348029554 3.280000e-11 80.5
30 TraesCS2B01G459300 chr6A 85.185 81 9 3 1235 1315 495465163 495465086 3.280000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G459300 chr2B 653744973 653748929 3956 False 7308.0 7308 100.0000 1 3957 1 chr2B.!!$F3 3956
1 TraesCS2B01G459300 chr2D 547249803 547252677 2874 False 3589.0 3589 89.4880 579 3449 1 chr2D.!!$F3 2870
2 TraesCS2B01G459300 chr2D 555133705 555135508 1803 False 859.5 1563 86.3995 2277 3954 2 chr2D.!!$F4 1677
3 TraesCS2B01G459300 chr2A 690737146 690741275 4129 False 1230.5 2579 90.6175 19 3954 4 chr2A.!!$F1 3935
4 TraesCS2B01G459300 chr6B 464408127 464408768 641 False 826.0 826 89.8910 979 1621 1 chr6B.!!$F2 642
5 TraesCS2B01G459300 chr7B 616911587 616912217 630 False 791.0 791 89.1270 971 1621 1 chr7B.!!$F1 650
6 TraesCS2B01G459300 chr3B 280583872 280584565 693 False 719.0 719 85.2660 890 1621 1 chr3B.!!$F1 731
7 TraesCS2B01G459300 chr4B 548863255 548863877 622 True 710.0 710 87.1320 971 1613 1 chr4B.!!$R1 642
8 TraesCS2B01G459300 chr3D 33297947 33298448 501 True 507.0 507 84.8610 2260 2761 1 chr3D.!!$R1 501

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
133 134 0.755686 ATCTGCCGGAAGACATCTCC 59.244 55.0 16.56 0.00 0.0 3.71 F
1321 1403 0.246635 TTGCTTCAGGGTACGCTCTC 59.753 55.0 9.89 0.43 0.0 3.20 F
1357 1454 0.243907 CTCTGCTTCTCCCGTTTCGA 59.756 55.0 0.00 0.00 0.0 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1337 1434 0.243907 CGAAACGGGAGAAGCAGAGA 59.756 55.0 0.0 0.0 0.0 3.10 R
2257 2383 0.543277 CAGCCATACCTCCTCTGCAA 59.457 55.0 0.0 0.0 0.0 4.08 R
3113 3249 1.016627 GCAACTGACAAGCACACTGA 58.983 50.0 0.0 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.624169 ATTTGGTCACGTTCCGGTG 58.376 52.632 0.00 0.00 39.29 4.94
19 20 1.512156 ATTTGGTCACGTTCCGGTGC 61.512 55.000 0.00 0.00 37.83 5.01
20 21 2.596553 TTTGGTCACGTTCCGGTGCT 62.597 55.000 0.00 0.00 37.83 4.40
21 22 3.041940 GGTCACGTTCCGGTGCTG 61.042 66.667 0.00 0.00 37.83 4.41
22 23 2.279918 GTCACGTTCCGGTGCTGT 60.280 61.111 0.00 0.00 37.83 4.40
23 24 1.885850 GTCACGTTCCGGTGCTGTT 60.886 57.895 0.00 0.00 37.83 3.16
24 25 1.885388 TCACGTTCCGGTGCTGTTG 60.885 57.895 0.00 0.00 37.83 3.33
25 26 2.590575 ACGTTCCGGTGCTGTTGG 60.591 61.111 0.00 0.00 0.00 3.77
26 27 2.280524 CGTTCCGGTGCTGTTGGA 60.281 61.111 0.00 0.00 0.00 3.53
27 28 1.671054 CGTTCCGGTGCTGTTGGAT 60.671 57.895 0.00 0.00 0.00 3.41
30 31 2.156098 GTTCCGGTGCTGTTGGATTAA 58.844 47.619 0.00 0.00 0.00 1.40
95 96 5.913137 TTGGTCCACAAGCAAATATTAGG 57.087 39.130 0.00 0.00 42.19 2.69
96 97 5.186256 TGGTCCACAAGCAAATATTAGGA 57.814 39.130 0.00 0.00 30.91 2.94
97 98 5.765510 TGGTCCACAAGCAAATATTAGGAT 58.234 37.500 0.00 0.00 30.91 3.24
133 134 0.755686 ATCTGCCGGAAGACATCTCC 59.244 55.000 16.56 0.00 0.00 3.71
154 155 3.740832 CCCATTTCGCTTTGTTTCCTTTC 59.259 43.478 0.00 0.00 0.00 2.62
176 177 2.294074 GCCAGATATTTGCCAACCGTA 58.706 47.619 0.00 0.00 0.00 4.02
178 179 3.488553 GCCAGATATTTGCCAACCGTAAC 60.489 47.826 0.00 0.00 0.00 2.50
186 187 5.968528 TTTGCCAACCGTAACAAAGATAT 57.031 34.783 0.00 0.00 0.00 1.63
188 189 7.450124 TTTGCCAACCGTAACAAAGATATAA 57.550 32.000 0.00 0.00 0.00 0.98
189 190 7.450124 TTGCCAACCGTAACAAAGATATAAA 57.550 32.000 0.00 0.00 0.00 1.40
205 207 1.818959 TAAACTGCACGTACCCGCCT 61.819 55.000 0.00 0.00 37.70 5.52
221 223 0.960861 GCCTAGTGTGAAAGGGTGCC 60.961 60.000 0.00 0.00 33.17 5.01
236 238 2.430694 GGGTGCCAAACAGAATATTCCC 59.569 50.000 11.92 2.83 0.00 3.97
239 241 3.769300 GTGCCAAACAGAATATTCCCCTT 59.231 43.478 11.92 0.29 0.00 3.95
246 248 6.749036 AACAGAATATTCCCCTTCTACGAT 57.251 37.500 11.92 0.00 30.70 3.73
249 251 7.668492 ACAGAATATTCCCCTTCTACGATAAC 58.332 38.462 11.92 0.00 30.70 1.89
250 252 7.509659 ACAGAATATTCCCCTTCTACGATAACT 59.490 37.037 11.92 0.00 30.70 2.24
251 253 9.021807 CAGAATATTCCCCTTCTACGATAACTA 57.978 37.037 11.92 0.00 30.70 2.24
252 254 9.022884 AGAATATTCCCCTTCTACGATAACTAC 57.977 37.037 11.92 0.00 30.08 2.73
253 255 8.953223 AATATTCCCCTTCTACGATAACTACT 57.047 34.615 0.00 0.00 0.00 2.57
254 256 6.897706 ATTCCCCTTCTACGATAACTACTC 57.102 41.667 0.00 0.00 0.00 2.59
280 282 4.040952 ACTTCAGAACCTGATTGTACAGCT 59.959 41.667 0.00 0.00 40.39 4.24
296 298 1.617850 CAGCTAGGCTTCGATGATCCT 59.382 52.381 1.89 2.88 36.40 3.24
350 356 6.288426 TCGAACAAATTGTCGTTCATTGTA 57.712 33.333 0.00 0.00 41.28 2.41
353 359 6.084939 CGAACAAATTGTCGTTCATTGTACAG 59.915 38.462 0.00 0.00 41.28 2.74
358 364 4.265904 TGTCGTTCATTGTACAGGACAT 57.734 40.909 0.00 0.00 38.07 3.06
366 372 5.863965 TCATTGTACAGGACATTGTCTCAA 58.136 37.500 16.02 12.93 39.44 3.02
400 406 7.973048 TCTACTACTAACCAAACTCCATGAT 57.027 36.000 0.00 0.00 0.00 2.45
412 418 3.583054 CCATGATTGGAGGCACACT 57.417 52.632 0.00 0.00 46.92 3.55
443 449 7.763172 AATTGAATACGTTCACTTTTGCAAA 57.237 28.000 8.05 8.05 43.72 3.68
445 451 5.641709 TGAATACGTTCACTTTTGCAAACA 58.358 33.333 12.39 2.72 39.36 2.83
563 576 9.642327 TCAACTTAAAACGAGTGCTTATATACA 57.358 29.630 0.00 0.00 0.00 2.29
566 579 9.042008 ACTTAAAACGAGTGCTTATATACATGG 57.958 33.333 0.00 0.00 0.00 3.66
568 581 4.873746 ACGAGTGCTTATATACATGGCT 57.126 40.909 0.00 0.00 0.00 4.75
570 583 6.340962 ACGAGTGCTTATATACATGGCTAA 57.659 37.500 0.00 0.00 0.00 3.09
571 584 6.936279 ACGAGTGCTTATATACATGGCTAAT 58.064 36.000 0.00 0.00 0.00 1.73
573 586 8.528643 ACGAGTGCTTATATACATGGCTAATAA 58.471 33.333 0.00 0.00 0.00 1.40
574 587 9.366216 CGAGTGCTTATATACATGGCTAATAAA 57.634 33.333 0.00 0.00 0.00 1.40
577 590 9.755064 GTGCTTATATACATGGCTAATAAAACG 57.245 33.333 0.00 0.00 0.00 3.60
686 736 1.135774 GGAAGAAAATCGCAACGACCC 60.136 52.381 0.00 0.00 39.18 4.46
841 894 6.857083 TCCTCCTTCCCAATATAAAATCCA 57.143 37.500 0.00 0.00 0.00 3.41
847 900 4.006989 TCCCAATATAAAATCCATCCGCG 58.993 43.478 0.00 0.00 0.00 6.46
912 969 4.994756 CCCACCCCCACAGCAACC 62.995 72.222 0.00 0.00 0.00 3.77
914 971 2.123511 CACCCCCACAGCAACCAA 60.124 61.111 0.00 0.00 0.00 3.67
915 972 2.123468 ACCCCCACAGCAACCAAC 60.123 61.111 0.00 0.00 0.00 3.77
919 976 2.332514 CCACAGCAACCAACGCAG 59.667 61.111 0.00 0.00 0.00 5.18
923 980 4.927782 AGCAACCAACGCAGGCGA 62.928 61.111 21.62 0.00 42.83 5.54
924 981 3.959975 GCAACCAACGCAGGCGAA 61.960 61.111 21.62 0.00 42.83 4.70
925 982 2.252260 CAACCAACGCAGGCGAAG 59.748 61.111 21.62 11.45 42.83 3.79
970 1027 2.359478 CGTCCCGGAGTTTTGGGG 60.359 66.667 0.73 0.00 46.03 4.96
971 1028 2.841317 GTCCCGGAGTTTTGGGGT 59.159 61.111 0.73 0.00 46.03 4.95
972 1029 1.602605 GTCCCGGAGTTTTGGGGTG 60.603 63.158 0.73 0.00 46.03 4.61
1321 1403 0.246635 TTGCTTCAGGGTACGCTCTC 59.753 55.000 9.89 0.43 0.00 3.20
1330 1412 1.874466 GTACGCTCTCCGCTTGCTC 60.874 63.158 0.00 0.00 41.76 4.26
1331 1413 2.046864 TACGCTCTCCGCTTGCTCT 61.047 57.895 0.00 0.00 41.76 4.09
1337 1434 1.079266 CTCCGCTTGCTCTGCTCTT 60.079 57.895 0.00 0.00 0.00 2.85
1346 1443 1.067000 TGCTCTGCTCTTCTCTGCTTC 60.067 52.381 0.00 0.00 0.00 3.86
1357 1454 0.243907 CTCTGCTTCTCCCGTTTCGA 59.756 55.000 0.00 0.00 0.00 3.71
1363 1460 0.889994 TTCTCCCGTTTCGATTCCGA 59.110 50.000 0.00 0.00 43.96 4.55
1401 1501 1.008881 GATCGGAGCGTGTATGCGA 60.009 57.895 0.00 0.00 44.65 5.10
1403 1503 1.299089 TCGGAGCGTGTATGCGATG 60.299 57.895 0.00 0.00 40.67 3.84
1463 1563 2.318578 CGTGTGTGATTGATTGGTTGC 58.681 47.619 0.00 0.00 0.00 4.17
1637 1741 3.863637 CCCCCTCCCCTCCCCTAG 61.864 77.778 0.00 0.00 0.00 3.02
1668 1784 4.823419 CGCCACAACCGCCGGATA 62.823 66.667 11.71 0.00 0.00 2.59
1754 1870 1.926511 CTTTGCGTGTCATGGCCTCC 61.927 60.000 3.32 0.00 0.00 4.30
1757 1873 2.981302 CGTGTCATGGCCTCCTGA 59.019 61.111 3.32 1.21 0.00 3.86
1758 1874 1.448540 CGTGTCATGGCCTCCTGAC 60.449 63.158 20.21 20.21 41.69 3.51
1781 1897 1.342674 ACGGAAGTAGCATGGTCCCTA 60.343 52.381 0.00 0.00 46.88 3.53
1799 1915 3.941483 CCCTATCACGCTTTTGATTCTGT 59.059 43.478 0.00 0.00 37.42 3.41
1837 1953 0.883370 GGAGACGGCGTTTGGACTTT 60.883 55.000 16.19 0.00 0.00 2.66
1896 2018 7.322664 AGTATTTTTACCTAATCGTTCGTGGA 58.677 34.615 0.00 0.00 0.00 4.02
1915 2037 5.820423 CGTGGAGATGGGTGTTTTATATTCA 59.180 40.000 0.00 0.00 0.00 2.57
1916 2038 6.017934 CGTGGAGATGGGTGTTTTATATTCAG 60.018 42.308 0.00 0.00 0.00 3.02
1917 2039 6.828785 GTGGAGATGGGTGTTTTATATTCAGT 59.171 38.462 0.00 0.00 0.00 3.41
1918 2040 7.339466 GTGGAGATGGGTGTTTTATATTCAGTT 59.661 37.037 0.00 0.00 0.00 3.16
1919 2041 7.893302 TGGAGATGGGTGTTTTATATTCAGTTT 59.107 33.333 0.00 0.00 0.00 2.66
1945 2070 5.928839 GCATCAGATTACTGTGGATAATCGT 59.071 40.000 0.00 0.00 41.81 3.73
1946 2071 7.090808 GCATCAGATTACTGTGGATAATCGTA 58.909 38.462 0.00 0.00 41.81 3.43
1947 2072 7.062371 GCATCAGATTACTGTGGATAATCGTAC 59.938 40.741 0.00 0.00 41.81 3.67
1948 2073 7.818997 TCAGATTACTGTGGATAATCGTACT 57.181 36.000 0.00 0.00 41.81 2.73
1949 2074 7.649057 TCAGATTACTGTGGATAATCGTACTG 58.351 38.462 0.00 0.00 41.81 2.74
1950 2075 7.501225 TCAGATTACTGTGGATAATCGTACTGA 59.499 37.037 0.00 0.00 41.81 3.41
1951 2076 7.591795 CAGATTACTGTGGATAATCGTACTGAC 59.408 40.741 0.00 0.00 41.81 3.51
1952 2077 6.762702 TTACTGTGGATAATCGTACTGACA 57.237 37.500 0.00 0.00 0.00 3.58
1953 2078 5.854010 ACTGTGGATAATCGTACTGACAT 57.146 39.130 0.00 0.00 0.00 3.06
1954 2079 6.222038 ACTGTGGATAATCGTACTGACATT 57.778 37.500 0.00 0.00 0.00 2.71
1955 2080 6.640518 ACTGTGGATAATCGTACTGACATTT 58.359 36.000 0.00 0.00 0.00 2.32
1956 2081 6.757010 ACTGTGGATAATCGTACTGACATTTC 59.243 38.462 0.00 0.00 0.00 2.17
1957 2082 6.046593 TGTGGATAATCGTACTGACATTTCC 58.953 40.000 0.00 0.00 0.00 3.13
1958 2083 5.175126 GTGGATAATCGTACTGACATTTCCG 59.825 44.000 0.00 0.00 0.00 4.30
1959 2084 5.163488 TGGATAATCGTACTGACATTTCCGT 60.163 40.000 0.00 0.00 0.00 4.69
1997 2123 2.810650 GGATACAAGTAGGCGACAGTG 58.189 52.381 0.00 0.33 0.00 3.66
1998 2124 2.481449 GGATACAAGTAGGCGACAGTGG 60.481 54.545 0.00 0.00 0.00 4.00
1999 2125 1.913778 TACAAGTAGGCGACAGTGGA 58.086 50.000 0.00 0.00 0.00 4.02
2000 2126 1.267121 ACAAGTAGGCGACAGTGGAT 58.733 50.000 0.00 0.00 0.00 3.41
2001 2127 2.453521 ACAAGTAGGCGACAGTGGATA 58.546 47.619 0.00 0.00 0.00 2.59
2002 2128 2.427453 ACAAGTAGGCGACAGTGGATAG 59.573 50.000 0.00 0.00 0.00 2.08
2003 2129 2.688446 CAAGTAGGCGACAGTGGATAGA 59.312 50.000 0.00 0.00 0.00 1.98
2004 2130 3.231207 AGTAGGCGACAGTGGATAGAT 57.769 47.619 0.00 0.00 0.00 1.98
2005 2131 2.887783 AGTAGGCGACAGTGGATAGATG 59.112 50.000 0.00 0.00 0.00 2.90
2006 2132 1.781786 AGGCGACAGTGGATAGATGT 58.218 50.000 0.00 0.00 0.00 3.06
2076 2202 5.902613 AATAACATGGTGACCTTGACATG 57.097 39.130 22.50 10.52 44.61 3.21
2077 2203 3.507162 AACATGGTGACCTTGACATGA 57.493 42.857 22.50 0.00 42.39 3.07
2079 2205 2.086869 CATGGTGACCTTGACATGACC 58.913 52.381 11.76 0.00 42.39 4.02
2080 2206 1.434188 TGGTGACCTTGACATGACCT 58.566 50.000 2.11 0.00 0.00 3.85
2081 2207 1.774254 TGGTGACCTTGACATGACCTT 59.226 47.619 2.11 0.00 0.00 3.50
2082 2208 2.976185 TGGTGACCTTGACATGACCTTA 59.024 45.455 2.11 0.00 0.00 2.69
2146 2272 4.880759 TCCATTTGTTTTGCCATGTACTG 58.119 39.130 0.00 0.00 0.00 2.74
2214 2340 5.794726 ATCATCTTGATCTCCTCTCTGTG 57.205 43.478 0.00 0.00 29.59 3.66
2232 2358 6.929049 TCTCTGTGTTTCGAAGTTTATCATGT 59.071 34.615 0.00 0.00 0.00 3.21
2236 2362 8.596271 TGTGTTTCGAAGTTTATCATGTTCTA 57.404 30.769 0.00 0.00 0.00 2.10
2241 2367 7.303634 TCGAAGTTTATCATGTTCTAAAGCC 57.696 36.000 0.00 0.00 0.00 4.35
2244 2370 7.254455 CGAAGTTTATCATGTTCTAAAGCCGAT 60.254 37.037 0.00 0.00 0.00 4.18
2257 2383 2.514458 AGCCGATCCTTCAAATTGGT 57.486 45.000 0.00 0.00 31.22 3.67
2376 2502 1.302033 CTTTGAGCAGAGCGGTGGT 60.302 57.895 0.00 0.00 0.00 4.16
2607 2733 0.977395 CCGAGTTCCTCAAGGACCTT 59.023 55.000 0.00 0.00 45.39 3.50
2787 2913 2.431954 ATCCCACAAGATCAGCAAGG 57.568 50.000 0.00 0.00 0.00 3.61
2809 2937 2.149973 ATCTTGACCCCATTTCCTGC 57.850 50.000 0.00 0.00 0.00 4.85
2814 2942 2.761213 CCCCATTTCCTGCCCAGC 60.761 66.667 0.00 0.00 0.00 4.85
2845 2974 5.572211 CATCTGTTTATGTGGATTGGTTCG 58.428 41.667 0.00 0.00 0.00 3.95
2861 2990 3.007940 TGGTTCGGAACTTCTGATGATGT 59.992 43.478 19.40 0.00 30.80 3.06
2862 2991 4.221924 TGGTTCGGAACTTCTGATGATGTA 59.778 41.667 19.40 0.00 30.80 2.29
2881 3011 7.056006 TGATGTATATGCTGATTTGGTCTGTT 58.944 34.615 0.00 0.00 0.00 3.16
2935 3065 3.970410 CAGCTGAAGGCCACCCCA 61.970 66.667 8.42 0.00 43.05 4.96
2977 3107 2.031012 TGGCCGTGTTCTGCTGAG 59.969 61.111 0.00 0.00 0.00 3.35
2990 3120 0.239082 TGCTGAGTTTTGCATCGCTG 59.761 50.000 0.00 0.00 33.94 5.18
3028 3164 4.111916 AGCAAATGAGTGTTTCGTTTTGG 58.888 39.130 0.00 0.00 41.88 3.28
3311 3448 2.906691 ATCTGCAGTAGATCAGGTGC 57.093 50.000 14.67 0.58 42.54 5.01
3316 3453 2.831526 TGCAGTAGATCAGGTGCTTGTA 59.168 45.455 12.64 0.00 36.84 2.41
3337 3474 2.618241 AGCTTGACTGAACGCAATTGAA 59.382 40.909 10.34 0.00 0.00 2.69
3376 3513 0.868406 CTTCTGACGGTTGGACTTGC 59.132 55.000 0.00 0.00 0.00 4.01
3408 3565 3.315949 CCTTCCCGGGGTGAACGA 61.316 66.667 23.50 0.00 0.00 3.85
3425 3586 2.890941 GACCGAAAACCTCGTTCGT 58.109 52.632 5.90 0.00 46.65 3.85
3428 3589 0.598158 CCGAAAACCTCGTTCGTCCA 60.598 55.000 5.90 0.00 46.65 4.02
3471 3643 4.403734 TCAAACCCTTCAAACCATCCTAC 58.596 43.478 0.00 0.00 0.00 3.18
3474 3646 2.027469 ACCCTTCAAACCATCCTACGTC 60.027 50.000 0.00 0.00 0.00 4.34
3477 3649 0.533491 TCAAACCATCCTACGTCCGG 59.467 55.000 0.00 0.00 0.00 5.14
3478 3650 0.461339 CAAACCATCCTACGTCCGGG 60.461 60.000 0.00 0.00 0.00 5.73
3479 3651 0.906282 AAACCATCCTACGTCCGGGT 60.906 55.000 0.00 0.00 0.00 5.28
3481 3653 1.143183 CCATCCTACGTCCGGGTTG 59.857 63.158 0.00 0.00 0.00 3.77
3482 3654 1.610554 CCATCCTACGTCCGGGTTGT 61.611 60.000 0.00 0.00 0.00 3.32
3484 3656 1.325476 ATCCTACGTCCGGGTTGTCC 61.325 60.000 0.00 0.00 0.00 4.02
3493 3665 3.905249 GGGTTGTCCGGCATCTTC 58.095 61.111 0.00 0.00 33.83 2.87
3494 3666 1.749258 GGGTTGTCCGGCATCTTCC 60.749 63.158 0.00 0.00 33.83 3.46
3515 3687 3.007940 CCAAACCCCGCATATCTATGAGA 59.992 47.826 1.37 0.00 35.84 3.27
3535 3707 5.714333 TGAGAGCAGATATTAGAAGGCCTAG 59.286 44.000 5.16 0.00 0.00 3.02
3538 3710 3.056465 GCAGATATTAGAAGGCCTAGCGT 60.056 47.826 5.16 0.00 0.00 5.07
3555 3727 1.211743 CGTGTCCATCATGTCGGATG 58.788 55.000 8.74 0.00 43.40 3.51
3573 3745 1.456331 GCAGCATAACCTGGCCCAT 60.456 57.895 0.00 0.00 33.44 4.00
3577 3749 1.153756 CATAACCTGGCCCATCCCC 59.846 63.158 0.00 0.00 0.00 4.81
3578 3750 2.460853 ATAACCTGGCCCATCCCCG 61.461 63.158 0.00 0.00 0.00 5.73
3586 3765 2.670148 GCCCATCCCCGAGTCTTGT 61.670 63.158 0.00 0.00 0.00 3.16
3607 3786 0.116143 ACTCCACTTCCTCTCTGCCT 59.884 55.000 0.00 0.00 0.00 4.75
3613 3792 0.032217 CTTCCTCTCTGCCTCCCTCT 60.032 60.000 0.00 0.00 0.00 3.69
3632 3811 5.424573 CCCTCTGATCCAATCATAGCTCATA 59.575 44.000 0.00 0.00 38.85 2.15
3741 4149 2.896854 CGCCATGGTGGGTCATCG 60.897 66.667 18.06 3.46 38.19 3.84
3768 4176 0.831307 GTCGTCCAAATCCTAGCCCT 59.169 55.000 0.00 0.00 0.00 5.19
3844 4253 3.471244 GACTGCGATCGAGGACCGG 62.471 68.421 21.57 8.16 39.14 5.28
3849 4258 2.697761 CGATCGAGGACCGGTGTGT 61.698 63.158 14.63 0.00 39.14 3.72
3935 4350 1.069935 GAGGCCAGGGCTATCGAAC 59.930 63.158 17.35 0.00 38.98 3.95
3940 4355 1.883084 CAGGGCTATCGAACACGCC 60.883 63.158 8.57 8.57 41.75 5.68
3955 4370 3.887868 GCCCGTGCCCGCATTTAG 61.888 66.667 0.00 0.00 0.00 1.85
3956 4371 3.209097 CCCGTGCCCGCATTTAGG 61.209 66.667 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 1.816074 TAATCCAACAGCACCGGAAC 58.184 50.000 9.46 0.00 31.18 3.62
13 14 1.094785 CCTTAATCCAACAGCACCGG 58.905 55.000 0.00 0.00 0.00 5.28
14 15 2.107950 TCCTTAATCCAACAGCACCG 57.892 50.000 0.00 0.00 0.00 4.94
15 16 3.891049 AGATCCTTAATCCAACAGCACC 58.109 45.455 0.00 0.00 34.67 5.01
16 17 8.677148 TTAATAGATCCTTAATCCAACAGCAC 57.323 34.615 0.00 0.00 34.67 4.40
27 28 9.284968 GGCAACTTGCTATTAATAGATCCTTAA 57.715 33.333 23.84 8.77 44.28 1.85
30 31 6.241645 GGGCAACTTGCTATTAATAGATCCT 58.758 40.000 23.84 3.33 44.28 3.24
46 47 3.427670 CGTCAAACGGGGCAACTT 58.572 55.556 0.00 0.00 38.08 2.66
85 86 7.287005 CCATCCATCCATCCATCCTAATATTTG 59.713 40.741 0.00 0.00 0.00 2.32
93 94 1.379776 CCCATCCATCCATCCATCCT 58.620 55.000 0.00 0.00 0.00 3.24
94 95 0.324091 GCCCATCCATCCATCCATCC 60.324 60.000 0.00 0.00 0.00 3.51
95 96 0.406750 TGCCCATCCATCCATCCATC 59.593 55.000 0.00 0.00 0.00 3.51
96 97 1.006758 GATGCCCATCCATCCATCCAT 59.993 52.381 0.00 0.00 36.46 3.41
97 98 0.406750 GATGCCCATCCATCCATCCA 59.593 55.000 0.00 0.00 36.46 3.41
125 126 2.749621 ACAAAGCGAAATGGGAGATGTC 59.250 45.455 0.00 0.00 0.00 3.06
133 134 3.740832 GGAAAGGAAACAAAGCGAAATGG 59.259 43.478 0.00 0.00 0.00 3.16
154 155 0.385390 GGTTGGCAAATATCTGGCGG 59.615 55.000 0.00 0.00 44.56 6.13
176 177 6.093082 GGGTACGTGCAGTTTATATCTTTGTT 59.907 38.462 5.86 0.00 0.00 2.83
178 179 5.276678 CGGGTACGTGCAGTTTATATCTTTG 60.277 44.000 5.86 0.00 34.81 2.77
186 187 1.374505 GGCGGGTACGTGCAGTTTA 60.375 57.895 5.86 0.00 43.45 2.01
188 189 2.221906 CTAGGCGGGTACGTGCAGTT 62.222 60.000 5.86 0.00 43.45 3.16
189 190 2.677524 TAGGCGGGTACGTGCAGT 60.678 61.111 5.86 0.00 43.45 4.40
205 207 2.303175 GTTTGGCACCCTTTCACACTA 58.697 47.619 0.00 0.00 0.00 2.74
221 223 6.346096 TCGTAGAAGGGGAATATTCTGTTTG 58.654 40.000 14.95 0.00 36.47 2.93
236 238 7.714377 TGAAGTAGGAGTAGTTATCGTAGAAGG 59.286 40.741 0.00 0.00 43.58 3.46
239 241 8.016301 TCTGAAGTAGGAGTAGTTATCGTAGA 57.984 38.462 0.00 0.00 45.75 2.59
246 248 6.787170 TCAGGTTCTGAAGTAGGAGTAGTTA 58.213 40.000 0.00 0.00 37.57 2.24
249 251 6.153680 ACAATCAGGTTCTGAAGTAGGAGTAG 59.846 42.308 1.53 0.00 44.04 2.57
250 252 6.017192 ACAATCAGGTTCTGAAGTAGGAGTA 58.983 40.000 1.53 0.00 44.04 2.59
251 253 4.841246 ACAATCAGGTTCTGAAGTAGGAGT 59.159 41.667 1.53 0.00 44.04 3.85
252 254 5.413309 ACAATCAGGTTCTGAAGTAGGAG 57.587 43.478 1.53 0.00 44.04 3.69
253 255 5.778241 TGTACAATCAGGTTCTGAAGTAGGA 59.222 40.000 0.00 0.00 44.04 2.94
254 256 6.037786 TGTACAATCAGGTTCTGAAGTAGG 57.962 41.667 0.00 0.00 44.04 3.18
280 282 3.181454 GGGAAAAGGATCATCGAAGCCTA 60.181 47.826 0.00 0.00 0.00 3.93
327 333 5.163302 ACAATGAACGACAATTTGTTCGA 57.837 34.783 20.43 6.24 45.91 3.71
328 334 5.904630 TGTACAATGAACGACAATTTGTTCG 59.095 36.000 3.08 10.78 45.91 3.95
329 335 6.359617 CCTGTACAATGAACGACAATTTGTTC 59.640 38.462 3.08 7.65 43.97 3.18
332 338 5.851177 GTCCTGTACAATGAACGACAATTTG 59.149 40.000 0.00 0.00 0.00 2.32
337 343 3.737032 TGTCCTGTACAATGAACGACA 57.263 42.857 0.00 0.00 34.29 4.35
400 406 0.254462 TTGTGACAGTGTGCCTCCAA 59.746 50.000 0.00 0.00 0.00 3.53
412 418 6.612247 AGTGAACGTATTCAATTTGTGACA 57.388 33.333 0.00 0.00 46.40 3.58
445 451 9.549078 GGCTGCTAAGAGATTACTTTACTTTAT 57.451 33.333 0.00 0.00 0.00 1.40
541 554 8.009974 GCCATGTATATAAGCACTCGTTTTAAG 58.990 37.037 0.00 0.00 0.00 1.85
565 578 0.302589 CGACCGGCGTTTTATTAGCC 59.697 55.000 6.01 0.00 46.88 3.93
566 579 0.315625 GCGACCGGCGTTTTATTAGC 60.316 55.000 17.38 0.00 43.41 3.09
841 894 1.221021 GAAGGGTCTTTCCGCGGAT 59.779 57.895 31.56 11.71 37.00 4.18
847 900 1.095600 GCGAATGGAAGGGTCTTTCC 58.904 55.000 5.08 5.08 45.59 3.13
897 954 2.123511 TTGGTTGCTGTGGGGGTG 60.124 61.111 0.00 0.00 0.00 4.61
898 955 2.123468 GTTGGTTGCTGTGGGGGT 60.123 61.111 0.00 0.00 0.00 4.95
901 958 3.198236 CTGCGTTGGTTGCTGTGGG 62.198 63.158 0.00 0.00 0.00 4.61
962 1019 2.125202 CTCCGCGAACACCCCAAAAC 62.125 60.000 8.23 0.00 0.00 2.43
964 1021 2.281208 CTCCGCGAACACCCCAAA 60.281 61.111 8.23 0.00 0.00 3.28
1321 1403 1.079266 AGAAGAGCAGAGCAAGCGG 60.079 57.895 0.00 0.00 37.01 5.52
1330 1412 1.134729 GGGAGAAGCAGAGAAGAGCAG 60.135 57.143 0.00 0.00 0.00 4.24
1331 1413 0.901124 GGGAGAAGCAGAGAAGAGCA 59.099 55.000 0.00 0.00 0.00 4.26
1337 1434 0.243907 CGAAACGGGAGAAGCAGAGA 59.756 55.000 0.00 0.00 0.00 3.10
1401 1501 8.034804 GGAAATAAAATAATAGCGCCAATCCAT 58.965 33.333 2.29 0.00 0.00 3.41
1403 1503 7.602753 AGGAAATAAAATAATAGCGCCAATCC 58.397 34.615 2.29 0.00 0.00 3.01
1629 1733 2.522193 GCGAGGGGACTAGGGGAG 60.522 72.222 0.00 0.00 44.43 4.30
1630 1734 4.153330 GGCGAGGGGACTAGGGGA 62.153 72.222 0.00 0.00 44.43 4.81
1682 1798 3.620761 CGAAACGGGTTGGACTAAAAAC 58.379 45.455 0.00 0.00 0.00 2.43
1754 1870 2.534298 CATGCTACTTCCGTCAGTCAG 58.466 52.381 0.00 0.00 0.00 3.51
1757 1873 1.204941 GACCATGCTACTTCCGTCAGT 59.795 52.381 0.00 0.00 0.00 3.41
1758 1874 1.471676 GGACCATGCTACTTCCGTCAG 60.472 57.143 0.00 0.00 0.00 3.51
1781 1897 5.222631 GGAAAACAGAATCAAAAGCGTGAT 58.777 37.500 0.00 0.00 40.01 3.06
1799 1915 1.228737 CCGGAAAGCAGGGGGAAAA 60.229 57.895 0.00 0.00 0.00 2.29
1837 1953 2.101783 TGGGTCCGCGTTCTAAATAGA 58.898 47.619 4.92 0.00 0.00 1.98
1896 2018 8.034804 GCAAAACTGAATATAAAACACCCATCT 58.965 33.333 0.00 0.00 0.00 2.90
1915 2037 5.316167 TCCACAGTAATCTGATGCAAAACT 58.684 37.500 0.00 0.00 43.76 2.66
1916 2038 5.627499 TCCACAGTAATCTGATGCAAAAC 57.373 39.130 0.00 0.00 43.76 2.43
1917 2039 7.936496 TTATCCACAGTAATCTGATGCAAAA 57.064 32.000 0.00 0.00 43.76 2.44
1918 2040 7.041848 CGATTATCCACAGTAATCTGATGCAAA 60.042 37.037 0.00 0.00 43.76 3.68
1919 2041 6.424812 CGATTATCCACAGTAATCTGATGCAA 59.575 38.462 0.00 0.00 43.76 4.08
1945 2070 3.610040 ATCAGCACGGAAATGTCAGTA 57.390 42.857 0.00 0.00 30.33 2.74
1946 2071 2.479566 ATCAGCACGGAAATGTCAGT 57.520 45.000 0.00 0.00 31.73 3.41
1947 2072 5.490139 AATAATCAGCACGGAAATGTCAG 57.510 39.130 0.00 0.00 0.00 3.51
1948 2073 5.647658 AGAAATAATCAGCACGGAAATGTCA 59.352 36.000 0.00 0.00 0.00 3.58
1949 2074 6.124088 AGAAATAATCAGCACGGAAATGTC 57.876 37.500 0.00 0.00 0.00 3.06
1950 2075 7.716998 AGATAGAAATAATCAGCACGGAAATGT 59.283 33.333 0.00 0.00 0.00 2.71
1951 2076 8.013947 CAGATAGAAATAATCAGCACGGAAATG 58.986 37.037 0.00 0.00 0.00 2.32
1952 2077 7.173907 CCAGATAGAAATAATCAGCACGGAAAT 59.826 37.037 0.00 0.00 0.00 2.17
1953 2078 6.483307 CCAGATAGAAATAATCAGCACGGAAA 59.517 38.462 0.00 0.00 0.00 3.13
1954 2079 5.991606 CCAGATAGAAATAATCAGCACGGAA 59.008 40.000 0.00 0.00 0.00 4.30
1955 2080 5.304357 TCCAGATAGAAATAATCAGCACGGA 59.696 40.000 0.00 0.00 0.00 4.69
1956 2081 5.541845 TCCAGATAGAAATAATCAGCACGG 58.458 41.667 0.00 0.00 0.00 4.94
1957 2082 7.814587 TGTATCCAGATAGAAATAATCAGCACG 59.185 37.037 0.00 0.00 0.00 5.34
1958 2083 9.494271 TTGTATCCAGATAGAAATAATCAGCAC 57.506 33.333 0.00 0.00 0.00 4.40
1959 2084 9.716531 CTTGTATCCAGATAGAAATAATCAGCA 57.283 33.333 0.00 0.00 0.00 4.41
2004 2130 7.710907 GCTGACAGTAAATAATCTGTGGATACA 59.289 37.037 3.99 0.00 43.64 2.29
2005 2131 7.710907 TGCTGACAGTAAATAATCTGTGGATAC 59.289 37.037 3.99 0.00 43.64 2.24
2006 2132 7.791029 TGCTGACAGTAAATAATCTGTGGATA 58.209 34.615 3.99 0.00 43.64 2.59
2010 2136 7.584108 TGTTTGCTGACAGTAAATAATCTGTG 58.416 34.615 19.67 0.00 43.64 3.66
2020 2146 6.795098 ATTCGTAATGTTTGCTGACAGTAA 57.205 33.333 1.38 1.38 32.65 2.24
2021 2147 6.425417 TCAATTCGTAATGTTTGCTGACAGTA 59.575 34.615 3.99 0.00 32.19 2.74
2039 2165 8.003224 CACCATGTTATTTGTGTTTTCAATTCG 58.997 33.333 0.00 0.00 0.00 3.34
2102 2228 3.402628 TCCTCTCTGGTGCTTTACAAC 57.597 47.619 0.00 0.00 37.07 3.32
2214 2340 9.052080 GCTTTAGAACATGATAAACTTCGAAAC 57.948 33.333 0.00 0.00 0.00 2.78
2232 2358 5.125417 CCAATTTGAAGGATCGGCTTTAGAA 59.875 40.000 0.00 0.00 0.00 2.10
2236 2362 3.165071 ACCAATTTGAAGGATCGGCTTT 58.835 40.909 0.00 0.00 0.00 3.51
2241 2367 3.191162 TCTGCAACCAATTTGAAGGATCG 59.809 43.478 0.00 0.00 41.00 3.69
2244 2370 2.892852 CCTCTGCAACCAATTTGAAGGA 59.107 45.455 0.00 0.00 41.00 3.36
2257 2383 0.543277 CAGCCATACCTCCTCTGCAA 59.457 55.000 0.00 0.00 0.00 4.08
2361 2487 2.031012 CAACCACCGCTCTGCTCA 59.969 61.111 0.00 0.00 0.00 4.26
2571 2697 1.982938 GGTGTAGGAGTGGACGGCT 60.983 63.158 0.00 0.00 0.00 5.52
2607 2733 1.154093 GTCGATCTTGCCGTCGTCA 60.154 57.895 0.00 0.00 38.85 4.35
2787 2913 2.167075 CAGGAAATGGGGTCAAGATTGC 59.833 50.000 0.00 0.00 0.00 3.56
2809 2937 2.125326 CAGATGCACATGGGCTGGG 61.125 63.158 22.81 4.24 34.04 4.45
2814 2942 3.181484 CCACATAAACAGATGCACATGGG 60.181 47.826 0.00 0.00 0.00 4.00
2845 2974 7.157347 TCAGCATATACATCATCAGAAGTTCC 58.843 38.462 0.00 0.00 0.00 3.62
2861 2990 5.192176 TGCAACAGACCAAATCAGCATATA 58.808 37.500 0.00 0.00 0.00 0.86
2862 2991 4.018490 TGCAACAGACCAAATCAGCATAT 58.982 39.130 0.00 0.00 0.00 1.78
2935 3065 2.910479 TGGTATCCGATCGGCGCT 60.910 61.111 29.62 17.69 39.11 5.92
2977 3107 2.673368 AGTAGTAGCAGCGATGCAAAAC 59.327 45.455 29.24 21.25 37.25 2.43
2990 3120 3.604875 TTGCTTGGTGGTAGTAGTAGC 57.395 47.619 0.00 0.00 0.00 3.58
3028 3164 2.093021 AGCTCTCATTTCCTCTGCCTTC 60.093 50.000 0.00 0.00 0.00 3.46
3083 3219 9.706691 TTTCTCAGTACTGAATAGTTACCAAAG 57.293 33.333 25.14 9.81 39.39 2.77
3113 3249 1.016627 GCAACTGACAAGCACACTGA 58.983 50.000 0.00 0.00 0.00 3.41
3196 3332 3.056821 TGGTGGTCTGATAACGAAGACAG 60.057 47.826 5.29 0.00 43.81 3.51
3222 3358 5.066246 GGGATATGTACATAGCGAGGTAGAC 59.934 48.000 21.44 7.82 30.87 2.59
3268 3405 7.801716 TCAGAAAATGCAACAGTAGTAAGTT 57.198 32.000 0.00 0.00 0.00 2.66
3269 3406 7.880195 AGATCAGAAAATGCAACAGTAGTAAGT 59.120 33.333 0.00 0.00 0.00 2.24
3273 3410 5.106396 GCAGATCAGAAAATGCAACAGTAGT 60.106 40.000 0.00 0.00 38.54 2.73
3311 3448 2.135139 TGCGTTCAGTCAAGCTACAAG 58.865 47.619 0.00 0.00 0.00 3.16
3316 3453 2.221169 TCAATTGCGTTCAGTCAAGCT 58.779 42.857 0.00 0.00 0.00 3.74
3337 3474 1.757699 GCCCGACTATGAGGAAAGACT 59.242 52.381 0.00 0.00 0.00 3.24
3402 3559 2.889578 CGAGGTTTTCGGTCGTTCA 58.110 52.632 0.00 0.00 45.54 3.18
3411 3568 2.803956 TGATTGGACGAACGAGGTTTTC 59.196 45.455 0.14 0.00 0.00 2.29
3425 3586 1.349357 TGTGACCGGTCAATGATTGGA 59.651 47.619 37.75 10.31 41.85 3.53
3428 3589 4.522405 TGATTTTGTGACCGGTCAATGATT 59.478 37.500 37.75 22.38 41.85 2.57
3477 3649 0.608035 TTGGAAGATGCCGGACAACC 60.608 55.000 5.05 6.71 0.00 3.77
3478 3650 1.068541 GTTTGGAAGATGCCGGACAAC 60.069 52.381 5.05 1.21 0.00 3.32
3479 3651 1.243902 GTTTGGAAGATGCCGGACAA 58.756 50.000 5.05 0.00 0.00 3.18
3481 3653 1.313091 GGGTTTGGAAGATGCCGGAC 61.313 60.000 5.05 0.00 0.00 4.79
3482 3654 1.001393 GGGTTTGGAAGATGCCGGA 60.001 57.895 5.05 0.00 0.00 5.14
3484 3656 2.406616 CGGGGTTTGGAAGATGCCG 61.407 63.158 0.00 0.00 0.00 5.69
3485 3657 2.710902 GCGGGGTTTGGAAGATGCC 61.711 63.158 0.00 0.00 0.00 4.40
3486 3658 1.322538 ATGCGGGGTTTGGAAGATGC 61.323 55.000 0.00 0.00 0.00 3.91
3487 3659 2.051334 TATGCGGGGTTTGGAAGATG 57.949 50.000 0.00 0.00 0.00 2.90
3488 3660 2.443255 AGATATGCGGGGTTTGGAAGAT 59.557 45.455 0.00 0.00 0.00 2.40
3489 3661 1.843851 AGATATGCGGGGTTTGGAAGA 59.156 47.619 0.00 0.00 0.00 2.87
3490 3662 2.348411 AGATATGCGGGGTTTGGAAG 57.652 50.000 0.00 0.00 0.00 3.46
3493 3665 3.007940 TCTCATAGATATGCGGGGTTTGG 59.992 47.826 0.00 0.00 33.76 3.28
3494 3666 4.248859 CTCTCATAGATATGCGGGGTTTG 58.751 47.826 0.00 0.00 33.76 2.93
3515 3687 3.194542 CGCTAGGCCTTCTAATATCTGCT 59.805 47.826 12.58 0.00 0.00 4.24
3535 3707 0.530650 ATCCGACATGATGGACACGC 60.531 55.000 11.89 0.00 37.02 5.34
3538 3710 0.540923 TGCATCCGACATGATGGACA 59.459 50.000 11.89 5.35 41.96 4.02
3555 3727 1.456331 ATGGGCCAGGTTATGCTGC 60.456 57.895 13.78 0.00 0.00 5.25
3573 3745 0.898789 GGAGTGACAAGACTCGGGGA 60.899 60.000 0.00 0.00 42.97 4.81
3577 3749 2.608261 GGAAGTGGAGTGACAAGACTCG 60.608 54.545 0.00 0.00 42.97 4.18
3578 3750 2.630580 AGGAAGTGGAGTGACAAGACTC 59.369 50.000 0.00 0.00 41.55 3.36
3580 3752 2.630580 AGAGGAAGTGGAGTGACAAGAC 59.369 50.000 0.00 0.00 0.00 3.01
3581 3753 2.894126 GAGAGGAAGTGGAGTGACAAGA 59.106 50.000 0.00 0.00 0.00 3.02
3586 3765 1.261480 GCAGAGAGGAAGTGGAGTGA 58.739 55.000 0.00 0.00 0.00 3.41
3607 3786 3.837146 GAGCTATGATTGGATCAGAGGGA 59.163 47.826 12.78 0.00 46.03 4.20
3613 3792 5.163374 CCGGATATGAGCTATGATTGGATCA 60.163 44.000 0.00 0.00 44.55 2.92
3706 3895 1.450669 GGAGCGCGGGGTAAATTCA 60.451 57.895 8.83 0.00 0.00 2.57
3741 4149 1.952266 GATTTGGACGACACCGCGAC 61.952 60.000 8.23 0.00 39.95 5.19
3768 4176 1.153353 GCAGTGCTTGCGTTTACCTA 58.847 50.000 8.18 0.00 44.09 3.08
3844 4253 0.537143 TCCTTGCATGGTGGACACAC 60.537 55.000 17.54 0.00 46.97 3.82
3905 4319 2.046217 GGCCTCCGAACCCTTGTC 60.046 66.667 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.