Multiple sequence alignment - TraesCS2B01G458800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G458800 chr2B 100.000 5966 0 0 1 5966 653599175 653593210 0.000000e+00 11018.0
1 TraesCS2B01G458800 chr2B 91.139 158 7 7 683 838 137066960 137067112 2.180000e-49 207.0
2 TraesCS2B01G458800 chr2D 91.434 3654 180 50 897 4508 546815349 546811787 0.000000e+00 4891.0
3 TraesCS2B01G458800 chr2D 95.203 2543 81 11 916 3426 546688191 546685658 0.000000e+00 3982.0
4 TraesCS2B01G458800 chr2D 94.099 1576 66 12 3439 5008 546685617 546684063 0.000000e+00 2370.0
5 TraesCS2B01G458800 chr2D 94.538 1190 50 6 4505 5686 546809037 546807855 0.000000e+00 1823.0
6 TraesCS2B01G458800 chr2D 88.816 304 29 4 1 301 546816148 546815847 9.450000e-98 368.0
7 TraesCS2B01G458800 chr2D 86.879 282 19 6 5659 5939 546807909 546807645 3.490000e-77 300.0
8 TraesCS2B01G458800 chr2D 85.043 234 21 7 5065 5286 546684064 546683833 6.020000e-55 226.0
9 TraesCS2B01G458800 chr2D 86.429 140 13 5 5297 5435 546683736 546683602 1.340000e-31 148.0
10 TraesCS2B01G458800 chr2D 96.970 33 1 0 5460 5492 546683597 546683565 8.350000e-04 56.5
11 TraesCS2B01G458800 chr2A 89.234 2768 174 48 2586 5286 689756891 689759601 0.000000e+00 3347.0
12 TraesCS2B01G458800 chr2A 91.715 1726 77 24 905 2601 689753779 689755467 0.000000e+00 2335.0
13 TraesCS2B01G458800 chr2A 80.615 423 28 20 5285 5656 689759682 689760101 1.640000e-70 278.0
14 TraesCS2B01G458800 chr2A 87.019 208 20 6 5686 5890 689760077 689760280 1.670000e-55 228.0
15 TraesCS2B01G458800 chr2A 78.099 242 32 12 5416 5639 689803612 689803850 3.750000e-27 134.0
16 TraesCS2B01G458800 chr7D 84.959 851 84 20 1429 2261 72328698 72329522 0.000000e+00 822.0
17 TraesCS2B01G458800 chr7D 91.139 158 7 7 683 838 611940690 611940842 2.180000e-49 207.0
18 TraesCS2B01G458800 chr3A 84.250 673 77 12 1605 2261 152724844 152724185 3.920000e-176 628.0
19 TraesCS2B01G458800 chr3A 89.011 182 15 5 683 863 188567352 188567529 2.800000e-53 220.0
20 TraesCS2B01G458800 chr3A 91.250 160 6 7 683 838 725037972 725038127 1.680000e-50 211.0
21 TraesCS2B01G458800 chr4A 81.199 851 94 31 1429 2261 8930668 8929866 5.080000e-175 625.0
22 TraesCS2B01G458800 chr4A 86.641 262 29 5 44 301 32967105 32966846 9.790000e-73 285.0
23 TraesCS2B01G458800 chr7B 83.402 482 49 13 1435 1903 349588339 349587876 9.250000e-113 418.0
24 TraesCS2B01G458800 chr7B 86.282 277 27 2 1573 1839 365341523 365341798 2.100000e-74 291.0
25 TraesCS2B01G458800 chr7B 92.763 152 5 6 686 834 230294764 230294616 1.300000e-51 215.0
26 TraesCS2B01G458800 chr7B 86.806 144 19 0 2286 2429 349587865 349587722 1.720000e-35 161.0
27 TraesCS2B01G458800 chr4B 82.996 494 49 16 1435 1914 314827615 314827143 1.200000e-111 414.0
28 TraesCS2B01G458800 chr4B 83.094 278 33 3 1575 1842 514540812 514540539 2.150000e-59 241.0
29 TraesCS2B01G458800 chr5B 86.957 276 25 2 1577 1842 636520727 636521001 3.490000e-77 300.0
30 TraesCS2B01G458800 chr3B 82.527 372 30 16 1431 1788 72706351 72706001 1.630000e-75 294.0
31 TraesCS2B01G458800 chr6B 85.971 278 28 3 1575 1842 630113757 630113481 2.720000e-73 287.0
32 TraesCS2B01G458800 chr6B 85.612 278 28 3 1575 1842 630079906 630079631 1.270000e-71 281.0
33 TraesCS2B01G458800 chr4D 93.038 158 5 6 683 838 458888849 458888696 6.020000e-55 226.0
34 TraesCS2B01G458800 chr6A 90.058 171 12 5 683 852 511140985 511140819 3.620000e-52 217.0
35 TraesCS2B01G458800 chr3D 88.172 186 14 7 675 857 569244423 569244603 1.300000e-51 215.0
36 TraesCS2B01G458800 chr7A 89.759 166 9 8 676 838 648121515 648121355 7.840000e-49 206.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G458800 chr2B 653593210 653599175 5965 True 11018.0 11018 100.00000 1 5966 1 chr2B.!!$R1 5965
1 TraesCS2B01G458800 chr2D 546807645 546816148 8503 True 1845.5 4891 90.41675 1 5939 4 chr2D.!!$R2 5938
2 TraesCS2B01G458800 chr2D 546683565 546688191 4626 True 1356.5 3982 91.54880 916 5492 5 chr2D.!!$R1 4576
3 TraesCS2B01G458800 chr2A 689753779 689760280 6501 False 1547.0 3347 87.14575 905 5890 4 chr2A.!!$F2 4985
4 TraesCS2B01G458800 chr7D 72328698 72329522 824 False 822.0 822 84.95900 1429 2261 1 chr7D.!!$F1 832
5 TraesCS2B01G458800 chr3A 152724185 152724844 659 True 628.0 628 84.25000 1605 2261 1 chr3A.!!$R1 656
6 TraesCS2B01G458800 chr4A 8929866 8930668 802 True 625.0 625 81.19900 1429 2261 1 chr4A.!!$R1 832
7 TraesCS2B01G458800 chr7B 349587722 349588339 617 True 289.5 418 85.10400 1435 2429 2 chr7B.!!$R2 994


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
622 710 0.031616 AGAAGGGCTAGTGGAGGGAG 60.032 60.000 0.0 0.0 0.00 4.30 F
624 712 0.031616 AAGGGCTAGTGGAGGGAGAG 60.032 60.000 0.0 0.0 0.00 3.20 F
954 1079 0.107654 CCGGTGTTTCCTCCTCATCC 60.108 60.000 0.0 0.0 0.00 3.51 F
1546 1685 0.319986 GCGAAGGCTAGGATGTAGGC 60.320 60.000 0.0 0.0 40.02 3.93 F
2919 4539 1.203013 TCTCTGTCCCTCACTTTCCGA 60.203 52.381 0.0 0.0 0.00 4.55 F
3992 5679 0.111089 GTTCAGCTTCTGCACGAACG 60.111 55.000 0.0 0.0 40.96 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1652 1802 1.064240 AGCATTCACATCTCATGGCCA 60.064 47.619 8.56 8.56 33.60 5.36 R
1945 2104 1.076485 ATCCATGTCCTTGCCCAGC 60.076 57.895 0.00 0.00 0.00 4.85 R
2360 2524 1.106285 GCATCCCAACCAGCCTAAAG 58.894 55.000 0.00 0.00 0.00 1.85 R
3181 4828 1.681264 ACAGCCAAGCAGGTTAACAAC 59.319 47.619 8.10 0.00 40.61 3.32 R
4492 6192 1.067635 GTGGCCCATAGTGCAAACAAG 60.068 52.381 0.00 0.00 0.00 3.16 R
5662 10288 0.038159 CTTCGACAAGCTCCGGTTCT 60.038 55.000 0.00 0.00 0.00 3.01 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.742053 ACACGGTGTTGATTACATGAGC 59.258 45.455 8.21 0.00 39.39 4.26
28 29 4.811024 ACGGTGTTGATTACATGAGCATAG 59.189 41.667 0.00 0.00 39.39 2.23
32 33 7.062722 CGGTGTTGATTACATGAGCATAGATAG 59.937 40.741 0.00 0.00 39.39 2.08
79 80 9.950496 AACCTATATAGTCCTAAGCAATGATTG 57.050 33.333 8.92 0.00 0.00 2.67
90 91 4.574674 AGCAATGATTGGTTCTGGTCTA 57.425 40.909 3.70 0.00 38.40 2.59
129 130 3.452474 GGACACGAGATGAAGAAGATGG 58.548 50.000 0.00 0.00 0.00 3.51
159 160 1.525442 GGGGTAGGGACGTCATTGG 59.475 63.158 18.91 0.00 0.00 3.16
170 173 4.202284 GGGACGTCATTGGGTAGCTTATTA 60.202 45.833 18.91 0.00 0.00 0.98
173 176 6.485648 GGACGTCATTGGGTAGCTTATTAAAT 59.514 38.462 18.91 0.00 0.00 1.40
177 180 7.660208 CGTCATTGGGTAGCTTATTAAATAGGT 59.340 37.037 0.00 0.00 0.00 3.08
178 181 9.000486 GTCATTGGGTAGCTTATTAAATAGGTC 58.000 37.037 0.00 0.00 0.00 3.85
185 188 6.592207 AGCTTATTAAATAGGTCCAGGGTT 57.408 37.500 0.00 0.00 0.00 4.11
194 197 2.929301 AGGTCCAGGGTTAGGATTGAA 58.071 47.619 0.00 0.00 37.52 2.69
195 198 2.846827 AGGTCCAGGGTTAGGATTGAAG 59.153 50.000 0.00 0.00 37.52 3.02
259 263 2.420058 AGGTTTGATTCCGATGGACC 57.580 50.000 0.00 0.00 0.00 4.46
260 264 1.916181 AGGTTTGATTCCGATGGACCT 59.084 47.619 0.00 0.00 0.00 3.85
264 268 4.258543 GTTTGATTCCGATGGACCTTACA 58.741 43.478 0.00 0.00 0.00 2.41
267 271 5.110814 TGATTCCGATGGACCTTACAAAT 57.889 39.130 0.00 0.00 0.00 2.32
270 274 7.113437 TGATTCCGATGGACCTTACAAATTTA 58.887 34.615 0.00 0.00 0.00 1.40
272 276 6.995511 TCCGATGGACCTTACAAATTTAAG 57.004 37.500 0.00 0.00 0.00 1.85
311 374 4.948341 TGCTATTGATACTAAGGCCGAA 57.052 40.909 0.00 0.00 0.00 4.30
316 379 1.406539 TGATACTAAGGCCGAACCGAC 59.593 52.381 0.00 0.00 46.52 4.79
318 381 0.676466 TACTAAGGCCGAACCGACGA 60.676 55.000 0.00 0.00 46.52 4.20
320 383 2.203972 CTAAGGCCGAACCGACGACA 62.204 60.000 0.00 0.00 46.52 4.35
322 385 4.353437 GGCCGAACCGACGACACT 62.353 66.667 0.00 0.00 35.09 3.55
324 387 2.333938 CCGAACCGACGACACTGT 59.666 61.111 0.00 0.00 35.09 3.55
327 390 1.266786 CGAACCGACGACACTGTGAC 61.267 60.000 15.86 7.56 35.09 3.67
330 393 1.440518 CCGACGACACTGTGACGAG 60.441 63.158 32.17 24.43 37.72 4.18
331 394 1.568025 CGACGACACTGTGACGAGA 59.432 57.895 32.17 0.00 37.72 4.04
332 395 0.451299 CGACGACACTGTGACGAGAG 60.451 60.000 32.17 20.22 37.72 3.20
361 424 2.034532 TGGTGTCGCCGACTAGGA 59.965 61.111 19.12 0.00 45.00 2.94
362 425 2.338015 TGGTGTCGCCGACTAGGAC 61.338 63.158 19.12 7.83 45.00 3.85
370 433 3.528370 CGACTAGGACGGGCTGGG 61.528 72.222 0.00 0.00 0.00 4.45
373 436 2.042843 CTAGGACGGGCTGGGAGT 60.043 66.667 0.00 0.00 0.00 3.85
376 439 4.083862 GGACGGGCTGGGAGTGAC 62.084 72.222 0.00 0.00 0.00 3.67
385 448 1.680522 CTGGGAGTGACCTGGATCCG 61.681 65.000 7.39 1.76 38.98 4.18
394 457 2.797278 CCTGGATCCGGGGAAGACG 61.797 68.421 29.94 4.02 38.78 4.18
397 460 2.582436 GATCCGGGGAAGACGCAA 59.418 61.111 0.00 0.00 0.00 4.85
400 463 4.367023 CCGGGGAAGACGCAACGA 62.367 66.667 0.00 0.00 0.00 3.85
404 467 2.370393 GGGAAGACGCAACGACGAC 61.370 63.158 0.00 0.00 36.70 4.34
405 468 2.704193 GGAAGACGCAACGACGACG 61.704 63.158 5.58 5.58 45.75 5.12
406 469 1.723542 GAAGACGCAACGACGACGA 60.724 57.895 15.32 0.00 42.66 4.20
407 470 1.917151 GAAGACGCAACGACGACGAC 61.917 60.000 15.32 3.02 42.66 4.34
414 477 3.844995 AACGACGACGACGACACCG 62.845 63.158 25.15 13.10 42.66 4.94
415 478 4.063230 CGACGACGACGACACCGA 62.063 66.667 15.32 0.00 42.66 4.69
416 479 2.202146 GACGACGACGACACCGAG 60.202 66.667 15.32 0.00 42.66 4.63
426 489 4.400251 ACACCGAGGGAGGGGAGG 62.400 72.222 0.00 0.00 38.30 4.30
437 500 1.622725 GGAGGGGAGGCTAAGACTTGA 60.623 57.143 0.00 0.00 0.00 3.02
438 501 2.403561 GAGGGGAGGCTAAGACTTGAT 58.596 52.381 0.00 0.00 0.00 2.57
439 502 3.577919 GAGGGGAGGCTAAGACTTGATA 58.422 50.000 0.00 0.00 0.00 2.15
443 506 4.202274 GGGGAGGCTAAGACTTGATAGTTC 60.202 50.000 0.00 0.00 33.84 3.01
454 518 2.364579 ATAGTTCGGGGTGCGGGA 60.365 61.111 0.00 0.00 0.00 5.14
469 533 2.750237 GGATGGGTTGTCGGTGCC 60.750 66.667 0.00 0.00 0.00 5.01
470 534 2.033448 GATGGGTTGTCGGTGCCA 59.967 61.111 0.00 0.00 0.00 4.92
471 535 1.602323 GATGGGTTGTCGGTGCCAA 60.602 57.895 0.00 0.00 0.00 4.52
484 548 2.351738 CGGTGCCAAAGAAAAGGATGAC 60.352 50.000 0.00 0.00 0.00 3.06
486 550 2.552315 GTGCCAAAGAAAAGGATGACGA 59.448 45.455 0.00 0.00 0.00 4.20
487 551 3.191371 GTGCCAAAGAAAAGGATGACGAT 59.809 43.478 0.00 0.00 0.00 3.73
490 554 4.096984 GCCAAAGAAAAGGATGACGATGAT 59.903 41.667 0.00 0.00 0.00 2.45
499 563 0.911769 ATGACGATGATGGTGGTGGT 59.088 50.000 0.00 0.00 0.00 4.16
503 567 1.909459 CGATGATGGTGGTGGTGGGA 61.909 60.000 0.00 0.00 0.00 4.37
505 569 0.549902 ATGATGGTGGTGGTGGGAGA 60.550 55.000 0.00 0.00 0.00 3.71
525 589 0.624795 AAGGGGGCCTAGAGGAAAGG 60.625 60.000 0.84 0.00 37.39 3.11
544 608 1.479323 GGTCGGGTAGTAGCAACATGA 59.521 52.381 0.00 0.00 0.00 3.07
593 681 3.199551 GCGGCAGCATTGGATTGA 58.800 55.556 3.18 0.00 44.35 2.57
594 682 1.065273 GCGGCAGCATTGGATTGAG 59.935 57.895 3.18 0.00 44.35 3.02
605 693 1.741028 TGGATTGAGTGGGTGGAAGA 58.259 50.000 0.00 0.00 0.00 2.87
607 695 2.040278 TGGATTGAGTGGGTGGAAGAAG 59.960 50.000 0.00 0.00 0.00 2.85
608 696 2.619074 GGATTGAGTGGGTGGAAGAAGG 60.619 54.545 0.00 0.00 0.00 3.46
609 697 0.771127 TTGAGTGGGTGGAAGAAGGG 59.229 55.000 0.00 0.00 0.00 3.95
610 698 1.002011 GAGTGGGTGGAAGAAGGGC 60.002 63.158 0.00 0.00 0.00 5.19
611 699 1.464198 AGTGGGTGGAAGAAGGGCT 60.464 57.895 0.00 0.00 0.00 5.19
612 700 0.178873 AGTGGGTGGAAGAAGGGCTA 60.179 55.000 0.00 0.00 0.00 3.93
614 702 0.178873 TGGGTGGAAGAAGGGCTAGT 60.179 55.000 0.00 0.00 0.00 2.57
618 706 1.208293 GTGGAAGAAGGGCTAGTGGAG 59.792 57.143 0.00 0.00 0.00 3.86
620 708 0.833949 GAAGAAGGGCTAGTGGAGGG 59.166 60.000 0.00 0.00 0.00 4.30
622 710 0.031616 AGAAGGGCTAGTGGAGGGAG 60.032 60.000 0.00 0.00 0.00 4.30
623 711 0.032017 GAAGGGCTAGTGGAGGGAGA 60.032 60.000 0.00 0.00 0.00 3.71
624 712 0.031616 AAGGGCTAGTGGAGGGAGAG 60.032 60.000 0.00 0.00 0.00 3.20
626 714 1.311747 GGCTAGTGGAGGGAGAGGT 59.688 63.158 0.00 0.00 0.00 3.85
627 715 0.325765 GGCTAGTGGAGGGAGAGGTT 60.326 60.000 0.00 0.00 0.00 3.50
628 716 1.063114 GGCTAGTGGAGGGAGAGGTTA 60.063 57.143 0.00 0.00 0.00 2.85
629 717 2.033372 GCTAGTGGAGGGAGAGGTTAC 58.967 57.143 0.00 0.00 0.00 2.50
630 718 2.623502 GCTAGTGGAGGGAGAGGTTACA 60.624 54.545 0.00 0.00 0.00 2.41
631 719 2.950990 AGTGGAGGGAGAGGTTACAT 57.049 50.000 0.00 0.00 0.00 2.29
632 720 2.472029 AGTGGAGGGAGAGGTTACATG 58.528 52.381 0.00 0.00 0.00 3.21
633 721 2.044492 AGTGGAGGGAGAGGTTACATGA 59.956 50.000 0.00 0.00 0.00 3.07
634 722 2.432510 GTGGAGGGAGAGGTTACATGAG 59.567 54.545 0.00 0.00 0.00 2.90
635 723 2.044492 TGGAGGGAGAGGTTACATGAGT 59.956 50.000 0.00 0.00 0.00 3.41
636 724 2.696187 GGAGGGAGAGGTTACATGAGTC 59.304 54.545 0.00 0.00 0.00 3.36
637 725 2.359531 GAGGGAGAGGTTACATGAGTCG 59.640 54.545 0.00 0.00 0.00 4.18
638 726 2.100989 GGGAGAGGTTACATGAGTCGT 58.899 52.381 0.00 0.00 0.00 4.34
639 727 2.496470 GGGAGAGGTTACATGAGTCGTT 59.504 50.000 0.00 0.00 0.00 3.85
640 728 3.512680 GGAGAGGTTACATGAGTCGTTG 58.487 50.000 0.00 0.00 0.00 4.10
641 729 3.192844 GGAGAGGTTACATGAGTCGTTGA 59.807 47.826 0.00 0.00 0.00 3.18
642 730 4.321750 GGAGAGGTTACATGAGTCGTTGAA 60.322 45.833 0.00 0.00 0.00 2.69
643 731 5.407407 AGAGGTTACATGAGTCGTTGAAT 57.593 39.130 0.00 0.00 0.00 2.57
644 732 5.794894 AGAGGTTACATGAGTCGTTGAATT 58.205 37.500 0.00 0.00 0.00 2.17
645 733 6.231211 AGAGGTTACATGAGTCGTTGAATTT 58.769 36.000 0.00 0.00 0.00 1.82
646 734 7.383687 AGAGGTTACATGAGTCGTTGAATTTA 58.616 34.615 0.00 0.00 0.00 1.40
647 735 7.876068 AGAGGTTACATGAGTCGTTGAATTTAA 59.124 33.333 0.00 0.00 0.00 1.52
648 736 8.385898 AGGTTACATGAGTCGTTGAATTTAAA 57.614 30.769 0.00 0.00 0.00 1.52
649 737 9.010029 AGGTTACATGAGTCGTTGAATTTAAAT 57.990 29.630 0.00 0.00 0.00 1.40
650 738 9.274065 GGTTACATGAGTCGTTGAATTTAAATC 57.726 33.333 0.00 0.00 0.00 2.17
651 739 8.985694 GTTACATGAGTCGTTGAATTTAAATCG 58.014 33.333 0.00 1.02 0.00 3.34
652 740 7.359262 ACATGAGTCGTTGAATTTAAATCGA 57.641 32.000 0.00 3.51 0.00 3.59
653 741 7.802738 ACATGAGTCGTTGAATTTAAATCGAA 58.197 30.769 10.26 0.78 0.00 3.71
654 742 7.744715 ACATGAGTCGTTGAATTTAAATCGAAC 59.255 33.333 10.26 10.29 0.00 3.95
655 743 6.293618 TGAGTCGTTGAATTTAAATCGAACG 58.706 36.000 24.84 24.84 37.98 3.95
656 744 5.614760 AGTCGTTGAATTTAAATCGAACGG 58.385 37.500 27.44 17.30 37.40 4.44
657 745 4.259046 GTCGTTGAATTTAAATCGAACGGC 59.741 41.667 27.44 25.20 37.40 5.68
658 746 4.152759 TCGTTGAATTTAAATCGAACGGCT 59.847 37.500 27.44 5.11 37.40 5.52
659 747 5.348179 TCGTTGAATTTAAATCGAACGGCTA 59.652 36.000 27.44 15.89 37.40 3.93
660 748 6.016718 CGTTGAATTTAAATCGAACGGCTAA 58.983 36.000 23.92 3.16 34.12 3.09
661 749 6.520447 CGTTGAATTTAAATCGAACGGCTAAA 59.480 34.615 23.92 0.00 34.12 1.85
662 750 7.059716 CGTTGAATTTAAATCGAACGGCTAAAA 59.940 33.333 23.92 0.00 34.12 1.52
663 751 8.692615 GTTGAATTTAAATCGAACGGCTAAAAA 58.307 29.630 0.10 0.00 0.00 1.94
716 804 4.616181 AAGTGATAGGCGTTAATTGTGC 57.384 40.909 0.00 0.00 0.00 4.57
717 805 2.607635 AGTGATAGGCGTTAATTGTGCG 59.392 45.455 0.00 0.00 0.00 5.34
718 806 2.350498 GTGATAGGCGTTAATTGTGCGT 59.650 45.455 0.00 0.00 0.00 5.24
719 807 3.004171 TGATAGGCGTTAATTGTGCGTT 58.996 40.909 0.00 0.00 0.00 4.84
720 808 3.437395 TGATAGGCGTTAATTGTGCGTTT 59.563 39.130 0.00 0.00 0.00 3.60
721 809 2.785713 AGGCGTTAATTGTGCGTTTT 57.214 40.000 0.00 0.00 0.00 2.43
722 810 2.389998 AGGCGTTAATTGTGCGTTTTG 58.610 42.857 0.00 0.00 0.00 2.44
723 811 1.136748 GGCGTTAATTGTGCGTTTTGC 60.137 47.619 0.00 0.00 46.70 3.68
724 812 1.136748 GCGTTAATTGTGCGTTTTGCC 60.137 47.619 0.00 0.00 45.60 4.52
725 813 2.120232 CGTTAATTGTGCGTTTTGCCA 58.880 42.857 0.00 0.00 45.60 4.92
726 814 2.097637 CGTTAATTGTGCGTTTTGCCAC 60.098 45.455 0.00 0.00 45.60 5.01
727 815 2.141535 TAATTGTGCGTTTTGCCACC 57.858 45.000 0.00 0.00 45.60 4.61
728 816 0.873743 AATTGTGCGTTTTGCCACCG 60.874 50.000 0.00 0.00 45.60 4.94
729 817 4.560856 TGTGCGTTTTGCCACCGC 62.561 61.111 0.00 0.00 45.60 5.68
732 820 4.279043 GCGTTTTGCCACCGCCTT 62.279 61.111 0.00 0.00 41.50 4.35
733 821 2.354539 CGTTTTGCCACCGCCTTG 60.355 61.111 0.00 0.00 0.00 3.61
734 822 2.661537 GTTTTGCCACCGCCTTGC 60.662 61.111 0.00 0.00 0.00 4.01
746 834 1.502190 GCCTTGCGCTTTACTGACC 59.498 57.895 9.73 0.00 0.00 4.02
747 835 1.234615 GCCTTGCGCTTTACTGACCA 61.235 55.000 9.73 0.00 0.00 4.02
748 836 1.234821 CCTTGCGCTTTACTGACCAA 58.765 50.000 9.73 0.00 0.00 3.67
749 837 1.606668 CCTTGCGCTTTACTGACCAAA 59.393 47.619 9.73 0.00 0.00 3.28
750 838 2.350772 CCTTGCGCTTTACTGACCAAAG 60.351 50.000 9.73 0.00 36.32 2.77
753 841 3.384702 GCTTTACTGACCAAAGCGC 57.615 52.632 0.00 0.00 45.88 5.92
754 842 0.591170 GCTTTACTGACCAAAGCGCA 59.409 50.000 11.47 0.00 45.88 6.09
755 843 1.200020 GCTTTACTGACCAAAGCGCAT 59.800 47.619 11.47 0.00 45.88 4.73
756 844 2.855180 CTTTACTGACCAAAGCGCATG 58.145 47.619 11.47 8.38 0.00 4.06
757 845 0.521291 TTACTGACCAAAGCGCATGC 59.479 50.000 11.47 7.91 43.24 4.06
771 859 2.693797 GCATGCTTATGCGCAGTTAT 57.306 45.000 18.32 0.10 44.10 1.89
772 860 2.313234 GCATGCTTATGCGCAGTTATG 58.687 47.619 18.32 15.92 44.10 1.90
794 882 6.772770 TGCACATATTAATGCGTAATACGT 57.227 33.333 14.57 0.00 45.13 3.57
795 883 7.179927 TGCACATATTAATGCGTAATACGTT 57.820 32.000 14.57 4.43 45.13 3.99
796 884 7.631822 TGCACATATTAATGCGTAATACGTTT 58.368 30.769 14.57 10.71 45.13 3.60
797 885 8.123575 TGCACATATTAATGCGTAATACGTTTT 58.876 29.630 14.57 10.39 45.13 2.43
798 886 8.406716 GCACATATTAATGCGTAATACGTTTTG 58.593 33.333 14.57 6.59 44.73 2.44
799 887 8.406716 CACATATTAATGCGTAATACGTTTTGC 58.593 33.333 14.57 0.00 44.73 3.68
800 888 7.588488 ACATATTAATGCGTAATACGTTTTGCC 59.412 33.333 14.57 0.00 44.73 4.52
801 889 3.833545 AATGCGTAATACGTTTTGCCA 57.166 38.095 14.57 3.02 44.73 4.92
802 890 3.833545 ATGCGTAATACGTTTTGCCAA 57.166 38.095 14.57 0.00 44.73 4.52
803 891 2.918616 TGCGTAATACGTTTTGCCAAC 58.081 42.857 14.57 0.00 44.73 3.77
804 892 1.899971 GCGTAATACGTTTTGCCAACG 59.100 47.619 14.57 14.81 44.73 4.10
805 893 1.899971 CGTAATACGTTTTGCCAACGC 59.100 47.619 15.99 1.74 46.58 4.84
806 894 2.244251 GTAATACGTTTTGCCAACGCC 58.756 47.619 15.99 0.00 46.58 5.68
807 895 0.955905 AATACGTTTTGCCAACGCCT 59.044 45.000 15.99 3.51 46.58 5.52
808 896 1.810959 ATACGTTTTGCCAACGCCTA 58.189 45.000 15.99 5.05 46.58 3.93
809 897 1.149987 TACGTTTTGCCAACGCCTAG 58.850 50.000 15.99 0.00 46.58 3.02
810 898 0.533308 ACGTTTTGCCAACGCCTAGA 60.533 50.000 15.99 0.00 46.58 2.43
811 899 0.165944 CGTTTTGCCAACGCCTAGAG 59.834 55.000 5.44 0.00 36.82 2.43
812 900 0.109735 GTTTTGCCAACGCCTAGAGC 60.110 55.000 0.00 0.00 38.52 4.09
813 901 1.241315 TTTTGCCAACGCCTAGAGCC 61.241 55.000 0.00 0.00 38.78 4.70
814 902 2.124507 TTTGCCAACGCCTAGAGCCT 62.125 55.000 0.00 0.00 38.78 4.58
815 903 1.261938 TTGCCAACGCCTAGAGCCTA 61.262 55.000 0.00 0.00 38.78 3.93
816 904 1.261938 TGCCAACGCCTAGAGCCTAA 61.262 55.000 0.00 0.00 38.78 2.69
817 905 0.530870 GCCAACGCCTAGAGCCTAAG 60.531 60.000 0.00 0.00 38.78 2.18
818 906 0.530870 CCAACGCCTAGAGCCTAAGC 60.531 60.000 0.00 0.00 38.78 3.09
820 908 2.355244 CGCCTAGAGCCTAAGCGC 60.355 66.667 0.00 0.00 46.67 5.92
821 909 2.355244 GCCTAGAGCCTAAGCGCG 60.355 66.667 0.00 0.00 44.54 6.86
822 910 2.355244 CCTAGAGCCTAAGCGCGC 60.355 66.667 26.66 26.66 44.54 6.86
823 911 2.727647 CTAGAGCCTAAGCGCGCG 60.728 66.667 28.44 28.44 44.54 6.86
824 912 4.925576 TAGAGCCTAAGCGCGCGC 62.926 66.667 45.10 45.10 44.54 6.86
836 924 4.856607 GCGCGCTTAGGCTCGTCT 62.857 66.667 26.67 0.00 46.64 4.18
837 925 2.202623 CGCGCTTAGGCTCGTCTT 60.203 61.111 5.56 0.00 41.09 3.01
838 926 1.805945 CGCGCTTAGGCTCGTCTTT 60.806 57.895 5.56 0.00 41.09 2.52
839 927 1.352156 CGCGCTTAGGCTCGTCTTTT 61.352 55.000 5.56 0.00 41.09 2.27
840 928 0.796927 GCGCTTAGGCTCGTCTTTTT 59.203 50.000 0.00 0.00 36.09 1.94
951 1076 2.111999 CTGCCGGTGTTTCCTCCTCA 62.112 60.000 1.90 0.00 0.00 3.86
954 1079 0.107654 CCGGTGTTTCCTCCTCATCC 60.108 60.000 0.00 0.00 0.00 3.51
968 1093 3.321648 ATCCTGTCACGGCAGCCA 61.322 61.111 13.30 0.00 35.28 4.75
970 1095 4.320456 CCTGTCACGGCAGCCAGT 62.320 66.667 13.30 7.71 35.28 4.00
984 1120 1.069823 AGCCAGTCAGTCAGTGAAGTG 59.930 52.381 0.00 0.00 36.74 3.16
1357 1494 0.750850 CGTCACCGAGGTATTGGGAT 59.249 55.000 0.00 0.00 33.68 3.85
1358 1495 1.138266 CGTCACCGAGGTATTGGGATT 59.862 52.381 0.00 0.00 33.68 3.01
1369 1506 0.970427 ATTGGGATTTTTCCGGCGCT 60.970 50.000 7.64 0.00 0.00 5.92
1386 1523 2.350484 GCGCTTGGTTGTTTCCTCTAAC 60.350 50.000 0.00 0.00 0.00 2.34
1419 1556 5.047802 GTGAGGTTGTGAATTGGTGAATGAT 60.048 40.000 0.00 0.00 0.00 2.45
1442 1579 1.826385 CATTCTTGGGTGTGGAGTCC 58.174 55.000 0.73 0.73 0.00 3.85
1546 1685 0.319986 GCGAAGGCTAGGATGTAGGC 60.320 60.000 0.00 0.00 40.02 3.93
1736 1886 3.200483 GAGGTTGTACGGTTTGTTCACT 58.800 45.455 0.00 0.00 0.00 3.41
1769 1920 2.499685 GAATGTCGGGTAGGCGCT 59.500 61.111 7.64 0.00 0.00 5.92
2441 2605 7.768120 TGGCAGTTCAGTTGATTAATTGTTTTT 59.232 29.630 0.00 0.00 0.00 1.94
2495 2659 7.290857 TCGACAATAAAAGAACACATAGCTC 57.709 36.000 0.00 0.00 0.00 4.09
2862 4482 2.766263 TCACTGCAGGGTTCTGTATAGG 59.234 50.000 17.28 0.00 42.78 2.57
2863 4483 2.119495 ACTGCAGGGTTCTGTATAGGG 58.881 52.381 19.93 0.00 42.78 3.53
2864 4484 2.119495 CTGCAGGGTTCTGTATAGGGT 58.881 52.381 5.57 0.00 42.78 4.34
2865 4485 1.837439 TGCAGGGTTCTGTATAGGGTG 59.163 52.381 0.00 0.00 42.78 4.61
2866 4486 1.838077 GCAGGGTTCTGTATAGGGTGT 59.162 52.381 0.00 0.00 42.78 4.16
2867 4487 2.238898 GCAGGGTTCTGTATAGGGTGTT 59.761 50.000 0.00 0.00 42.78 3.32
2868 4488 3.308188 GCAGGGTTCTGTATAGGGTGTTT 60.308 47.826 0.00 0.00 42.78 2.83
2869 4489 4.080751 GCAGGGTTCTGTATAGGGTGTTTA 60.081 45.833 0.00 0.00 42.78 2.01
2870 4490 5.397559 GCAGGGTTCTGTATAGGGTGTTTAT 60.398 44.000 0.00 0.00 42.78 1.40
2871 4491 6.183361 GCAGGGTTCTGTATAGGGTGTTTATA 60.183 42.308 0.00 0.00 42.78 0.98
2872 4492 7.474364 GCAGGGTTCTGTATAGGGTGTTTATAT 60.474 40.741 0.00 0.00 42.78 0.86
2873 4493 9.096823 CAGGGTTCTGTATAGGGTGTTTATATA 57.903 37.037 0.00 0.00 36.30 0.86
2874 4494 9.854303 AGGGTTCTGTATAGGGTGTTTATATAT 57.146 33.333 0.00 0.00 0.00 0.86
2919 4539 1.203013 TCTCTGTCCCTCACTTTCCGA 60.203 52.381 0.00 0.00 0.00 4.55
3102 4749 8.942338 TTTCTTATACAGTACATGGCTACAAG 57.058 34.615 0.00 0.00 0.00 3.16
3181 4828 7.268199 TCAATCTGGCTGCTTTGATATTAAG 57.732 36.000 0.00 0.00 0.00 1.85
3208 4856 0.319297 CCTGCTTGGCTGTTTTGCTC 60.319 55.000 0.00 0.00 0.00 4.26
3251 4899 5.063880 AGTTCAGAAACTTGCGGATTACTT 58.936 37.500 0.00 0.00 43.28 2.24
3252 4900 6.228258 AGTTCAGAAACTTGCGGATTACTTA 58.772 36.000 0.00 0.00 43.28 2.24
3316 4969 4.223477 AGTTTGCCAATTGCCACATCTAAT 59.777 37.500 0.00 0.00 40.16 1.73
3436 5092 6.811665 GGTATACATTGCTTTCCTTTCCAAAC 59.188 38.462 5.01 0.00 0.00 2.93
3455 5139 1.493022 ACCAAACTGTAAGCACTCCCA 59.507 47.619 0.00 0.00 37.60 4.37
3472 5156 5.069781 CACTCCCAAAATACCAAAAGTTCCA 59.930 40.000 0.00 0.00 0.00 3.53
3552 5236 8.751242 TGGAGCATTTTTATTTCAGAATCATGA 58.249 29.630 0.00 0.00 0.00 3.07
3581 5265 8.559301 ATTGATCCCAACTTCATATGGAACACC 61.559 40.741 2.13 0.00 39.12 4.16
3637 5321 3.195396 TGCAATGATTTGGGGTTTCTAGC 59.805 43.478 0.00 0.00 33.22 3.42
3802 5488 9.035890 TCTGGATGATAGAATCGTGGTTATATT 57.964 33.333 0.00 0.00 0.00 1.28
3992 5679 0.111089 GTTCAGCTTCTGCACGAACG 60.111 55.000 0.00 0.00 40.96 3.95
4026 5713 2.957060 TCGTCTCCGACTTGATGGT 58.043 52.632 0.00 0.00 38.40 3.55
4386 6075 7.581213 TTGATTTGTGATGGTTACAAGAGTT 57.419 32.000 0.00 0.00 39.03 3.01
4482 6182 2.603075 AGCCTTTTAAGTGATGGCCA 57.397 45.000 8.56 8.56 44.19 5.36
4483 6183 2.888212 AGCCTTTTAAGTGATGGCCAA 58.112 42.857 10.96 0.00 44.19 4.52
4492 6192 0.807496 GTGATGGCCAAGAAGCTCAC 59.193 55.000 10.96 14.75 0.00 3.51
4515 8968 2.291217 TGTTTGCACTATGGGCCACATA 60.291 45.455 9.28 9.35 41.03 2.29
4629 9082 8.394121 GTCTAATGACTTTGACCTGAATCAATC 58.606 37.037 0.00 0.00 39.94 2.67
4638 9091 4.523943 TGACCTGAATCAATCAAGGTTTGG 59.476 41.667 0.00 0.00 38.72 3.28
4648 9101 1.071071 TCAAGGTTTGGTACACCTCCG 59.929 52.381 3.97 0.18 44.48 4.63
4655 9108 4.510571 GTTTGGTACACCTCCGTATTGAT 58.489 43.478 0.00 0.00 39.29 2.57
4803 9256 6.233434 TCTTGCTTGTTCAGATCTTATGTGT 58.767 36.000 0.00 0.00 0.00 3.72
4868 9321 1.661341 CCTTACTGTGAGAGGCATGC 58.339 55.000 9.90 9.90 0.00 4.06
4881 9334 3.118884 AGAGGCATGCAAATTTGATGGTC 60.119 43.478 22.31 10.60 0.00 4.02
4957 9410 2.949644 TCGCACGAGAATCAGGAAGATA 59.050 45.455 0.00 0.00 35.39 1.98
5111 9565 7.011669 CGTATCATGATGCTGAATTATATGCCA 59.988 37.037 18.72 0.00 0.00 4.92
5140 9597 5.626543 CCATCAAATGAAGCGGAATATTTCG 59.373 40.000 11.99 11.99 0.00 3.46
5144 9601 2.285083 TGAAGCGGAATATTTCGTGGG 58.715 47.619 17.25 0.00 0.00 4.61
5165 9622 3.262420 GCTCGTCCAAGTGATTGTATGT 58.738 45.455 0.00 0.00 0.00 2.29
5173 9631 5.825151 TCCAAGTGATTGTATGTGTTGACAA 59.175 36.000 0.00 0.00 39.74 3.18
5219 9694 7.148355 CCTTAATTTTGCAGGCATTTTGAAT 57.852 32.000 0.00 0.00 0.00 2.57
5261 9743 4.331968 TGACACCATTATTCACCTTCACC 58.668 43.478 0.00 0.00 0.00 4.02
5495 10089 2.186384 CGAGAGGAAGCTGCAGGG 59.814 66.667 17.12 0.00 0.00 4.45
5656 10282 0.608640 AACCGGAGCTTGTCGAAGAT 59.391 50.000 9.46 0.00 40.67 2.40
5660 10286 1.923204 CGGAGCTTGTCGAAGATGAAG 59.077 52.381 0.00 0.00 40.67 3.02
5661 10287 2.275318 GGAGCTTGTCGAAGATGAAGG 58.725 52.381 0.00 0.00 40.67 3.46
5662 10288 2.093973 GGAGCTTGTCGAAGATGAAGGA 60.094 50.000 0.00 0.00 40.67 3.36
5664 10290 2.828520 AGCTTGTCGAAGATGAAGGAGA 59.171 45.455 0.00 0.00 40.67 3.71
5665 10291 3.259374 AGCTTGTCGAAGATGAAGGAGAA 59.741 43.478 0.00 0.00 40.67 2.87
5666 10292 3.369451 GCTTGTCGAAGATGAAGGAGAAC 59.631 47.826 0.00 0.00 40.67 3.01
5667 10293 3.594603 TGTCGAAGATGAAGGAGAACC 57.405 47.619 0.00 0.00 40.67 3.62
5668 10294 2.094700 TGTCGAAGATGAAGGAGAACCG 60.095 50.000 0.00 0.00 40.67 4.44
5669 10295 1.476891 TCGAAGATGAAGGAGAACCGG 59.523 52.381 0.00 0.00 41.83 5.28
5670 10296 1.476891 CGAAGATGAAGGAGAACCGGA 59.523 52.381 9.46 0.00 41.83 5.14
5671 10297 2.480416 CGAAGATGAAGGAGAACCGGAG 60.480 54.545 9.46 0.00 41.83 4.63
5672 10298 0.827368 AGATGAAGGAGAACCGGAGC 59.173 55.000 9.46 0.00 41.83 4.70
5673 10299 0.827368 GATGAAGGAGAACCGGAGCT 59.173 55.000 9.46 4.04 41.83 4.09
5674 10300 1.208293 GATGAAGGAGAACCGGAGCTT 59.792 52.381 9.46 0.00 41.83 3.74
5675 10301 0.321671 TGAAGGAGAACCGGAGCTTG 59.678 55.000 9.46 0.00 41.83 4.01
5676 10302 0.321996 GAAGGAGAACCGGAGCTTGT 59.678 55.000 9.46 0.00 41.83 3.16
5677 10303 0.321996 AAGGAGAACCGGAGCTTGTC 59.678 55.000 9.46 0.00 41.83 3.18
5678 10304 1.446272 GGAGAACCGGAGCTTGTCG 60.446 63.158 9.46 0.00 0.00 4.35
5679 10305 1.585006 GAGAACCGGAGCTTGTCGA 59.415 57.895 9.46 0.00 0.00 4.20
5680 10306 0.038526 GAGAACCGGAGCTTGTCGAA 60.039 55.000 9.46 0.00 0.00 3.71
5681 10307 0.038159 AGAACCGGAGCTTGTCGAAG 60.038 55.000 9.46 0.00 0.00 3.79
5682 10308 0.038526 GAACCGGAGCTTGTCGAAGA 60.039 55.000 9.46 0.00 0.00 2.87
5683 10309 0.608640 AACCGGAGCTTGTCGAAGAT 59.391 50.000 9.46 0.00 40.67 2.40
5684 10310 0.108615 ACCGGAGCTTGTCGAAGATG 60.109 55.000 9.46 0.00 40.67 2.90
5685 10311 0.173481 CCGGAGCTTGTCGAAGATGA 59.827 55.000 0.00 0.00 40.67 2.92
5686 10312 1.404181 CCGGAGCTTGTCGAAGATGAA 60.404 52.381 0.00 0.00 40.67 2.57
5687 10313 1.923204 CGGAGCTTGTCGAAGATGAAG 59.077 52.381 0.00 0.00 40.67 3.02
5715 10341 1.546476 GGAGCTTGTCGAAGAGGAGAA 59.454 52.381 0.00 0.00 36.95 2.87
5717 10343 1.964223 AGCTTGTCGAAGAGGAGAACA 59.036 47.619 0.00 0.00 36.95 3.18
5727 10353 1.816863 GAGGAGAACACACGGAGGCA 61.817 60.000 0.00 0.00 0.00 4.75
5728 10354 1.374758 GGAGAACACACGGAGGCAG 60.375 63.158 0.00 0.00 0.00 4.85
5729 10355 1.666011 GAGAACACACGGAGGCAGA 59.334 57.895 0.00 0.00 0.00 4.26
5730 10356 0.389166 GAGAACACACGGAGGCAGAG 60.389 60.000 0.00 0.00 0.00 3.35
5731 10357 0.827925 AGAACACACGGAGGCAGAGA 60.828 55.000 0.00 0.00 0.00 3.10
5732 10358 0.033504 GAACACACGGAGGCAGAGAA 59.966 55.000 0.00 0.00 0.00 2.87
5733 10359 0.249911 AACACACGGAGGCAGAGAAC 60.250 55.000 0.00 0.00 0.00 3.01
5734 10360 1.115930 ACACACGGAGGCAGAGAACT 61.116 55.000 0.00 0.00 0.00 3.01
5735 10361 0.668706 CACACGGAGGCAGAGAACTG 60.669 60.000 0.00 0.00 45.91 3.16
5736 10362 0.827925 ACACGGAGGCAGAGAACTGA 60.828 55.000 0.00 0.00 46.03 3.41
5750 10376 3.426615 AGAACTGAGAGAAGATGACGGT 58.573 45.455 0.00 0.00 0.00 4.83
5755 10381 2.290960 TGAGAGAAGATGACGGTGAGGA 60.291 50.000 0.00 0.00 0.00 3.71
5831 10459 2.060383 AGAGCGCTAGGACATGGCA 61.060 57.895 11.50 0.00 34.43 4.92
5872 10501 2.330372 CCACGAGGACGAAGGACGA 61.330 63.158 0.00 0.00 45.65 4.20
5875 10504 2.675056 CGAGGACGAAGGACGACGT 61.675 63.158 0.00 0.00 45.77 4.34
5921 10550 3.311110 GGTGACTGTGAGCCGGGA 61.311 66.667 2.18 0.00 0.00 5.14
5939 10568 2.181021 GGTACGGGCTCACAGACG 59.819 66.667 0.00 0.00 0.00 4.18
5940 10569 2.181021 GTACGGGCTCACAGACGG 59.819 66.667 0.00 0.00 0.00 4.79
5941 10570 3.755628 TACGGGCTCACAGACGGC 61.756 66.667 0.00 0.00 0.00 5.68
5944 10573 4.459089 GGGCTCACAGACGGCCTC 62.459 72.222 0.00 0.00 44.70 4.70
5945 10574 4.459089 GGCTCACAGACGGCCTCC 62.459 72.222 0.00 0.00 42.31 4.30
5946 10575 3.386237 GCTCACAGACGGCCTCCT 61.386 66.667 0.00 0.00 0.00 3.69
5947 10576 2.948720 GCTCACAGACGGCCTCCTT 61.949 63.158 0.00 0.00 0.00 3.36
5948 10577 1.216710 CTCACAGACGGCCTCCTTC 59.783 63.158 0.00 0.00 0.00 3.46
5949 10578 2.232298 CTCACAGACGGCCTCCTTCC 62.232 65.000 0.00 0.00 0.00 3.46
5950 10579 3.003763 ACAGACGGCCTCCTTCCC 61.004 66.667 0.00 0.00 0.00 3.97
5951 10580 3.003173 CAGACGGCCTCCTTCCCA 61.003 66.667 0.00 0.00 0.00 4.37
5952 10581 2.041265 AGACGGCCTCCTTCCCAT 59.959 61.111 0.00 0.00 0.00 4.00
5953 10582 2.066999 AGACGGCCTCCTTCCCATC 61.067 63.158 0.00 0.00 0.00 3.51
5954 10583 2.041265 ACGGCCTCCTTCCCATCT 59.959 61.111 0.00 0.00 0.00 2.90
5955 10584 2.034048 GACGGCCTCCTTCCCATCTC 62.034 65.000 0.00 0.00 0.00 2.75
5956 10585 2.812619 CGGCCTCCTTCCCATCTCC 61.813 68.421 0.00 0.00 0.00 3.71
5957 10586 2.456443 GGCCTCCTTCCCATCTCCC 61.456 68.421 0.00 0.00 0.00 4.30
5958 10587 1.385206 GCCTCCTTCCCATCTCCCT 60.385 63.158 0.00 0.00 0.00 4.20
5959 10588 0.990818 GCCTCCTTCCCATCTCCCTT 60.991 60.000 0.00 0.00 0.00 3.95
5960 10589 1.135960 CCTCCTTCCCATCTCCCTTC 58.864 60.000 0.00 0.00 0.00 3.46
5961 10590 1.344906 CCTCCTTCCCATCTCCCTTCT 60.345 57.143 0.00 0.00 0.00 2.85
5962 10591 2.046292 CTCCTTCCCATCTCCCTTCTC 58.954 57.143 0.00 0.00 0.00 2.87
5963 10592 1.135960 CCTTCCCATCTCCCTTCTCC 58.864 60.000 0.00 0.00 0.00 3.71
5964 10593 1.626350 CCTTCCCATCTCCCTTCTCCA 60.626 57.143 0.00 0.00 0.00 3.86
5965 10594 1.488393 CTTCCCATCTCCCTTCTCCAC 59.512 57.143 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.052455 TGCTCATGTAATCAACACCGT 57.948 42.857 0.00 0.00 42.09 4.83
32 33 8.718158 AGGTTAGGTAGGTTACTATGTAATCC 57.282 38.462 0.00 0.00 0.00 3.01
61 62 6.115446 CAGAACCAATCATTGCTTAGGACTA 58.885 40.000 0.00 0.00 0.00 2.59
79 80 5.952526 TTTTTCCGATTTAGACCAGAACC 57.047 39.130 0.00 0.00 0.00 3.62
102 103 3.099905 TCTTCATCTCGTGTCCCTGATT 58.900 45.455 0.00 0.00 0.00 2.57
103 104 2.739943 TCTTCATCTCGTGTCCCTGAT 58.260 47.619 0.00 0.00 0.00 2.90
104 105 2.215942 TCTTCATCTCGTGTCCCTGA 57.784 50.000 0.00 0.00 0.00 3.86
105 106 2.493675 TCTTCTTCATCTCGTGTCCCTG 59.506 50.000 0.00 0.00 0.00 4.45
106 107 2.808919 TCTTCTTCATCTCGTGTCCCT 58.191 47.619 0.00 0.00 0.00 4.20
109 110 4.377839 TCCATCTTCTTCATCTCGTGTC 57.622 45.455 0.00 0.00 0.00 3.67
110 111 6.266330 TCATATCCATCTTCTTCATCTCGTGT 59.734 38.462 0.00 0.00 0.00 4.49
111 112 6.585702 GTCATATCCATCTTCTTCATCTCGTG 59.414 42.308 0.00 0.00 0.00 4.35
112 113 6.266330 TGTCATATCCATCTTCTTCATCTCGT 59.734 38.462 0.00 0.00 0.00 4.18
113 114 6.685657 TGTCATATCCATCTTCTTCATCTCG 58.314 40.000 0.00 0.00 0.00 4.04
114 115 7.064847 GCATGTCATATCCATCTTCTTCATCTC 59.935 40.741 0.00 0.00 0.00 2.75
129 130 1.066143 CCCTACCCCGCATGTCATATC 60.066 57.143 0.00 0.00 0.00 1.63
159 160 6.044054 ACCCTGGACCTATTTAATAAGCTACC 59.956 42.308 0.00 0.00 0.00 3.18
170 173 5.043762 TCAATCCTAACCCTGGACCTATTT 58.956 41.667 0.00 0.00 36.30 1.40
173 176 3.788116 TCAATCCTAACCCTGGACCTA 57.212 47.619 0.00 0.00 36.30 3.08
177 180 2.205342 CCCTTCAATCCTAACCCTGGA 58.795 52.381 0.00 0.00 38.06 3.86
178 181 1.215423 CCCCTTCAATCCTAACCCTGG 59.785 57.143 0.00 0.00 0.00 4.45
185 188 1.056660 GCCGATCCCCTTCAATCCTA 58.943 55.000 0.00 0.00 0.00 2.94
194 197 2.683465 ATGTGCTTGCCGATCCCCT 61.683 57.895 0.00 0.00 0.00 4.79
195 198 2.124151 ATGTGCTTGCCGATCCCC 60.124 61.111 0.00 0.00 0.00 4.81
240 244 1.916181 AGGTCCATCGGAATCAAACCT 59.084 47.619 0.00 0.00 31.38 3.50
259 263 8.669243 TGCCAAAACAAACCTTAAATTTGTAAG 58.331 29.630 14.65 0.00 46.88 2.34
260 264 8.451748 GTGCCAAAACAAACCTTAAATTTGTAA 58.548 29.630 14.65 0.00 46.88 2.41
264 268 7.637631 ATGTGCCAAAACAAACCTTAAATTT 57.362 28.000 0.00 0.00 32.81 1.82
267 271 6.623767 GCAAATGTGCCAAAACAAACCTTAAA 60.624 34.615 0.00 0.00 45.68 1.52
270 274 3.128415 GCAAATGTGCCAAAACAAACCTT 59.872 39.130 0.00 0.00 45.68 3.50
272 276 3.063670 GCAAATGTGCCAAAACAAACC 57.936 42.857 0.00 0.00 45.68 3.27
302 365 2.267351 TGTCGTCGGTTCGGCCTTA 61.267 57.895 0.00 0.00 34.35 2.69
304 367 4.353437 GTGTCGTCGGTTCGGCCT 62.353 66.667 0.00 0.00 34.35 5.19
311 374 2.114331 CTCGTCACAGTGTCGTCGGT 62.114 60.000 17.87 0.00 31.27 4.69
316 379 1.442857 GCCTCTCGTCACAGTGTCG 60.443 63.158 13.29 13.29 0.00 4.35
318 381 0.249489 GTTGCCTCTCGTCACAGTGT 60.249 55.000 0.00 0.00 0.00 3.55
320 383 0.464036 TTGTTGCCTCTCGTCACAGT 59.536 50.000 0.00 0.00 0.00 3.55
322 385 0.249868 CCTTGTTGCCTCTCGTCACA 60.250 55.000 0.00 0.00 0.00 3.58
324 387 1.301716 GCCTTGTTGCCTCTCGTCA 60.302 57.895 0.00 0.00 0.00 4.35
327 390 2.357517 ACGCCTTGTTGCCTCTCG 60.358 61.111 0.00 0.00 0.00 4.04
330 393 2.594592 ACCACGCCTTGTTGCCTC 60.595 61.111 0.00 0.00 0.00 4.70
331 394 2.906897 CACCACGCCTTGTTGCCT 60.907 61.111 0.00 0.00 0.00 4.75
332 395 3.194272 GACACCACGCCTTGTTGCC 62.194 63.158 0.00 0.00 0.00 4.52
358 421 4.316823 TCACTCCCAGCCCGTCCT 62.317 66.667 0.00 0.00 0.00 3.85
361 424 4.640690 AGGTCACTCCCAGCCCGT 62.641 66.667 0.00 0.00 36.75 5.28
362 425 4.087892 CAGGTCACTCCCAGCCCG 62.088 72.222 0.00 0.00 36.75 6.13
364 427 1.977293 GATCCAGGTCACTCCCAGCC 61.977 65.000 0.00 0.00 36.75 4.85
368 431 2.435693 CCGGATCCAGGTCACTCCC 61.436 68.421 13.41 0.00 36.75 4.30
370 433 2.435693 CCCCGGATCCAGGTCACTC 61.436 68.421 13.22 0.00 0.00 3.51
373 436 1.689233 CTTCCCCGGATCCAGGTCA 60.689 63.158 13.22 0.00 0.00 4.02
376 439 2.797278 CGTCTTCCCCGGATCCAGG 61.797 68.421 13.41 10.21 0.00 4.45
385 448 3.110178 CGTCGTTGCGTCTTCCCC 61.110 66.667 0.00 0.00 0.00 4.81
394 457 2.723271 TGTCGTCGTCGTCGTTGC 60.723 61.111 11.41 4.80 38.33 4.17
397 460 4.360027 CGGTGTCGTCGTCGTCGT 62.360 66.667 11.41 0.00 38.33 4.34
400 463 3.720193 CCTCGGTGTCGTCGTCGT 61.720 66.667 1.33 0.00 38.33 4.34
404 467 3.812019 CCTCCCTCGGTGTCGTCG 61.812 72.222 0.00 0.00 37.69 5.12
405 468 3.450115 CCCTCCCTCGGTGTCGTC 61.450 72.222 0.00 0.00 37.69 4.20
407 470 4.753662 TCCCCTCCCTCGGTGTCG 62.754 72.222 0.00 0.00 37.82 4.35
414 477 0.761323 GTCTTAGCCTCCCCTCCCTC 60.761 65.000 0.00 0.00 0.00 4.30
415 478 1.232461 AGTCTTAGCCTCCCCTCCCT 61.232 60.000 0.00 0.00 0.00 4.20
416 479 0.326713 AAGTCTTAGCCTCCCCTCCC 60.327 60.000 0.00 0.00 0.00 4.30
426 489 3.132467 ACCCCGAACTATCAAGTCTTAGC 59.868 47.826 0.00 0.00 33.75 3.09
437 500 1.764854 ATCCCGCACCCCGAACTAT 60.765 57.895 0.00 0.00 40.02 2.12
438 501 2.364579 ATCCCGCACCCCGAACTA 60.365 61.111 0.00 0.00 40.02 2.24
439 502 4.096003 CATCCCGCACCCCGAACT 62.096 66.667 0.00 0.00 40.02 3.01
454 518 1.152652 TTTGGCACCGACAACCCAT 60.153 52.632 0.00 0.00 26.20 4.00
459 523 1.407258 CCTTTTCTTTGGCACCGACAA 59.593 47.619 0.00 0.00 0.00 3.18
469 533 5.124457 ACCATCATCGTCATCCTTTTCTTTG 59.876 40.000 0.00 0.00 0.00 2.77
470 534 5.124457 CACCATCATCGTCATCCTTTTCTTT 59.876 40.000 0.00 0.00 0.00 2.52
471 535 4.637534 CACCATCATCGTCATCCTTTTCTT 59.362 41.667 0.00 0.00 0.00 2.52
484 548 1.451927 CCCACCACCACCATCATCG 60.452 63.158 0.00 0.00 0.00 3.84
486 550 0.549902 TCTCCCACCACCACCATCAT 60.550 55.000 0.00 0.00 0.00 2.45
487 551 0.770166 TTCTCCCACCACCACCATCA 60.770 55.000 0.00 0.00 0.00 3.07
490 554 1.715019 CCTTTCTCCCACCACCACCA 61.715 60.000 0.00 0.00 0.00 4.17
499 563 1.307866 CTAGGCCCCCTTTCTCCCA 60.308 63.158 0.00 0.00 34.61 4.37
503 567 0.421904 TTCCTCTAGGCCCCCTTTCT 59.578 55.000 0.00 0.00 34.61 2.52
505 569 1.299939 CTTTCCTCTAGGCCCCCTTT 58.700 55.000 0.00 0.00 34.61 3.11
525 589 2.537401 GTCATGTTGCTACTACCCGAC 58.463 52.381 0.00 0.00 0.00 4.79
573 644 2.475466 AATCCAATGCTGCCGCTCG 61.475 57.895 0.70 0.00 36.97 5.03
575 646 1.378911 TCAATCCAATGCTGCCGCT 60.379 52.632 0.70 0.00 36.97 5.52
577 648 0.099968 CACTCAATCCAATGCTGCCG 59.900 55.000 0.00 0.00 0.00 5.69
578 649 0.458669 CCACTCAATCCAATGCTGCC 59.541 55.000 0.00 0.00 0.00 4.85
579 650 0.458669 CCCACTCAATCCAATGCTGC 59.541 55.000 0.00 0.00 0.00 5.25
587 675 2.619074 CCTTCTTCCACCCACTCAATCC 60.619 54.545 0.00 0.00 0.00 3.01
593 681 0.178873 TAGCCCTTCTTCCACCCACT 60.179 55.000 0.00 0.00 0.00 4.00
594 682 0.253327 CTAGCCCTTCTTCCACCCAC 59.747 60.000 0.00 0.00 0.00 4.61
605 693 0.031616 CTCTCCCTCCACTAGCCCTT 60.032 60.000 0.00 0.00 0.00 3.95
607 695 1.458588 CCTCTCCCTCCACTAGCCC 60.459 68.421 0.00 0.00 0.00 5.19
608 696 0.325765 AACCTCTCCCTCCACTAGCC 60.326 60.000 0.00 0.00 0.00 3.93
609 697 2.033372 GTAACCTCTCCCTCCACTAGC 58.967 57.143 0.00 0.00 0.00 3.42
610 698 3.383698 TGTAACCTCTCCCTCCACTAG 57.616 52.381 0.00 0.00 0.00 2.57
611 699 3.271225 TCATGTAACCTCTCCCTCCACTA 59.729 47.826 0.00 0.00 0.00 2.74
612 700 2.044492 TCATGTAACCTCTCCCTCCACT 59.956 50.000 0.00 0.00 0.00 4.00
614 702 2.044492 ACTCATGTAACCTCTCCCTCCA 59.956 50.000 0.00 0.00 0.00 3.86
618 706 2.100989 ACGACTCATGTAACCTCTCCC 58.899 52.381 0.00 0.00 0.00 4.30
620 708 4.436242 TCAACGACTCATGTAACCTCTC 57.564 45.455 0.00 0.00 0.00 3.20
622 710 6.481954 AAATTCAACGACTCATGTAACCTC 57.518 37.500 0.00 0.00 0.00 3.85
623 711 7.972832 TTAAATTCAACGACTCATGTAACCT 57.027 32.000 0.00 0.00 0.00 3.50
624 712 9.274065 GATTTAAATTCAACGACTCATGTAACC 57.726 33.333 1.43 0.00 0.00 2.85
626 714 8.927721 TCGATTTAAATTCAACGACTCATGTAA 58.072 29.630 1.43 0.00 0.00 2.41
627 715 8.468720 TCGATTTAAATTCAACGACTCATGTA 57.531 30.769 1.43 0.00 0.00 2.29
628 716 7.359262 TCGATTTAAATTCAACGACTCATGT 57.641 32.000 1.43 0.00 0.00 3.21
629 717 7.046251 CGTTCGATTTAAATTCAACGACTCATG 60.046 37.037 26.19 10.28 36.57 3.07
630 718 6.953743 CGTTCGATTTAAATTCAACGACTCAT 59.046 34.615 26.19 0.00 36.57 2.90
631 719 6.293618 CGTTCGATTTAAATTCAACGACTCA 58.706 36.000 26.19 7.41 36.57 3.41
632 720 5.726679 CCGTTCGATTTAAATTCAACGACTC 59.273 40.000 29.15 16.70 36.57 3.36
633 721 5.614760 CCGTTCGATTTAAATTCAACGACT 58.385 37.500 29.15 0.73 36.57 4.18
634 722 4.259046 GCCGTTCGATTTAAATTCAACGAC 59.741 41.667 29.15 21.45 36.57 4.34
635 723 4.152759 AGCCGTTCGATTTAAATTCAACGA 59.847 37.500 29.15 19.61 36.57 3.85
636 724 4.399978 AGCCGTTCGATTTAAATTCAACG 58.600 39.130 24.73 24.73 35.35 4.10
637 725 7.784790 TTTAGCCGTTCGATTTAAATTCAAC 57.215 32.000 1.43 7.47 0.00 3.18
638 726 8.798748 TTTTTAGCCGTTCGATTTAAATTCAA 57.201 26.923 1.43 0.00 0.00 2.69
692 780 5.861787 GCACAATTAACGCCTATCACTTTTT 59.138 36.000 0.00 0.00 0.00 1.94
693 781 5.399013 GCACAATTAACGCCTATCACTTTT 58.601 37.500 0.00 0.00 0.00 2.27
694 782 4.436852 CGCACAATTAACGCCTATCACTTT 60.437 41.667 0.00 0.00 0.00 2.66
695 783 3.063452 CGCACAATTAACGCCTATCACTT 59.937 43.478 0.00 0.00 0.00 3.16
696 784 2.607635 CGCACAATTAACGCCTATCACT 59.392 45.455 0.00 0.00 0.00 3.41
697 785 2.350498 ACGCACAATTAACGCCTATCAC 59.650 45.455 0.00 0.00 0.00 3.06
698 786 2.623535 ACGCACAATTAACGCCTATCA 58.376 42.857 0.00 0.00 0.00 2.15
699 787 3.668596 AACGCACAATTAACGCCTATC 57.331 42.857 0.00 0.00 0.00 2.08
700 788 4.162812 CAAAACGCACAATTAACGCCTAT 58.837 39.130 0.00 0.00 0.00 2.57
701 789 3.556513 CAAAACGCACAATTAACGCCTA 58.443 40.909 0.00 0.00 0.00 3.93
702 790 2.389998 CAAAACGCACAATTAACGCCT 58.610 42.857 0.00 0.00 0.00 5.52
703 791 1.136748 GCAAAACGCACAATTAACGCC 60.137 47.619 0.00 0.00 41.79 5.68
704 792 1.136748 GGCAAAACGCACAATTAACGC 60.137 47.619 0.00 0.00 45.17 4.84
705 793 2.097637 GTGGCAAAACGCACAATTAACG 60.098 45.455 0.00 0.00 45.17 3.18
706 794 2.219903 GGTGGCAAAACGCACAATTAAC 59.780 45.455 0.00 0.00 45.17 2.01
707 795 2.474816 GGTGGCAAAACGCACAATTAA 58.525 42.857 0.00 0.00 45.17 1.40
708 796 1.600663 CGGTGGCAAAACGCACAATTA 60.601 47.619 0.00 0.00 45.17 1.40
709 797 0.873743 CGGTGGCAAAACGCACAATT 60.874 50.000 0.00 0.00 45.17 2.32
710 798 1.299773 CGGTGGCAAAACGCACAAT 60.300 52.632 0.00 0.00 45.17 2.71
711 799 2.103143 CGGTGGCAAAACGCACAA 59.897 55.556 0.00 0.00 45.17 3.33
716 804 2.354539 CAAGGCGGTGGCAAAACG 60.355 61.111 0.00 0.00 42.47 3.60
717 805 2.661537 GCAAGGCGGTGGCAAAAC 60.662 61.111 0.00 0.00 42.47 2.43
728 816 1.234615 TGGTCAGTAAAGCGCAAGGC 61.235 55.000 11.47 0.00 44.05 4.35
729 817 1.234821 TTGGTCAGTAAAGCGCAAGG 58.765 50.000 11.47 0.00 38.28 3.61
730 818 2.921126 CTTTGGTCAGTAAAGCGCAAG 58.079 47.619 11.47 0.00 43.44 4.01
736 824 2.855180 CATGCGCTTTGGTCAGTAAAG 58.145 47.619 9.73 0.00 38.00 1.85
737 825 1.068610 GCATGCGCTTTGGTCAGTAAA 60.069 47.619 9.73 0.00 34.30 2.01
738 826 0.521291 GCATGCGCTTTGGTCAGTAA 59.479 50.000 9.73 0.00 34.30 2.24
739 827 2.170738 GCATGCGCTTTGGTCAGTA 58.829 52.632 9.73 0.00 34.30 2.74
740 828 2.956987 GCATGCGCTTTGGTCAGT 59.043 55.556 9.73 0.00 34.30 3.41
753 841 2.313234 GCATAACTGCGCATAAGCATG 58.687 47.619 12.24 11.51 46.97 4.06
754 842 2.693797 GCATAACTGCGCATAAGCAT 57.306 45.000 12.24 0.00 46.97 3.79
763 851 4.550744 CGCATTAATATGTGCATAACTGCG 59.449 41.667 17.52 17.52 40.55 5.18
764 852 5.451908 ACGCATTAATATGTGCATAACTGC 58.548 37.500 0.00 0.00 44.35 4.40
767 855 9.194716 CGTATTACGCATTAATATGTGCATAAC 57.805 33.333 2.88 0.00 44.35 1.89
768 856 8.927721 ACGTATTACGCATTAATATGTGCATAA 58.072 29.630 15.81 4.59 45.41 1.90
769 857 8.468720 ACGTATTACGCATTAATATGTGCATA 57.531 30.769 15.81 0.00 45.41 3.14
770 858 7.359262 ACGTATTACGCATTAATATGTGCAT 57.641 32.000 15.81 0.00 45.41 3.96
771 859 6.772770 ACGTATTACGCATTAATATGTGCA 57.227 33.333 15.81 0.00 45.41 4.57
772 860 8.406716 CAAAACGTATTACGCATTAATATGTGC 58.593 33.333 15.81 0.00 46.00 4.57
773 861 8.406716 GCAAAACGTATTACGCATTAATATGTG 58.593 33.333 15.81 6.99 46.00 3.21
784 872 3.828677 GCGTTGGCAAAACGTATTACGC 61.829 50.000 20.60 11.90 44.69 4.42
785 873 1.899971 GCGTTGGCAAAACGTATTACG 59.100 47.619 20.60 14.41 44.69 3.18
786 874 2.095617 AGGCGTTGGCAAAACGTATTAC 60.096 45.455 20.60 7.53 44.69 1.89
787 875 2.152830 AGGCGTTGGCAAAACGTATTA 58.847 42.857 20.60 0.00 44.69 0.98
788 876 0.955905 AGGCGTTGGCAAAACGTATT 59.044 45.000 20.60 7.93 44.69 1.89
789 877 1.735571 CTAGGCGTTGGCAAAACGTAT 59.264 47.619 20.60 13.75 44.69 3.06
790 878 1.149987 CTAGGCGTTGGCAAAACGTA 58.850 50.000 20.60 7.95 44.69 3.57
791 879 0.533308 TCTAGGCGTTGGCAAAACGT 60.533 50.000 20.60 7.26 44.69 3.99
792 880 0.165944 CTCTAGGCGTTGGCAAAACG 59.834 55.000 16.88 16.88 45.56 3.60
793 881 0.109735 GCTCTAGGCGTTGGCAAAAC 60.110 55.000 0.00 0.00 42.47 2.43
794 882 1.241315 GGCTCTAGGCGTTGGCAAAA 61.241 55.000 0.00 0.00 42.47 2.44
795 883 1.674322 GGCTCTAGGCGTTGGCAAA 60.674 57.895 0.00 0.00 42.47 3.68
796 884 1.261938 TAGGCTCTAGGCGTTGGCAA 61.262 55.000 0.00 0.00 46.23 4.52
797 885 1.261938 TTAGGCTCTAGGCGTTGGCA 61.262 55.000 0.00 0.00 46.23 4.92
798 886 0.530870 CTTAGGCTCTAGGCGTTGGC 60.531 60.000 0.00 0.00 46.23 4.52
799 887 0.530870 GCTTAGGCTCTAGGCGTTGG 60.531 60.000 0.00 0.89 46.23 3.77
800 888 0.872021 CGCTTAGGCTCTAGGCGTTG 60.872 60.000 21.94 0.09 46.23 4.10
801 889 1.437986 CGCTTAGGCTCTAGGCGTT 59.562 57.895 21.94 0.00 46.23 4.84
802 890 3.121019 CGCTTAGGCTCTAGGCGT 58.879 61.111 21.94 0.00 46.23 5.68
804 892 2.355244 CGCGCTTAGGCTCTAGGC 60.355 66.667 5.56 6.34 41.43 3.93
805 893 2.355244 GCGCGCTTAGGCTCTAGG 60.355 66.667 26.67 0.00 36.09 3.02
806 894 2.727647 CGCGCGCTTAGGCTCTAG 60.728 66.667 30.48 5.07 36.09 2.43
807 895 4.925576 GCGCGCGCTTAGGCTCTA 62.926 66.667 44.38 0.00 38.26 2.43
821 909 0.796927 AAAAAGACGAGCCTAAGCGC 59.203 50.000 0.00 0.00 46.67 5.92
852 940 8.500773 CCGACTATAGTTAAGTTGCTTGAAAAA 58.499 33.333 6.88 0.00 0.00 1.94
853 941 7.360607 GCCGACTATAGTTAAGTTGCTTGAAAA 60.361 37.037 6.88 0.00 0.00 2.29
854 942 6.091713 GCCGACTATAGTTAAGTTGCTTGAAA 59.908 38.462 6.88 0.00 0.00 2.69
855 943 5.579511 GCCGACTATAGTTAAGTTGCTTGAA 59.420 40.000 6.88 0.00 0.00 2.69
856 944 5.107133 GCCGACTATAGTTAAGTTGCTTGA 58.893 41.667 6.88 0.00 0.00 3.02
897 985 1.142060 TGTGAGTTTGGTTCACCGGAT 59.858 47.619 9.46 0.00 43.32 4.18
951 1076 3.320879 CTGGCTGCCGTGACAGGAT 62.321 63.158 14.98 0.00 38.16 3.24
954 1079 2.740055 GACTGGCTGCCGTGACAG 60.740 66.667 18.25 10.58 40.80 3.51
968 1093 2.101582 GTGGTCACTTCACTGACTGACT 59.898 50.000 12.72 0.00 40.50 3.41
970 1095 2.101415 CTGTGGTCACTTCACTGACTGA 59.899 50.000 2.66 0.00 40.50 3.41
984 1120 0.593128 GCATTGTGTGGTCTGTGGTC 59.407 55.000 0.00 0.00 0.00 4.02
1278 1415 2.612095 AAACGTGGAGGCACCCGAAA 62.612 55.000 15.95 0.00 38.00 3.46
1314 1451 3.604494 ATTGTGCTCGACGACGCGA 62.604 57.895 15.93 12.44 39.58 5.87
1357 1494 1.066587 CAACCAAGCGCCGGAAAAA 59.933 52.632 19.66 0.00 0.00 1.94
1358 1495 1.668101 AACAACCAAGCGCCGGAAAA 61.668 50.000 19.66 0.00 0.00 2.29
1369 1506 5.588648 CACTTCAGTTAGAGGAAACAACCAA 59.411 40.000 0.00 0.00 0.00 3.67
1386 1523 2.905075 TCACAACCTCACACACTTCAG 58.095 47.619 0.00 0.00 0.00 3.02
1419 1556 1.962807 CTCCACACCCAAGAATGCAAA 59.037 47.619 0.00 0.00 0.00 3.68
1589 1729 1.066152 CGATGAGGATTCTGCAGTCGA 59.934 52.381 14.67 1.43 0.00 4.20
1652 1802 1.064240 AGCATTCACATCTCATGGCCA 60.064 47.619 8.56 8.56 33.60 5.36
1769 1920 1.764571 GCCTACCCACACTGACCACA 61.765 60.000 0.00 0.00 0.00 4.17
1860 2011 5.721960 ACCTATTGTATCACTGAGGACAAGT 59.278 40.000 12.48 5.43 35.41 3.16
1945 2104 1.076485 ATCCATGTCCTTGCCCAGC 60.076 57.895 0.00 0.00 0.00 4.85
1981 2140 1.207329 GTCTGGGCGTAGGAAACAGAT 59.793 52.381 0.00 0.00 39.97 2.90
2360 2524 1.106285 GCATCCCAACCAGCCTAAAG 58.894 55.000 0.00 0.00 0.00 1.85
2495 2659 2.485479 GCATATATATCAGGGGGTGCCG 60.485 54.545 0.00 0.00 0.00 5.69
2617 4221 5.500234 ACTCAAATTAGCTAGACATTGCCA 58.500 37.500 0.00 0.00 0.00 4.92
2723 4328 2.048603 GCAGTGCCACCCCAATCTC 61.049 63.158 2.85 0.00 0.00 2.75
2869 4489 9.830186 AACCAGATCTGTAACCTCACTATATAT 57.170 33.333 21.11 0.00 0.00 0.86
2870 4490 9.078990 CAACCAGATCTGTAACCTCACTATATA 57.921 37.037 21.11 0.00 0.00 0.86
2871 4491 7.015682 CCAACCAGATCTGTAACCTCACTATAT 59.984 40.741 21.11 0.00 0.00 0.86
2872 4492 6.323996 CCAACCAGATCTGTAACCTCACTATA 59.676 42.308 21.11 0.00 0.00 1.31
2873 4493 5.129485 CCAACCAGATCTGTAACCTCACTAT 59.871 44.000 21.11 0.00 0.00 2.12
2874 4494 4.466370 CCAACCAGATCTGTAACCTCACTA 59.534 45.833 21.11 0.00 0.00 2.74
2875 4495 3.261897 CCAACCAGATCTGTAACCTCACT 59.738 47.826 21.11 0.00 0.00 3.41
2876 4496 3.260884 TCCAACCAGATCTGTAACCTCAC 59.739 47.826 21.11 0.00 0.00 3.51
2919 4539 6.248433 TGAAGCATTTAGAAATTCCACTCCT 58.752 36.000 0.00 0.00 0.00 3.69
3102 4749 2.991866 GTGGTCTAAGTGCTACCGAAAC 59.008 50.000 0.00 0.00 35.98 2.78
3181 4828 1.681264 ACAGCCAAGCAGGTTAACAAC 59.319 47.619 8.10 0.00 40.61 3.32
3208 4856 9.899226 CTGAACTTAGGATTTGTCCTTAAAAAG 57.101 33.333 1.81 3.20 41.12 2.27
3251 4899 5.047306 CCCTGGATCGATAATGCTACACTTA 60.047 44.000 0.00 0.00 0.00 2.24
3252 4900 4.262635 CCCTGGATCGATAATGCTACACTT 60.263 45.833 0.00 0.00 0.00 3.16
3316 4969 7.472761 TGGCTAACCCTCTCCATTTTGGAAA 62.473 44.000 0.00 0.00 40.08 3.13
3436 5092 2.270352 TGGGAGTGCTTACAGTTTGG 57.730 50.000 0.00 0.00 0.00 3.28
3455 5139 9.898152 TTTTTCTGATGGAACTTTTGGTATTTT 57.102 25.926 0.00 0.00 33.13 1.82
3472 5156 7.502060 TGTCTAGGGAGAATCTTTTTCTGAT 57.498 36.000 0.00 0.00 31.96 2.90
3507 5191 6.204688 TGCTCCACATTAGTAACTCAAAACTG 59.795 38.462 0.00 0.00 0.00 3.16
3552 5236 9.082313 GTTCCATATGAAGTTGGGATCAATTAT 57.918 33.333 3.65 0.00 35.10 1.28
3802 5488 7.329588 TCATCATAGAGTTTCTGTTACGCTA 57.670 36.000 0.00 0.00 33.47 4.26
3803 5489 6.208988 TCATCATAGAGTTTCTGTTACGCT 57.791 37.500 0.00 0.00 0.00 5.07
3804 5490 7.470289 AATCATCATAGAGTTTCTGTTACGC 57.530 36.000 0.00 0.00 0.00 4.42
3992 5679 4.750598 GGAGACGACTTATATTTCCCTTGC 59.249 45.833 0.00 0.00 0.00 4.01
4026 5713 4.526650 TGATGCTTACTCATCCCGCTAATA 59.473 41.667 1.84 0.00 41.54 0.98
4322 6011 8.535335 ACTAGCAGAACAGATAAAGAATCAAGA 58.465 33.333 0.00 0.00 37.03 3.02
4337 6026 6.705302 AGATGAATCTTGAACTAGCAGAACA 58.295 36.000 0.00 0.00 31.97 3.18
4386 6075 4.080695 AGAGAGCAAAATCTATGAGCACCA 60.081 41.667 0.00 0.00 0.00 4.17
4442 6137 9.638176 AAGGCTATTCATAAAAGAAGACATGAT 57.362 29.630 0.00 0.00 0.00 2.45
4482 6182 3.019564 AGTGCAAACAAGTGAGCTTCTT 58.980 40.909 0.00 0.00 31.49 2.52
4483 6183 2.648059 AGTGCAAACAAGTGAGCTTCT 58.352 42.857 0.00 0.00 31.49 2.85
4492 6192 1.067635 GTGGCCCATAGTGCAAACAAG 60.068 52.381 0.00 0.00 0.00 3.16
4638 9091 6.764560 ACCAAATTATCAATACGGAGGTGTAC 59.235 38.462 0.00 0.00 0.00 2.90
4803 9256 2.554893 GACCGTAAGCCAACAATCCAAA 59.445 45.455 0.00 0.00 0.00 3.28
4868 9321 4.455533 TCGACAAGGAGACCATCAAATTTG 59.544 41.667 12.15 12.15 0.00 2.32
4881 9334 1.817099 GCCAGCCATCGACAAGGAG 60.817 63.158 4.68 0.00 0.00 3.69
5111 9565 3.355378 TCCGCTTCATTTGATGGACATT 58.645 40.909 0.00 0.00 0.00 2.71
5140 9597 0.321653 AATCACTTGGACGAGCCCAC 60.322 55.000 0.00 0.00 35.62 4.61
5144 9601 3.062639 CACATACAATCACTTGGACGAGC 59.937 47.826 0.00 0.00 36.64 5.03
5165 9622 3.560105 TGTGACCATTGGATTGTCAACA 58.440 40.909 10.37 1.77 40.41 3.33
5173 9631 2.795329 GTCCAGTTGTGACCATTGGAT 58.205 47.619 10.37 0.00 37.18 3.41
5448 10042 2.684655 CCCAACCATGCCCCAAGG 60.685 66.667 0.00 0.00 0.00 3.61
5567 10172 1.007038 CGTCGTCCGTTCTTCCCAA 60.007 57.895 0.00 0.00 0.00 4.12
5568 10173 2.646719 CGTCGTCCGTTCTTCCCA 59.353 61.111 0.00 0.00 0.00 4.37
5656 10282 0.321671 CAAGCTCCGGTTCTCCTTCA 59.678 55.000 0.00 0.00 0.00 3.02
5660 10286 1.446272 CGACAAGCTCCGGTTCTCC 60.446 63.158 0.00 0.00 0.00 3.71
5661 10287 0.038526 TTCGACAAGCTCCGGTTCTC 60.039 55.000 0.00 0.00 0.00 2.87
5662 10288 0.038159 CTTCGACAAGCTCCGGTTCT 60.038 55.000 0.00 0.00 0.00 3.01
5664 10290 0.608640 ATCTTCGACAAGCTCCGGTT 59.391 50.000 0.00 0.00 0.00 4.44
5665 10291 0.108615 CATCTTCGACAAGCTCCGGT 60.109 55.000 0.00 0.00 0.00 5.28
5666 10292 0.173481 TCATCTTCGACAAGCTCCGG 59.827 55.000 0.00 0.00 0.00 5.14
5667 10293 1.923204 CTTCATCTTCGACAAGCTCCG 59.077 52.381 0.00 0.00 0.00 4.63
5668 10294 2.093973 TCCTTCATCTTCGACAAGCTCC 60.094 50.000 0.00 0.00 0.00 4.70
5669 10295 3.119316 TCTCCTTCATCTTCGACAAGCTC 60.119 47.826 0.00 0.00 0.00 4.09
5670 10296 2.828520 TCTCCTTCATCTTCGACAAGCT 59.171 45.455 0.00 0.00 0.00 3.74
5671 10297 3.238108 TCTCCTTCATCTTCGACAAGC 57.762 47.619 0.00 0.00 0.00 4.01
5672 10298 3.929610 GGTTCTCCTTCATCTTCGACAAG 59.070 47.826 0.00 0.00 0.00 3.16
5673 10299 3.614150 CGGTTCTCCTTCATCTTCGACAA 60.614 47.826 0.00 0.00 0.00 3.18
5674 10300 2.094700 CGGTTCTCCTTCATCTTCGACA 60.095 50.000 0.00 0.00 0.00 4.35
5675 10301 2.531206 CGGTTCTCCTTCATCTTCGAC 58.469 52.381 0.00 0.00 0.00 4.20
5676 10302 1.476891 CCGGTTCTCCTTCATCTTCGA 59.523 52.381 0.00 0.00 0.00 3.71
5677 10303 1.476891 TCCGGTTCTCCTTCATCTTCG 59.523 52.381 0.00 0.00 0.00 3.79
5678 10304 2.740256 GCTCCGGTTCTCCTTCATCTTC 60.740 54.545 0.00 0.00 0.00 2.87
5679 10305 1.208293 GCTCCGGTTCTCCTTCATCTT 59.792 52.381 0.00 0.00 0.00 2.40
5680 10306 0.827368 GCTCCGGTTCTCCTTCATCT 59.173 55.000 0.00 0.00 0.00 2.90
5681 10307 0.827368 AGCTCCGGTTCTCCTTCATC 59.173 55.000 0.00 0.00 0.00 2.92
5682 10308 1.065854 CAAGCTCCGGTTCTCCTTCAT 60.066 52.381 0.00 0.00 0.00 2.57
5683 10309 0.321671 CAAGCTCCGGTTCTCCTTCA 59.678 55.000 0.00 0.00 0.00 3.02
5684 10310 0.321996 ACAAGCTCCGGTTCTCCTTC 59.678 55.000 0.00 0.00 0.00 3.46
5685 10311 0.321996 GACAAGCTCCGGTTCTCCTT 59.678 55.000 0.00 0.00 0.00 3.36
5686 10312 1.878656 CGACAAGCTCCGGTTCTCCT 61.879 60.000 0.00 0.00 0.00 3.69
5687 10313 1.446272 CGACAAGCTCCGGTTCTCC 60.446 63.158 0.00 0.00 0.00 3.71
5715 10341 1.115930 AGTTCTCTGCCTCCGTGTGT 61.116 55.000 0.00 0.00 0.00 3.72
5717 10343 0.827925 TCAGTTCTCTGCCTCCGTGT 60.828 55.000 0.00 0.00 41.10 4.49
5727 10353 3.694072 CCGTCATCTTCTCTCAGTTCTCT 59.306 47.826 0.00 0.00 0.00 3.10
5728 10354 3.442273 ACCGTCATCTTCTCTCAGTTCTC 59.558 47.826 0.00 0.00 0.00 2.87
5729 10355 3.192422 CACCGTCATCTTCTCTCAGTTCT 59.808 47.826 0.00 0.00 0.00 3.01
5730 10356 3.191581 TCACCGTCATCTTCTCTCAGTTC 59.808 47.826 0.00 0.00 0.00 3.01
5731 10357 3.157881 TCACCGTCATCTTCTCTCAGTT 58.842 45.455 0.00 0.00 0.00 3.16
5732 10358 2.752354 CTCACCGTCATCTTCTCTCAGT 59.248 50.000 0.00 0.00 0.00 3.41
5733 10359 2.098934 CCTCACCGTCATCTTCTCTCAG 59.901 54.545 0.00 0.00 0.00 3.35
5734 10360 2.095461 CCTCACCGTCATCTTCTCTCA 58.905 52.381 0.00 0.00 0.00 3.27
5735 10361 2.098443 GTCCTCACCGTCATCTTCTCTC 59.902 54.545 0.00 0.00 0.00 3.20
5736 10362 2.096248 GTCCTCACCGTCATCTTCTCT 58.904 52.381 0.00 0.00 0.00 3.10
5750 10376 0.524816 GCGCTTAATCGTCGTCCTCA 60.525 55.000 0.00 0.00 0.00 3.86
5755 10381 3.252484 GGCGCGCTTAATCGTCGT 61.252 61.111 32.29 0.00 33.80 4.34
5898 10527 4.363990 CTCACAGTCACCGCGGCT 62.364 66.667 28.58 12.20 0.00 5.52
5903 10532 4.742201 CCCGGCTCACAGTCACCG 62.742 72.222 0.00 0.00 45.21 4.94
5904 10533 3.302347 CTCCCGGCTCACAGTCACC 62.302 68.421 0.00 0.00 0.00 4.02
5905 10534 2.262915 CTCCCGGCTCACAGTCAC 59.737 66.667 0.00 0.00 0.00 3.67
5906 10535 2.435120 TACCTCCCGGCTCACAGTCA 62.435 60.000 0.00 0.00 0.00 3.41
5907 10536 1.681327 TACCTCCCGGCTCACAGTC 60.681 63.158 0.00 0.00 0.00 3.51
5908 10537 1.982938 GTACCTCCCGGCTCACAGT 60.983 63.158 0.00 0.00 0.00 3.55
5921 10550 2.341101 CGTCTGTGAGCCCGTACCT 61.341 63.158 0.00 0.00 0.00 3.08
5930 10559 1.216710 GAAGGAGGCCGTCTGTGAG 59.783 63.158 0.00 0.00 0.00 3.51
5939 10568 2.456443 GGGAGATGGGAAGGAGGCC 61.456 68.421 0.00 0.00 0.00 5.19
5940 10569 0.990818 AAGGGAGATGGGAAGGAGGC 60.991 60.000 0.00 0.00 0.00 4.70
5941 10570 1.135960 GAAGGGAGATGGGAAGGAGG 58.864 60.000 0.00 0.00 0.00 4.30
5942 10571 2.046292 GAGAAGGGAGATGGGAAGGAG 58.954 57.143 0.00 0.00 0.00 3.69
5943 10572 1.344496 GGAGAAGGGAGATGGGAAGGA 60.344 57.143 0.00 0.00 0.00 3.36
5944 10573 1.135960 GGAGAAGGGAGATGGGAAGG 58.864 60.000 0.00 0.00 0.00 3.46
5945 10574 1.488393 GTGGAGAAGGGAGATGGGAAG 59.512 57.143 0.00 0.00 0.00 3.46
5946 10575 1.584724 GTGGAGAAGGGAGATGGGAA 58.415 55.000 0.00 0.00 0.00 3.97
5947 10576 3.324246 GTGGAGAAGGGAGATGGGA 57.676 57.895 0.00 0.00 0.00 4.37



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.