Multiple sequence alignment - TraesCS2B01G458400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G458400 chr2B 100.000 5251 0 0 1 5251 653015514 653020764 0.000000e+00 9697.0
1 TraesCS2B01G458400 chr2B 85.920 625 55 17 1 602 410192765 410193379 2.060000e-178 636.0
2 TraesCS2B01G458400 chr2D 89.586 1402 65 36 3233 4623 546210846 546212177 0.000000e+00 1705.0
3 TraesCS2B01G458400 chr2D 89.973 1127 59 24 682 1775 546208190 546209295 0.000000e+00 1406.0
4 TraesCS2B01G458400 chr2D 87.607 815 34 23 1938 2724 546209444 546210219 0.000000e+00 883.0
5 TraesCS2B01G458400 chr2D 86.610 702 41 18 4597 5251 546212182 546212877 0.000000e+00 726.0
6 TraesCS2B01G458400 chr2D 89.921 506 23 9 2744 3234 546210193 546210685 1.240000e-175 627.0
7 TraesCS2B01G458400 chr2D 81.905 420 35 20 4624 5031 546214196 546214586 3.050000e-82 316.0
8 TraesCS2B01G458400 chr2D 100.000 76 0 0 1819 1894 546209361 546209436 1.970000e-29 141.0
9 TraesCS2B01G458400 chr2A 85.586 1443 90 51 3194 4565 687051065 687052460 0.000000e+00 1404.0
10 TraesCS2B01G458400 chr2A 85.572 1206 82 50 983 2128 687048933 687050106 0.000000e+00 1179.0
11 TraesCS2B01G458400 chr2A 89.714 875 38 18 2284 3147 687050221 687051054 0.000000e+00 1070.0
12 TraesCS2B01G458400 chr2A 85.140 821 73 19 3771 4565 687152359 687153156 0.000000e+00 795.0
13 TraesCS2B01G458400 chr2A 86.177 586 37 13 4702 5249 687053242 687053821 1.260000e-165 593.0
14 TraesCS2B01G458400 chr2A 89.610 385 26 6 4665 5040 687153801 687154180 1.320000e-130 477.0
15 TraesCS2B01G458400 chr2A 89.205 352 22 7 3214 3564 221982023 221981687 4.860000e-115 425.0
16 TraesCS2B01G458400 chr2A 88.146 329 17 11 682 995 687048569 687048890 6.420000e-99 372.0
17 TraesCS2B01G458400 chr2A 82.632 190 14 8 5081 5251 687154391 687154580 3.280000e-32 150.0
18 TraesCS2B01G458400 chr2A 85.811 148 9 6 3499 3642 687173861 687174000 4.240000e-31 147.0
19 TraesCS2B01G458400 chr2A 78.947 228 15 12 3549 3746 687151608 687151832 1.990000e-24 124.0
20 TraesCS2B01G458400 chr2A 85.000 60 9 0 623 682 59070746 59070805 1.580000e-05 62.1
21 TraesCS2B01G458400 chr4B 88.026 618 50 16 1 602 163843040 163842431 0.000000e+00 710.0
22 TraesCS2B01G458400 chr4B 84.474 380 37 11 239 602 41775020 41775393 6.470000e-94 355.0
23 TraesCS2B01G458400 chr4B 100.000 39 0 0 1821 1859 632835109 632835071 7.290000e-09 73.1
24 TraesCS2B01G458400 chr3B 85.831 614 68 12 1 602 713987431 713986825 7.420000e-178 634.0
25 TraesCS2B01G458400 chr3B 83.388 608 59 23 1 600 380885801 380886374 4.660000e-145 525.0
26 TraesCS2B01G458400 chr3B 89.489 352 21 7 3214 3564 739879931 739879595 1.040000e-116 431.0
27 TraesCS2B01G458400 chr3B 90.323 62 6 0 623 684 798974311 798974250 1.210000e-11 82.4
28 TraesCS2B01G458400 chr3D 85.413 617 66 11 1 603 609902453 609903059 2.080000e-173 619.0
29 TraesCS2B01G458400 chr7B 84.384 666 48 23 1236 1859 306216469 306215818 2.090000e-168 603.0
30 TraesCS2B01G458400 chr7B 89.205 352 22 7 3214 3564 611737616 611737280 4.860000e-115 425.0
31 TraesCS2B01G458400 chr7B 91.803 61 5 0 623 683 666502276 666502216 9.370000e-13 86.1
32 TraesCS2B01G458400 chr4A 85.505 614 43 23 1239 1820 592048485 592047886 2.710000e-167 599.0
33 TraesCS2B01G458400 chr4A 82.097 620 67 16 2 602 656115901 656115307 1.700000e-134 490.0
34 TraesCS2B01G458400 chr4A 89.205 352 22 9 3214 3564 332965473 332965809 4.860000e-115 425.0
35 TraesCS2B01G458400 chr4A 88.920 352 23 7 3214 3564 332924113 332924449 2.260000e-113 420.0
36 TraesCS2B01G458400 chr4A 88.920 352 23 7 3214 3564 704408687 704408351 2.260000e-113 420.0
37 TraesCS2B01G458400 chr4A 91.503 153 11 2 2316 2467 705512246 705512095 5.330000e-50 209.0
38 TraesCS2B01G458400 chr4A 94.872 39 2 0 1821 1859 592047871 592047833 1.580000e-05 62.1
39 TraesCS2B01G458400 chr6A 83.756 671 46 25 1236 1859 32533669 32533015 1.270000e-160 577.0
40 TraesCS2B01G458400 chr6A 83.607 671 47 25 1236 1859 32426073 32425419 5.900000e-159 571.0
41 TraesCS2B01G458400 chr6A 83.607 671 47 25 1236 1859 32559861 32559207 5.900000e-159 571.0
42 TraesCS2B01G458400 chr6A 83.308 671 49 27 1236 1859 588756298 588756952 1.280000e-155 560.0
43 TraesCS2B01G458400 chr6A 89.205 352 22 7 3214 3564 47993107 47992771 4.860000e-115 425.0
44 TraesCS2B01G458400 chr6A 87.427 342 29 8 3215 3555 62450751 62450423 1.070000e-101 381.0
45 TraesCS2B01G458400 chr6A 92.147 191 14 1 2299 2488 496016098 496015908 8.670000e-68 268.0
46 TraesCS2B01G458400 chr6A 90.419 167 16 0 1268 1434 496016805 496016639 2.460000e-53 220.0
47 TraesCS2B01G458400 chr1B 85.902 532 58 10 62 581 429207404 429206878 7.690000e-153 551.0
48 TraesCS2B01G458400 chr1B 84.283 579 74 10 31 600 384247565 384248135 2.760000e-152 549.0
49 TraesCS2B01G458400 chr1B 81.922 614 47 31 1297 1867 146428112 146427520 1.330000e-125 460.0
50 TraesCS2B01G458400 chr1B 89.174 351 22 7 3214 3563 650783573 650783238 1.750000e-114 424.0
51 TraesCS2B01G458400 chr1B 91.525 59 5 0 623 681 191011782 191011840 1.210000e-11 82.4
52 TraesCS2B01G458400 chr1A 85.094 530 59 13 79 602 396263935 396263420 1.680000e-144 523.0
53 TraesCS2B01G458400 chr1A 88.545 323 22 6 3242 3564 139356104 139356411 1.380000e-100 377.0
54 TraesCS2B01G458400 chr6B 82.820 617 64 27 1 602 125348358 125348947 1.010000e-141 514.0
55 TraesCS2B01G458400 chr6B 89.773 352 20 7 3214 3564 14048207 14047871 2.250000e-118 436.0
56 TraesCS2B01G458400 chr6B 90.576 191 17 1 2299 2488 532902632 532902442 8.730000e-63 252.0
57 TraesCS2B01G458400 chr6B 89.831 59 6 0 623 681 720099154 720099212 5.640000e-10 76.8
58 TraesCS2B01G458400 chr5B 83.276 586 63 16 28 602 45705157 45705718 1.690000e-139 507.0
59 TraesCS2B01G458400 chr5B 88.920 352 23 7 3214 3564 505280609 505280273 2.260000e-113 420.0
60 TraesCS2B01G458400 chr5B 88.953 344 22 7 3214 3556 598232612 598232284 1.360000e-110 411.0
61 TraesCS2B01G458400 chr5B 85.861 389 46 7 31 414 333199676 333199292 6.330000e-109 405.0
62 TraesCS2B01G458400 chr7A 89.489 352 21 7 3214 3564 621159346 621159010 1.040000e-116 431.0
63 TraesCS2B01G458400 chr7A 90.196 153 13 2 2316 2467 22939740 22939589 1.150000e-46 198.0
64 TraesCS2B01G458400 chr7A 86.441 59 8 0 623 681 21183439 21183497 1.220000e-06 65.8
65 TraesCS2B01G458400 chr5A 89.429 350 21 8 3214 3562 516904640 516904974 1.350000e-115 427.0
66 TraesCS2B01G458400 chr6D 91.099 191 16 1 2299 2488 347434313 347434503 1.880000e-64 257.0
67 TraesCS2B01G458400 chr6D 91.045 134 12 0 2335 2468 423816342 423816209 1.160000e-41 182.0
68 TraesCS2B01G458400 chr7D 87.640 178 19 3 2291 2467 22588456 22588281 2.480000e-48 204.0
69 TraesCS2B01G458400 chrUn 93.220 59 4 0 623 681 87031828 87031770 2.600000e-13 87.9
70 TraesCS2B01G458400 chrUn 88.136 59 7 0 623 681 39265182 39265124 2.620000e-08 71.3
71 TraesCS2B01G458400 chr3A 93.220 59 4 0 623 681 482091832 482091890 2.600000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G458400 chr2B 653015514 653020764 5250 False 9697.000000 9697 100.000000 1 5251 1 chr2B.!!$F2 5250
1 TraesCS2B01G458400 chr2B 410192765 410193379 614 False 636.000000 636 85.920000 1 602 1 chr2B.!!$F1 601
2 TraesCS2B01G458400 chr2D 546208190 546214586 6396 False 829.142857 1705 89.371714 682 5251 7 chr2D.!!$F1 4569
3 TraesCS2B01G458400 chr2A 687048569 687053821 5252 False 923.600000 1404 87.039000 682 5249 5 chr2A.!!$F3 4567
4 TraesCS2B01G458400 chr2A 687151608 687154580 2972 False 386.500000 795 84.082250 3549 5251 4 chr2A.!!$F4 1702
5 TraesCS2B01G458400 chr4B 163842431 163843040 609 True 710.000000 710 88.026000 1 602 1 chr4B.!!$R1 601
6 TraesCS2B01G458400 chr3B 713986825 713987431 606 True 634.000000 634 85.831000 1 602 1 chr3B.!!$R1 601
7 TraesCS2B01G458400 chr3B 380885801 380886374 573 False 525.000000 525 83.388000 1 600 1 chr3B.!!$F1 599
8 TraesCS2B01G458400 chr3D 609902453 609903059 606 False 619.000000 619 85.413000 1 603 1 chr3D.!!$F1 602
9 TraesCS2B01G458400 chr7B 306215818 306216469 651 True 603.000000 603 84.384000 1236 1859 1 chr7B.!!$R1 623
10 TraesCS2B01G458400 chr4A 656115307 656115901 594 True 490.000000 490 82.097000 2 602 1 chr4A.!!$R1 600
11 TraesCS2B01G458400 chr4A 592047833 592048485 652 True 330.550000 599 90.188500 1239 1859 2 chr4A.!!$R4 620
12 TraesCS2B01G458400 chr6A 32533015 32533669 654 True 577.000000 577 83.756000 1236 1859 1 chr6A.!!$R2 623
13 TraesCS2B01G458400 chr6A 32425419 32426073 654 True 571.000000 571 83.607000 1236 1859 1 chr6A.!!$R1 623
14 TraesCS2B01G458400 chr6A 32559207 32559861 654 True 571.000000 571 83.607000 1236 1859 1 chr6A.!!$R3 623
15 TraesCS2B01G458400 chr6A 588756298 588756952 654 False 560.000000 560 83.308000 1236 1859 1 chr6A.!!$F1 623
16 TraesCS2B01G458400 chr6A 496015908 496016805 897 True 244.000000 268 91.283000 1268 2488 2 chr6A.!!$R6 1220
17 TraesCS2B01G458400 chr1B 429206878 429207404 526 True 551.000000 551 85.902000 62 581 1 chr1B.!!$R2 519
18 TraesCS2B01G458400 chr1B 384247565 384248135 570 False 549.000000 549 84.283000 31 600 1 chr1B.!!$F2 569
19 TraesCS2B01G458400 chr1B 146427520 146428112 592 True 460.000000 460 81.922000 1297 1867 1 chr1B.!!$R1 570
20 TraesCS2B01G458400 chr1A 396263420 396263935 515 True 523.000000 523 85.094000 79 602 1 chr1A.!!$R1 523
21 TraesCS2B01G458400 chr6B 125348358 125348947 589 False 514.000000 514 82.820000 1 602 1 chr6B.!!$F1 601
22 TraesCS2B01G458400 chr5B 45705157 45705718 561 False 507.000000 507 83.276000 28 602 1 chr5B.!!$F1 574

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
630 663 0.036164 TGCACATAAGGAAGCCACGT 59.964 50.0 0.00 0.0 0.00 4.49 F
2202 2701 0.031043 TTCTTTCGTCTTGCGTCGGA 59.969 50.0 0.00 0.0 42.13 4.55 F
2289 2788 0.173708 TGGGTTTGTGCGTGGTTTTC 59.826 50.0 0.00 0.0 0.00 2.29 F
2872 3446 0.181114 ACAAGCAGAGCCTGTGTTGA 59.819 50.0 17.78 0.0 31.54 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2244 2743 0.041576 CAATGATGCGACGGCTCATG 60.042 55.0 0.00 0.0 37.22 3.07 R
3866 5168 0.175760 TCAGGCGGCATGAGTAGTTC 59.824 55.0 13.97 0.0 0.00 3.01 R
3902 5204 0.975040 AGCTGGCGAGTGAGAAGGAT 60.975 55.0 0.00 0.0 0.00 3.24 R
4565 5920 0.318614 AATTGCGCGGGAAACAGTTG 60.319 50.0 8.83 0.0 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 85 3.443045 CCTTGAAATGGGCGCGCT 61.443 61.111 32.29 10.98 0.00 5.92
132 150 1.940613 GAGCAGTTCAAAGTTCGGTGT 59.059 47.619 0.00 0.00 0.00 4.16
299 332 4.731503 CGACGTCGGCGACTTCGT 62.732 66.667 41.87 33.03 45.01 3.85
327 360 3.826637 CGACTTCTTCGGCCCTTAA 57.173 52.632 0.00 0.00 44.60 1.85
328 361 1.641577 CGACTTCTTCGGCCCTTAAG 58.358 55.000 0.00 0.00 44.60 1.85
329 362 1.067071 CGACTTCTTCGGCCCTTAAGT 60.067 52.381 0.00 1.77 44.60 2.24
330 363 2.612221 CGACTTCTTCGGCCCTTAAGTT 60.612 50.000 0.00 0.00 44.60 2.66
331 364 2.742589 GACTTCTTCGGCCCTTAAGTTG 59.257 50.000 0.00 0.00 30.83 3.16
332 365 2.105993 ACTTCTTCGGCCCTTAAGTTGT 59.894 45.455 0.00 0.31 0.00 3.32
333 366 3.325716 ACTTCTTCGGCCCTTAAGTTGTA 59.674 43.478 0.00 0.00 0.00 2.41
334 367 4.202388 ACTTCTTCGGCCCTTAAGTTGTAA 60.202 41.667 0.00 0.00 0.00 2.41
335 368 4.563140 TCTTCGGCCCTTAAGTTGTAAT 57.437 40.909 0.00 0.00 0.00 1.89
336 369 4.913784 TCTTCGGCCCTTAAGTTGTAATT 58.086 39.130 0.00 0.00 0.00 1.40
337 370 4.698304 TCTTCGGCCCTTAAGTTGTAATTG 59.302 41.667 0.00 0.00 0.00 2.32
338 371 2.750712 TCGGCCCTTAAGTTGTAATTGC 59.249 45.455 0.00 0.00 0.00 3.56
339 372 2.477189 CGGCCCTTAAGTTGTAATTGCG 60.477 50.000 0.00 0.00 0.00 4.85
340 373 2.159296 GGCCCTTAAGTTGTAATTGCGG 60.159 50.000 0.97 0.00 0.00 5.69
341 374 2.490509 GCCCTTAAGTTGTAATTGCGGT 59.509 45.455 0.97 0.00 0.00 5.68
342 375 3.427098 GCCCTTAAGTTGTAATTGCGGTC 60.427 47.826 0.97 0.00 0.00 4.79
343 376 3.128068 CCCTTAAGTTGTAATTGCGGTCC 59.872 47.826 0.97 0.00 0.00 4.46
344 377 4.007659 CCTTAAGTTGTAATTGCGGTCCT 58.992 43.478 0.97 0.00 0.00 3.85
345 378 4.457949 CCTTAAGTTGTAATTGCGGTCCTT 59.542 41.667 0.97 0.00 0.00 3.36
346 379 5.048294 CCTTAAGTTGTAATTGCGGTCCTTT 60.048 40.000 0.97 0.00 0.00 3.11
347 380 4.929819 AAGTTGTAATTGCGGTCCTTTT 57.070 36.364 0.00 0.00 0.00 2.27
348 381 4.929819 AGTTGTAATTGCGGTCCTTTTT 57.070 36.364 0.00 0.00 0.00 1.94
378 411 9.769093 ATAACTTTGCTATGTAAAATGTCGAAC 57.231 29.630 0.00 0.00 0.00 3.95
379 412 7.197071 ACTTTGCTATGTAAAATGTCGAACA 57.803 32.000 0.00 0.00 0.00 3.18
380 413 7.816640 ACTTTGCTATGTAAAATGTCGAACAT 58.183 30.769 3.83 3.83 41.31 2.71
381 414 7.750458 ACTTTGCTATGTAAAATGTCGAACATG 59.250 33.333 8.13 0.00 37.97 3.21
382 415 6.735678 TGCTATGTAAAATGTCGAACATGT 57.264 33.333 8.13 0.00 37.97 3.21
383 416 6.771076 TGCTATGTAAAATGTCGAACATGTC 58.229 36.000 0.00 0.00 37.97 3.06
396 429 4.584029 GAACATGTCGAATATATGCCCG 57.416 45.455 0.00 0.00 30.12 6.13
397 430 2.972625 ACATGTCGAATATATGCCCGG 58.027 47.619 0.00 0.00 30.12 5.73
398 431 2.301870 ACATGTCGAATATATGCCCGGT 59.698 45.455 0.00 0.00 30.12 5.28
399 432 3.244422 ACATGTCGAATATATGCCCGGTT 60.244 43.478 0.00 0.00 30.12 4.44
400 433 3.478857 TGTCGAATATATGCCCGGTTT 57.521 42.857 0.00 0.00 0.00 3.27
401 434 3.135225 TGTCGAATATATGCCCGGTTTG 58.865 45.455 0.00 0.00 0.00 2.93
402 435 2.095919 GTCGAATATATGCCCGGTTTGC 60.096 50.000 0.00 0.00 0.00 3.68
403 436 1.199097 CGAATATATGCCCGGTTTGCC 59.801 52.381 0.00 0.00 0.00 4.52
404 437 2.235016 GAATATATGCCCGGTTTGCCA 58.765 47.619 0.00 0.00 34.09 4.92
405 438 2.373335 ATATATGCCCGGTTTGCCAA 57.627 45.000 0.00 0.00 34.09 4.52
406 439 2.145397 TATATGCCCGGTTTGCCAAA 57.855 45.000 0.00 0.00 34.09 3.28
407 440 0.534873 ATATGCCCGGTTTGCCAAAC 59.465 50.000 11.88 11.88 40.65 2.93
408 441 0.540830 TATGCCCGGTTTGCCAAACT 60.541 50.000 18.97 1.84 41.14 2.66
409 442 1.406860 ATGCCCGGTTTGCCAAACTT 61.407 50.000 18.97 0.00 41.14 2.66
410 443 1.145156 GCCCGGTTTGCCAAACTTT 59.855 52.632 18.97 0.00 41.14 2.66
411 444 0.389757 GCCCGGTTTGCCAAACTTTA 59.610 50.000 18.97 0.00 41.14 1.85
412 445 1.604438 GCCCGGTTTGCCAAACTTTAG 60.604 52.381 18.97 8.87 41.14 1.85
413 446 1.604438 CCCGGTTTGCCAAACTTTAGC 60.604 52.381 18.97 2.26 41.14 3.09
414 447 1.604438 CCGGTTTGCCAAACTTTAGCC 60.604 52.381 18.97 1.51 41.14 3.93
415 448 1.067821 CGGTTTGCCAAACTTTAGCCA 59.932 47.619 18.97 0.00 41.14 4.75
416 449 2.482142 CGGTTTGCCAAACTTTAGCCAA 60.482 45.455 18.97 0.00 41.14 4.52
417 450 3.536570 GGTTTGCCAAACTTTAGCCAAA 58.463 40.909 18.97 0.00 41.14 3.28
418 451 4.133820 GGTTTGCCAAACTTTAGCCAAAT 58.866 39.130 18.97 0.00 41.14 2.32
419 452 5.301555 GGTTTGCCAAACTTTAGCCAAATA 58.698 37.500 18.97 0.00 41.14 1.40
420 453 5.760743 GGTTTGCCAAACTTTAGCCAAATAA 59.239 36.000 18.97 0.00 41.14 1.40
421 454 6.429692 GGTTTGCCAAACTTTAGCCAAATAAT 59.570 34.615 18.97 0.00 41.14 1.28
422 455 7.040755 GGTTTGCCAAACTTTAGCCAAATAATT 60.041 33.333 18.97 0.00 41.14 1.40
423 456 8.349245 GTTTGCCAAACTTTAGCCAAATAATTT 58.651 29.630 12.98 0.00 38.35 1.82
424 457 7.432350 TGCCAAACTTTAGCCAAATAATTTG 57.568 32.000 0.00 0.00 40.32 2.32
425 458 6.995091 TGCCAAACTTTAGCCAAATAATTTGT 59.005 30.769 0.00 0.00 38.98 2.83
426 459 7.500559 TGCCAAACTTTAGCCAAATAATTTGTT 59.499 29.630 0.00 0.00 38.98 2.83
427 460 8.349245 GCCAAACTTTAGCCAAATAATTTGTTT 58.651 29.630 0.00 0.00 38.98 2.83
451 484 9.928236 TTTAATTTGACAAACTTTGCTAAATGC 57.072 25.926 1.94 0.00 43.25 3.56
452 485 5.982465 TTTGACAAACTTTGCTAAATGCC 57.018 34.783 1.14 0.00 42.00 4.40
453 486 4.935352 TGACAAACTTTGCTAAATGCCT 57.065 36.364 1.14 0.00 42.00 4.75
454 487 5.275067 TGACAAACTTTGCTAAATGCCTT 57.725 34.783 1.14 0.00 42.00 4.35
455 488 5.669477 TGACAAACTTTGCTAAATGCCTTT 58.331 33.333 1.14 0.00 42.00 3.11
456 489 5.752955 TGACAAACTTTGCTAAATGCCTTTC 59.247 36.000 1.14 0.00 42.00 2.62
457 490 5.917462 ACAAACTTTGCTAAATGCCTTTCT 58.083 33.333 1.14 0.00 42.00 2.52
458 491 6.348498 ACAAACTTTGCTAAATGCCTTTCTT 58.652 32.000 1.14 0.00 42.00 2.52
459 492 6.823182 ACAAACTTTGCTAAATGCCTTTCTTT 59.177 30.769 1.14 0.00 42.00 2.52
460 493 7.336679 ACAAACTTTGCTAAATGCCTTTCTTTT 59.663 29.630 1.14 0.00 42.00 2.27
461 494 8.825745 CAAACTTTGCTAAATGCCTTTCTTTTA 58.174 29.630 0.00 0.00 42.00 1.52
462 495 8.956533 AACTTTGCTAAATGCCTTTCTTTTAA 57.043 26.923 0.00 0.00 42.00 1.52
463 496 8.956533 ACTTTGCTAAATGCCTTTCTTTTAAA 57.043 26.923 0.00 0.00 42.00 1.52
464 497 9.389755 ACTTTGCTAAATGCCTTTCTTTTAAAA 57.610 25.926 0.00 0.00 42.00 1.52
466 499 9.995957 TTTGCTAAATGCCTTTCTTTTAAAAAC 57.004 25.926 1.66 0.00 42.00 2.43
467 500 8.723942 TGCTAAATGCCTTTCTTTTAAAAACA 57.276 26.923 1.66 0.00 42.00 2.83
468 501 9.336171 TGCTAAATGCCTTTCTTTTAAAAACAT 57.664 25.926 1.66 0.00 42.00 2.71
474 507 8.132604 TGCCTTTCTTTTAAAAACATAAACGG 57.867 30.769 1.66 5.84 0.00 4.44
475 508 7.067116 GCCTTTCTTTTAAAAACATAAACGGC 58.933 34.615 1.66 10.31 0.00 5.68
476 509 7.277917 CCTTTCTTTTAAAAACATAAACGGCG 58.722 34.615 4.80 4.80 0.00 6.46
477 510 7.043258 CCTTTCTTTTAAAAACATAAACGGCGT 60.043 33.333 6.77 6.77 0.00 5.68
478 511 8.847444 TTTCTTTTAAAAACATAAACGGCGTA 57.153 26.923 15.20 0.00 0.00 4.42
479 512 9.460906 TTTCTTTTAAAAACATAAACGGCGTAT 57.539 25.926 15.20 0.00 0.00 3.06
480 513 8.437443 TCTTTTAAAAACATAAACGGCGTATG 57.563 30.769 15.20 17.24 35.47 2.39
481 514 8.074972 TCTTTTAAAAACATAAACGGCGTATGT 58.925 29.630 19.65 19.65 42.63 2.29
482 515 7.550064 TTTAAAAACATAAACGGCGTATGTG 57.450 32.000 24.31 19.15 40.49 3.21
483 516 3.750639 AAACATAAACGGCGTATGTGG 57.249 42.857 24.31 11.95 40.49 4.17
484 517 1.658994 ACATAAACGGCGTATGTGGG 58.341 50.000 23.33 10.39 40.00 4.61
485 518 0.941542 CATAAACGGCGTATGTGGGG 59.058 55.000 15.20 0.00 0.00 4.96
486 519 0.816421 ATAAACGGCGTATGTGGGGC 60.816 55.000 15.20 0.00 0.00 5.80
508 541 4.329545 GTGGGTCAGCGGCTGGAA 62.330 66.667 28.18 8.76 31.51 3.53
509 542 3.565214 TGGGTCAGCGGCTGGAAA 61.565 61.111 28.18 7.98 31.51 3.13
510 543 3.056328 GGGTCAGCGGCTGGAAAC 61.056 66.667 28.18 19.00 31.51 2.78
511 544 3.056328 GGTCAGCGGCTGGAAACC 61.056 66.667 28.18 23.52 31.51 3.27
512 545 3.056328 GTCAGCGGCTGGAAACCC 61.056 66.667 28.18 7.40 31.51 4.11
513 546 3.565214 TCAGCGGCTGGAAACCCA 61.565 61.111 28.18 5.66 31.51 4.51
514 547 3.365265 CAGCGGCTGGAAACCCAC 61.365 66.667 22.11 0.00 0.00 4.61
515 548 3.570212 AGCGGCTGGAAACCCACT 61.570 61.111 0.00 0.00 0.00 4.00
516 549 3.056328 GCGGCTGGAAACCCACTC 61.056 66.667 0.00 0.00 0.00 3.51
517 550 2.742372 CGGCTGGAAACCCACTCG 60.742 66.667 0.00 0.00 0.00 4.18
518 551 3.056328 GGCTGGAAACCCACTCGC 61.056 66.667 0.00 0.00 0.00 5.03
519 552 3.056328 GCTGGAAACCCACTCGCC 61.056 66.667 0.00 0.00 0.00 5.54
520 553 2.359975 CTGGAAACCCACTCGCCC 60.360 66.667 0.00 0.00 0.00 6.13
521 554 3.920093 CTGGAAACCCACTCGCCCC 62.920 68.421 0.00 0.00 0.00 5.80
522 555 4.735358 GGAAACCCACTCGCCCCC 62.735 72.222 0.00 0.00 0.00 5.40
523 556 3.961414 GAAACCCACTCGCCCCCA 61.961 66.667 0.00 0.00 0.00 4.96
524 557 4.280019 AAACCCACTCGCCCCCAC 62.280 66.667 0.00 0.00 0.00 4.61
534 567 3.378602 GCCCCCACGCCGATTTTT 61.379 61.111 0.00 0.00 0.00 1.94
535 568 2.047443 GCCCCCACGCCGATTTTTA 61.047 57.895 0.00 0.00 0.00 1.52
536 569 2.000215 GCCCCCACGCCGATTTTTAG 62.000 60.000 0.00 0.00 0.00 1.85
537 570 1.431845 CCCCACGCCGATTTTTAGC 59.568 57.895 0.00 0.00 0.00 3.09
541 574 2.350760 CGCCGATTTTTAGCGCCG 60.351 61.111 2.29 0.00 43.72 6.46
542 575 2.024163 GCCGATTTTTAGCGCCGG 59.976 61.111 13.63 13.63 42.74 6.13
543 576 2.024163 CCGATTTTTAGCGCCGGC 59.976 61.111 19.07 19.07 40.37 6.13
563 596 2.750237 GTCCCAGGCGGCGATTTT 60.750 61.111 12.98 0.00 0.00 1.82
564 597 1.450669 GTCCCAGGCGGCGATTTTA 60.451 57.895 12.98 0.00 0.00 1.52
565 598 1.450669 TCCCAGGCGGCGATTTTAC 60.451 57.895 12.98 0.00 0.00 2.01
566 599 2.707039 CCAGGCGGCGATTTTACG 59.293 61.111 12.98 0.00 0.00 3.18
567 600 1.812093 CCAGGCGGCGATTTTACGA 60.812 57.895 12.98 0.00 35.09 3.43
568 601 1.636340 CAGGCGGCGATTTTACGAG 59.364 57.895 12.98 0.00 35.09 4.18
569 602 1.082117 CAGGCGGCGATTTTACGAGT 61.082 55.000 12.98 0.00 35.09 4.18
570 603 0.804933 AGGCGGCGATTTTACGAGTC 60.805 55.000 12.98 0.00 35.09 3.36
571 604 1.634753 GCGGCGATTTTACGAGTCC 59.365 57.895 12.98 0.00 35.09 3.85
572 605 1.759293 GCGGCGATTTTACGAGTCCC 61.759 60.000 12.98 0.00 35.09 4.46
573 606 1.149964 CGGCGATTTTACGAGTCCCC 61.150 60.000 0.00 0.00 35.09 4.81
574 607 0.177373 GGCGATTTTACGAGTCCCCT 59.823 55.000 0.00 0.00 35.09 4.79
575 608 1.406477 GGCGATTTTACGAGTCCCCTT 60.406 52.381 0.00 0.00 35.09 3.95
576 609 2.159057 GGCGATTTTACGAGTCCCCTTA 60.159 50.000 0.00 0.00 35.09 2.69
577 610 3.121544 GCGATTTTACGAGTCCCCTTAG 58.878 50.000 0.00 0.00 35.09 2.18
578 611 3.714391 CGATTTTACGAGTCCCCTTAGG 58.286 50.000 0.00 0.00 35.09 2.69
579 612 3.492137 CGATTTTACGAGTCCCCTTAGGG 60.492 52.174 11.08 11.08 44.88 3.53
598 631 3.805267 CAACGGCTGGAGATGCTC 58.195 61.111 0.00 0.00 0.00 4.26
599 632 1.220206 CAACGGCTGGAGATGCTCT 59.780 57.895 0.00 0.00 0.00 4.09
600 633 0.392193 CAACGGCTGGAGATGCTCTT 60.392 55.000 0.00 0.00 0.00 2.85
601 634 1.134699 CAACGGCTGGAGATGCTCTTA 60.135 52.381 0.00 0.00 0.00 2.10
602 635 0.461961 ACGGCTGGAGATGCTCTTAC 59.538 55.000 0.00 0.00 0.00 2.34
603 636 0.461548 CGGCTGGAGATGCTCTTACA 59.538 55.000 0.00 0.00 0.00 2.41
604 637 1.537776 CGGCTGGAGATGCTCTTACAG 60.538 57.143 0.00 11.13 35.92 2.74
621 654 1.376543 CAGCCTGACTGCACATAAGG 58.623 55.000 0.00 0.00 40.19 2.69
622 655 1.065926 CAGCCTGACTGCACATAAGGA 60.066 52.381 1.16 0.00 40.19 3.36
623 656 1.630369 AGCCTGACTGCACATAAGGAA 59.370 47.619 1.16 0.00 0.00 3.36
624 657 2.012673 GCCTGACTGCACATAAGGAAG 58.987 52.381 1.16 0.00 0.00 3.46
625 658 2.012673 CCTGACTGCACATAAGGAAGC 58.987 52.381 0.00 0.00 0.00 3.86
626 659 2.012673 CTGACTGCACATAAGGAAGCC 58.987 52.381 0.00 0.00 0.00 4.35
627 660 1.350684 TGACTGCACATAAGGAAGCCA 59.649 47.619 0.00 0.00 0.00 4.75
628 661 1.740025 GACTGCACATAAGGAAGCCAC 59.260 52.381 0.00 0.00 0.00 5.01
629 662 0.729116 CTGCACATAAGGAAGCCACG 59.271 55.000 0.00 0.00 0.00 4.94
630 663 0.036164 TGCACATAAGGAAGCCACGT 59.964 50.000 0.00 0.00 0.00 4.49
631 664 1.276705 TGCACATAAGGAAGCCACGTA 59.723 47.619 0.00 0.00 0.00 3.57
632 665 1.664151 GCACATAAGGAAGCCACGTAC 59.336 52.381 0.00 0.00 0.00 3.67
633 666 1.924524 CACATAAGGAAGCCACGTACG 59.075 52.381 15.01 15.01 0.00 3.67
634 667 0.928229 CATAAGGAAGCCACGTACGC 59.072 55.000 16.72 0.00 0.00 4.42
635 668 0.526954 ATAAGGAAGCCACGTACGCG 60.527 55.000 16.72 3.53 44.93 6.01
636 669 2.546645 TAAGGAAGCCACGTACGCGG 62.547 60.000 17.94 17.94 43.45 6.46
638 671 4.424566 GAAGCCACGTACGCGGGA 62.425 66.667 25.61 0.00 45.97 5.14
639 672 4.430765 AAGCCACGTACGCGGGAG 62.431 66.667 25.61 2.82 45.97 4.30
651 684 2.202932 CGGGAGCACGGATGGAAG 60.203 66.667 0.00 0.00 0.00 3.46
652 685 2.514824 GGGAGCACGGATGGAAGC 60.515 66.667 0.00 0.00 0.00 3.86
653 686 2.268920 GGAGCACGGATGGAAGCA 59.731 61.111 0.00 0.00 0.00 3.91
654 687 1.153086 GGAGCACGGATGGAAGCAT 60.153 57.895 0.00 0.00 0.00 3.79
655 688 1.442526 GGAGCACGGATGGAAGCATG 61.443 60.000 0.00 0.00 0.00 4.06
656 689 0.462581 GAGCACGGATGGAAGCATGA 60.463 55.000 0.00 0.00 0.00 3.07
657 690 0.463295 AGCACGGATGGAAGCATGAG 60.463 55.000 0.00 0.00 0.00 2.90
658 691 0.462581 GCACGGATGGAAGCATGAGA 60.463 55.000 0.00 0.00 0.00 3.27
659 692 2.013563 GCACGGATGGAAGCATGAGAA 61.014 52.381 0.00 0.00 0.00 2.87
660 693 1.938577 CACGGATGGAAGCATGAGAAG 59.061 52.381 0.00 0.00 0.00 2.85
661 694 1.134280 ACGGATGGAAGCATGAGAAGG 60.134 52.381 0.00 0.00 0.00 3.46
662 695 1.813092 CGGATGGAAGCATGAGAAGGG 60.813 57.143 0.00 0.00 0.00 3.95
663 696 1.492176 GGATGGAAGCATGAGAAGGGA 59.508 52.381 0.00 0.00 0.00 4.20
664 697 2.486907 GGATGGAAGCATGAGAAGGGAG 60.487 54.545 0.00 0.00 0.00 4.30
665 698 0.254178 TGGAAGCATGAGAAGGGAGC 59.746 55.000 0.00 0.00 0.00 4.70
666 699 0.254178 GGAAGCATGAGAAGGGAGCA 59.746 55.000 0.00 0.00 0.00 4.26
667 700 1.340405 GGAAGCATGAGAAGGGAGCAA 60.340 52.381 0.00 0.00 0.00 3.91
668 701 2.015587 GAAGCATGAGAAGGGAGCAAG 58.984 52.381 0.00 0.00 0.00 4.01
669 702 0.394080 AGCATGAGAAGGGAGCAAGC 60.394 55.000 0.00 0.00 0.00 4.01
670 703 0.679002 GCATGAGAAGGGAGCAAGCA 60.679 55.000 0.00 0.00 0.00 3.91
671 704 1.830279 CATGAGAAGGGAGCAAGCAA 58.170 50.000 0.00 0.00 0.00 3.91
672 705 1.743958 CATGAGAAGGGAGCAAGCAAG 59.256 52.381 0.00 0.00 0.00 4.01
673 706 0.767375 TGAGAAGGGAGCAAGCAAGT 59.233 50.000 0.00 0.00 0.00 3.16
674 707 1.271054 TGAGAAGGGAGCAAGCAAGTC 60.271 52.381 0.00 0.00 0.00 3.01
675 708 1.003003 GAGAAGGGAGCAAGCAAGTCT 59.997 52.381 0.00 0.00 0.00 3.24
676 709 1.423161 AGAAGGGAGCAAGCAAGTCTT 59.577 47.619 0.00 0.00 34.78 3.01
695 728 2.604912 TGTCCAGAGTGGCTCTAAGA 57.395 50.000 0.00 0.00 38.99 2.10
707 740 1.488393 GCTCTAAGATGGAACCCTGCT 59.512 52.381 0.00 0.00 0.00 4.24
724 757 4.954118 TGTGTCGGCCTCACCCCT 62.954 66.667 20.07 0.00 35.25 4.79
790 826 5.410602 GCTCCTCCTATATATCCATCCCAT 58.589 45.833 0.00 0.00 0.00 4.00
793 829 5.608437 TCCTCCTATATATCCATCCCATTGC 59.392 44.000 0.00 0.00 0.00 3.56
813 855 1.977544 CCCCCTCGTCGTCTCACTT 60.978 63.158 0.00 0.00 0.00 3.16
814 856 1.507174 CCCCTCGTCGTCTCACTTC 59.493 63.158 0.00 0.00 0.00 3.01
831 876 1.617018 TTCCACCAGGCAGATCGAGG 61.617 60.000 0.00 0.00 33.74 4.63
1099 1205 0.945813 CCCTCTCTACTCGTAAGCCG 59.054 60.000 0.00 0.00 38.13 5.52
1117 1223 4.475135 GCCGGCCAACTCCCTCTC 62.475 72.222 18.11 0.00 0.00 3.20
1118 1224 3.787001 CCGGCCAACTCCCTCTCC 61.787 72.222 2.24 0.00 0.00 3.71
1119 1225 2.685380 CGGCCAACTCCCTCTCCT 60.685 66.667 2.24 0.00 0.00 3.69
1140 1246 9.142014 TCTCCTCTCTTCTTTCTTTATATCTGG 57.858 37.037 0.00 0.00 0.00 3.86
1141 1247 7.731054 TCCTCTCTTCTTTCTTTATATCTGGC 58.269 38.462 0.00 0.00 0.00 4.85
1142 1248 6.644592 CCTCTCTTCTTTCTTTATATCTGGCG 59.355 42.308 0.00 0.00 0.00 5.69
1143 1249 7.348080 TCTCTTCTTTCTTTATATCTGGCGA 57.652 36.000 0.00 0.00 0.00 5.54
1144 1250 7.429633 TCTCTTCTTTCTTTATATCTGGCGAG 58.570 38.462 0.00 0.00 0.00 5.03
1149 1255 6.490381 TCTTTCTTTATATCTGGCGAGCTCTA 59.510 38.462 12.85 0.00 0.00 2.43
1151 1257 6.201226 TCTTTATATCTGGCGAGCTCTATG 57.799 41.667 12.85 0.00 0.00 2.23
1197 1306 2.251642 GCTCCGGCGTCTTTGTGTT 61.252 57.895 6.01 0.00 0.00 3.32
1198 1307 1.860078 CTCCGGCGTCTTTGTGTTC 59.140 57.895 6.01 0.00 0.00 3.18
1208 1317 1.129624 TCTTTGTGTTCGTGTGTGTGC 59.870 47.619 0.00 0.00 0.00 4.57
1226 1335 2.696893 GCAGGGTAGGGGAGGAGA 59.303 66.667 0.00 0.00 0.00 3.71
1443 1565 4.317444 CCACCACCACGCCCGTAA 62.317 66.667 0.00 0.00 0.00 3.18
1446 1568 1.907807 ACCACCACGCCCGTAAGTA 60.908 57.895 0.00 0.00 0.00 2.24
1447 1569 1.259840 ACCACCACGCCCGTAAGTAT 61.260 55.000 0.00 0.00 0.00 2.12
1562 1710 1.608336 CAGGTGTACTCGACCCCCA 60.608 63.158 0.00 0.00 33.51 4.96
1564 1712 0.686769 AGGTGTACTCGACCCCCATC 60.687 60.000 0.00 0.00 33.51 3.51
1602 1753 2.675844 TGCTCCGGTCATTTGTTAATCG 59.324 45.455 0.00 0.00 0.00 3.34
1630 1816 1.250840 ATTTGGCCGAGCAAAGGTCC 61.251 55.000 0.00 0.00 30.98 4.46
1656 1842 0.180406 TCTAATCCAAGAAGCCCCGC 59.820 55.000 0.00 0.00 0.00 6.13
1700 1891 6.271857 TCCTACCACCTACTACTACCATCTAG 59.728 46.154 0.00 0.00 0.00 2.43
1701 1892 5.990713 ACCACCTACTACTACCATCTAGT 57.009 43.478 0.00 0.00 0.00 2.57
1702 1893 7.236432 CCTACCACCTACTACTACCATCTAGTA 59.764 44.444 0.00 0.00 0.00 1.82
1716 2057 4.458989 CCATCTAGTAGCATCTCCTGTCTC 59.541 50.000 0.00 0.00 0.00 3.36
1760 2111 2.098770 GGATTCAAGAAGCCTCATGTGC 59.901 50.000 9.72 0.00 43.19 4.57
1814 2230 0.247460 GCTTGGCCCAGGCTAAAAAG 59.753 55.000 11.12 8.71 40.89 2.27
1815 2231 1.632589 CTTGGCCCAGGCTAAAAAGT 58.367 50.000 8.90 0.00 40.89 2.66
1816 2232 1.273327 CTTGGCCCAGGCTAAAAAGTG 59.727 52.381 8.90 0.00 40.89 3.16
1817 2233 0.541764 TGGCCCAGGCTAAAAAGTGG 60.542 55.000 8.89 0.00 41.60 4.00
1894 2342 1.338674 CCTTACCCACGCATTCACTCA 60.339 52.381 0.00 0.00 0.00 3.41
1897 2345 0.603707 ACCCACGCATTCACTCACTG 60.604 55.000 0.00 0.00 0.00 3.66
1898 2346 1.499056 CCACGCATTCACTCACTGC 59.501 57.895 0.00 0.00 0.00 4.40
1900 2348 2.029288 ACGCATTCACTCACTGCCG 61.029 57.895 0.00 0.00 32.24 5.69
1901 2349 2.743752 CGCATTCACTCACTGCCGG 61.744 63.158 0.00 0.00 32.24 6.13
1902 2350 1.375908 GCATTCACTCACTGCCGGA 60.376 57.895 5.05 0.00 0.00 5.14
1903 2351 1.364626 GCATTCACTCACTGCCGGAG 61.365 60.000 5.05 1.84 38.36 4.63
1904 2352 1.078848 ATTCACTCACTGCCGGAGC 60.079 57.895 5.05 0.00 35.79 4.70
1905 2353 1.548357 ATTCACTCACTGCCGGAGCT 61.548 55.000 5.05 0.00 40.80 4.09
1906 2354 2.433838 CACTCACTGCCGGAGCTG 60.434 66.667 5.05 0.00 43.17 4.24
1907 2355 3.699894 ACTCACTGCCGGAGCTGG 61.700 66.667 5.05 0.00 41.92 4.85
1908 2356 3.699894 CTCACTGCCGGAGCTGGT 61.700 66.667 5.05 0.00 41.92 4.00
1909 2357 3.655810 CTCACTGCCGGAGCTGGTC 62.656 68.421 5.05 0.00 41.92 4.02
1910 2358 4.767255 CACTGCCGGAGCTGGTCC 62.767 72.222 15.80 15.80 41.92 4.46
1912 2360 4.463879 CTGCCGGAGCTGGTCCTG 62.464 72.222 22.29 17.32 44.35 3.86
1922 2370 4.720902 TGGTCCTGCCATGCCACG 62.721 66.667 0.00 0.00 43.61 4.94
1924 2372 4.408821 GTCCTGCCATGCCACGGA 62.409 66.667 0.00 0.00 0.00 4.69
1925 2373 4.408821 TCCTGCCATGCCACGGAC 62.409 66.667 0.00 0.00 0.00 4.79
1927 2375 4.758251 CTGCCATGCCACGGACGA 62.758 66.667 0.00 0.00 0.00 4.20
1928 2376 4.094646 TGCCATGCCACGGACGAT 62.095 61.111 0.00 0.00 0.00 3.73
1929 2377 2.824041 GCCATGCCACGGACGATT 60.824 61.111 0.00 0.00 0.00 3.34
1930 2378 2.406616 GCCATGCCACGGACGATTT 61.407 57.895 0.00 0.00 0.00 2.17
1931 2379 1.721487 CCATGCCACGGACGATTTC 59.279 57.895 0.00 0.00 0.00 2.17
1932 2380 1.024046 CCATGCCACGGACGATTTCA 61.024 55.000 0.00 0.00 0.00 2.69
1933 2381 0.374758 CATGCCACGGACGATTTCAG 59.625 55.000 0.00 0.00 0.00 3.02
1934 2382 1.369091 ATGCCACGGACGATTTCAGC 61.369 55.000 0.00 0.00 0.00 4.26
1935 2383 3.081133 CCACGGACGATTTCAGCG 58.919 61.111 0.00 0.00 0.00 5.18
1936 2384 1.445410 CCACGGACGATTTCAGCGA 60.445 57.895 0.00 0.00 0.00 4.93
2042 2519 3.949113 TCCTTTCCCCGGAAATAATTTCG 59.051 43.478 0.73 0.00 42.34 3.46
2044 2521 1.301423 TCCCCGGAAATAATTTCGCG 58.699 50.000 0.73 0.00 40.57 5.87
2047 2524 2.540157 CCCCGGAAATAATTTCGCGTTC 60.540 50.000 0.73 0.00 40.57 3.95
2048 2525 2.540157 CCCGGAAATAATTTCGCGTTCC 60.540 50.000 0.73 9.23 40.57 3.62
2051 2534 3.604392 GGAAATAATTTCGCGTTCCTCG 58.396 45.455 5.77 0.00 40.57 4.63
2068 2551 0.108041 TCGTTCCTGCGGGGTAAATC 60.108 55.000 12.87 0.00 36.25 2.17
2082 2565 4.141733 GGGGTAAATCAATGATTGGTTGGG 60.142 45.833 9.47 0.00 33.47 4.12
2089 2576 2.632028 CAATGATTGGTTGGGTGGACAA 59.368 45.455 0.00 0.00 0.00 3.18
2114 2601 2.561467 TAGATCCAGGACGGCCGACA 62.561 60.000 35.90 10.41 39.96 4.35
2173 2672 1.264749 ATTGCCACGGCCTGAGACTA 61.265 55.000 5.42 0.00 41.09 2.59
2190 2689 4.341099 AGACTAGACGCGTTATTCTTTCG 58.659 43.478 15.53 0.79 0.00 3.46
2200 2699 3.646303 GTTATTCTTTCGTCTTGCGTCG 58.354 45.455 0.00 0.00 42.13 5.12
2202 2701 0.031043 TTCTTTCGTCTTGCGTCGGA 59.969 50.000 0.00 0.00 42.13 4.55
2206 2705 1.011968 TTCGTCTTGCGTCGGAATGG 61.012 55.000 0.00 0.00 42.13 3.16
2208 2707 1.079405 GTCTTGCGTCGGAATGGGA 60.079 57.895 0.00 0.00 0.00 4.37
2209 2708 1.084370 GTCTTGCGTCGGAATGGGAG 61.084 60.000 0.00 0.00 0.00 4.30
2228 2727 0.462759 GGCGTCTCCTCCTGATTTGG 60.463 60.000 0.00 0.00 0.00 3.28
2234 2733 4.320494 CGTCTCCTCCTGATTTGGTTTTTG 60.320 45.833 0.00 0.00 0.00 2.44
2235 2734 4.021981 GTCTCCTCCTGATTTGGTTTTTGG 60.022 45.833 0.00 0.00 0.00 3.28
2237 2736 3.895041 TCCTCCTGATTTGGTTTTTGGTC 59.105 43.478 0.00 0.00 0.00 4.02
2238 2737 3.006859 CCTCCTGATTTGGTTTTTGGTCC 59.993 47.826 0.00 0.00 0.00 4.46
2240 2739 4.230455 TCCTGATTTGGTTTTTGGTCCAT 58.770 39.130 0.00 0.00 33.50 3.41
2241 2740 5.398236 TCCTGATTTGGTTTTTGGTCCATA 58.602 37.500 0.00 0.00 33.50 2.74
2242 2741 6.022315 TCCTGATTTGGTTTTTGGTCCATAT 58.978 36.000 0.00 0.00 33.50 1.78
2243 2742 6.070881 TCCTGATTTGGTTTTTGGTCCATATG 60.071 38.462 0.00 0.00 33.50 1.78
2244 2743 5.486526 TGATTTGGTTTTTGGTCCATATGC 58.513 37.500 0.00 0.00 33.50 3.14
2245 2744 4.963318 TTTGGTTTTTGGTCCATATGCA 57.037 36.364 0.00 0.00 33.50 3.96
2246 2745 5.495926 TTTGGTTTTTGGTCCATATGCAT 57.504 34.783 3.79 3.79 33.50 3.96
2247 2746 4.468765 TGGTTTTTGGTCCATATGCATG 57.531 40.909 10.16 0.00 0.00 4.06
2248 2747 4.092279 TGGTTTTTGGTCCATATGCATGA 58.908 39.130 10.16 0.00 33.67 3.07
2249 2748 4.160065 TGGTTTTTGGTCCATATGCATGAG 59.840 41.667 10.16 0.92 33.67 2.90
2269 2768 1.078709 CCGTCGCATCATTGTTGACT 58.921 50.000 0.00 0.00 33.85 3.41
2277 2776 3.742369 GCATCATTGTTGACTTGGGTTTG 59.258 43.478 0.00 0.00 33.85 2.93
2278 2777 4.740334 GCATCATTGTTGACTTGGGTTTGT 60.740 41.667 0.00 0.00 33.85 2.83
2279 2778 4.383850 TCATTGTTGACTTGGGTTTGTG 57.616 40.909 0.00 0.00 0.00 3.33
2280 2779 2.663826 TTGTTGACTTGGGTTTGTGC 57.336 45.000 0.00 0.00 0.00 4.57
2281 2780 0.453793 TGTTGACTTGGGTTTGTGCG 59.546 50.000 0.00 0.00 0.00 5.34
2282 2781 0.454196 GTTGACTTGGGTTTGTGCGT 59.546 50.000 0.00 0.00 0.00 5.24
2283 2782 0.453793 TTGACTTGGGTTTGTGCGTG 59.546 50.000 0.00 0.00 0.00 5.34
2284 2783 1.358759 GACTTGGGTTTGTGCGTGG 59.641 57.895 0.00 0.00 0.00 4.94
2287 2786 0.174617 CTTGGGTTTGTGCGTGGTTT 59.825 50.000 0.00 0.00 0.00 3.27
2288 2787 0.608640 TTGGGTTTGTGCGTGGTTTT 59.391 45.000 0.00 0.00 0.00 2.43
2289 2788 0.173708 TGGGTTTGTGCGTGGTTTTC 59.826 50.000 0.00 0.00 0.00 2.29
2290 2789 0.528901 GGGTTTGTGCGTGGTTTTCC 60.529 55.000 0.00 0.00 41.14 3.13
2291 2790 0.458260 GGTTTGTGCGTGGTTTTCCT 59.542 50.000 0.00 0.00 41.38 3.36
2292 2791 1.555477 GTTTGTGCGTGGTTTTCCTG 58.445 50.000 0.00 0.00 41.38 3.86
2293 2792 1.135228 GTTTGTGCGTGGTTTTCCTGT 60.135 47.619 0.00 0.00 41.38 4.00
2294 2793 0.453793 TTGTGCGTGGTTTTCCTGTG 59.546 50.000 0.00 0.00 41.38 3.66
2295 2794 0.678366 TGTGCGTGGTTTTCCTGTGT 60.678 50.000 0.00 0.00 41.38 3.72
2313 2812 2.341176 GTTGCAGTCGGGTACGGT 59.659 61.111 0.00 0.00 41.39 4.83
2565 3068 2.184322 CACAGCCACTCGCCGTAT 59.816 61.111 0.00 0.00 38.78 3.06
2638 3156 0.245539 GCACATGGACAATGCTGCTT 59.754 50.000 0.00 0.00 40.22 3.91
2694 3212 6.723052 ACAAAGATTTCAGGTGATCTCCATTT 59.277 34.615 15.93 3.06 31.63 2.32
2702 3220 6.202331 TCAGGTGATCTCCATTTACCTTCTA 58.798 40.000 15.93 0.00 39.63 2.10
2722 3240 3.499050 CATGCTCTGCTGTCCTGC 58.501 61.111 0.00 0.00 0.00 4.85
2723 3241 1.078356 CATGCTCTGCTGTCCTGCT 60.078 57.895 0.00 0.00 0.00 4.24
2724 3242 1.078356 ATGCTCTGCTGTCCTGCTG 60.078 57.895 0.00 0.00 0.00 4.41
2725 3243 1.551019 ATGCTCTGCTGTCCTGCTGA 61.551 55.000 5.81 5.81 38.31 4.26
2726 3244 1.221293 GCTCTGCTGTCCTGCTGAT 59.779 57.895 6.28 0.00 39.50 2.90
2727 3245 0.810823 GCTCTGCTGTCCTGCTGATC 60.811 60.000 6.28 0.00 39.50 2.92
2728 3246 0.535797 CTCTGCTGTCCTGCTGATCA 59.464 55.000 0.00 0.00 39.50 2.92
2729 3247 0.248565 TCTGCTGTCCTGCTGATCAC 59.751 55.000 0.00 0.00 36.30 3.06
2730 3248 0.249676 CTGCTGTCCTGCTGATCACT 59.750 55.000 0.00 0.00 34.47 3.41
2731 3249 0.689055 TGCTGTCCTGCTGATCACTT 59.311 50.000 0.00 0.00 0.00 3.16
2732 3250 1.085091 GCTGTCCTGCTGATCACTTG 58.915 55.000 0.00 0.00 0.00 3.16
2733 3251 1.085091 CTGTCCTGCTGATCACTTGC 58.915 55.000 0.00 0.00 0.00 4.01
2734 3252 0.689055 TGTCCTGCTGATCACTTGCT 59.311 50.000 6.93 0.00 0.00 3.91
2735 3253 1.085091 GTCCTGCTGATCACTTGCTG 58.915 55.000 6.93 6.24 0.00 4.41
2736 3254 0.689055 TCCTGCTGATCACTTGCTGT 59.311 50.000 6.93 0.00 0.00 4.40
2737 3255 1.072806 TCCTGCTGATCACTTGCTGTT 59.927 47.619 6.93 0.00 0.00 3.16
2738 3256 1.884579 CCTGCTGATCACTTGCTGTTT 59.115 47.619 6.93 0.00 0.00 2.83
2739 3257 2.295349 CCTGCTGATCACTTGCTGTTTT 59.705 45.455 6.93 0.00 0.00 2.43
2740 3258 3.243636 CCTGCTGATCACTTGCTGTTTTT 60.244 43.478 6.93 0.00 0.00 1.94
2741 3259 4.022935 CCTGCTGATCACTTGCTGTTTTTA 60.023 41.667 6.93 0.00 0.00 1.52
2742 3260 5.336213 CCTGCTGATCACTTGCTGTTTTTAT 60.336 40.000 6.93 0.00 0.00 1.40
2743 3261 5.702865 TGCTGATCACTTGCTGTTTTTATC 58.297 37.500 6.93 0.00 0.00 1.75
2744 3262 5.474532 TGCTGATCACTTGCTGTTTTTATCT 59.525 36.000 6.93 0.00 0.00 1.98
2745 3263 6.016024 TGCTGATCACTTGCTGTTTTTATCTT 60.016 34.615 6.93 0.00 0.00 2.40
2746 3264 6.525976 GCTGATCACTTGCTGTTTTTATCTTC 59.474 38.462 0.00 0.00 0.00 2.87
2747 3265 7.574592 GCTGATCACTTGCTGTTTTTATCTTCT 60.575 37.037 0.00 0.00 0.00 2.85
2748 3266 7.810658 TGATCACTTGCTGTTTTTATCTTCTC 58.189 34.615 0.00 0.00 0.00 2.87
2749 3267 7.663081 TGATCACTTGCTGTTTTTATCTTCTCT 59.337 33.333 0.00 0.00 0.00 3.10
2750 3268 7.194607 TCACTTGCTGTTTTTATCTTCTCTG 57.805 36.000 0.00 0.00 0.00 3.35
2751 3269 5.855395 CACTTGCTGTTTTTATCTTCTCTGC 59.145 40.000 0.00 0.00 0.00 4.26
2752 3270 5.532406 ACTTGCTGTTTTTATCTTCTCTGCA 59.468 36.000 0.00 0.00 0.00 4.41
2753 3271 6.208204 ACTTGCTGTTTTTATCTTCTCTGCAT 59.792 34.615 0.00 0.00 32.08 3.96
2754 3272 5.946298 TGCTGTTTTTATCTTCTCTGCATG 58.054 37.500 0.00 0.00 0.00 4.06
2755 3273 4.797349 GCTGTTTTTATCTTCTCTGCATGC 59.203 41.667 11.82 11.82 0.00 4.06
2756 3274 5.392811 GCTGTTTTTATCTTCTCTGCATGCT 60.393 40.000 20.33 0.00 0.00 3.79
2757 3275 6.187125 TGTTTTTATCTTCTCTGCATGCTC 57.813 37.500 20.33 0.00 0.00 4.26
2758 3276 5.942236 TGTTTTTATCTTCTCTGCATGCTCT 59.058 36.000 20.33 0.00 0.00 4.09
2759 3277 6.128090 TGTTTTTATCTTCTCTGCATGCTCTG 60.128 38.462 20.33 9.28 0.00 3.35
2808 3382 4.308458 TCGTTGGTGTCAGGGCCG 62.308 66.667 0.00 0.00 0.00 6.13
2851 3425 3.291809 TTGTGCTTGATTGCATCAGTG 57.708 42.857 0.00 0.00 45.23 3.66
2872 3446 0.181114 ACAAGCAGAGCCTGTGTTGA 59.819 50.000 17.78 0.00 31.54 3.18
2911 3485 3.057736 TGCTCTTCTGACACCGTTAGTAC 60.058 47.826 0.00 0.00 0.00 2.73
2914 3488 5.673318 GCTCTTCTGACACCGTTAGTACTAC 60.673 48.000 0.91 0.00 0.00 2.73
2915 3489 5.555017 TCTTCTGACACCGTTAGTACTACT 58.445 41.667 0.91 0.00 0.00 2.57
2929 3505 5.730296 AGTACTACTGTGATCTGTGCTTT 57.270 39.130 0.00 0.00 0.00 3.51
2952 3528 6.985188 TCTTAGGTAATTGCTTTGCAGTAG 57.015 37.500 0.00 0.00 40.61 2.57
2953 3529 6.472887 TCTTAGGTAATTGCTTTGCAGTAGT 58.527 36.000 0.00 0.00 40.61 2.73
2954 3530 7.617225 TCTTAGGTAATTGCTTTGCAGTAGTA 58.383 34.615 0.00 0.00 40.61 1.82
2955 3531 8.265055 TCTTAGGTAATTGCTTTGCAGTAGTAT 58.735 33.333 0.00 0.00 40.61 2.12
2956 3532 9.542462 CTTAGGTAATTGCTTTGCAGTAGTATA 57.458 33.333 0.00 0.00 40.61 1.47
2969 3545 4.753233 CAGTAGTATATCTGGCCATGCTC 58.247 47.826 5.51 0.00 0.00 4.26
3063 3639 3.005897 AGAGCAGAGCGTTCTTCTAAACA 59.994 43.478 0.80 0.00 29.52 2.83
3118 3694 6.509418 TGAAACTGTATCTGGGTTTTATGC 57.491 37.500 0.00 0.00 34.00 3.14
3167 3743 2.023984 TCCTGCTCCATCTTAGACCTGA 60.024 50.000 0.00 0.00 0.00 3.86
3176 3752 7.500559 GCTCCATCTTAGACCTGACATTTATTT 59.499 37.037 0.00 0.00 0.00 1.40
3227 3803 6.127786 CCATGTTTGTTTTTCATGTTTGGGTT 60.128 34.615 0.00 0.00 37.73 4.11
3255 3994 7.405769 GCTAGAAAATAATGTCAGTTCTGCTC 58.594 38.462 0.00 0.00 31.28 4.26
3321 4060 5.766670 CCATCTGAAAAGGCTAGCATGATTA 59.233 40.000 18.24 0.00 0.00 1.75
3322 4061 6.433404 CCATCTGAAAAGGCTAGCATGATTAT 59.567 38.462 18.24 0.00 0.00 1.28
3323 4062 7.039923 CCATCTGAAAAGGCTAGCATGATTATT 60.040 37.037 18.24 0.00 0.00 1.40
3361 4104 1.831835 TTGCCCATCCATCCATCCTA 58.168 50.000 0.00 0.00 0.00 2.94
3415 4159 4.460263 ACTTTGTGATGAGTTACCAGCAA 58.540 39.130 0.00 0.00 33.98 3.91
3433 4177 2.711542 CAATGTCCCTTTACCGAAGCT 58.288 47.619 0.00 0.00 33.84 3.74
3435 4179 0.611714 TGTCCCTTTACCGAAGCTCC 59.388 55.000 0.00 0.00 33.84 4.70
3439 4183 0.531200 CCTTTACCGAAGCTCCGTCT 59.469 55.000 0.00 0.00 33.84 4.18
3527 4275 2.751806 GCTTGCTTAGATGTCTGGCTTT 59.248 45.455 9.80 0.00 0.00 3.51
3530 4278 4.292186 TGCTTAGATGTCTGGCTTTCTT 57.708 40.909 9.80 0.00 0.00 2.52
3536 4284 5.702349 AGATGTCTGGCTTTCTTCTTTTG 57.298 39.130 0.00 0.00 0.00 2.44
3537 4285 5.136105 AGATGTCTGGCTTTCTTCTTTTGT 58.864 37.500 0.00 0.00 0.00 2.83
3538 4286 6.299141 AGATGTCTGGCTTTCTTCTTTTGTA 58.701 36.000 0.00 0.00 0.00 2.41
3546 4294 8.232913 TGGCTTTCTTCTTTTGTAGTATTGTT 57.767 30.769 0.00 0.00 0.00 2.83
3663 4450 3.573110 ACGTGAAGCCTACTGTATATCCC 59.427 47.826 0.00 0.00 0.00 3.85
3664 4451 3.827302 CGTGAAGCCTACTGTATATCCCT 59.173 47.826 0.00 0.00 0.00 4.20
3671 4458 5.896678 AGCCTACTGTATATCCCTGATCATC 59.103 44.000 0.00 0.00 0.00 2.92
3692 4479 4.973168 TCACTGTCCAATAAGTTTCAGCT 58.027 39.130 0.00 0.00 0.00 4.24
3693 4480 6.109156 TCACTGTCCAATAAGTTTCAGCTA 57.891 37.500 0.00 0.00 0.00 3.32
3694 4481 6.166279 TCACTGTCCAATAAGTTTCAGCTAG 58.834 40.000 0.00 0.00 0.00 3.42
3760 4567 7.229907 TGCATGAATGATTAAGTGCTATGTGAT 59.770 33.333 0.00 0.00 33.95 3.06
3761 4568 8.080417 GCATGAATGATTAAGTGCTATGTGATT 58.920 33.333 0.00 0.00 0.00 2.57
3762 4569 9.394477 CATGAATGATTAAGTGCTATGTGATTG 57.606 33.333 0.00 0.00 0.00 2.67
3763 4570 8.510243 TGAATGATTAAGTGCTATGTGATTGT 57.490 30.769 0.00 0.00 0.00 2.71
3764 4571 8.400186 TGAATGATTAAGTGCTATGTGATTGTG 58.600 33.333 0.00 0.00 0.00 3.33
3765 4572 8.510243 AATGATTAAGTGCTATGTGATTGTGA 57.490 30.769 0.00 0.00 0.00 3.58
3766 4573 7.543947 TGATTAAGTGCTATGTGATTGTGAG 57.456 36.000 0.00 0.00 0.00 3.51
3769 5071 4.743057 AGTGCTATGTGATTGTGAGCTA 57.257 40.909 0.00 0.00 34.19 3.32
3780 5082 3.691049 TTGTGAGCTAACTTGTGCAAC 57.309 42.857 2.06 0.00 37.35 4.17
3840 5142 1.701847 AGGAGCACAACCAGTTCATCT 59.298 47.619 0.00 0.00 0.00 2.90
3841 5143 2.079925 GGAGCACAACCAGTTCATCTC 58.920 52.381 0.00 0.00 0.00 2.75
3854 5156 1.597302 CATCTCTGCGGCCATGGAG 60.597 63.158 18.40 9.81 0.00 3.86
3866 5168 3.234349 ATGGAGACCGCCATGGAG 58.766 61.111 18.40 13.36 46.62 3.86
3878 5180 2.216898 GCCATGGAGAACTACTCATGC 58.783 52.381 18.40 0.00 46.54 4.06
3902 5204 3.329542 GATGCCGGCCCAGAACTCA 62.330 63.158 26.77 0.73 0.00 3.41
3915 5217 3.428725 CCAGAACTCATCCTTCTCACTCG 60.429 52.174 0.00 0.00 0.00 4.18
3995 5297 1.684049 CAAGACGGAGAGGGAGCCT 60.684 63.158 0.00 0.00 36.03 4.58
4003 5305 4.470764 GAGGGAGCCTCTGTCCTT 57.529 61.111 0.00 0.00 46.41 3.36
4004 5306 2.207580 GAGGGAGCCTCTGTCCTTC 58.792 63.158 0.00 0.00 46.41 3.46
4005 5307 0.325203 GAGGGAGCCTCTGTCCTTCT 60.325 60.000 0.00 0.00 46.41 2.85
4127 5448 4.767255 CCGGAGCTGCAGGACCAC 62.767 72.222 17.12 0.00 33.08 4.16
4130 5451 2.581354 GAGCTGCAGGACCACGAT 59.419 61.111 17.12 0.00 0.00 3.73
4141 5462 0.238289 GACCACGATGCCAACAACAG 59.762 55.000 0.00 0.00 0.00 3.16
4260 5584 2.095978 CTCCCGGTGAAGGTGAACGT 62.096 60.000 0.00 0.00 0.00 3.99
4293 5617 2.652590 GGCCTGATCTCTGCTGATTTT 58.347 47.619 0.00 0.00 0.00 1.82
4294 5618 3.022406 GGCCTGATCTCTGCTGATTTTT 58.978 45.455 0.00 0.00 0.00 1.94
4311 5635 0.320771 TTTGCCGAAGCTCTCTGGTC 60.321 55.000 0.00 0.00 40.80 4.02
4312 5636 1.188219 TTGCCGAAGCTCTCTGGTCT 61.188 55.000 0.00 0.00 40.80 3.85
4313 5637 1.153667 GCCGAAGCTCTCTGGTCTG 60.154 63.158 0.00 0.00 35.50 3.51
4314 5638 1.515020 CCGAAGCTCTCTGGTCTGG 59.485 63.158 0.00 0.00 0.00 3.86
4315 5639 1.153667 CGAAGCTCTCTGGTCTGGC 60.154 63.158 0.00 0.00 0.00 4.85
4565 5920 4.039366 AGTTTTCTATAGCCTCGATGGTCC 59.961 45.833 0.00 0.00 38.35 4.46
4658 7154 5.554636 CGATGCTCTTTTACTTGATGTGTC 58.445 41.667 0.00 0.00 0.00 3.67
4695 7202 1.427592 GATGGAGTTGAGAGCAGCGC 61.428 60.000 0.00 0.00 0.00 5.92
4723 7230 1.127343 TTTTTGCTTTGAGGTGGGGG 58.873 50.000 0.00 0.00 0.00 5.40
4724 7231 0.031616 TTTTGCTTTGAGGTGGGGGT 60.032 50.000 0.00 0.00 0.00 4.95
4726 7233 2.283173 GCTTTGAGGTGGGGGTGG 60.283 66.667 0.00 0.00 0.00 4.61
4727 7234 2.283173 CTTTGAGGTGGGGGTGGC 60.283 66.667 0.00 0.00 0.00 5.01
4737 7244 4.759205 GGGGTGGCGGCAATCCTT 62.759 66.667 24.72 0.00 0.00 3.36
4761 7272 3.537206 ATCCGGGCATAGCTTCCGC 62.537 63.158 0.00 3.17 42.18 5.54
4779 7293 2.490217 CGCAATCCTCCGACGAGT 59.510 61.111 0.00 0.00 33.93 4.18
4797 7311 3.806521 CGAGTAGCATCCTCCTTTTGATG 59.193 47.826 0.00 0.00 41.02 3.07
4872 7387 2.387125 TTCGACTTGCTTTGGCGTGC 62.387 55.000 0.00 0.00 42.25 5.34
4914 7429 3.003763 GTTCGCCTCCCCTGGTCT 61.004 66.667 0.00 0.00 0.00 3.85
4915 7430 3.003173 TTCGCCTCCCCTGGTCTG 61.003 66.667 0.00 0.00 0.00 3.51
5029 7552 1.302832 GGTGGAGGAACAGGCTGTG 60.303 63.158 22.83 0.00 0.00 3.66
5103 7830 4.082787 CGGTACCGTTTTAAGTCTGTCCTA 60.083 45.833 26.39 0.00 34.35 2.94
5219 7977 3.960102 TCTTTTCTTTGGTTCTGGTGCAT 59.040 39.130 0.00 0.00 0.00 3.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 85 0.182299 TCCATGCGCACCCAATCATA 59.818 50.000 14.90 0.00 0.00 2.15
299 332 0.387367 GAAGAAGTCGCTGAGCACGA 60.387 55.000 4.88 0.00 37.17 4.35
301 334 2.066000 CGAAGAAGTCGCTGAGCAC 58.934 57.895 4.88 1.89 44.14 4.40
302 335 4.559835 CGAAGAAGTCGCTGAGCA 57.440 55.556 4.88 0.00 44.14 4.26
324 357 6.394025 AAAAGGACCGCAATTACAACTTAA 57.606 33.333 0.00 0.00 0.00 1.85
325 358 6.394025 AAAAAGGACCGCAATTACAACTTA 57.606 33.333 0.00 0.00 0.00 2.24
326 359 4.929819 AAAAGGACCGCAATTACAACTT 57.070 36.364 0.00 0.00 0.00 2.66
327 360 4.929819 AAAAAGGACCGCAATTACAACT 57.070 36.364 0.00 0.00 0.00 3.16
352 385 9.769093 GTTCGACATTTTACATAGCAAAGTTAT 57.231 29.630 0.00 0.00 0.00 1.89
353 386 8.775527 TGTTCGACATTTTACATAGCAAAGTTA 58.224 29.630 0.00 0.00 0.00 2.24
354 387 7.644490 TGTTCGACATTTTACATAGCAAAGTT 58.356 30.769 0.00 0.00 0.00 2.66
355 388 7.197071 TGTTCGACATTTTACATAGCAAAGT 57.803 32.000 0.00 0.00 0.00 2.66
356 389 7.750458 ACATGTTCGACATTTTACATAGCAAAG 59.250 33.333 0.00 0.00 36.53 2.77
357 390 7.589395 ACATGTTCGACATTTTACATAGCAAA 58.411 30.769 0.00 0.00 36.53 3.68
358 391 7.139896 ACATGTTCGACATTTTACATAGCAA 57.860 32.000 0.00 0.00 36.53 3.91
359 392 6.735678 ACATGTTCGACATTTTACATAGCA 57.264 33.333 0.00 0.00 36.53 3.49
375 408 3.370978 CCGGGCATATATTCGACATGTTC 59.629 47.826 0.00 0.00 0.00 3.18
376 409 3.244422 ACCGGGCATATATTCGACATGTT 60.244 43.478 6.32 0.00 0.00 2.71
377 410 2.301870 ACCGGGCATATATTCGACATGT 59.698 45.455 6.32 0.00 0.00 3.21
378 411 2.972625 ACCGGGCATATATTCGACATG 58.027 47.619 6.32 0.00 0.00 3.21
379 412 3.695830 AACCGGGCATATATTCGACAT 57.304 42.857 6.32 0.00 0.00 3.06
380 413 3.135225 CAAACCGGGCATATATTCGACA 58.865 45.455 6.32 0.00 0.00 4.35
381 414 2.095919 GCAAACCGGGCATATATTCGAC 60.096 50.000 6.32 0.00 0.00 4.20
382 415 2.147958 GCAAACCGGGCATATATTCGA 58.852 47.619 6.32 0.00 0.00 3.71
383 416 1.199097 GGCAAACCGGGCATATATTCG 59.801 52.381 6.32 0.00 0.00 3.34
384 417 2.235016 TGGCAAACCGGGCATATATTC 58.765 47.619 6.32 0.00 38.55 1.75
385 418 2.373335 TGGCAAACCGGGCATATATT 57.627 45.000 6.32 0.00 38.55 1.28
386 419 2.364002 GTTTGGCAAACCGGGCATATAT 59.636 45.455 28.40 0.00 43.37 0.86
387 420 1.751924 GTTTGGCAAACCGGGCATATA 59.248 47.619 28.40 0.00 43.37 0.86
388 421 0.534873 GTTTGGCAAACCGGGCATAT 59.465 50.000 28.40 0.00 43.37 1.78
389 422 0.540830 AGTTTGGCAAACCGGGCATA 60.541 50.000 33.07 0.00 43.37 3.14
390 423 1.406860 AAGTTTGGCAAACCGGGCAT 61.407 50.000 33.07 15.54 43.37 4.40
391 424 1.617947 AAAGTTTGGCAAACCGGGCA 61.618 50.000 33.07 0.06 42.34 5.36
392 425 0.389757 TAAAGTTTGGCAAACCGGGC 59.610 50.000 33.07 13.53 42.34 6.13
393 426 1.604438 GCTAAAGTTTGGCAAACCGGG 60.604 52.381 33.07 22.61 42.34 5.73
394 427 1.604438 GGCTAAAGTTTGGCAAACCGG 60.604 52.381 33.07 22.32 42.34 5.28
395 428 1.067821 TGGCTAAAGTTTGGCAAACCG 59.932 47.619 33.07 21.67 42.34 4.44
396 429 2.900716 TGGCTAAAGTTTGGCAAACC 57.099 45.000 33.07 20.49 42.34 3.27
399 432 7.500559 ACAAATTATTTGGCTAAAGTTTGGCAA 59.499 29.630 23.28 19.74 44.81 4.52
400 433 6.995091 ACAAATTATTTGGCTAAAGTTTGGCA 59.005 30.769 23.28 15.74 44.81 4.92
401 434 7.433708 ACAAATTATTTGGCTAAAGTTTGGC 57.566 32.000 20.00 15.06 44.81 4.52
425 458 9.928236 GCATTTAGCAAAGTTTGTCAAATTAAA 57.072 25.926 16.70 11.56 44.79 1.52
448 481 8.769891 CCGTTTATGTTTTTAAAAGAAAGGCAT 58.230 29.630 0.14 3.93 0.00 4.40
449 482 7.254488 GCCGTTTATGTTTTTAAAAGAAAGGCA 60.254 33.333 20.71 10.01 0.00 4.75
450 483 7.067116 GCCGTTTATGTTTTTAAAAGAAAGGC 58.933 34.615 15.98 15.98 0.00 4.35
451 484 7.043258 ACGCCGTTTATGTTTTTAAAAGAAAGG 60.043 33.333 0.14 6.58 0.00 3.11
452 485 7.833539 ACGCCGTTTATGTTTTTAAAAGAAAG 58.166 30.769 0.14 0.00 0.00 2.62
453 486 7.752557 ACGCCGTTTATGTTTTTAAAAGAAA 57.247 28.000 0.14 0.00 0.00 2.52
454 487 8.903723 CATACGCCGTTTATGTTTTTAAAAGAA 58.096 29.630 0.00 0.00 0.00 2.52
455 488 8.074972 ACATACGCCGTTTATGTTTTTAAAAGA 58.925 29.630 0.00 0.00 36.91 2.52
456 489 8.150909 CACATACGCCGTTTATGTTTTTAAAAG 58.849 33.333 3.01 0.00 37.95 2.27
457 490 7.114529 CCACATACGCCGTTTATGTTTTTAAAA 59.885 33.333 3.01 0.00 37.95 1.52
458 491 6.581542 CCACATACGCCGTTTATGTTTTTAAA 59.418 34.615 3.01 0.00 37.95 1.52
459 492 6.084925 CCACATACGCCGTTTATGTTTTTAA 58.915 36.000 3.01 0.00 37.95 1.52
460 493 5.391736 CCCACATACGCCGTTTATGTTTTTA 60.392 40.000 3.01 0.00 37.95 1.52
461 494 4.477780 CCACATACGCCGTTTATGTTTTT 58.522 39.130 3.01 0.00 37.95 1.94
462 495 3.119779 CCCACATACGCCGTTTATGTTTT 60.120 43.478 3.01 0.00 37.95 2.43
463 496 2.420722 CCCACATACGCCGTTTATGTTT 59.579 45.455 3.01 0.00 37.95 2.83
464 497 2.011222 CCCACATACGCCGTTTATGTT 58.989 47.619 3.01 0.00 37.95 2.71
465 498 1.658994 CCCACATACGCCGTTTATGT 58.341 50.000 0.00 0.00 40.16 2.29
466 499 0.941542 CCCCACATACGCCGTTTATG 59.058 55.000 0.00 0.00 33.77 1.90
467 500 0.816421 GCCCCACATACGCCGTTTAT 60.816 55.000 0.00 0.00 0.00 1.40
468 501 1.449956 GCCCCACATACGCCGTTTA 60.450 57.895 0.00 0.00 0.00 2.01
469 502 2.748647 GCCCCACATACGCCGTTT 60.749 61.111 0.00 0.00 0.00 3.60
491 524 3.842925 TTTCCAGCCGCTGACCCAC 62.843 63.158 22.35 0.00 32.44 4.61
492 525 3.565214 TTTCCAGCCGCTGACCCA 61.565 61.111 22.35 0.00 32.44 4.51
493 526 3.056328 GTTTCCAGCCGCTGACCC 61.056 66.667 22.35 2.99 32.44 4.46
494 527 3.056328 GGTTTCCAGCCGCTGACC 61.056 66.667 22.35 16.88 32.44 4.02
495 528 3.056328 GGGTTTCCAGCCGCTGAC 61.056 66.667 22.35 11.72 32.44 3.51
496 529 3.565214 TGGGTTTCCAGCCGCTGA 61.565 61.111 22.35 5.23 44.44 4.26
497 530 3.365265 GTGGGTTTCCAGCCGCTG 61.365 66.667 13.82 13.82 46.07 5.18
500 533 2.742372 CGAGTGGGTTTCCAGCCG 60.742 66.667 0.00 0.00 45.05 5.52
501 534 3.056328 GCGAGTGGGTTTCCAGCC 61.056 66.667 0.00 0.00 45.05 4.85
502 535 3.056328 GGCGAGTGGGTTTCCAGC 61.056 66.667 0.00 0.00 45.05 4.85
503 536 2.359975 GGGCGAGTGGGTTTCCAG 60.360 66.667 0.00 0.00 45.05 3.86
504 537 3.961414 GGGGCGAGTGGGTTTCCA 61.961 66.667 0.00 0.00 41.58 3.53
505 538 4.735358 GGGGGCGAGTGGGTTTCC 62.735 72.222 0.00 0.00 0.00 3.13
506 539 3.961414 TGGGGGCGAGTGGGTTTC 61.961 66.667 0.00 0.00 0.00 2.78
507 540 4.280019 GTGGGGGCGAGTGGGTTT 62.280 66.667 0.00 0.00 0.00 3.27
517 550 2.000215 CTAAAAATCGGCGTGGGGGC 62.000 60.000 6.85 0.00 37.98 5.80
518 551 2.000215 GCTAAAAATCGGCGTGGGGG 62.000 60.000 6.85 0.00 0.00 5.40
519 552 1.431845 GCTAAAAATCGGCGTGGGG 59.568 57.895 6.85 0.00 0.00 4.96
520 553 1.061887 CGCTAAAAATCGGCGTGGG 59.938 57.895 6.85 0.00 43.28 4.61
521 554 4.662859 CGCTAAAAATCGGCGTGG 57.337 55.556 6.85 0.00 43.28 4.94
525 558 2.024163 CCGGCGCTAAAAATCGGC 59.976 61.111 7.64 0.00 45.92 5.54
526 559 2.024163 GCCGGCGCTAAAAATCGG 59.976 61.111 12.58 11.30 43.13 4.18
527 560 3.098555 AGCCGGCGCTAAAAATCG 58.901 55.556 23.20 0.00 46.08 3.34
546 579 1.450669 TAAAATCGCCGCCTGGGAC 60.451 57.895 0.00 0.00 38.94 4.46
547 580 1.450669 GTAAAATCGCCGCCTGGGA 60.451 57.895 0.00 0.00 40.60 4.37
548 581 2.819552 CGTAAAATCGCCGCCTGGG 61.820 63.158 0.00 0.00 39.58 4.45
549 582 1.762222 CTCGTAAAATCGCCGCCTGG 61.762 60.000 0.00 0.00 38.77 4.45
550 583 1.082117 ACTCGTAAAATCGCCGCCTG 61.082 55.000 0.00 0.00 0.00 4.85
551 584 0.804933 GACTCGTAAAATCGCCGCCT 60.805 55.000 0.00 0.00 0.00 5.52
552 585 1.634753 GACTCGTAAAATCGCCGCC 59.365 57.895 0.00 0.00 0.00 6.13
553 586 1.634753 GGACTCGTAAAATCGCCGC 59.365 57.895 0.00 0.00 0.00 6.53
554 587 1.149964 GGGGACTCGTAAAATCGCCG 61.150 60.000 0.00 0.00 35.95 6.46
555 588 0.177373 AGGGGACTCGTAAAATCGCC 59.823 55.000 0.00 0.00 43.87 5.54
556 589 2.019948 AAGGGGACTCGTAAAATCGC 57.980 50.000 0.00 0.00 42.68 4.58
557 590 3.714391 CCTAAGGGGACTCGTAAAATCG 58.286 50.000 0.00 0.00 42.68 3.34
581 614 3.805267 GAGCATCTCCAGCCGTTG 58.195 61.111 0.00 0.00 0.00 4.10
595 628 0.036952 TGCAGTCAGGCTGTAAGAGC 60.037 55.000 15.27 12.74 46.64 4.09
596 629 1.001293 TGTGCAGTCAGGCTGTAAGAG 59.999 52.381 15.27 2.86 46.64 2.85
597 630 1.047801 TGTGCAGTCAGGCTGTAAGA 58.952 50.000 15.27 0.00 46.64 2.10
598 631 2.105006 ATGTGCAGTCAGGCTGTAAG 57.895 50.000 15.27 6.44 46.64 2.34
599 632 3.599343 CTTATGTGCAGTCAGGCTGTAA 58.401 45.455 15.27 2.25 46.64 2.41
600 633 2.093500 CCTTATGTGCAGTCAGGCTGTA 60.093 50.000 15.27 0.00 46.64 2.74
601 634 1.339438 CCTTATGTGCAGTCAGGCTGT 60.339 52.381 15.27 0.00 46.64 4.40
603 636 1.279496 TCCTTATGTGCAGTCAGGCT 58.721 50.000 0.00 0.00 34.04 4.58
604 637 2.012673 CTTCCTTATGTGCAGTCAGGC 58.987 52.381 0.00 0.00 0.00 4.85
605 638 2.012673 GCTTCCTTATGTGCAGTCAGG 58.987 52.381 0.00 0.00 0.00 3.86
606 639 2.012673 GGCTTCCTTATGTGCAGTCAG 58.987 52.381 0.00 0.00 0.00 3.51
607 640 1.350684 TGGCTTCCTTATGTGCAGTCA 59.649 47.619 0.00 0.00 0.00 3.41
608 641 1.740025 GTGGCTTCCTTATGTGCAGTC 59.260 52.381 0.00 0.00 0.00 3.51
609 642 1.826385 GTGGCTTCCTTATGTGCAGT 58.174 50.000 0.00 0.00 0.00 4.40
610 643 0.729116 CGTGGCTTCCTTATGTGCAG 59.271 55.000 0.00 0.00 0.00 4.41
611 644 0.036164 ACGTGGCTTCCTTATGTGCA 59.964 50.000 0.00 0.00 0.00 4.57
612 645 1.664151 GTACGTGGCTTCCTTATGTGC 59.336 52.381 0.00 0.00 0.00 4.57
613 646 1.924524 CGTACGTGGCTTCCTTATGTG 59.075 52.381 7.22 0.00 0.00 3.21
614 647 1.738030 GCGTACGTGGCTTCCTTATGT 60.738 52.381 17.90 0.00 0.00 2.29
615 648 0.928229 GCGTACGTGGCTTCCTTATG 59.072 55.000 17.90 0.00 0.00 1.90
616 649 0.526954 CGCGTACGTGGCTTCCTTAT 60.527 55.000 20.84 0.00 33.53 1.73
617 650 1.153978 CGCGTACGTGGCTTCCTTA 60.154 57.895 20.84 0.00 33.53 2.69
618 651 2.431942 CGCGTACGTGGCTTCCTT 60.432 61.111 20.84 0.00 33.53 3.36
619 652 4.430765 CCGCGTACGTGGCTTCCT 62.431 66.667 32.68 0.00 39.06 3.36
621 654 4.424566 TCCCGCGTACGTGGCTTC 62.425 66.667 36.56 10.12 43.94 3.86
622 655 4.430765 CTCCCGCGTACGTGGCTT 62.431 66.667 36.56 0.00 43.94 4.35
629 662 4.203076 ATCCGTGCTCCCGCGTAC 62.203 66.667 4.92 0.00 43.11 3.67
630 663 4.201679 CATCCGTGCTCCCGCGTA 62.202 66.667 4.92 0.00 43.11 4.42
633 666 4.467084 TTCCATCCGTGCTCCCGC 62.467 66.667 0.00 0.00 0.00 6.13
634 667 2.202932 CTTCCATCCGTGCTCCCG 60.203 66.667 0.00 0.00 0.00 5.14
635 668 2.514824 GCTTCCATCCGTGCTCCC 60.515 66.667 0.00 0.00 0.00 4.30
636 669 1.153086 ATGCTTCCATCCGTGCTCC 60.153 57.895 0.00 0.00 0.00 4.70
637 670 0.462581 TCATGCTTCCATCCGTGCTC 60.463 55.000 0.00 0.00 0.00 4.26
638 671 0.463295 CTCATGCTTCCATCCGTGCT 60.463 55.000 0.00 0.00 0.00 4.40
639 672 0.462581 TCTCATGCTTCCATCCGTGC 60.463 55.000 0.00 0.00 0.00 5.34
640 673 1.938577 CTTCTCATGCTTCCATCCGTG 59.061 52.381 0.00 0.00 0.00 4.94
641 674 1.134280 CCTTCTCATGCTTCCATCCGT 60.134 52.381 0.00 0.00 0.00 4.69
642 675 1.590932 CCTTCTCATGCTTCCATCCG 58.409 55.000 0.00 0.00 0.00 4.18
643 676 1.492176 TCCCTTCTCATGCTTCCATCC 59.508 52.381 0.00 0.00 0.00 3.51
644 677 2.848691 CTCCCTTCTCATGCTTCCATC 58.151 52.381 0.00 0.00 0.00 3.51
645 678 1.133853 GCTCCCTTCTCATGCTTCCAT 60.134 52.381 0.00 0.00 0.00 3.41
646 679 0.254178 GCTCCCTTCTCATGCTTCCA 59.746 55.000 0.00 0.00 0.00 3.53
647 680 0.254178 TGCTCCCTTCTCATGCTTCC 59.746 55.000 0.00 0.00 0.00 3.46
648 681 2.015587 CTTGCTCCCTTCTCATGCTTC 58.984 52.381 0.00 0.00 0.00 3.86
649 682 1.954258 GCTTGCTCCCTTCTCATGCTT 60.954 52.381 0.00 0.00 0.00 3.91
650 683 0.394080 GCTTGCTCCCTTCTCATGCT 60.394 55.000 0.00 0.00 0.00 3.79
651 684 0.679002 TGCTTGCTCCCTTCTCATGC 60.679 55.000 0.00 0.00 0.00 4.06
652 685 1.743958 CTTGCTTGCTCCCTTCTCATG 59.256 52.381 0.00 0.00 0.00 3.07
653 686 1.353694 ACTTGCTTGCTCCCTTCTCAT 59.646 47.619 0.00 0.00 0.00 2.90
654 687 0.767375 ACTTGCTTGCTCCCTTCTCA 59.233 50.000 0.00 0.00 0.00 3.27
655 688 1.003003 AGACTTGCTTGCTCCCTTCTC 59.997 52.381 0.00 0.00 0.00 2.87
656 689 1.063183 AGACTTGCTTGCTCCCTTCT 58.937 50.000 0.00 0.00 0.00 2.85
657 690 1.538950 CAAGACTTGCTTGCTCCCTTC 59.461 52.381 1.43 0.00 46.67 3.46
658 691 1.613836 CAAGACTTGCTTGCTCCCTT 58.386 50.000 1.43 0.00 46.67 3.95
659 692 3.336122 CAAGACTTGCTTGCTCCCT 57.664 52.632 1.43 0.00 46.67 4.20
666 699 2.486191 CCACTCTGGACAAGACTTGCTT 60.486 50.000 15.24 0.00 40.96 3.91
667 700 1.071385 CCACTCTGGACAAGACTTGCT 59.929 52.381 15.24 2.71 40.96 3.91
668 701 1.517242 CCACTCTGGACAAGACTTGC 58.483 55.000 15.24 7.93 40.96 4.01
669 702 1.071385 AGCCACTCTGGACAAGACTTG 59.929 52.381 13.77 13.77 40.96 3.16
670 703 1.346068 GAGCCACTCTGGACAAGACTT 59.654 52.381 0.00 0.00 40.96 3.01
671 704 0.972883 GAGCCACTCTGGACAAGACT 59.027 55.000 0.00 0.00 40.96 3.24
672 705 0.972883 AGAGCCACTCTGGACAAGAC 59.027 55.000 0.00 0.00 40.96 3.01
673 706 2.604912 TAGAGCCACTCTGGACAAGA 57.395 50.000 7.37 0.00 41.37 3.02
674 707 2.828520 TCTTAGAGCCACTCTGGACAAG 59.171 50.000 7.37 3.44 41.37 3.16
675 708 2.889512 TCTTAGAGCCACTCTGGACAA 58.110 47.619 7.37 0.00 41.37 3.18
676 709 2.604912 TCTTAGAGCCACTCTGGACA 57.395 50.000 7.37 0.00 41.37 4.02
677 710 2.102252 CCATCTTAGAGCCACTCTGGAC 59.898 54.545 7.37 0.00 41.37 4.02
678 711 2.023984 TCCATCTTAGAGCCACTCTGGA 60.024 50.000 7.37 3.28 41.37 3.86
679 712 2.392662 TCCATCTTAGAGCCACTCTGG 58.607 52.381 7.37 0.95 41.37 3.86
680 713 3.431486 GGTTCCATCTTAGAGCCACTCTG 60.431 52.174 7.37 0.00 41.37 3.35
695 728 1.003355 CGACACAGCAGGGTTCCAT 60.003 57.895 0.00 0.00 0.00 3.41
707 740 3.533079 TAGGGGTGAGGCCGACACA 62.533 63.158 27.74 12.89 39.65 3.72
743 776 2.279517 GAGGTGGTGATAGGCGCG 60.280 66.667 0.00 0.00 0.00 6.86
813 855 2.060383 CCTCGATCTGCCTGGTGGA 61.060 63.158 0.00 0.00 34.57 4.02
814 856 2.503061 CCTCGATCTGCCTGGTGG 59.497 66.667 0.00 0.00 0.00 4.61
1117 1223 6.644592 CGCCAGATATAAAGAAAGAAGAGAGG 59.355 42.308 0.00 0.00 0.00 3.69
1118 1224 7.429633 TCGCCAGATATAAAGAAAGAAGAGAG 58.570 38.462 0.00 0.00 0.00 3.20
1119 1225 7.348080 TCGCCAGATATAAAGAAAGAAGAGA 57.652 36.000 0.00 0.00 0.00 3.10
1139 1245 1.284408 CCTCGACATAGAGCTCGCC 59.716 63.158 8.37 0.00 36.95 5.54
1140 1246 0.317436 CACCTCGACATAGAGCTCGC 60.317 60.000 8.37 0.00 36.95 5.03
1141 1247 1.018148 ACACCTCGACATAGAGCTCG 58.982 55.000 8.37 0.00 36.95 5.03
1142 1248 3.549221 GCTAACACCTCGACATAGAGCTC 60.549 52.174 5.27 5.27 36.95 4.09
1143 1249 2.359531 GCTAACACCTCGACATAGAGCT 59.640 50.000 0.00 0.00 36.95 4.09
1144 1250 2.359531 AGCTAACACCTCGACATAGAGC 59.640 50.000 0.00 0.00 36.95 4.09
1149 1255 3.458189 GCATTAGCTAACACCTCGACAT 58.542 45.455 8.70 0.00 37.91 3.06
1151 1257 1.852895 CGCATTAGCTAACACCTCGAC 59.147 52.381 8.70 0.00 39.10 4.20
1189 1298 1.534028 GCACACACACGAACACAAAG 58.466 50.000 0.00 0.00 0.00 2.77
1193 1302 2.350760 GCGCACACACACGAACAC 60.351 61.111 0.30 0.00 0.00 3.32
1208 1317 2.840102 CTCCTCCCCTACCCTGCG 60.840 72.222 0.00 0.00 0.00 5.18
1443 1565 3.800736 AGGTAGGAGGAGGAGGAAATACT 59.199 47.826 0.00 0.00 0.00 2.12
1446 1568 2.425102 CGAGGTAGGAGGAGGAGGAAAT 60.425 54.545 0.00 0.00 0.00 2.17
1447 1569 1.063867 CGAGGTAGGAGGAGGAGGAAA 60.064 57.143 0.00 0.00 0.00 3.13
1562 1710 5.595952 GGAGCAATTAACAAAGAGATGGGAT 59.404 40.000 0.00 0.00 0.00 3.85
1564 1712 4.201950 CGGAGCAATTAACAAAGAGATGGG 60.202 45.833 0.00 0.00 0.00 4.00
1602 1753 2.513897 CGGCCAAATCCGGGAGAC 60.514 66.667 2.24 0.00 45.38 3.36
1620 1806 6.071320 GGATTAGAATAATGGGACCTTTGCT 58.929 40.000 0.00 0.00 0.00 3.91
1630 1816 5.478332 GGGGCTTCTTGGATTAGAATAATGG 59.522 44.000 0.00 0.00 33.89 3.16
1656 1842 0.883833 AGCAAATCTTGAACAGGGCG 59.116 50.000 0.00 0.00 0.00 6.13
1700 1891 1.066303 CACCGAGACAGGAGATGCTAC 59.934 57.143 0.00 0.00 34.73 3.58
1701 1892 1.393603 CACCGAGACAGGAGATGCTA 58.606 55.000 0.00 0.00 34.73 3.49
1702 1893 1.326213 CCACCGAGACAGGAGATGCT 61.326 60.000 0.00 0.00 34.73 3.79
1716 2057 6.071278 TCCCAAATAAATTAAAAGACCCACCG 60.071 38.462 0.00 0.00 0.00 4.94
1760 2111 5.998454 AGTGCCATCTAATCAAATCGAAG 57.002 39.130 0.00 0.00 0.00 3.79
1814 2230 5.045797 AGGAAGGACCAATAAACTACTCCAC 60.046 44.000 0.00 0.00 42.04 4.02
1815 2231 5.098663 AGGAAGGACCAATAAACTACTCCA 58.901 41.667 0.00 0.00 42.04 3.86
1816 2232 5.695424 AGGAAGGACCAATAAACTACTCC 57.305 43.478 0.00 0.00 42.04 3.85
1817 2233 6.473758 ACAAGGAAGGACCAATAAACTACTC 58.526 40.000 0.00 0.00 42.04 2.59
1907 2355 4.408821 TCCGTGGCATGGCAGGAC 62.409 66.667 35.20 18.73 0.00 3.85
1908 2356 4.408821 GTCCGTGGCATGGCAGGA 62.409 66.667 35.20 30.17 0.00 3.86
1910 2358 4.758251 TCGTCCGTGGCATGGCAG 62.758 66.667 24.03 15.90 0.00 4.85
1911 2359 3.620419 AATCGTCCGTGGCATGGCA 62.620 57.895 21.22 19.43 0.00 4.92
1912 2360 2.322999 GAAATCGTCCGTGGCATGGC 62.323 60.000 21.22 13.29 0.00 4.40
1913 2361 1.024046 TGAAATCGTCCGTGGCATGG 61.024 55.000 20.02 20.02 0.00 3.66
1914 2362 0.374758 CTGAAATCGTCCGTGGCATG 59.625 55.000 0.00 0.00 0.00 4.06
1915 2363 1.369091 GCTGAAATCGTCCGTGGCAT 61.369 55.000 0.00 0.00 0.00 4.40
1916 2364 2.032634 GCTGAAATCGTCCGTGGCA 61.033 57.895 0.00 0.00 0.00 4.92
1917 2365 2.785258 GCTGAAATCGTCCGTGGC 59.215 61.111 0.00 0.00 0.00 5.01
1918 2366 1.413767 CTCGCTGAAATCGTCCGTGG 61.414 60.000 0.00 0.00 0.00 4.94
1919 2367 1.991430 CTCGCTGAAATCGTCCGTG 59.009 57.895 0.00 0.00 0.00 4.94
1920 2368 1.805945 GCTCGCTGAAATCGTCCGT 60.806 57.895 0.00 0.00 0.00 4.69
1921 2369 2.517450 GGCTCGCTGAAATCGTCCG 61.517 63.158 0.00 0.00 0.00 4.79
1922 2370 2.517450 CGGCTCGCTGAAATCGTCC 61.517 63.158 0.00 0.00 0.00 4.79
1923 2371 1.743855 GACGGCTCGCTGAAATCGTC 61.744 60.000 4.48 2.82 39.73 4.20
1924 2372 1.805945 GACGGCTCGCTGAAATCGT 60.806 57.895 4.48 0.00 0.00 3.73
1925 2373 2.517450 GGACGGCTCGCTGAAATCG 61.517 63.158 4.48 0.00 0.00 3.34
1926 2374 1.153549 AGGACGGCTCGCTGAAATC 60.154 57.895 4.48 0.00 0.00 2.17
1927 2375 1.448540 CAGGACGGCTCGCTGAAAT 60.449 57.895 4.48 0.00 0.00 2.17
1928 2376 2.048222 CAGGACGGCTCGCTGAAA 60.048 61.111 4.48 0.00 0.00 2.69
1929 2377 4.742201 GCAGGACGGCTCGCTGAA 62.742 66.667 4.48 0.00 0.00 3.02
2042 2519 3.479269 CGCAGGAACGAGGAACGC 61.479 66.667 0.00 0.00 46.94 4.84
2051 2534 8.822318 CAATCATTGATTTACCCCGCAGGAAC 62.822 46.154 9.19 0.00 39.45 3.62
2068 2551 2.246469 TGTCCACCCAACCAATCATTG 58.754 47.619 0.00 0.00 0.00 2.82
2082 2565 4.162320 TCCTGGATCTATCTGTTTGTCCAC 59.838 45.833 0.00 0.00 32.69 4.02
2089 2576 1.689273 GCCGTCCTGGATCTATCTGTT 59.311 52.381 0.00 0.00 42.00 3.16
2155 2654 1.888436 CTAGTCTCAGGCCGTGGCAA 61.888 60.000 13.76 0.00 44.11 4.52
2190 2689 1.079405 TCCCATTCCGACGCAAGAC 60.079 57.895 0.00 0.00 43.62 3.01
2228 2727 4.114794 GCTCATGCATATGGACCAAAAAC 58.885 43.478 0.00 0.00 39.41 2.43
2234 2733 0.250467 ACGGCTCATGCATATGGACC 60.250 55.000 0.00 0.00 41.91 4.46
2235 2734 1.151668 GACGGCTCATGCATATGGAC 58.848 55.000 0.00 0.00 41.91 4.02
2237 2736 1.904852 GCGACGGCTCATGCATATGG 61.905 60.000 0.00 0.00 41.91 2.74
2238 2737 1.223417 TGCGACGGCTCATGCATATG 61.223 55.000 0.00 0.00 41.91 1.78
2240 2739 1.069596 ATGCGACGGCTCATGCATA 59.930 52.632 0.00 0.00 45.56 3.14
2241 2740 2.203112 ATGCGACGGCTCATGCAT 60.203 55.556 0.00 0.00 42.84 3.96
2242 2741 2.891936 GATGCGACGGCTCATGCA 60.892 61.111 0.00 0.00 41.91 3.96
2243 2742 1.779025 AATGATGCGACGGCTCATGC 61.779 55.000 0.00 0.00 37.22 4.06
2244 2743 0.041576 CAATGATGCGACGGCTCATG 60.042 55.000 0.00 0.00 37.22 3.07
2245 2744 0.462581 ACAATGATGCGACGGCTCAT 60.463 50.000 0.00 0.00 38.10 2.90
2246 2745 0.673333 AACAATGATGCGACGGCTCA 60.673 50.000 0.00 0.00 40.82 4.26
2247 2746 0.247814 CAACAATGATGCGACGGCTC 60.248 55.000 0.00 0.00 40.82 4.70
2248 2747 0.673333 TCAACAATGATGCGACGGCT 60.673 50.000 0.00 0.00 40.82 5.52
2249 2748 0.521242 GTCAACAATGATGCGACGGC 60.521 55.000 0.00 0.00 38.01 5.68
2269 2768 0.608640 AAAACCACGCACAAACCCAA 59.391 45.000 0.00 0.00 0.00 4.12
2277 2776 0.248458 CACACAGGAAAACCACGCAC 60.248 55.000 0.00 0.00 0.00 5.34
2278 2777 0.678366 ACACACAGGAAAACCACGCA 60.678 50.000 0.00 0.00 0.00 5.24
2279 2778 0.454196 AACACACAGGAAAACCACGC 59.546 50.000 0.00 0.00 0.00 5.34
2280 2779 1.797348 GCAACACACAGGAAAACCACG 60.797 52.381 0.00 0.00 0.00 4.94
2281 2780 1.203523 TGCAACACACAGGAAAACCAC 59.796 47.619 0.00 0.00 0.00 4.16
2282 2781 1.476085 CTGCAACACACAGGAAAACCA 59.524 47.619 0.00 0.00 0.00 3.67
2283 2782 1.476488 ACTGCAACACACAGGAAAACC 59.524 47.619 0.00 0.00 39.55 3.27
2284 2783 2.791158 CGACTGCAACACACAGGAAAAC 60.791 50.000 0.00 0.00 39.55 2.43
2287 2786 0.813610 CCGACTGCAACACACAGGAA 60.814 55.000 0.00 0.00 39.55 3.36
2288 2787 1.227527 CCGACTGCAACACACAGGA 60.228 57.895 0.00 0.00 39.55 3.86
2289 2788 2.253758 CCCGACTGCAACACACAGG 61.254 63.158 0.00 0.00 39.55 4.00
2290 2789 0.249699 TACCCGACTGCAACACACAG 60.250 55.000 0.00 0.00 41.08 3.66
2291 2790 0.531090 GTACCCGACTGCAACACACA 60.531 55.000 0.00 0.00 0.00 3.72
2292 2791 1.554042 CGTACCCGACTGCAACACAC 61.554 60.000 0.00 0.00 35.63 3.82
2293 2792 1.300311 CGTACCCGACTGCAACACA 60.300 57.895 0.00 0.00 35.63 3.72
2294 2793 2.025418 CCGTACCCGACTGCAACAC 61.025 63.158 0.00 0.00 35.63 3.32
2295 2794 2.030490 AACCGTACCCGACTGCAACA 62.030 55.000 0.00 0.00 35.63 3.33
2602 3117 1.818785 GCAGCTGAGCAGATCCCAC 60.819 63.158 20.43 0.00 0.00 4.61
2714 3232 1.085091 GCAAGTGATCAGCAGGACAG 58.915 55.000 0.00 0.00 0.00 3.51
2715 3233 0.689055 AGCAAGTGATCAGCAGGACA 59.311 50.000 8.02 0.00 0.00 4.02
2716 3234 1.085091 CAGCAAGTGATCAGCAGGAC 58.915 55.000 8.02 0.00 0.00 3.85
2717 3235 0.689055 ACAGCAAGTGATCAGCAGGA 59.311 50.000 8.02 0.00 0.00 3.86
2718 3236 1.531423 AACAGCAAGTGATCAGCAGG 58.469 50.000 8.02 2.75 0.00 4.85
2719 3237 3.637998 AAAACAGCAAGTGATCAGCAG 57.362 42.857 8.02 2.73 0.00 4.24
2720 3238 5.474532 AGATAAAAACAGCAAGTGATCAGCA 59.525 36.000 8.02 0.00 0.00 4.41
2721 3239 5.947443 AGATAAAAACAGCAAGTGATCAGC 58.053 37.500 0.00 0.00 0.00 4.26
2722 3240 7.814642 AGAAGATAAAAACAGCAAGTGATCAG 58.185 34.615 0.00 0.00 0.00 2.90
2723 3241 7.663081 AGAGAAGATAAAAACAGCAAGTGATCA 59.337 33.333 0.00 0.00 0.00 2.92
2724 3242 7.961827 CAGAGAAGATAAAAACAGCAAGTGATC 59.038 37.037 0.00 0.00 0.00 2.92
2725 3243 7.574592 GCAGAGAAGATAAAAACAGCAAGTGAT 60.575 37.037 0.00 0.00 0.00 3.06
2726 3244 6.293626 GCAGAGAAGATAAAAACAGCAAGTGA 60.294 38.462 0.00 0.00 0.00 3.41
2727 3245 5.855395 GCAGAGAAGATAAAAACAGCAAGTG 59.145 40.000 0.00 0.00 0.00 3.16
2728 3246 5.532406 TGCAGAGAAGATAAAAACAGCAAGT 59.468 36.000 0.00 0.00 0.00 3.16
2729 3247 6.005583 TGCAGAGAAGATAAAAACAGCAAG 57.994 37.500 0.00 0.00 0.00 4.01
2730 3248 6.384224 CATGCAGAGAAGATAAAAACAGCAA 58.616 36.000 0.00 0.00 0.00 3.91
2731 3249 5.620654 GCATGCAGAGAAGATAAAAACAGCA 60.621 40.000 14.21 0.00 0.00 4.41
2732 3250 4.797349 GCATGCAGAGAAGATAAAAACAGC 59.203 41.667 14.21 0.00 0.00 4.40
2733 3251 6.093771 AGAGCATGCAGAGAAGATAAAAACAG 59.906 38.462 21.98 0.00 0.00 3.16
2734 3252 5.942236 AGAGCATGCAGAGAAGATAAAAACA 59.058 36.000 21.98 0.00 0.00 2.83
2735 3253 6.256686 CAGAGCATGCAGAGAAGATAAAAAC 58.743 40.000 21.98 0.00 0.00 2.43
2736 3254 6.432607 CAGAGCATGCAGAGAAGATAAAAA 57.567 37.500 21.98 0.00 0.00 1.94
2751 3269 4.175489 GCACGGCAGCAGAGCATG 62.175 66.667 9.95 0.00 35.83 4.06
2752 3270 4.405671 AGCACGGCAGCAGAGCAT 62.406 61.111 16.48 0.25 36.85 3.79
2755 3273 0.460811 TAATCAGCACGGCAGCAGAG 60.461 55.000 0.00 0.00 33.43 3.35
2756 3274 0.460811 CTAATCAGCACGGCAGCAGA 60.461 55.000 0.00 0.00 36.85 4.26
2757 3275 0.742281 ACTAATCAGCACGGCAGCAG 60.742 55.000 0.00 0.00 36.85 4.24
2758 3276 0.321564 AACTAATCAGCACGGCAGCA 60.322 50.000 0.00 0.00 36.85 4.41
2759 3277 0.804989 AAACTAATCAGCACGGCAGC 59.195 50.000 0.00 0.00 0.00 5.25
2851 3425 0.536006 AACACAGGCTCTGCTTGTCC 60.536 55.000 4.36 0.00 45.43 4.02
2911 3485 5.809562 CCTAAGAAAGCACAGATCACAGTAG 59.190 44.000 0.00 0.00 0.00 2.57
2914 3488 4.573900 ACCTAAGAAAGCACAGATCACAG 58.426 43.478 0.00 0.00 0.00 3.66
2915 3489 4.623932 ACCTAAGAAAGCACAGATCACA 57.376 40.909 0.00 0.00 0.00 3.58
2929 3505 6.472887 ACTACTGCAAAGCAATTACCTAAGA 58.527 36.000 0.00 0.00 38.41 2.10
2952 3528 3.369261 CCAGAGAGCATGGCCAGATATAC 60.369 52.174 13.05 1.34 0.00 1.47
2953 3529 2.836372 CCAGAGAGCATGGCCAGATATA 59.164 50.000 13.05 0.00 0.00 0.86
2954 3530 1.629353 CCAGAGAGCATGGCCAGATAT 59.371 52.381 13.05 0.00 0.00 1.63
2955 3531 1.054231 CCAGAGAGCATGGCCAGATA 58.946 55.000 13.05 0.00 0.00 1.98
2956 3532 1.706995 CCCAGAGAGCATGGCCAGAT 61.707 60.000 13.05 1.36 36.43 2.90
2986 3562 0.965363 TTTCGCAATCTTCCCAGGCC 60.965 55.000 0.00 0.00 0.00 5.19
2992 3568 2.160417 CCACTCTGTTTCGCAATCTTCC 59.840 50.000 0.00 0.00 0.00 3.46
3063 3639 2.932614 GCAGAGTATGCGTGTGAATCTT 59.067 45.455 0.00 0.00 46.99 2.40
3118 3694 3.225235 GCAGGGGCTAGGTCTGAG 58.775 66.667 0.00 0.00 36.96 3.35
3167 3743 6.427853 GGAAGAAAGGCAGCAAAAATAAATGT 59.572 34.615 0.00 0.00 0.00 2.71
3176 3752 2.233271 CAGAGGAAGAAAGGCAGCAAA 58.767 47.619 0.00 0.00 0.00 3.68
3227 3803 7.362056 GCAGAACTGACATTATTTTCTAGCCAA 60.362 37.037 5.97 0.00 0.00 4.52
3255 3994 2.621526 AGAAACCGGTAAGTTTTGCTGG 59.378 45.455 8.00 3.59 46.07 4.85
3270 4009 0.827507 TGCAGGGAAAGGCAGAAACC 60.828 55.000 0.00 0.00 34.58 3.27
3361 4104 4.347876 AGCAAACCCCAGAAATAAAAGCTT 59.652 37.500 0.00 0.00 0.00 3.74
3415 4159 1.209747 GGAGCTTCGGTAAAGGGACAT 59.790 52.381 0.00 0.00 35.37 3.06
3433 4177 3.763897 GGTAACCCTACTACAAAGACGGA 59.236 47.826 0.00 0.00 0.00 4.69
3551 4299 7.079182 TCGTGACAGAGTAAAACAAAACAAT 57.921 32.000 0.00 0.00 0.00 2.71
3663 4450 7.335171 TGAAACTTATTGGACAGTGATGATCAG 59.665 37.037 0.09 0.00 0.00 2.90
3664 4451 7.167535 TGAAACTTATTGGACAGTGATGATCA 58.832 34.615 0.00 0.00 0.00 2.92
3671 4458 5.934625 ACTAGCTGAAACTTATTGGACAGTG 59.065 40.000 0.00 0.00 0.00 3.66
3692 4479 7.126879 TCCTCACTGTACTGGAGTTCTATACTA 59.873 40.741 4.66 0.00 37.17 1.82
3693 4480 6.069556 TCCTCACTGTACTGGAGTTCTATACT 60.070 42.308 4.66 0.00 40.71 2.12
3694 4481 6.120905 TCCTCACTGTACTGGAGTTCTATAC 58.879 44.000 4.66 0.00 0.00 1.47
3704 4491 2.028930 GGTGTTCTCCTCACTGTACTGG 60.029 54.545 4.66 0.00 36.25 4.00
3760 4567 3.278574 AGTTGCACAAGTTAGCTCACAA 58.721 40.909 0.03 0.00 0.00 3.33
3761 4568 2.872245 GAGTTGCACAAGTTAGCTCACA 59.128 45.455 0.03 0.00 0.00 3.58
3762 4569 2.872245 TGAGTTGCACAAGTTAGCTCAC 59.128 45.455 0.00 0.00 0.00 3.51
3763 4570 3.133691 CTGAGTTGCACAAGTTAGCTCA 58.866 45.455 0.00 0.00 0.00 4.26
3764 4571 2.481952 CCTGAGTTGCACAAGTTAGCTC 59.518 50.000 0.00 0.00 0.00 4.09
3765 4572 2.158755 ACCTGAGTTGCACAAGTTAGCT 60.159 45.455 4.84 0.00 0.00 3.32
3766 4573 2.222027 ACCTGAGTTGCACAAGTTAGC 58.778 47.619 4.84 0.00 0.00 3.09
3769 5071 4.516698 CAGAATACCTGAGTTGCACAAGTT 59.483 41.667 0.00 0.00 45.78 2.66
3780 5082 2.975489 ACCCATAGGCAGAATACCTGAG 59.025 50.000 0.00 0.00 44.58 3.35
3840 5142 3.785859 GGTCTCCATGGCCGCAGA 61.786 66.667 6.96 1.13 0.00 4.26
3854 5156 0.824759 AGTAGTTCTCCATGGCGGTC 59.175 55.000 6.96 0.00 35.57 4.79
3866 5168 0.175760 TCAGGCGGCATGAGTAGTTC 59.824 55.000 13.97 0.00 0.00 3.01
3902 5204 0.975040 AGCTGGCGAGTGAGAAGGAT 60.975 55.000 0.00 0.00 0.00 3.24
3950 5252 2.491621 CAGATCGCGCTCTGGTCA 59.508 61.111 27.78 0.00 39.20 4.02
3995 5297 2.970639 CCGCCGAAGAAGGACAGA 59.029 61.111 0.00 0.00 0.00 3.41
4037 5354 3.997064 CTCCTGCTTCACCGCCGAG 62.997 68.421 0.00 0.00 0.00 4.63
4127 5448 1.443194 GCTGCTGTTGTTGGCATCG 60.443 57.895 0.00 0.00 37.83 3.84
4130 5451 1.141449 GTTGCTGCTGTTGTTGGCA 59.859 52.632 0.00 0.00 36.94 4.92
4141 5462 3.793144 CCGAGAAGGCGTTGCTGC 61.793 66.667 0.00 0.00 0.00 5.25
4293 5617 1.188219 AGACCAGAGAGCTTCGGCAA 61.188 55.000 0.00 0.00 44.74 4.52
4294 5618 1.607756 AGACCAGAGAGCTTCGGCA 60.608 57.895 0.00 0.00 44.74 5.69
4395 5745 1.665679 AGCATCCATACAAAACGAGCG 59.334 47.619 0.00 0.00 0.00 5.03
4400 5750 3.874392 AAGGCAGCATCCATACAAAAC 57.126 42.857 0.00 0.00 0.00 2.43
4447 5799 9.181805 GGAAGAAAAATAAACAAGTAGTGCTTC 57.818 33.333 0.00 0.00 34.69 3.86
4565 5920 0.318614 AATTGCGCGGGAAACAGTTG 60.319 50.000 8.83 0.00 0.00 3.16
4658 7154 0.392863 TCCAGCCATGTGACGGATTG 60.393 55.000 0.00 0.00 0.00 2.67
4695 7202 0.845768 CAAAGCAAAAACACGCGAGG 59.154 50.000 15.93 7.12 0.00 4.63
4729 7236 1.598130 CGGATCGGGGAAGGATTGC 60.598 63.158 0.00 0.00 34.72 3.56
4730 7237 1.071471 CCGGATCGGGGAAGGATTG 59.929 63.158 11.44 0.00 44.15 2.67
4761 7272 1.721664 TACTCGTCGGAGGATTGCGG 61.722 60.000 0.27 0.00 44.93 5.69
4797 7311 1.986882 CTCCCATAACTTGCCCATCC 58.013 55.000 0.00 0.00 0.00 3.51
4872 7387 0.179089 CCCCTTGCGTCTCATCTCAG 60.179 60.000 0.00 0.00 0.00 3.35
4914 7429 1.383409 TGCCCATGCATCTTGACCA 59.617 52.632 0.00 0.00 44.23 4.02
4915 7430 4.342427 TGCCCATGCATCTTGACC 57.658 55.556 0.00 0.00 44.23 4.02
5007 7530 1.603739 GCCTGTTCCTCCACCAACC 60.604 63.158 0.00 0.00 0.00 3.77
5029 7552 2.359975 CCCCACGCTCAAGGGTTC 60.360 66.667 0.00 0.00 43.89 3.62
5056 7760 4.680237 CGCGTGCTTCCCAGACCA 62.680 66.667 0.00 0.00 0.00 4.02
5103 7830 3.117738 ACGTATAGTAGGTACCCTGCACT 60.118 47.826 8.74 9.56 38.73 4.40
5219 7977 1.301165 TCGTCTCGTCCACTCGTGA 60.301 57.895 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.