Multiple sequence alignment - TraesCS2B01G458000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G458000 chr2B 100.000 2823 0 0 1 2823 652575699 652578521 0.000000e+00 5214
1 TraesCS2B01G458000 chr2B 86.737 377 34 9 2377 2752 652600613 652600974 3.390000e-109 405
2 TraesCS2B01G458000 chr2B 92.481 133 10 0 1944 2076 652599757 652599889 1.030000e-44 191
3 TraesCS2B01G458000 chr2B 95.312 64 2 1 2761 2823 652603894 652603957 1.790000e-17 100
4 TraesCS2B01G458000 chr2D 86.867 2330 142 65 520 2803 545933210 545935421 0.000000e+00 2457
5 TraesCS2B01G458000 chr2D 88.431 510 29 15 5 500 545861988 545862481 3.130000e-164 588
6 TraesCS2B01G458000 chr2A 88.829 1665 89 53 679 2297 686995202 686996815 0.000000e+00 1954
7 TraesCS2B01G458000 chr2A 93.737 479 25 4 1 476 689192780 689192304 0.000000e+00 713
8 TraesCS2B01G458000 chr2A 93.706 143 9 0 2392 2534 686997011 686997153 6.120000e-52 215
9 TraesCS2B01G458000 chr2A 95.833 96 2 2 528 622 686995092 686995186 1.350000e-33 154


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G458000 chr2B 652575699 652578521 2822 False 5214.000000 5214 100.000000 1 2823 1 chr2B.!!$F1 2822
1 TraesCS2B01G458000 chr2B 652599757 652603957 4200 False 232.000000 405 91.510000 1944 2823 3 chr2B.!!$F2 879
2 TraesCS2B01G458000 chr2D 545933210 545935421 2211 False 2457.000000 2457 86.867000 520 2803 1 chr2D.!!$F2 2283
3 TraesCS2B01G458000 chr2A 686995092 686997153 2061 False 774.333333 1954 92.789333 528 2534 3 chr2A.!!$F1 2006

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
318 319 0.035317 TCCAGAATTGCAGTGCTCGT 59.965 50.0 17.6 0.2 0.0 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1909 1977 0.179073 AGGTGCCTGCGATGATACAC 60.179 55.0 0.0 0.0 0.0 2.9 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.108976 TCATTCTCATCCGGCGCC 59.891 61.111 19.07 19.07 0.00 6.53
18 19 3.341043 CATTCTCATCCGGCGCCG 61.341 66.667 41.00 41.00 39.44 6.46
31 32 4.492160 CGCCGGCGCTTCAGTAGA 62.492 66.667 38.48 0.00 0.00 2.59
32 33 2.125673 GCCGGCGCTTCAGTAGAA 60.126 61.111 12.58 0.00 0.00 2.10
33 34 1.740296 GCCGGCGCTTCAGTAGAAA 60.740 57.895 12.58 0.00 32.35 2.52
34 35 1.967597 GCCGGCGCTTCAGTAGAAAC 61.968 60.000 12.58 0.00 32.35 2.78
35 36 1.683790 CCGGCGCTTCAGTAGAAACG 61.684 60.000 7.64 0.00 44.01 3.60
36 37 1.007336 CGGCGCTTCAGTAGAAACGT 61.007 55.000 7.64 0.00 43.32 3.99
37 38 0.714439 GGCGCTTCAGTAGAAACGTC 59.286 55.000 7.64 0.00 43.32 4.34
38 39 1.415374 GCGCTTCAGTAGAAACGTCA 58.585 50.000 0.00 0.00 43.32 4.35
39 40 1.124477 GCGCTTCAGTAGAAACGTCAC 59.876 52.381 0.00 0.00 43.32 3.67
40 41 2.390938 CGCTTCAGTAGAAACGTCACA 58.609 47.619 0.00 0.00 38.25 3.58
41 42 2.987149 CGCTTCAGTAGAAACGTCACAT 59.013 45.455 0.00 0.00 38.25 3.21
42 43 3.181540 CGCTTCAGTAGAAACGTCACATG 60.182 47.826 0.00 0.00 38.25 3.21
43 44 3.987868 GCTTCAGTAGAAACGTCACATGA 59.012 43.478 0.00 0.00 32.35 3.07
44 45 4.447724 GCTTCAGTAGAAACGTCACATGAA 59.552 41.667 0.00 0.00 32.35 2.57
45 46 5.120830 GCTTCAGTAGAAACGTCACATGAAT 59.879 40.000 0.00 0.00 32.35 2.57
46 47 6.310467 GCTTCAGTAGAAACGTCACATGAATA 59.690 38.462 0.00 0.00 32.35 1.75
47 48 7.463383 GCTTCAGTAGAAACGTCACATGAATAG 60.463 40.741 0.00 0.00 32.35 1.73
48 49 6.920817 TCAGTAGAAACGTCACATGAATAGT 58.079 36.000 0.00 0.00 0.00 2.12
49 50 8.047413 TCAGTAGAAACGTCACATGAATAGTA 57.953 34.615 0.00 0.00 0.00 1.82
50 51 8.517056 TCAGTAGAAACGTCACATGAATAGTAA 58.483 33.333 0.00 0.00 0.00 2.24
51 52 8.799091 CAGTAGAAACGTCACATGAATAGTAAG 58.201 37.037 0.00 0.00 0.00 2.34
52 53 8.737175 AGTAGAAACGTCACATGAATAGTAAGA 58.263 33.333 0.00 0.00 0.00 2.10
53 54 9.350357 GTAGAAACGTCACATGAATAGTAAGAA 57.650 33.333 0.00 0.00 0.00 2.52
54 55 8.240883 AGAAACGTCACATGAATAGTAAGAAC 57.759 34.615 0.00 0.00 0.00 3.01
55 56 7.870954 AGAAACGTCACATGAATAGTAAGAACA 59.129 33.333 0.00 0.00 0.00 3.18
56 57 6.946229 ACGTCACATGAATAGTAAGAACAC 57.054 37.500 0.00 0.00 0.00 3.32
57 58 6.452242 ACGTCACATGAATAGTAAGAACACA 58.548 36.000 0.00 0.00 0.00 3.72
58 59 6.586463 ACGTCACATGAATAGTAAGAACACAG 59.414 38.462 0.00 0.00 0.00 3.66
59 60 6.806739 CGTCACATGAATAGTAAGAACACAGA 59.193 38.462 0.00 0.00 0.00 3.41
60 61 7.489435 CGTCACATGAATAGTAAGAACACAGAT 59.511 37.037 0.00 0.00 0.00 2.90
61 62 8.812329 GTCACATGAATAGTAAGAACACAGATC 58.188 37.037 0.00 0.00 0.00 2.75
62 63 8.753133 TCACATGAATAGTAAGAACACAGATCT 58.247 33.333 0.00 0.00 0.00 2.75
63 64 9.376075 CACATGAATAGTAAGAACACAGATCTT 57.624 33.333 0.00 0.00 40.18 2.40
64 65 9.593134 ACATGAATAGTAAGAACACAGATCTTC 57.407 33.333 0.00 0.00 38.13 2.87
65 66 9.039870 CATGAATAGTAAGAACACAGATCTTCC 57.960 37.037 0.00 0.00 38.13 3.46
66 67 7.556844 TGAATAGTAAGAACACAGATCTTCCC 58.443 38.462 0.00 0.00 38.13 3.97
67 68 4.457834 AGTAAGAACACAGATCTTCCCG 57.542 45.455 0.00 0.00 38.13 5.14
68 69 2.100605 AAGAACACAGATCTTCCCGC 57.899 50.000 0.00 0.00 31.61 6.13
69 70 0.250513 AGAACACAGATCTTCCCGCC 59.749 55.000 0.00 0.00 0.00 6.13
70 71 0.036388 GAACACAGATCTTCCCGCCA 60.036 55.000 0.00 0.00 0.00 5.69
71 72 0.400213 AACACAGATCTTCCCGCCAA 59.600 50.000 0.00 0.00 0.00 4.52
72 73 0.400213 ACACAGATCTTCCCGCCAAA 59.600 50.000 0.00 0.00 0.00 3.28
73 74 1.202879 ACACAGATCTTCCCGCCAAAA 60.203 47.619 0.00 0.00 0.00 2.44
74 75 1.885887 CACAGATCTTCCCGCCAAAAA 59.114 47.619 0.00 0.00 0.00 1.94
110 111 9.503427 AAAAAGAAAAAGTAAGAACACAGATCG 57.497 29.630 0.00 0.00 0.00 3.69
111 112 7.787725 AAGAAAAAGTAAGAACACAGATCGT 57.212 32.000 0.00 0.00 0.00 3.73
121 122 3.050703 ACAGATCGTGATGAACCGC 57.949 52.632 0.00 0.00 0.00 5.68
122 123 0.802222 ACAGATCGTGATGAACCGCG 60.802 55.000 0.00 0.00 40.97 6.46
123 124 1.878522 AGATCGTGATGAACCGCGC 60.879 57.895 0.00 0.00 39.62 6.86
124 125 3.197569 GATCGTGATGAACCGCGCG 62.198 63.158 25.67 25.67 39.62 6.86
139 140 4.916293 GCGCCTCCATGCATCGGA 62.916 66.667 14.60 14.60 0.00 4.55
140 141 2.031616 CGCCTCCATGCATCGGAT 59.968 61.111 15.42 0.00 0.00 4.18
141 142 2.322830 CGCCTCCATGCATCGGATG 61.323 63.158 13.63 13.63 0.00 3.51
142 143 1.970114 GCCTCCATGCATCGGATGG 60.970 63.158 18.96 17.19 41.70 3.51
143 144 1.756665 CCTCCATGCATCGGATGGA 59.243 57.895 18.96 16.93 45.90 3.41
145 146 2.838804 TCCATGCATCGGATGGAGA 58.161 52.632 18.96 8.50 43.71 3.71
146 147 1.130777 TCCATGCATCGGATGGAGAA 58.869 50.000 18.96 3.97 43.71 2.87
147 148 1.071228 TCCATGCATCGGATGGAGAAG 59.929 52.381 18.96 10.40 43.71 2.85
148 149 0.873054 CATGCATCGGATGGAGAAGC 59.127 55.000 18.96 4.60 32.88 3.86
149 150 0.763652 ATGCATCGGATGGAGAAGCT 59.236 50.000 18.96 0.00 32.88 3.74
150 151 0.543277 TGCATCGGATGGAGAAGCTT 59.457 50.000 18.96 0.00 0.00 3.74
151 152 1.065199 TGCATCGGATGGAGAAGCTTT 60.065 47.619 18.96 0.00 0.00 3.51
152 153 1.601430 GCATCGGATGGAGAAGCTTTC 59.399 52.381 18.96 0.04 0.00 2.62
153 154 2.744494 GCATCGGATGGAGAAGCTTTCT 60.744 50.000 18.96 0.00 44.21 2.52
168 169 7.690256 AGAAGCTTTCTCTATTTTTCCTACCA 58.310 34.615 0.00 0.00 34.07 3.25
169 170 8.164070 AGAAGCTTTCTCTATTTTTCCTACCAA 58.836 33.333 0.00 0.00 34.07 3.67
170 171 8.706322 AAGCTTTCTCTATTTTTCCTACCAAA 57.294 30.769 0.00 0.00 0.00 3.28
171 172 8.706322 AGCTTTCTCTATTTTTCCTACCAAAA 57.294 30.769 0.00 0.00 0.00 2.44
172 173 8.577296 AGCTTTCTCTATTTTTCCTACCAAAAC 58.423 33.333 0.00 0.00 0.00 2.43
173 174 7.537649 GCTTTCTCTATTTTTCCTACCAAAACG 59.462 37.037 0.00 0.00 0.00 3.60
174 175 7.443259 TTCTCTATTTTTCCTACCAAAACGG 57.557 36.000 0.00 0.00 42.50 4.44
175 176 6.771573 TCTCTATTTTTCCTACCAAAACGGA 58.228 36.000 0.00 0.00 38.63 4.69
176 177 6.877322 TCTCTATTTTTCCTACCAAAACGGAG 59.123 38.462 0.00 0.00 38.63 4.63
177 178 6.771573 TCTATTTTTCCTACCAAAACGGAGA 58.228 36.000 0.00 0.00 38.63 3.71
178 179 5.700722 ATTTTTCCTACCAAAACGGAGAC 57.299 39.130 0.00 0.00 38.63 3.36
190 191 3.520402 GGAGACGGAGAGCAGGAG 58.480 66.667 0.00 0.00 0.00 3.69
191 192 2.781158 GGAGACGGAGAGCAGGAGC 61.781 68.421 0.00 0.00 42.56 4.70
201 202 2.032681 GCAGGAGCGAACCAGGTT 59.967 61.111 3.79 3.79 0.00 3.50
202 203 2.035442 GCAGGAGCGAACCAGGTTC 61.035 63.158 21.18 21.18 38.97 3.62
203 204 1.371183 CAGGAGCGAACCAGGTTCA 59.629 57.895 28.47 0.00 42.05 3.18
204 205 0.951040 CAGGAGCGAACCAGGTTCAC 60.951 60.000 28.47 20.73 42.05 3.18
205 206 2.027625 GGAGCGAACCAGGTTCACG 61.028 63.158 28.47 18.82 42.05 4.35
206 207 2.027625 GAGCGAACCAGGTTCACGG 61.028 63.158 28.47 15.49 42.05 4.94
207 208 3.047877 GCGAACCAGGTTCACGGG 61.048 66.667 28.47 15.16 42.05 5.28
208 209 2.738480 CGAACCAGGTTCACGGGA 59.262 61.111 28.47 0.00 42.05 5.14
209 210 1.374252 CGAACCAGGTTCACGGGAG 60.374 63.158 28.47 10.18 42.05 4.30
210 211 1.003718 GAACCAGGTTCACGGGAGG 60.004 63.158 25.34 0.00 41.62 4.30
211 212 1.460689 AACCAGGTTCACGGGAGGA 60.461 57.895 0.00 0.00 37.90 3.71
212 213 1.765597 AACCAGGTTCACGGGAGGAC 61.766 60.000 0.00 0.00 37.90 3.85
213 214 2.261671 CAGGTTCACGGGAGGACG 59.738 66.667 0.00 0.00 40.31 4.79
214 215 2.116772 AGGTTCACGGGAGGACGA 59.883 61.111 0.00 0.00 37.61 4.20
215 216 2.260743 GGTTCACGGGAGGACGAC 59.739 66.667 0.00 0.00 37.61 4.34
216 217 2.126580 GTTCACGGGAGGACGACG 60.127 66.667 0.00 0.00 37.61 5.12
217 218 2.281692 TTCACGGGAGGACGACGA 60.282 61.111 0.00 0.00 37.61 4.20
218 219 2.330372 TTCACGGGAGGACGACGAG 61.330 63.158 0.00 0.00 37.61 4.18
219 220 2.736579 TTCACGGGAGGACGACGAGA 62.737 60.000 0.00 0.00 37.61 4.04
220 221 2.113433 CACGGGAGGACGACGAGAT 61.113 63.158 0.00 0.00 37.61 2.75
221 222 1.818785 ACGGGAGGACGACGAGATC 60.819 63.158 0.00 0.00 37.61 2.75
231 232 3.175724 ACGAGATCGACGTCGCTT 58.824 55.556 32.19 21.65 43.02 4.68
232 233 1.226046 ACGAGATCGACGTCGCTTG 60.226 57.895 32.19 26.92 43.02 4.01
233 234 2.560151 CGAGATCGACGTCGCTTGC 61.560 63.158 32.19 19.55 43.02 4.01
234 235 1.226435 GAGATCGACGTCGCTTGCT 60.226 57.895 32.19 23.49 39.60 3.91
235 236 1.197368 GAGATCGACGTCGCTTGCTC 61.197 60.000 32.19 26.47 39.60 4.26
236 237 2.202623 ATCGACGTCGCTTGCTCC 60.203 61.111 32.19 0.00 39.60 4.70
237 238 2.867333 GATCGACGTCGCTTGCTCCA 62.867 60.000 32.19 13.58 39.60 3.86
238 239 2.284798 ATCGACGTCGCTTGCTCCAT 62.285 55.000 32.19 15.32 39.60 3.41
239 240 2.508891 CGACGTCGCTTGCTCCATC 61.509 63.158 26.59 0.00 0.00 3.51
240 241 1.153745 GACGTCGCTTGCTCCATCT 60.154 57.895 0.00 0.00 0.00 2.90
241 242 0.737715 GACGTCGCTTGCTCCATCTT 60.738 55.000 0.00 0.00 0.00 2.40
242 243 0.737715 ACGTCGCTTGCTCCATCTTC 60.738 55.000 0.00 0.00 0.00 2.87
243 244 0.459237 CGTCGCTTGCTCCATCTTCT 60.459 55.000 0.00 0.00 0.00 2.85
244 245 1.731720 GTCGCTTGCTCCATCTTCTT 58.268 50.000 0.00 0.00 0.00 2.52
245 246 1.663135 GTCGCTTGCTCCATCTTCTTC 59.337 52.381 0.00 0.00 0.00 2.87
246 247 0.649475 CGCTTGCTCCATCTTCTTCG 59.351 55.000 0.00 0.00 0.00 3.79
247 248 1.737029 CGCTTGCTCCATCTTCTTCGA 60.737 52.381 0.00 0.00 0.00 3.71
248 249 2.559440 GCTTGCTCCATCTTCTTCGAT 58.441 47.619 0.00 0.00 0.00 3.59
249 250 2.287373 GCTTGCTCCATCTTCTTCGATG 59.713 50.000 0.00 0.00 40.32 3.84
266 267 3.843426 GATGGTGTCGAGCGAATTTAG 57.157 47.619 0.00 0.00 0.00 1.85
267 268 1.355971 TGGTGTCGAGCGAATTTAGC 58.644 50.000 0.00 0.00 0.00 3.09
268 269 1.337354 TGGTGTCGAGCGAATTTAGCA 60.337 47.619 4.30 0.00 37.01 3.49
269 270 1.324736 GGTGTCGAGCGAATTTAGCAG 59.675 52.381 4.30 0.00 37.01 4.24
270 271 1.993370 GTGTCGAGCGAATTTAGCAGT 59.007 47.619 4.30 0.00 37.01 4.40
271 272 2.412089 GTGTCGAGCGAATTTAGCAGTT 59.588 45.455 4.30 0.00 37.01 3.16
272 273 2.666508 TGTCGAGCGAATTTAGCAGTTC 59.333 45.455 4.30 0.00 37.01 3.01
273 274 2.924290 GTCGAGCGAATTTAGCAGTTCT 59.076 45.455 4.30 0.00 37.01 3.01
274 275 3.000575 GTCGAGCGAATTTAGCAGTTCTC 60.001 47.826 4.30 0.00 37.01 2.87
275 276 2.282820 CGAGCGAATTTAGCAGTTCTCC 59.717 50.000 4.30 0.00 37.01 3.71
276 277 2.271800 AGCGAATTTAGCAGTTCTCCG 58.728 47.619 4.30 0.00 37.01 4.63
277 278 1.327764 GCGAATTTAGCAGTTCTCCGG 59.672 52.381 0.00 0.00 34.19 5.14
278 279 2.618053 CGAATTTAGCAGTTCTCCGGT 58.382 47.619 0.00 0.00 0.00 5.28
279 280 2.348666 CGAATTTAGCAGTTCTCCGGTG 59.651 50.000 0.00 0.00 0.00 4.94
280 281 2.403252 ATTTAGCAGTTCTCCGGTGG 57.597 50.000 0.00 0.00 0.00 4.61
281 282 0.321298 TTTAGCAGTTCTCCGGTGGC 60.321 55.000 0.00 0.00 0.00 5.01
282 283 1.476845 TTAGCAGTTCTCCGGTGGCA 61.477 55.000 0.00 0.00 0.00 4.92
283 284 1.476845 TAGCAGTTCTCCGGTGGCAA 61.477 55.000 0.00 0.00 0.00 4.52
284 285 2.328099 GCAGTTCTCCGGTGGCAAG 61.328 63.158 0.00 0.00 0.00 4.01
285 286 1.371183 CAGTTCTCCGGTGGCAAGA 59.629 57.895 0.00 0.00 0.00 3.02
286 287 0.671781 CAGTTCTCCGGTGGCAAGAG 60.672 60.000 0.00 0.00 0.00 2.85
287 288 0.832135 AGTTCTCCGGTGGCAAGAGA 60.832 55.000 0.00 8.59 34.90 3.10
288 289 0.390472 GTTCTCCGGTGGCAAGAGAG 60.390 60.000 0.00 7.63 37.90 3.20
289 290 0.541998 TTCTCCGGTGGCAAGAGAGA 60.542 55.000 0.00 9.52 37.90 3.10
290 291 0.541998 TCTCCGGTGGCAAGAGAGAA 60.542 55.000 0.00 0.00 32.92 2.87
291 292 0.108424 CTCCGGTGGCAAGAGAGAAG 60.108 60.000 0.00 0.00 0.00 2.85
292 293 0.541998 TCCGGTGGCAAGAGAGAAGA 60.542 55.000 0.00 0.00 0.00 2.87
293 294 0.108424 CCGGTGGCAAGAGAGAAGAG 60.108 60.000 0.00 0.00 0.00 2.85
294 295 0.108424 CGGTGGCAAGAGAGAAGAGG 60.108 60.000 0.00 0.00 0.00 3.69
295 296 0.392327 GGTGGCAAGAGAGAAGAGGC 60.392 60.000 0.00 0.00 0.00 4.70
296 297 0.739112 GTGGCAAGAGAGAAGAGGCG 60.739 60.000 0.00 0.00 0.00 5.52
297 298 1.153469 GGCAAGAGAGAAGAGGCGG 60.153 63.158 0.00 0.00 0.00 6.13
298 299 1.594310 GCAAGAGAGAAGAGGCGGT 59.406 57.895 0.00 0.00 0.00 5.68
299 300 0.036858 GCAAGAGAGAAGAGGCGGTT 60.037 55.000 0.00 0.00 0.00 4.44
300 301 2.003196 CAAGAGAGAAGAGGCGGTTC 57.997 55.000 0.00 0.00 0.00 3.62
301 302 0.899019 AAGAGAGAAGAGGCGGTTCC 59.101 55.000 0.00 0.00 0.00 3.62
302 303 0.251832 AGAGAGAAGAGGCGGTTCCA 60.252 55.000 0.00 0.00 37.29 3.53
303 304 0.174617 GAGAGAAGAGGCGGTTCCAG 59.825 60.000 0.00 0.00 37.29 3.86
304 305 0.251832 AGAGAAGAGGCGGTTCCAGA 60.252 55.000 0.00 0.00 37.29 3.86
305 306 0.608640 GAGAAGAGGCGGTTCCAGAA 59.391 55.000 0.00 0.00 37.29 3.02
306 307 1.208293 GAGAAGAGGCGGTTCCAGAAT 59.792 52.381 0.00 0.00 37.29 2.40
307 308 1.630878 AGAAGAGGCGGTTCCAGAATT 59.369 47.619 0.00 0.00 37.29 2.17
308 309 1.740025 GAAGAGGCGGTTCCAGAATTG 59.260 52.381 0.00 0.00 37.29 2.32
309 310 0.678048 AGAGGCGGTTCCAGAATTGC 60.678 55.000 0.00 0.00 37.29 3.56
310 311 0.960364 GAGGCGGTTCCAGAATTGCA 60.960 55.000 8.46 0.00 37.29 4.08
311 312 0.962356 AGGCGGTTCCAGAATTGCAG 60.962 55.000 8.46 0.00 37.29 4.41
312 313 1.244019 GGCGGTTCCAGAATTGCAGT 61.244 55.000 8.46 0.00 34.01 4.40
313 314 0.109597 GCGGTTCCAGAATTGCAGTG 60.110 55.000 0.00 0.00 0.00 3.66
314 315 0.109597 CGGTTCCAGAATTGCAGTGC 60.110 55.000 8.58 8.58 0.00 4.40
315 316 1.251251 GGTTCCAGAATTGCAGTGCT 58.749 50.000 17.60 0.00 0.00 4.40
316 317 1.200948 GGTTCCAGAATTGCAGTGCTC 59.799 52.381 17.60 5.66 0.00 4.26
317 318 1.135859 GTTCCAGAATTGCAGTGCTCG 60.136 52.381 17.60 2.71 0.00 5.03
318 319 0.035317 TCCAGAATTGCAGTGCTCGT 59.965 50.000 17.60 0.20 0.00 4.18
319 320 0.167470 CCAGAATTGCAGTGCTCGTG 59.833 55.000 17.60 6.61 0.00 4.35
320 321 0.870393 CAGAATTGCAGTGCTCGTGT 59.130 50.000 17.60 0.00 0.00 4.49
321 322 0.870393 AGAATTGCAGTGCTCGTGTG 59.130 50.000 17.60 0.00 0.00 3.82
322 323 0.110056 GAATTGCAGTGCTCGTGTGG 60.110 55.000 17.60 0.00 0.00 4.17
323 324 1.518056 AATTGCAGTGCTCGTGTGGG 61.518 55.000 17.60 0.00 0.00 4.61
324 325 4.624364 TGCAGTGCTCGTGTGGGG 62.624 66.667 17.60 0.00 0.00 4.96
325 326 4.314440 GCAGTGCTCGTGTGGGGA 62.314 66.667 8.18 0.00 0.00 4.81
326 327 2.425592 CAGTGCTCGTGTGGGGAA 59.574 61.111 0.00 0.00 0.00 3.97
327 328 1.669115 CAGTGCTCGTGTGGGGAAG 60.669 63.158 0.00 0.00 0.00 3.46
328 329 1.837051 AGTGCTCGTGTGGGGAAGA 60.837 57.895 0.00 0.00 0.00 2.87
329 330 1.374758 GTGCTCGTGTGGGGAAGAG 60.375 63.158 0.00 0.00 0.00 2.85
330 331 1.533033 TGCTCGTGTGGGGAAGAGA 60.533 57.895 0.00 0.00 32.84 3.10
331 332 1.079750 GCTCGTGTGGGGAAGAGAC 60.080 63.158 0.00 0.00 32.84 3.36
332 333 1.213013 CTCGTGTGGGGAAGAGACG 59.787 63.158 0.00 0.00 32.84 4.18
333 334 1.228337 TCGTGTGGGGAAGAGACGA 60.228 57.895 0.00 0.00 36.75 4.20
334 335 1.080705 CGTGTGGGGAAGAGACGAC 60.081 63.158 0.00 0.00 31.71 4.34
335 336 1.524863 CGTGTGGGGAAGAGACGACT 61.525 60.000 0.00 0.00 31.71 4.18
336 337 0.038159 GTGTGGGGAAGAGACGACTG 60.038 60.000 0.00 0.00 0.00 3.51
337 338 1.185618 TGTGGGGAAGAGACGACTGG 61.186 60.000 0.00 0.00 0.00 4.00
338 339 2.283529 TGGGGAAGAGACGACTGGC 61.284 63.158 0.00 0.00 0.00 4.85
340 341 2.341101 GGGAAGAGACGACTGGCGA 61.341 63.158 11.23 0.00 44.57 5.54
341 342 1.137825 GGAAGAGACGACTGGCGAG 59.862 63.158 11.23 0.00 44.57 5.03
342 343 1.137825 GAAGAGACGACTGGCGAGG 59.862 63.158 11.23 0.00 44.57 4.63
343 344 2.272918 GAAGAGACGACTGGCGAGGG 62.273 65.000 11.23 0.00 44.57 4.30
344 345 3.063084 GAGACGACTGGCGAGGGT 61.063 66.667 11.23 0.00 44.57 4.34
345 346 3.343788 GAGACGACTGGCGAGGGTG 62.344 68.421 11.23 0.00 44.57 4.61
346 347 3.681835 GACGACTGGCGAGGGTGT 61.682 66.667 11.23 0.00 44.57 4.16
347 348 3.222354 GACGACTGGCGAGGGTGTT 62.222 63.158 11.23 0.00 44.57 3.32
348 349 2.738521 CGACTGGCGAGGGTGTTG 60.739 66.667 0.00 0.00 44.57 3.33
349 350 3.050275 GACTGGCGAGGGTGTTGC 61.050 66.667 0.00 0.00 34.28 4.17
350 351 4.988598 ACTGGCGAGGGTGTTGCG 62.989 66.667 0.00 0.00 36.22 4.85
351 352 4.988598 CTGGCGAGGGTGTTGCGT 62.989 66.667 0.00 0.00 36.22 5.24
373 374 2.492090 CGAGAACCCGCTGGAGAG 59.508 66.667 0.00 0.00 34.81 3.20
374 375 2.344203 CGAGAACCCGCTGGAGAGT 61.344 63.158 0.00 0.00 34.81 3.24
375 376 1.878656 CGAGAACCCGCTGGAGAGTT 61.879 60.000 0.00 0.00 34.81 3.01
376 377 1.183549 GAGAACCCGCTGGAGAGTTA 58.816 55.000 0.00 0.00 34.81 2.24
377 378 0.896226 AGAACCCGCTGGAGAGTTAC 59.104 55.000 0.00 0.00 34.81 2.50
378 379 0.108281 GAACCCGCTGGAGAGTTACC 60.108 60.000 0.00 0.00 34.81 2.85
379 380 0.544595 AACCCGCTGGAGAGTTACCT 60.545 55.000 0.00 0.00 34.81 3.08
380 381 1.258445 ACCCGCTGGAGAGTTACCTG 61.258 60.000 0.00 0.00 34.81 4.00
381 382 1.153549 CCGCTGGAGAGTTACCTGC 60.154 63.158 0.00 0.00 44.81 4.85
382 383 1.153549 CGCTGGAGAGTTACCTGCC 60.154 63.158 0.00 0.00 45.24 4.85
383 384 1.608717 CGCTGGAGAGTTACCTGCCT 61.609 60.000 0.00 0.00 45.24 4.75
384 385 0.615850 GCTGGAGAGTTACCTGCCTT 59.384 55.000 0.00 0.00 43.32 4.35
385 386 1.831736 GCTGGAGAGTTACCTGCCTTA 59.168 52.381 0.00 0.00 43.32 2.69
386 387 2.236395 GCTGGAGAGTTACCTGCCTTAA 59.764 50.000 0.00 0.00 43.32 1.85
387 388 3.118223 GCTGGAGAGTTACCTGCCTTAAT 60.118 47.826 0.00 0.00 43.32 1.40
388 389 4.446371 CTGGAGAGTTACCTGCCTTAATG 58.554 47.826 0.00 0.00 0.00 1.90
389 390 3.199946 TGGAGAGTTACCTGCCTTAATGG 59.800 47.826 0.00 0.00 39.35 3.16
390 391 3.433740 GGAGAGTTACCTGCCTTAATGGG 60.434 52.174 0.00 0.00 36.00 4.00
402 403 4.779993 CCTTAATGGGCTAGAAAGGAGT 57.220 45.455 7.92 0.00 39.26 3.85
403 404 4.455606 CCTTAATGGGCTAGAAAGGAGTG 58.544 47.826 7.92 0.00 39.26 3.51
404 405 4.455606 CTTAATGGGCTAGAAAGGAGTGG 58.544 47.826 0.00 0.00 0.00 4.00
405 406 1.972588 ATGGGCTAGAAAGGAGTGGT 58.027 50.000 0.00 0.00 0.00 4.16
406 407 2.634639 TGGGCTAGAAAGGAGTGGTA 57.365 50.000 0.00 0.00 0.00 3.25
407 408 2.467880 TGGGCTAGAAAGGAGTGGTAG 58.532 52.381 0.00 0.00 0.00 3.18
408 409 1.763545 GGGCTAGAAAGGAGTGGTAGG 59.236 57.143 0.00 0.00 0.00 3.18
409 410 1.763545 GGCTAGAAAGGAGTGGTAGGG 59.236 57.143 0.00 0.00 0.00 3.53
410 411 2.468915 GCTAGAAAGGAGTGGTAGGGT 58.531 52.381 0.00 0.00 0.00 4.34
411 412 2.168728 GCTAGAAAGGAGTGGTAGGGTG 59.831 54.545 0.00 0.00 0.00 4.61
412 413 1.657804 AGAAAGGAGTGGTAGGGTGG 58.342 55.000 0.00 0.00 0.00 4.61
413 414 0.035343 GAAAGGAGTGGTAGGGTGGC 60.035 60.000 0.00 0.00 0.00 5.01
414 415 1.498176 AAAGGAGTGGTAGGGTGGCC 61.498 60.000 0.00 0.00 0.00 5.36
415 416 3.408853 GGAGTGGTAGGGTGGCCC 61.409 72.222 0.00 0.00 45.90 5.80
433 434 4.740822 GTTCCCATGCGGCCCAGT 62.741 66.667 0.00 0.00 0.00 4.00
434 435 3.012119 TTCCCATGCGGCCCAGTA 61.012 61.111 0.00 0.00 0.00 2.74
435 436 2.382770 TTCCCATGCGGCCCAGTAT 61.383 57.895 0.00 0.00 0.00 2.12
436 437 1.057275 TTCCCATGCGGCCCAGTATA 61.057 55.000 0.00 0.00 0.00 1.47
437 438 0.840288 TCCCATGCGGCCCAGTATAT 60.840 55.000 0.00 0.00 0.00 0.86
438 439 0.392998 CCCATGCGGCCCAGTATATC 60.393 60.000 0.00 0.00 0.00 1.63
439 440 0.740868 CCATGCGGCCCAGTATATCG 60.741 60.000 0.00 0.00 0.00 2.92
440 441 0.246360 CATGCGGCCCAGTATATCGA 59.754 55.000 0.00 0.00 0.00 3.59
441 442 0.973632 ATGCGGCCCAGTATATCGAA 59.026 50.000 0.00 0.00 0.00 3.71
442 443 0.973632 TGCGGCCCAGTATATCGAAT 59.026 50.000 0.00 0.00 0.00 3.34
443 444 1.337728 TGCGGCCCAGTATATCGAATG 60.338 52.381 0.00 0.00 0.00 2.67
444 445 1.359848 CGGCCCAGTATATCGAATGC 58.640 55.000 0.00 0.00 0.00 3.56
445 446 1.739067 GGCCCAGTATATCGAATGCC 58.261 55.000 0.00 0.00 0.00 4.40
446 447 1.359848 GCCCAGTATATCGAATGCCG 58.640 55.000 0.00 0.00 40.25 5.69
447 448 1.337823 GCCCAGTATATCGAATGCCGT 60.338 52.381 0.00 0.00 39.75 5.68
448 449 2.870435 GCCCAGTATATCGAATGCCGTT 60.870 50.000 0.00 0.00 39.75 4.44
449 450 3.615592 GCCCAGTATATCGAATGCCGTTA 60.616 47.826 0.00 0.00 39.75 3.18
450 451 3.924686 CCCAGTATATCGAATGCCGTTAC 59.075 47.826 0.00 0.00 39.75 2.50
451 452 3.924686 CCAGTATATCGAATGCCGTTACC 59.075 47.826 0.00 0.00 39.75 2.85
452 453 4.552355 CAGTATATCGAATGCCGTTACCA 58.448 43.478 0.00 0.00 39.75 3.25
453 454 4.384846 CAGTATATCGAATGCCGTTACCAC 59.615 45.833 0.00 0.00 39.75 4.16
454 455 3.746045 ATATCGAATGCCGTTACCACT 57.254 42.857 0.00 0.00 39.75 4.00
455 456 1.935933 ATCGAATGCCGTTACCACTC 58.064 50.000 0.00 0.00 39.75 3.51
456 457 0.892755 TCGAATGCCGTTACCACTCT 59.107 50.000 0.00 0.00 39.75 3.24
457 458 0.999406 CGAATGCCGTTACCACTCTG 59.001 55.000 0.00 0.00 0.00 3.35
458 459 0.727398 GAATGCCGTTACCACTCTGC 59.273 55.000 0.00 0.00 0.00 4.26
459 460 0.324943 AATGCCGTTACCACTCTGCT 59.675 50.000 0.00 0.00 0.00 4.24
460 461 0.391661 ATGCCGTTACCACTCTGCTG 60.392 55.000 0.00 0.00 0.00 4.41
461 462 1.741770 GCCGTTACCACTCTGCTGG 60.742 63.158 0.00 0.00 37.33 4.85
462 463 1.972198 CCGTTACCACTCTGCTGGA 59.028 57.895 0.00 0.00 35.04 3.86
463 464 0.320374 CCGTTACCACTCTGCTGGAA 59.680 55.000 0.00 0.00 35.04 3.53
464 465 1.270625 CCGTTACCACTCTGCTGGAAA 60.271 52.381 0.00 0.00 35.04 3.13
465 466 2.489971 CGTTACCACTCTGCTGGAAAA 58.510 47.619 0.00 0.00 35.04 2.29
466 467 2.875933 CGTTACCACTCTGCTGGAAAAA 59.124 45.455 0.00 0.00 35.04 1.94
496 497 3.653344 GAAACCATCCAAAGAAACTGGC 58.347 45.455 0.00 0.00 33.63 4.85
497 498 2.380064 ACCATCCAAAGAAACTGGCA 57.620 45.000 0.00 0.00 33.63 4.92
498 499 2.676748 ACCATCCAAAGAAACTGGCAA 58.323 42.857 0.00 0.00 33.63 4.52
499 500 2.365293 ACCATCCAAAGAAACTGGCAAC 59.635 45.455 0.00 0.00 33.63 4.17
500 501 2.629617 CCATCCAAAGAAACTGGCAACT 59.370 45.455 0.00 0.00 33.63 3.16
501 502 3.305608 CCATCCAAAGAAACTGGCAACTC 60.306 47.826 0.00 0.00 33.63 3.01
502 503 3.011566 TCCAAAGAAACTGGCAACTCA 57.988 42.857 0.00 0.00 33.63 3.41
503 504 3.360867 TCCAAAGAAACTGGCAACTCAA 58.639 40.909 0.00 0.00 33.63 3.02
504 505 3.766591 TCCAAAGAAACTGGCAACTCAAA 59.233 39.130 0.00 0.00 33.63 2.69
505 506 4.221703 TCCAAAGAAACTGGCAACTCAAAA 59.778 37.500 0.00 0.00 33.63 2.44
506 507 4.934602 CCAAAGAAACTGGCAACTCAAAAA 59.065 37.500 0.00 0.00 37.61 1.94
662 663 0.661020 AAAGGTTGAGGTTTGCGTCG 59.339 50.000 0.00 0.00 32.59 5.12
796 797 2.676121 CCGGCCCACAAATGCTCA 60.676 61.111 0.00 0.00 0.00 4.26
803 807 2.875672 GCCCACAAATGCTCAGTCAGTA 60.876 50.000 0.00 0.00 0.00 2.74
815 819 3.845178 TCAGTCAGTAACCAATACGCAG 58.155 45.455 0.00 0.00 39.62 5.18
835 846 1.809651 GCCTGGTCTGCTAGCTGATTC 60.810 57.143 24.77 19.60 0.00 2.52
836 847 1.761784 CCTGGTCTGCTAGCTGATTCT 59.238 52.381 24.77 0.00 0.00 2.40
837 848 2.483363 CCTGGTCTGCTAGCTGATTCTG 60.483 54.545 24.77 20.75 0.00 3.02
838 849 2.429971 CTGGTCTGCTAGCTGATTCTGA 59.570 50.000 24.77 8.60 0.00 3.27
839 850 2.167281 TGGTCTGCTAGCTGATTCTGAC 59.833 50.000 24.77 12.67 0.00 3.51
869 880 2.437359 GCAAGCCACTGCCGATCT 60.437 61.111 0.00 0.00 38.69 2.75
918 941 1.074547 TGCCTGCCATAGCCTCCTA 60.075 57.895 0.00 0.00 38.69 2.94
919 942 1.123861 TGCCTGCCATAGCCTCCTAG 61.124 60.000 0.00 0.00 38.69 3.02
920 943 1.676384 CCTGCCATAGCCTCCTAGC 59.324 63.158 0.00 0.00 38.69 3.42
951 974 8.140677 TCTTCTCTTATCTACTTGTAGTACGC 57.859 38.462 7.56 0.00 0.00 4.42
1091 1141 1.643868 TTGATCCATTCGTGCGGTGC 61.644 55.000 0.00 0.00 0.00 5.01
1092 1142 2.046411 ATCCATTCGTGCGGTGCA 60.046 55.556 0.00 0.00 35.60 4.57
1093 1143 2.040213 GATCCATTCGTGCGGTGCAG 62.040 60.000 0.00 0.00 40.08 4.41
1094 1144 3.803082 CCATTCGTGCGGTGCAGG 61.803 66.667 5.19 5.19 44.42 4.85
1095 1145 4.465512 CATTCGTGCGGTGCAGGC 62.466 66.667 6.61 2.77 43.03 4.85
1096 1146 4.704833 ATTCGTGCGGTGCAGGCT 62.705 61.111 10.67 0.00 43.03 4.58
1097 1147 4.927782 TTCGTGCGGTGCAGGCTT 62.928 61.111 10.67 0.00 43.03 4.35
1102 1152 4.742201 GCGGTGCAGGCTTCGAGA 62.742 66.667 10.02 0.00 0.00 4.04
1103 1153 2.507992 CGGTGCAGGCTTCGAGAG 60.508 66.667 0.00 0.00 0.00 3.20
1104 1154 2.973899 GGTGCAGGCTTCGAGAGA 59.026 61.111 0.00 0.00 39.20 3.10
1105 1155 1.446966 GGTGCAGGCTTCGAGAGAC 60.447 63.158 0.00 0.00 41.84 3.36
1106 1156 1.290324 GTGCAGGCTTCGAGAGACA 59.710 57.895 0.00 0.00 41.84 3.41
1107 1157 0.108424 GTGCAGGCTTCGAGAGACAT 60.108 55.000 0.00 0.00 41.84 3.06
1108 1158 0.108472 TGCAGGCTTCGAGAGACATG 60.108 55.000 0.00 0.00 41.84 3.21
1109 1159 1.427592 GCAGGCTTCGAGAGACATGC 61.428 60.000 0.00 7.61 41.84 4.06
1110 1160 0.108472 CAGGCTTCGAGAGACATGCA 60.108 55.000 0.00 0.00 41.84 3.96
1111 1161 0.108424 AGGCTTCGAGAGACATGCAC 60.108 55.000 0.00 0.00 41.84 4.57
1112 1162 0.390340 GGCTTCGAGAGACATGCACA 60.390 55.000 0.00 0.00 41.84 4.57
1113 1163 0.997932 GCTTCGAGAGACATGCACAG 59.002 55.000 0.00 0.00 41.84 3.66
1114 1164 1.638133 CTTCGAGAGACATGCACAGG 58.362 55.000 0.00 0.00 41.84 4.00
1115 1165 0.247460 TTCGAGAGACATGCACAGGG 59.753 55.000 0.00 0.00 41.84 4.45
1116 1166 0.900182 TCGAGAGACATGCACAGGGT 60.900 55.000 0.00 0.00 33.31 4.34
1117 1167 0.738762 CGAGAGACATGCACAGGGTG 60.739 60.000 0.00 0.00 36.51 4.61
1123 1173 0.107831 ACATGCACAGGGTGTAACGT 59.892 50.000 0.00 0.00 38.12 3.99
1269 1319 4.003648 CCCTCATGGTTTACAAGTGAGAC 58.996 47.826 2.49 0.00 38.81 3.36
1275 1325 5.670792 TGGTTTACAAGTGAGACGGATAT 57.329 39.130 0.00 0.00 0.00 1.63
1276 1326 6.778834 TGGTTTACAAGTGAGACGGATATA 57.221 37.500 0.00 0.00 0.00 0.86
1277 1327 7.356089 TGGTTTACAAGTGAGACGGATATAT 57.644 36.000 0.00 0.00 0.00 0.86
1278 1328 7.431249 TGGTTTACAAGTGAGACGGATATATC 58.569 38.462 3.96 3.96 0.00 1.63
1279 1329 6.867293 GGTTTACAAGTGAGACGGATATATCC 59.133 42.308 20.32 20.32 43.65 2.59
1294 1344 6.218746 GGATATATCCCGTTCGTGTTTTAGT 58.781 40.000 19.69 0.00 41.20 2.24
1298 1348 3.500982 TCCCGTTCGTGTTTTAGTATCG 58.499 45.455 0.00 0.00 0.00 2.92
1299 1349 3.190327 TCCCGTTCGTGTTTTAGTATCGA 59.810 43.478 0.00 0.00 0.00 3.59
1300 1350 4.107622 CCCGTTCGTGTTTTAGTATCGAT 58.892 43.478 2.16 2.16 0.00 3.59
1301 1351 5.065859 TCCCGTTCGTGTTTTAGTATCGATA 59.934 40.000 0.00 0.00 0.00 2.92
1302 1352 5.916883 CCCGTTCGTGTTTTAGTATCGATAT 59.083 40.000 8.66 0.87 0.00 1.63
1303 1353 6.087291 CCCGTTCGTGTTTTAGTATCGATATC 59.913 42.308 8.66 2.87 0.00 1.63
1304 1354 6.183359 CCGTTCGTGTTTTAGTATCGATATCG 60.183 42.308 19.14 19.14 41.45 2.92
1328 1378 1.762370 TCTTTCGCCTCATGCATCCTA 59.238 47.619 0.00 0.00 41.33 2.94
1330 1380 2.462456 TTCGCCTCATGCATCCTATC 57.538 50.000 0.00 0.00 41.33 2.08
1343 1393 3.827302 GCATCCTATCCTCTCGTTTCCTA 59.173 47.826 0.00 0.00 0.00 2.94
1349 1400 6.715718 TCCTATCCTCTCGTTTCCTACTAATG 59.284 42.308 0.00 0.00 0.00 1.90
1378 1429 2.225791 CTGATCCGTCTCGTTGGGCA 62.226 60.000 0.00 0.00 0.00 5.36
1543 1598 7.564660 TCAGCTATGGGAATGATTTGGTTTTAT 59.435 33.333 0.00 0.00 0.00 1.40
1738 1793 2.683933 AGGATGAGGGACGCGGTT 60.684 61.111 12.47 0.00 0.00 4.44
1829 1884 0.106519 AGGCAAGCAGTGAACACCTT 60.107 50.000 0.00 0.00 0.00 3.50
1832 1887 2.558359 GGCAAGCAGTGAACACCTTAAT 59.442 45.455 0.00 0.00 0.00 1.40
1833 1888 3.005791 GGCAAGCAGTGAACACCTTAATT 59.994 43.478 0.00 0.00 0.00 1.40
1843 1898 1.024579 CACCTTAATTGGTCGCCGCT 61.025 55.000 0.00 0.00 38.45 5.52
1857 1913 1.343506 GCCGCTTTGCTTTTCTGATG 58.656 50.000 0.00 0.00 0.00 3.07
1860 1916 3.611530 GCCGCTTTGCTTTTCTGATGTAA 60.612 43.478 0.00 0.00 0.00 2.41
1864 1920 5.340667 CGCTTTGCTTTTCTGATGTAAAGAC 59.659 40.000 14.96 8.86 37.32 3.01
1865 1921 6.208644 GCTTTGCTTTTCTGATGTAAAGACA 58.791 36.000 14.96 6.83 37.32 3.41
1866 1922 6.361748 GCTTTGCTTTTCTGATGTAAAGACAG 59.638 38.462 14.96 0.00 39.50 3.51
1875 1931 1.890876 TGTAAAGACAGGCAATGCGT 58.109 45.000 0.00 0.00 0.00 5.24
1880 1936 0.321919 AGACAGGCAATGCGTGATGT 60.322 50.000 30.86 17.37 45.68 3.06
1882 1938 1.515519 CAGGCAATGCGTGATGTGC 60.516 57.895 21.73 0.00 45.68 4.57
1883 1939 1.676635 AGGCAATGCGTGATGTGCT 60.677 52.632 0.00 0.00 37.17 4.40
1884 1940 1.213537 GGCAATGCGTGATGTGCTT 59.786 52.632 0.00 0.00 37.17 3.91
1886 1942 1.135431 GGCAATGCGTGATGTGCTTAA 60.135 47.619 0.00 0.00 37.17 1.85
1892 1960 3.073678 TGCGTGATGTGCTTAAGATGTT 58.926 40.909 6.67 0.00 0.00 2.71
1900 1968 5.437289 TGTGCTTAAGATGTTCACCTTTG 57.563 39.130 6.67 0.00 0.00 2.77
1909 1977 5.846203 AGATGTTCACCTTTGTTGGAAATG 58.154 37.500 0.00 0.00 0.00 2.32
1915 1989 6.325919 TCACCTTTGTTGGAAATGTGTATC 57.674 37.500 0.00 0.00 30.96 2.24
1916 1990 5.830457 TCACCTTTGTTGGAAATGTGTATCA 59.170 36.000 0.00 0.00 30.96 2.15
1917 1991 6.493115 TCACCTTTGTTGGAAATGTGTATCAT 59.507 34.615 0.00 0.00 38.57 2.45
1918 1992 6.808212 CACCTTTGTTGGAAATGTGTATCATC 59.192 38.462 0.00 0.00 35.48 2.92
2055 2130 5.130292 AGAATTTCAGTGTTCCTGCATTG 57.870 39.130 0.00 0.00 41.25 2.82
2060 2135 2.106338 TCAGTGTTCCTGCATTGGAAGA 59.894 45.455 7.64 4.19 45.62 2.87
2097 2684 9.012954 AGTACTCCTACTACTTAATACTCCCTT 57.987 37.037 0.00 0.00 30.81 3.95
2101 2688 8.530804 TCCTACTACTTAATACTCCCTTTGTC 57.469 38.462 0.00 0.00 0.00 3.18
2119 2719 3.194861 TGTCTCTTTTCACTCCGTGTTG 58.805 45.455 0.00 0.00 34.79 3.33
2131 2731 3.823281 TCCGTGTTGGAAGTCAAACTA 57.177 42.857 0.47 0.00 46.38 2.24
2132 2732 4.139859 TCCGTGTTGGAAGTCAAACTAA 57.860 40.909 0.47 0.00 46.38 2.24
2133 2733 4.515361 TCCGTGTTGGAAGTCAAACTAAA 58.485 39.130 0.47 0.00 46.38 1.85
2134 2734 4.333372 TCCGTGTTGGAAGTCAAACTAAAC 59.667 41.667 0.47 0.00 46.38 2.01
2136 2736 5.025826 CGTGTTGGAAGTCAAACTAAACAC 58.974 41.667 15.96 15.96 40.24 3.32
2137 2737 5.163794 CGTGTTGGAAGTCAAACTAAACACT 60.164 40.000 19.78 0.00 40.80 3.55
2138 2738 6.036300 CGTGTTGGAAGTCAAACTAAACACTA 59.964 38.462 19.78 0.00 40.80 2.74
2140 2740 9.048446 GTGTTGGAAGTCAAACTAAACACTATA 57.952 33.333 17.38 0.00 40.35 1.31
2220 2822 9.926158 AATATGAACATTAATTTTCACAGTGCA 57.074 25.926 17.09 1.67 34.61 4.57
2222 2824 7.872163 TGAACATTAATTTTCACAGTGCATC 57.128 32.000 12.03 0.00 0.00 3.91
2227 2832 9.357652 ACATTAATTTTCACAGTGCATCAATAC 57.642 29.630 0.00 0.00 0.00 1.89
2287 2893 5.729974 AACTGGTCAAACTTTACGAAGTC 57.270 39.130 0.00 0.00 45.18 3.01
2288 2894 3.800506 ACTGGTCAAACTTTACGAAGTCG 59.199 43.478 0.00 0.00 45.18 4.18
2342 3076 8.414629 ACGAAGGGGGTAACTAGTTAATATAG 57.585 38.462 16.82 6.89 0.00 1.31
2439 3175 6.477033 AGCTCGTTCACATTCTTGTCATATAC 59.523 38.462 0.00 0.00 32.34 1.47
2443 3179 7.008901 TCGTTCACATTCTTGTCATATACGAAC 59.991 37.037 0.00 0.00 32.34 3.95
2448 3184 7.841277 CACATTCTTGTCATATACGAACGAAAG 59.159 37.037 0.14 0.00 32.34 2.62
2461 3205 2.381725 ACGAAAGTAGGCTTAGCCAC 57.618 50.000 26.26 19.66 46.82 5.01
2672 3418 3.461061 AGTACTTGATGATGTGGATGCG 58.539 45.455 0.00 0.00 0.00 4.73
2677 3423 3.097877 TGATGATGTGGATGCGTAGAC 57.902 47.619 0.00 0.00 0.00 2.59
2688 3434 2.568912 GCGTAGACGACATGCGAGC 61.569 63.158 14.88 7.49 44.57 5.03
2715 3461 7.391275 TGAGATGTGTGCATTTTGAGAGAAATA 59.609 33.333 0.00 0.00 35.07 1.40
2748 3494 8.902540 TGGGATCAACTATTTATGTGTACATC 57.097 34.615 0.00 0.00 37.76 3.06
2810 6467 0.038251 CGGCAGCTTAGACAGTGTGA 60.038 55.000 0.00 0.00 0.00 3.58
2816 6473 2.738846 AGCTTAGACAGTGTGATTTGCG 59.261 45.455 0.00 0.00 0.00 4.85
2819 6476 4.702392 CTTAGACAGTGTGATTTGCGAAC 58.298 43.478 0.00 0.00 0.00 3.95
2820 6477 2.560504 AGACAGTGTGATTTGCGAACA 58.439 42.857 0.00 0.00 0.00 3.18
2822 6479 3.565482 AGACAGTGTGATTTGCGAACAAT 59.435 39.130 0.00 0.00 35.21 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.108976 GGCGCCGGATGAGAATGA 59.891 61.111 12.58 0.00 0.00 2.57
1 2 3.341043 CGGCGCCGGATGAGAATG 61.341 66.667 40.50 8.79 35.56 2.67
14 15 3.982372 TTCTACTGAAGCGCCGGCG 62.982 63.158 43.13 43.13 46.35 6.46
15 16 1.740296 TTTCTACTGAAGCGCCGGC 60.740 57.895 19.07 19.07 40.37 6.13
16 17 1.683790 CGTTTCTACTGAAGCGCCGG 61.684 60.000 2.29 0.00 46.31 6.13
17 18 1.702299 CGTTTCTACTGAAGCGCCG 59.298 57.895 2.29 0.00 46.31 6.46
21 22 3.987868 TCATGTGACGTTTCTACTGAAGC 59.012 43.478 0.00 0.00 33.28 3.86
22 23 6.712241 ATTCATGTGACGTTTCTACTGAAG 57.288 37.500 0.00 0.00 33.28 3.02
23 24 7.375834 ACTATTCATGTGACGTTTCTACTGAA 58.624 34.615 0.00 0.00 0.00 3.02
24 25 6.920817 ACTATTCATGTGACGTTTCTACTGA 58.079 36.000 0.00 0.00 0.00 3.41
25 26 8.683550 TTACTATTCATGTGACGTTTCTACTG 57.316 34.615 0.00 0.00 0.00 2.74
26 27 8.737175 TCTTACTATTCATGTGACGTTTCTACT 58.263 33.333 0.00 0.00 0.00 2.57
27 28 8.906636 TCTTACTATTCATGTGACGTTTCTAC 57.093 34.615 0.00 0.00 0.00 2.59
28 29 9.350357 GTTCTTACTATTCATGTGACGTTTCTA 57.650 33.333 0.00 0.00 0.00 2.10
29 30 7.870954 TGTTCTTACTATTCATGTGACGTTTCT 59.129 33.333 0.00 0.00 0.00 2.52
30 31 7.950496 GTGTTCTTACTATTCATGTGACGTTTC 59.050 37.037 0.00 0.00 0.00 2.78
31 32 7.439955 TGTGTTCTTACTATTCATGTGACGTTT 59.560 33.333 0.00 0.00 0.00 3.60
32 33 6.926826 TGTGTTCTTACTATTCATGTGACGTT 59.073 34.615 0.00 0.00 0.00 3.99
33 34 6.452242 TGTGTTCTTACTATTCATGTGACGT 58.548 36.000 0.00 0.00 0.00 4.34
34 35 6.806739 TCTGTGTTCTTACTATTCATGTGACG 59.193 38.462 0.00 0.00 0.00 4.35
35 36 8.709386 ATCTGTGTTCTTACTATTCATGTGAC 57.291 34.615 0.00 0.00 0.00 3.67
36 37 8.753133 AGATCTGTGTTCTTACTATTCATGTGA 58.247 33.333 0.00 0.00 0.00 3.58
37 38 8.939201 AGATCTGTGTTCTTACTATTCATGTG 57.061 34.615 0.00 0.00 0.00 3.21
38 39 9.593134 GAAGATCTGTGTTCTTACTATTCATGT 57.407 33.333 0.00 0.00 33.65 3.21
39 40 9.039870 GGAAGATCTGTGTTCTTACTATTCATG 57.960 37.037 0.00 0.00 33.65 3.07
40 41 8.207545 GGGAAGATCTGTGTTCTTACTATTCAT 58.792 37.037 0.00 0.00 34.91 2.57
41 42 7.556844 GGGAAGATCTGTGTTCTTACTATTCA 58.443 38.462 0.00 0.00 34.91 2.57
42 43 6.697892 CGGGAAGATCTGTGTTCTTACTATTC 59.302 42.308 0.00 0.00 34.91 1.75
43 44 6.574350 CGGGAAGATCTGTGTTCTTACTATT 58.426 40.000 0.00 0.00 34.91 1.73
44 45 5.452077 GCGGGAAGATCTGTGTTCTTACTAT 60.452 44.000 0.00 0.00 34.91 2.12
45 46 4.142227 GCGGGAAGATCTGTGTTCTTACTA 60.142 45.833 0.00 0.00 34.91 1.82
46 47 3.368531 GCGGGAAGATCTGTGTTCTTACT 60.369 47.826 0.00 0.00 34.91 2.24
47 48 2.930682 GCGGGAAGATCTGTGTTCTTAC 59.069 50.000 0.00 0.00 33.65 2.34
48 49 2.093658 GGCGGGAAGATCTGTGTTCTTA 60.094 50.000 0.00 0.00 33.65 2.10
49 50 1.339151 GGCGGGAAGATCTGTGTTCTT 60.339 52.381 0.00 0.00 36.16 2.52
50 51 0.250513 GGCGGGAAGATCTGTGTTCT 59.749 55.000 0.00 0.00 0.00 3.01
51 52 0.036388 TGGCGGGAAGATCTGTGTTC 60.036 55.000 0.00 0.00 0.00 3.18
52 53 0.400213 TTGGCGGGAAGATCTGTGTT 59.600 50.000 0.00 0.00 0.00 3.32
53 54 0.400213 TTTGGCGGGAAGATCTGTGT 59.600 50.000 0.00 0.00 0.00 3.72
54 55 1.533625 TTTTGGCGGGAAGATCTGTG 58.466 50.000 0.00 0.00 0.00 3.66
55 56 2.286365 TTTTTGGCGGGAAGATCTGT 57.714 45.000 0.00 0.00 0.00 3.41
84 85 9.503427 CGATCTGTGTTCTTACTTTTTCTTTTT 57.497 29.630 0.00 0.00 0.00 1.94
85 86 8.674607 ACGATCTGTGTTCTTACTTTTTCTTTT 58.325 29.630 0.00 0.00 0.00 2.27
86 87 8.122952 CACGATCTGTGTTCTTACTTTTTCTTT 58.877 33.333 8.84 0.00 43.88 2.52
87 88 7.630924 CACGATCTGTGTTCTTACTTTTTCTT 58.369 34.615 8.84 0.00 43.88 2.52
88 89 7.178712 CACGATCTGTGTTCTTACTTTTTCT 57.821 36.000 8.84 0.00 43.88 2.52
103 104 0.802222 CGCGGTTCATCACGATCTGT 60.802 55.000 0.00 0.00 0.00 3.41
104 105 1.920051 CGCGGTTCATCACGATCTG 59.080 57.895 0.00 0.00 0.00 2.90
105 106 1.878522 GCGCGGTTCATCACGATCT 60.879 57.895 8.83 0.00 0.00 2.75
106 107 2.621000 GCGCGGTTCATCACGATC 59.379 61.111 8.83 0.00 0.00 3.69
107 108 3.254654 CGCGCGGTTCATCACGAT 61.255 61.111 24.84 0.00 0.00 3.73
122 123 4.916293 TCCGATGCATGGAGGCGC 62.916 66.667 10.66 0.00 36.28 6.53
123 124 2.031616 ATCCGATGCATGGAGGCG 59.968 61.111 18.60 10.04 39.30 5.52
124 125 1.970114 CCATCCGATGCATGGAGGC 60.970 63.158 18.51 0.00 43.32 4.70
125 126 1.756665 TCCATCCGATGCATGGAGG 59.243 57.895 18.60 18.06 44.17 4.30
127 128 1.071228 CTTCTCCATCCGATGCATGGA 59.929 52.381 16.84 16.84 46.39 3.41
128 129 1.520494 CTTCTCCATCCGATGCATGG 58.480 55.000 2.46 1.62 42.16 3.66
129 130 0.873054 GCTTCTCCATCCGATGCATG 59.127 55.000 2.46 0.00 33.32 4.06
130 131 0.763652 AGCTTCTCCATCCGATGCAT 59.236 50.000 0.00 0.00 34.93 3.96
131 132 0.543277 AAGCTTCTCCATCCGATGCA 59.457 50.000 2.53 0.00 34.93 3.96
132 133 1.601430 GAAAGCTTCTCCATCCGATGC 59.399 52.381 0.00 0.00 33.28 3.91
133 134 3.191078 AGAAAGCTTCTCCATCCGATG 57.809 47.619 0.00 0.93 34.07 3.84
143 144 7.690256 TGGTAGGAAAAATAGAGAAAGCTTCT 58.310 34.615 0.00 0.00 44.21 2.85
144 145 7.923414 TGGTAGGAAAAATAGAGAAAGCTTC 57.077 36.000 0.00 0.00 0.00 3.86
145 146 8.706322 TTTGGTAGGAAAAATAGAGAAAGCTT 57.294 30.769 0.00 0.00 0.00 3.74
146 147 8.577296 GTTTTGGTAGGAAAAATAGAGAAAGCT 58.423 33.333 0.00 0.00 0.00 3.74
147 148 7.537649 CGTTTTGGTAGGAAAAATAGAGAAAGC 59.462 37.037 0.00 0.00 0.00 3.51
148 149 8.021396 CCGTTTTGGTAGGAAAAATAGAGAAAG 58.979 37.037 0.00 0.00 0.00 2.62
149 150 7.720515 TCCGTTTTGGTAGGAAAAATAGAGAAA 59.279 33.333 0.00 0.00 39.52 2.52
150 151 7.225725 TCCGTTTTGGTAGGAAAAATAGAGAA 58.774 34.615 0.00 0.00 39.52 2.87
151 152 6.771573 TCCGTTTTGGTAGGAAAAATAGAGA 58.228 36.000 0.00 0.00 39.52 3.10
152 153 6.877322 TCTCCGTTTTGGTAGGAAAAATAGAG 59.123 38.462 0.00 0.00 39.52 2.43
153 154 6.652062 GTCTCCGTTTTGGTAGGAAAAATAGA 59.348 38.462 0.00 0.00 39.52 1.98
154 155 6.401796 CGTCTCCGTTTTGGTAGGAAAAATAG 60.402 42.308 0.00 0.00 39.52 1.73
155 156 5.409214 CGTCTCCGTTTTGGTAGGAAAAATA 59.591 40.000 0.00 0.00 39.52 1.40
156 157 4.214758 CGTCTCCGTTTTGGTAGGAAAAAT 59.785 41.667 0.00 0.00 39.52 1.82
157 158 3.560896 CGTCTCCGTTTTGGTAGGAAAAA 59.439 43.478 0.00 0.00 39.52 1.94
158 159 3.132925 CGTCTCCGTTTTGGTAGGAAAA 58.867 45.455 0.00 0.00 39.52 2.29
159 160 2.548493 CCGTCTCCGTTTTGGTAGGAAA 60.548 50.000 0.00 0.00 39.52 3.13
160 161 1.001181 CCGTCTCCGTTTTGGTAGGAA 59.999 52.381 0.00 0.00 39.52 3.36
161 162 0.604578 CCGTCTCCGTTTTGGTAGGA 59.395 55.000 0.00 0.00 39.52 2.94
162 163 0.604578 TCCGTCTCCGTTTTGGTAGG 59.395 55.000 0.00 0.00 39.52 3.18
163 164 1.542915 TCTCCGTCTCCGTTTTGGTAG 59.457 52.381 0.00 0.00 39.52 3.18
164 165 1.542915 CTCTCCGTCTCCGTTTTGGTA 59.457 52.381 0.00 0.00 39.52 3.25
165 166 0.317479 CTCTCCGTCTCCGTTTTGGT 59.683 55.000 0.00 0.00 39.52 3.67
166 167 1.014564 GCTCTCCGTCTCCGTTTTGG 61.015 60.000 0.00 0.00 40.09 3.28
167 168 0.319555 TGCTCTCCGTCTCCGTTTTG 60.320 55.000 0.00 0.00 0.00 2.44
168 169 0.038159 CTGCTCTCCGTCTCCGTTTT 60.038 55.000 0.00 0.00 0.00 2.43
169 170 1.587054 CTGCTCTCCGTCTCCGTTT 59.413 57.895 0.00 0.00 0.00 3.60
170 171 2.344203 CCTGCTCTCCGTCTCCGTT 61.344 63.158 0.00 0.00 0.00 4.44
171 172 2.752238 CCTGCTCTCCGTCTCCGT 60.752 66.667 0.00 0.00 0.00 4.69
172 173 2.438614 TCCTGCTCTCCGTCTCCG 60.439 66.667 0.00 0.00 0.00 4.63
173 174 2.781158 GCTCCTGCTCTCCGTCTCC 61.781 68.421 0.00 0.00 36.03 3.71
174 175 2.804856 GCTCCTGCTCTCCGTCTC 59.195 66.667 0.00 0.00 36.03 3.36
175 176 3.137459 CGCTCCTGCTCTCCGTCT 61.137 66.667 0.00 0.00 36.97 4.18
176 177 2.701780 TTCGCTCCTGCTCTCCGTC 61.702 63.158 0.00 0.00 36.97 4.79
177 178 2.676822 TTCGCTCCTGCTCTCCGT 60.677 61.111 0.00 0.00 36.97 4.69
178 179 2.202676 GTTCGCTCCTGCTCTCCG 60.203 66.667 0.00 0.00 36.97 4.63
179 180 2.185608 GGTTCGCTCCTGCTCTCC 59.814 66.667 0.00 0.00 36.97 3.71
180 181 1.153667 CTGGTTCGCTCCTGCTCTC 60.154 63.158 0.00 0.00 36.97 3.20
181 182 2.654079 CCTGGTTCGCTCCTGCTCT 61.654 63.158 0.00 0.00 36.97 4.09
182 183 2.125350 CCTGGTTCGCTCCTGCTC 60.125 66.667 0.00 0.00 36.97 4.26
183 184 2.456287 GAACCTGGTTCGCTCCTGCT 62.456 60.000 22.67 0.00 32.81 4.24
184 185 2.032681 AACCTGGTTCGCTCCTGC 59.967 61.111 6.18 0.00 0.00 4.85
185 186 0.951040 GTGAACCTGGTTCGCTCCTG 60.951 60.000 34.51 0.00 45.87 3.86
186 187 1.371558 GTGAACCTGGTTCGCTCCT 59.628 57.895 34.51 5.28 45.87 3.69
187 188 2.027625 CGTGAACCTGGTTCGCTCC 61.028 63.158 36.41 22.35 46.77 4.70
188 189 2.027625 CCGTGAACCTGGTTCGCTC 61.028 63.158 36.41 25.42 46.77 5.03
189 190 2.030562 CCGTGAACCTGGTTCGCT 59.969 61.111 36.41 9.81 46.77 4.93
190 191 3.047877 CCCGTGAACCTGGTTCGC 61.048 66.667 33.00 33.00 44.55 4.70
191 192 1.374252 CTCCCGTGAACCTGGTTCG 60.374 63.158 28.92 20.70 44.55 3.95
192 193 1.003718 CCTCCCGTGAACCTGGTTC 60.004 63.158 28.50 28.50 42.26 3.62
193 194 1.460689 TCCTCCCGTGAACCTGGTT 60.461 57.895 12.82 12.82 0.00 3.67
194 195 2.203182 TCCTCCCGTGAACCTGGT 59.797 61.111 0.00 0.00 0.00 4.00
195 196 2.663196 GTCCTCCCGTGAACCTGG 59.337 66.667 0.00 0.00 0.00 4.45
196 197 2.261671 CGTCCTCCCGTGAACCTG 59.738 66.667 0.00 0.00 0.00 4.00
197 198 2.116772 TCGTCCTCCCGTGAACCT 59.883 61.111 0.00 0.00 0.00 3.50
198 199 2.260743 GTCGTCCTCCCGTGAACC 59.739 66.667 0.00 0.00 0.00 3.62
199 200 2.126580 CGTCGTCCTCCCGTGAAC 60.127 66.667 0.00 0.00 0.00 3.18
200 201 2.281692 TCGTCGTCCTCCCGTGAA 60.282 61.111 0.00 0.00 0.00 3.18
201 202 2.532465 ATCTCGTCGTCCTCCCGTGA 62.532 60.000 0.00 0.00 0.00 4.35
202 203 2.049475 GATCTCGTCGTCCTCCCGTG 62.049 65.000 0.00 0.00 0.00 4.94
203 204 1.818785 GATCTCGTCGTCCTCCCGT 60.819 63.158 0.00 0.00 0.00 5.28
204 205 2.883468 CGATCTCGTCGTCCTCCCG 61.883 68.421 0.00 0.00 45.19 5.14
205 206 3.023950 CGATCTCGTCGTCCTCCC 58.976 66.667 0.00 0.00 45.19 4.30
214 215 1.226046 CAAGCGACGTCGATCTCGT 60.226 57.895 39.74 17.53 44.27 4.18
215 216 2.560151 GCAAGCGACGTCGATCTCG 61.560 63.158 39.74 25.47 43.02 4.04
216 217 1.197368 GAGCAAGCGACGTCGATCTC 61.197 60.000 39.74 30.51 43.02 2.75
217 218 1.226435 GAGCAAGCGACGTCGATCT 60.226 57.895 39.74 27.62 43.02 2.75
218 219 2.224885 GGAGCAAGCGACGTCGATC 61.225 63.158 39.74 23.32 43.02 3.69
219 220 2.202623 GGAGCAAGCGACGTCGAT 60.203 61.111 39.74 32.94 43.02 3.59
220 221 2.867333 GATGGAGCAAGCGACGTCGA 62.867 60.000 39.74 17.86 43.02 4.20
221 222 2.507102 ATGGAGCAAGCGACGTCG 60.507 61.111 32.57 32.57 43.27 5.12
222 223 0.737715 AAGATGGAGCAAGCGACGTC 60.738 55.000 5.18 5.18 0.00 4.34
223 224 0.737715 GAAGATGGAGCAAGCGACGT 60.738 55.000 0.00 0.00 0.00 4.34
224 225 0.459237 AGAAGATGGAGCAAGCGACG 60.459 55.000 0.00 0.00 0.00 5.12
225 226 1.663135 GAAGAAGATGGAGCAAGCGAC 59.337 52.381 0.00 0.00 0.00 5.19
226 227 1.737029 CGAAGAAGATGGAGCAAGCGA 60.737 52.381 0.00 0.00 0.00 4.93
227 228 0.649475 CGAAGAAGATGGAGCAAGCG 59.351 55.000 0.00 0.00 0.00 4.68
228 229 2.015736 TCGAAGAAGATGGAGCAAGC 57.984 50.000 0.00 0.00 0.00 4.01
246 247 2.033662 GCTAAATTCGCTCGACACCATC 60.034 50.000 0.00 0.00 0.00 3.51
247 248 1.933853 GCTAAATTCGCTCGACACCAT 59.066 47.619 0.00 0.00 0.00 3.55
248 249 1.337354 TGCTAAATTCGCTCGACACCA 60.337 47.619 0.00 0.00 0.00 4.17
249 250 1.324736 CTGCTAAATTCGCTCGACACC 59.675 52.381 0.00 0.00 0.00 4.16
250 251 1.993370 ACTGCTAAATTCGCTCGACAC 59.007 47.619 0.00 0.00 0.00 3.67
251 252 2.363788 ACTGCTAAATTCGCTCGACA 57.636 45.000 0.00 0.00 0.00 4.35
252 253 2.924290 AGAACTGCTAAATTCGCTCGAC 59.076 45.455 0.00 0.00 0.00 4.20
253 254 3.179830 GAGAACTGCTAAATTCGCTCGA 58.820 45.455 2.01 0.00 0.00 4.04
254 255 2.282820 GGAGAACTGCTAAATTCGCTCG 59.717 50.000 2.01 0.00 0.00 5.03
255 256 2.282820 CGGAGAACTGCTAAATTCGCTC 59.717 50.000 2.01 0.00 0.00 5.03
256 257 2.271800 CGGAGAACTGCTAAATTCGCT 58.728 47.619 2.01 0.00 0.00 4.93
257 258 1.327764 CCGGAGAACTGCTAAATTCGC 59.672 52.381 0.00 0.00 0.00 4.70
258 259 2.348666 CACCGGAGAACTGCTAAATTCG 59.651 50.000 9.46 0.00 0.00 3.34
259 260 2.678336 CCACCGGAGAACTGCTAAATTC 59.322 50.000 9.46 0.00 0.00 2.17
260 261 2.711542 CCACCGGAGAACTGCTAAATT 58.288 47.619 9.46 0.00 0.00 1.82
261 262 1.679032 GCCACCGGAGAACTGCTAAAT 60.679 52.381 9.46 0.00 0.00 1.40
262 263 0.321298 GCCACCGGAGAACTGCTAAA 60.321 55.000 9.46 0.00 0.00 1.85
263 264 1.295423 GCCACCGGAGAACTGCTAA 59.705 57.895 9.46 0.00 0.00 3.09
264 265 1.476845 TTGCCACCGGAGAACTGCTA 61.477 55.000 9.46 0.00 0.00 3.49
265 266 2.738213 CTTGCCACCGGAGAACTGCT 62.738 60.000 9.46 0.00 0.00 4.24
266 267 2.281484 TTGCCACCGGAGAACTGC 60.281 61.111 9.46 0.00 0.00 4.40
267 268 0.671781 CTCTTGCCACCGGAGAACTG 60.672 60.000 9.46 0.00 0.00 3.16
268 269 0.832135 TCTCTTGCCACCGGAGAACT 60.832 55.000 9.46 0.00 33.82 3.01
269 270 0.390472 CTCTCTTGCCACCGGAGAAC 60.390 60.000 9.46 0.00 35.97 3.01
270 271 0.541998 TCTCTCTTGCCACCGGAGAA 60.542 55.000 9.46 0.00 35.97 2.87
271 272 0.541998 TTCTCTCTTGCCACCGGAGA 60.542 55.000 9.46 0.00 35.25 3.71
272 273 0.108424 CTTCTCTCTTGCCACCGGAG 60.108 60.000 9.46 0.00 0.00 4.63
273 274 0.541998 TCTTCTCTCTTGCCACCGGA 60.542 55.000 9.46 0.00 0.00 5.14
274 275 0.108424 CTCTTCTCTCTTGCCACCGG 60.108 60.000 0.00 0.00 0.00 5.28
275 276 0.108424 CCTCTTCTCTCTTGCCACCG 60.108 60.000 0.00 0.00 0.00 4.94
276 277 0.392327 GCCTCTTCTCTCTTGCCACC 60.392 60.000 0.00 0.00 0.00 4.61
277 278 0.739112 CGCCTCTTCTCTCTTGCCAC 60.739 60.000 0.00 0.00 0.00 5.01
278 279 1.593787 CGCCTCTTCTCTCTTGCCA 59.406 57.895 0.00 0.00 0.00 4.92
279 280 1.153469 CCGCCTCTTCTCTCTTGCC 60.153 63.158 0.00 0.00 0.00 4.52
280 281 0.036858 AACCGCCTCTTCTCTCTTGC 60.037 55.000 0.00 0.00 0.00 4.01
281 282 1.404851 GGAACCGCCTCTTCTCTCTTG 60.405 57.143 0.00 0.00 0.00 3.02
282 283 0.899019 GGAACCGCCTCTTCTCTCTT 59.101 55.000 0.00 0.00 0.00 2.85
283 284 0.251832 TGGAACCGCCTCTTCTCTCT 60.252 55.000 0.00 0.00 37.63 3.10
284 285 0.174617 CTGGAACCGCCTCTTCTCTC 59.825 60.000 0.00 0.00 37.63 3.20
285 286 0.251832 TCTGGAACCGCCTCTTCTCT 60.252 55.000 0.00 0.00 37.63 3.10
286 287 0.608640 TTCTGGAACCGCCTCTTCTC 59.391 55.000 0.00 0.00 37.63 2.87
287 288 1.280457 ATTCTGGAACCGCCTCTTCT 58.720 50.000 0.00 0.00 37.63 2.85
288 289 1.740025 CAATTCTGGAACCGCCTCTTC 59.260 52.381 0.00 0.00 37.63 2.87
289 290 1.826385 CAATTCTGGAACCGCCTCTT 58.174 50.000 0.00 0.00 37.63 2.85
290 291 0.678048 GCAATTCTGGAACCGCCTCT 60.678 55.000 0.00 0.00 37.63 3.69
291 292 0.960364 TGCAATTCTGGAACCGCCTC 60.960 55.000 0.00 0.00 37.63 4.70
292 293 0.962356 CTGCAATTCTGGAACCGCCT 60.962 55.000 0.00 0.00 37.63 5.52
293 294 1.244019 ACTGCAATTCTGGAACCGCC 61.244 55.000 0.00 0.00 37.10 6.13
294 295 0.109597 CACTGCAATTCTGGAACCGC 60.110 55.000 0.00 0.00 0.00 5.68
295 296 0.109597 GCACTGCAATTCTGGAACCG 60.110 55.000 0.00 0.00 0.00 4.44
296 297 1.200948 GAGCACTGCAATTCTGGAACC 59.799 52.381 3.30 0.00 0.00 3.62
297 298 1.135859 CGAGCACTGCAATTCTGGAAC 60.136 52.381 3.30 0.00 0.00 3.62
298 299 1.159285 CGAGCACTGCAATTCTGGAA 58.841 50.000 3.30 0.00 0.00 3.53
299 300 0.035317 ACGAGCACTGCAATTCTGGA 59.965 50.000 3.30 0.00 0.00 3.86
300 301 0.167470 CACGAGCACTGCAATTCTGG 59.833 55.000 3.30 0.00 0.00 3.86
301 302 0.870393 ACACGAGCACTGCAATTCTG 59.130 50.000 3.30 0.00 0.00 3.02
302 303 0.870393 CACACGAGCACTGCAATTCT 59.130 50.000 3.30 0.00 0.00 2.40
303 304 0.110056 CCACACGAGCACTGCAATTC 60.110 55.000 3.30 0.00 0.00 2.17
304 305 1.518056 CCCACACGAGCACTGCAATT 61.518 55.000 3.30 0.00 0.00 2.32
305 306 1.968017 CCCACACGAGCACTGCAAT 60.968 57.895 3.30 0.00 0.00 3.56
306 307 2.591429 CCCACACGAGCACTGCAA 60.591 61.111 3.30 0.00 0.00 4.08
307 308 4.624364 CCCCACACGAGCACTGCA 62.624 66.667 3.30 0.00 0.00 4.41
308 309 3.825160 TTCCCCACACGAGCACTGC 62.825 63.158 0.00 0.00 0.00 4.40
309 310 1.669115 CTTCCCCACACGAGCACTG 60.669 63.158 0.00 0.00 0.00 3.66
310 311 1.821061 CTCTTCCCCACACGAGCACT 61.821 60.000 0.00 0.00 0.00 4.40
311 312 1.374758 CTCTTCCCCACACGAGCAC 60.375 63.158 0.00 0.00 0.00 4.40
312 313 1.533033 TCTCTTCCCCACACGAGCA 60.533 57.895 0.00 0.00 0.00 4.26
313 314 1.079750 GTCTCTTCCCCACACGAGC 60.080 63.158 0.00 0.00 0.00 5.03
314 315 1.213013 CGTCTCTTCCCCACACGAG 59.787 63.158 0.00 0.00 32.08 4.18
315 316 1.228337 TCGTCTCTTCCCCACACGA 60.228 57.895 0.00 0.00 37.16 4.35
316 317 1.080705 GTCGTCTCTTCCCCACACG 60.081 63.158 0.00 0.00 0.00 4.49
317 318 0.038159 CAGTCGTCTCTTCCCCACAC 60.038 60.000 0.00 0.00 0.00 3.82
318 319 1.185618 CCAGTCGTCTCTTCCCCACA 61.186 60.000 0.00 0.00 0.00 4.17
319 320 1.592223 CCAGTCGTCTCTTCCCCAC 59.408 63.158 0.00 0.00 0.00 4.61
320 321 2.283529 GCCAGTCGTCTCTTCCCCA 61.284 63.158 0.00 0.00 0.00 4.96
321 322 2.579738 GCCAGTCGTCTCTTCCCC 59.420 66.667 0.00 0.00 0.00 4.81
322 323 2.182030 CGCCAGTCGTCTCTTCCC 59.818 66.667 0.00 0.00 0.00 3.97
323 324 1.137825 CTCGCCAGTCGTCTCTTCC 59.862 63.158 0.00 0.00 39.67 3.46
324 325 1.137825 CCTCGCCAGTCGTCTCTTC 59.862 63.158 0.00 0.00 39.67 2.87
325 326 2.344203 CCCTCGCCAGTCGTCTCTT 61.344 63.158 0.00 0.00 39.67 2.85
326 327 2.752238 CCCTCGCCAGTCGTCTCT 60.752 66.667 0.00 0.00 39.67 3.10
327 328 3.063084 ACCCTCGCCAGTCGTCTC 61.063 66.667 0.00 0.00 39.67 3.36
328 329 3.374402 CACCCTCGCCAGTCGTCT 61.374 66.667 0.00 0.00 39.67 4.18
329 330 3.222354 AACACCCTCGCCAGTCGTC 62.222 63.158 0.00 0.00 39.67 4.20
330 331 3.231736 AACACCCTCGCCAGTCGT 61.232 61.111 0.00 0.00 39.67 4.34
331 332 2.738521 CAACACCCTCGCCAGTCG 60.739 66.667 0.00 0.00 40.15 4.18
332 333 3.050275 GCAACACCCTCGCCAGTC 61.050 66.667 0.00 0.00 0.00 3.51
333 334 4.988598 CGCAACACCCTCGCCAGT 62.989 66.667 0.00 0.00 0.00 4.00
334 335 4.988598 ACGCAACACCCTCGCCAG 62.989 66.667 0.00 0.00 0.00 4.85
356 357 1.878656 AACTCTCCAGCGGGTTCTCG 61.879 60.000 1.81 0.00 34.93 4.04
357 358 1.135053 GTAACTCTCCAGCGGGTTCTC 60.135 57.143 1.81 0.00 34.93 2.87
358 359 0.896226 GTAACTCTCCAGCGGGTTCT 59.104 55.000 1.81 0.00 34.93 3.01
359 360 0.108281 GGTAACTCTCCAGCGGGTTC 60.108 60.000 1.81 0.00 34.93 3.62
360 361 1.980844 GGTAACTCTCCAGCGGGTT 59.019 57.895 1.81 0.00 34.93 4.11
361 362 3.709567 GGTAACTCTCCAGCGGGT 58.290 61.111 1.81 0.00 34.93 5.28
366 367 7.662526 CCCATTAAGGCAGGTAACTCTCCAG 62.663 52.000 0.00 0.00 38.54 3.86
367 368 5.915154 CCCATTAAGGCAGGTAACTCTCCA 61.915 50.000 0.00 0.00 38.54 3.86
368 369 3.433740 CCCATTAAGGCAGGTAACTCTCC 60.434 52.174 0.00 0.00 38.54 3.71
369 370 3.809905 CCCATTAAGGCAGGTAACTCTC 58.190 50.000 0.00 0.00 38.54 3.20
370 371 3.933861 CCCATTAAGGCAGGTAACTCT 57.066 47.619 0.00 0.00 38.54 3.24
381 382 4.455606 CACTCCTTTCTAGCCCATTAAGG 58.544 47.826 0.00 0.00 37.34 2.69
382 383 4.080299 ACCACTCCTTTCTAGCCCATTAAG 60.080 45.833 0.00 0.00 0.00 1.85
383 384 3.850173 ACCACTCCTTTCTAGCCCATTAA 59.150 43.478 0.00 0.00 0.00 1.40
384 385 3.460825 ACCACTCCTTTCTAGCCCATTA 58.539 45.455 0.00 0.00 0.00 1.90
385 386 2.279173 ACCACTCCTTTCTAGCCCATT 58.721 47.619 0.00 0.00 0.00 3.16
386 387 1.972588 ACCACTCCTTTCTAGCCCAT 58.027 50.000 0.00 0.00 0.00 4.00
387 388 2.467880 CTACCACTCCTTTCTAGCCCA 58.532 52.381 0.00 0.00 0.00 5.36
388 389 1.763545 CCTACCACTCCTTTCTAGCCC 59.236 57.143 0.00 0.00 0.00 5.19
389 390 1.763545 CCCTACCACTCCTTTCTAGCC 59.236 57.143 0.00 0.00 0.00 3.93
390 391 2.168728 CACCCTACCACTCCTTTCTAGC 59.831 54.545 0.00 0.00 0.00 3.42
391 392 2.766828 CCACCCTACCACTCCTTTCTAG 59.233 54.545 0.00 0.00 0.00 2.43
392 393 2.829023 CCACCCTACCACTCCTTTCTA 58.171 52.381 0.00 0.00 0.00 2.10
393 394 1.657804 CCACCCTACCACTCCTTTCT 58.342 55.000 0.00 0.00 0.00 2.52
394 395 0.035343 GCCACCCTACCACTCCTTTC 60.035 60.000 0.00 0.00 0.00 2.62
395 396 1.498176 GGCCACCCTACCACTCCTTT 61.498 60.000 0.00 0.00 0.00 3.11
396 397 1.923909 GGCCACCCTACCACTCCTT 60.924 63.158 0.00 0.00 0.00 3.36
397 398 2.285442 GGCCACCCTACCACTCCT 60.285 66.667 0.00 0.00 0.00 3.69
398 399 3.408853 GGGCCACCCTACCACTCC 61.409 72.222 4.39 0.00 41.34 3.85
399 400 3.782443 CGGGCCACCCTACCACTC 61.782 72.222 4.39 0.00 42.67 3.51
400 401 4.651516 ACGGGCCACCCTACCACT 62.652 66.667 4.39 0.00 42.67 4.00
401 402 3.617143 GAACGGGCCACCCTACCAC 62.617 68.421 4.39 0.00 42.67 4.16
402 403 3.324108 GAACGGGCCACCCTACCA 61.324 66.667 4.39 0.00 42.67 3.25
403 404 4.105553 GGAACGGGCCACCCTACC 62.106 72.222 4.39 0.00 42.67 3.18
404 405 4.105553 GGGAACGGGCCACCCTAC 62.106 72.222 19.12 0.00 42.67 3.18
405 406 3.954740 ATGGGAACGGGCCACCCTA 62.955 63.158 24.22 11.89 42.67 3.53
416 417 2.624674 ATACTGGGCCGCATGGGAAC 62.625 60.000 12.02 2.73 38.47 3.62
417 418 1.057275 TATACTGGGCCGCATGGGAA 61.057 55.000 12.02 0.00 38.47 3.97
418 419 0.840288 ATATACTGGGCCGCATGGGA 60.840 55.000 12.02 0.00 38.47 4.37
419 420 0.392998 GATATACTGGGCCGCATGGG 60.393 60.000 2.06 2.06 39.58 4.00
420 421 0.740868 CGATATACTGGGCCGCATGG 60.741 60.000 0.00 0.00 38.77 3.66
421 422 0.246360 TCGATATACTGGGCCGCATG 59.754 55.000 0.00 0.00 0.00 4.06
422 423 0.973632 TTCGATATACTGGGCCGCAT 59.026 50.000 0.00 0.00 0.00 4.73
423 424 0.973632 ATTCGATATACTGGGCCGCA 59.026 50.000 0.00 0.00 0.00 5.69
424 425 1.359848 CATTCGATATACTGGGCCGC 58.640 55.000 0.00 0.00 0.00 6.53
425 426 1.359848 GCATTCGATATACTGGGCCG 58.640 55.000 0.00 0.00 0.00 6.13
426 427 1.739067 GGCATTCGATATACTGGGCC 58.261 55.000 0.00 0.00 0.00 5.80
427 428 1.337823 ACGGCATTCGATATACTGGGC 60.338 52.381 0.00 0.00 42.43 5.36
428 429 2.743636 ACGGCATTCGATATACTGGG 57.256 50.000 0.00 0.00 42.43 4.45
429 430 3.924686 GGTAACGGCATTCGATATACTGG 59.075 47.826 0.00 0.00 42.43 4.00
430 431 4.384846 GTGGTAACGGCATTCGATATACTG 59.615 45.833 0.00 0.00 42.43 2.74
431 432 4.280174 AGTGGTAACGGCATTCGATATACT 59.720 41.667 0.00 0.00 42.43 2.12
432 433 4.553323 AGTGGTAACGGCATTCGATATAC 58.447 43.478 0.00 0.00 42.43 1.47
433 434 4.521639 AGAGTGGTAACGGCATTCGATATA 59.478 41.667 0.00 0.00 42.43 0.86
434 435 3.321111 AGAGTGGTAACGGCATTCGATAT 59.679 43.478 0.00 0.00 42.43 1.63
435 436 2.691526 AGAGTGGTAACGGCATTCGATA 59.308 45.455 0.00 0.00 42.43 2.92
436 437 1.480954 AGAGTGGTAACGGCATTCGAT 59.519 47.619 0.00 0.00 42.43 3.59
437 438 0.892755 AGAGTGGTAACGGCATTCGA 59.107 50.000 0.00 0.00 42.43 3.71
438 439 0.999406 CAGAGTGGTAACGGCATTCG 59.001 55.000 0.00 0.00 45.88 3.34
439 440 0.727398 GCAGAGTGGTAACGGCATTC 59.273 55.000 0.00 0.00 42.51 2.67
440 441 0.324943 AGCAGAGTGGTAACGGCATT 59.675 50.000 0.00 0.00 42.51 3.56
441 442 0.391661 CAGCAGAGTGGTAACGGCAT 60.392 55.000 0.00 0.00 42.51 4.40
442 443 1.005037 CAGCAGAGTGGTAACGGCA 60.005 57.895 0.00 0.00 42.51 5.69
443 444 1.741770 CCAGCAGAGTGGTAACGGC 60.742 63.158 0.00 0.00 42.51 5.68
444 445 0.320374 TTCCAGCAGAGTGGTAACGG 59.680 55.000 0.00 0.00 38.88 4.44
445 446 2.163818 TTTCCAGCAGAGTGGTAACG 57.836 50.000 0.00 0.00 38.88 3.18
474 475 3.554960 GCCAGTTTCTTTGGATGGTTTCC 60.555 47.826 0.00 0.00 45.69 3.13
475 476 3.069443 TGCCAGTTTCTTTGGATGGTTTC 59.931 43.478 0.00 0.00 37.96 2.78
476 477 3.037549 TGCCAGTTTCTTTGGATGGTTT 58.962 40.909 0.00 0.00 37.96 3.27
477 478 2.676748 TGCCAGTTTCTTTGGATGGTT 58.323 42.857 0.00 0.00 37.96 3.67
478 479 2.365293 GTTGCCAGTTTCTTTGGATGGT 59.635 45.455 0.00 0.00 37.96 3.55
479 480 2.629617 AGTTGCCAGTTTCTTTGGATGG 59.370 45.455 0.00 0.00 37.96 3.51
480 481 3.318839 TGAGTTGCCAGTTTCTTTGGATG 59.681 43.478 0.00 0.00 37.96 3.51
481 482 3.565307 TGAGTTGCCAGTTTCTTTGGAT 58.435 40.909 0.00 0.00 37.96 3.41
482 483 3.011566 TGAGTTGCCAGTTTCTTTGGA 57.988 42.857 0.00 0.00 37.96 3.53
483 484 3.799281 TTGAGTTGCCAGTTTCTTTGG 57.201 42.857 0.00 0.00 38.78 3.28
796 797 2.618053 GCTGCGTATTGGTTACTGACT 58.382 47.619 0.00 0.00 0.00 3.41
803 807 0.676782 GACCAGGCTGCGTATTGGTT 60.677 55.000 9.56 3.43 43.65 3.67
815 819 0.179936 AATCAGCTAGCAGACCAGGC 59.820 55.000 18.83 0.00 0.00 4.85
835 846 1.298014 GCAGGGAAGGTCAGGTCAG 59.702 63.158 0.00 0.00 0.00 3.51
836 847 1.059584 TTGCAGGGAAGGTCAGGTCA 61.060 55.000 0.00 0.00 0.00 4.02
837 848 0.322008 CTTGCAGGGAAGGTCAGGTC 60.322 60.000 0.00 0.00 0.00 3.85
838 849 1.763770 CTTGCAGGGAAGGTCAGGT 59.236 57.895 0.00 0.00 0.00 4.00
839 850 1.676967 GCTTGCAGGGAAGGTCAGG 60.677 63.158 0.00 0.00 0.00 3.86
869 880 0.393402 CTGCTGCTGATTGGGCTGTA 60.393 55.000 0.00 0.00 0.00 2.74
918 941 8.757877 ACAAGTAGATAAGAGAAGAGAATTGCT 58.242 33.333 0.00 0.00 0.00 3.91
919 942 8.940768 ACAAGTAGATAAGAGAAGAGAATTGC 57.059 34.615 0.00 0.00 0.00 3.56
951 974 1.375523 CGGTGGAGGGGAAAGAACG 60.376 63.158 0.00 0.00 0.00 3.95
980 1003 0.602562 GGATCGATGCTCCTCCTCTG 59.397 60.000 9.99 0.00 0.00 3.35
981 1004 0.187117 TGGATCGATGCTCCTCCTCT 59.813 55.000 18.23 0.00 33.69 3.69
982 1005 1.067000 CATGGATCGATGCTCCTCCTC 60.067 57.143 18.23 0.00 33.69 3.71
1091 1141 0.108472 TGCATGTCTCTCGAAGCCTG 60.108 55.000 0.00 0.00 0.00 4.85
1092 1142 0.108424 GTGCATGTCTCTCGAAGCCT 60.108 55.000 0.00 0.00 0.00 4.58
1093 1143 0.390340 TGTGCATGTCTCTCGAAGCC 60.390 55.000 0.00 0.00 0.00 4.35
1094 1144 0.997932 CTGTGCATGTCTCTCGAAGC 59.002 55.000 0.00 0.00 0.00 3.86
1095 1145 1.638133 CCTGTGCATGTCTCTCGAAG 58.362 55.000 0.00 0.00 0.00 3.79
1096 1146 0.247460 CCCTGTGCATGTCTCTCGAA 59.753 55.000 0.00 0.00 0.00 3.71
1097 1147 0.900182 ACCCTGTGCATGTCTCTCGA 60.900 55.000 0.00 0.00 0.00 4.04
1098 1148 0.738762 CACCCTGTGCATGTCTCTCG 60.739 60.000 0.00 0.00 0.00 4.04
1099 1149 0.322975 ACACCCTGTGCATGTCTCTC 59.677 55.000 0.00 0.00 36.98 3.20
1100 1150 1.644509 TACACCCTGTGCATGTCTCT 58.355 50.000 0.00 0.00 36.98 3.10
1101 1151 2.076863 GTTACACCCTGTGCATGTCTC 58.923 52.381 0.00 0.00 36.98 3.36
1102 1152 1.608025 CGTTACACCCTGTGCATGTCT 60.608 52.381 0.00 0.00 36.98 3.41
1103 1153 0.796312 CGTTACACCCTGTGCATGTC 59.204 55.000 0.00 0.00 36.98 3.06
1104 1154 0.107831 ACGTTACACCCTGTGCATGT 59.892 50.000 0.00 0.00 36.98 3.21
1105 1155 0.516877 CACGTTACACCCTGTGCATG 59.483 55.000 0.00 0.00 36.98 4.06
1106 1156 0.107831 ACACGTTACACCCTGTGCAT 59.892 50.000 0.00 0.00 36.98 3.96
1107 1157 0.107606 AACACGTTACACCCTGTGCA 60.108 50.000 0.00 0.00 36.98 4.57
1108 1158 0.306533 CAACACGTTACACCCTGTGC 59.693 55.000 0.00 0.00 36.98 4.57
1109 1159 0.941542 CCAACACGTTACACCCTGTG 59.058 55.000 0.00 0.00 39.75 3.66
1110 1160 0.542805 ACCAACACGTTACACCCTGT 59.457 50.000 0.00 0.00 0.00 4.00
1111 1161 1.332375 CAACCAACACGTTACACCCTG 59.668 52.381 0.00 0.00 0.00 4.45
1112 1162 1.670791 CAACCAACACGTTACACCCT 58.329 50.000 0.00 0.00 0.00 4.34
1113 1163 0.664224 CCAACCAACACGTTACACCC 59.336 55.000 0.00 0.00 0.00 4.61
1114 1164 1.331447 GACCAACCAACACGTTACACC 59.669 52.381 0.00 0.00 0.00 4.16
1115 1165 1.004715 CGACCAACCAACACGTTACAC 60.005 52.381 0.00 0.00 0.00 2.90
1116 1166 1.288350 CGACCAACCAACACGTTACA 58.712 50.000 0.00 0.00 0.00 2.41
1117 1167 1.289276 ACGACCAACCAACACGTTAC 58.711 50.000 0.00 0.00 33.48 2.50
1123 1173 0.180642 TTGCCTACGACCAACCAACA 59.819 50.000 0.00 0.00 0.00 3.33
1275 1325 5.065859 TCGATACTAAAACACGAACGGGATA 59.934 40.000 2.83 0.00 0.00 2.59
1276 1326 4.107622 CGATACTAAAACACGAACGGGAT 58.892 43.478 2.83 0.00 0.00 3.85
1277 1327 3.190327 TCGATACTAAAACACGAACGGGA 59.810 43.478 2.83 0.00 0.00 5.14
1278 1328 3.500982 TCGATACTAAAACACGAACGGG 58.499 45.455 0.00 0.00 0.00 5.28
1279 1329 6.183359 CGATATCGATACTAAAACACGAACGG 60.183 42.308 20.50 0.00 43.02 4.44
1298 1348 4.427096 TGAGGCGAAAGAGATCGATATC 57.573 45.455 12.12 12.12 45.48 1.63
1299 1349 4.742417 CATGAGGCGAAAGAGATCGATAT 58.258 43.478 0.00 0.00 45.48 1.63
1300 1350 3.612717 GCATGAGGCGAAAGAGATCGATA 60.613 47.826 0.00 0.00 45.48 2.92
1301 1351 2.865670 GCATGAGGCGAAAGAGATCGAT 60.866 50.000 0.00 0.00 45.48 3.59
1302 1352 1.536922 GCATGAGGCGAAAGAGATCGA 60.537 52.381 0.00 0.00 45.48 3.59
1303 1353 0.857935 GCATGAGGCGAAAGAGATCG 59.142 55.000 0.00 0.00 45.41 3.69
1328 1378 6.608002 AGTTCATTAGTAGGAAACGAGAGGAT 59.392 38.462 0.00 0.00 0.00 3.24
1330 1380 6.210287 AGTTCATTAGTAGGAAACGAGAGG 57.790 41.667 0.00 0.00 0.00 3.69
1343 1393 6.644347 ACGGATCAGATCAAAGTTCATTAGT 58.356 36.000 12.66 0.00 0.00 2.24
1349 1400 3.794028 CGAGACGGATCAGATCAAAGTTC 59.206 47.826 12.66 8.17 0.00 3.01
1378 1429 2.775960 TGTTGATGGAGCTGGATGAGAT 59.224 45.455 0.00 0.00 0.00 2.75
1495 1546 3.008813 AGCAGAAGGCCATGGATATACAG 59.991 47.826 18.40 0.00 46.50 2.74
1543 1598 3.447586 GGAAGCCCTGCAGTCGATATATA 59.552 47.826 13.81 0.00 0.00 0.86
1829 1884 0.958382 AGCAAAGCGGCGACCAATTA 60.958 50.000 12.98 0.00 39.27 1.40
1832 1887 2.010582 AAAAGCAAAGCGGCGACCAA 62.011 50.000 12.98 0.00 39.27 3.67
1833 1888 2.400896 GAAAAGCAAAGCGGCGACCA 62.401 55.000 12.98 0.00 39.27 4.02
1843 1898 6.735694 GCCTGTCTTTACATCAGAAAAGCAAA 60.736 38.462 0.00 0.00 34.37 3.68
1857 1913 1.804151 TCACGCATTGCCTGTCTTTAC 59.196 47.619 2.41 0.00 0.00 2.01
1860 1916 0.806868 CATCACGCATTGCCTGTCTT 59.193 50.000 2.41 0.00 0.00 3.01
1864 1920 1.515519 GCACATCACGCATTGCCTG 60.516 57.895 2.41 2.00 0.00 4.85
1865 1921 1.246056 AAGCACATCACGCATTGCCT 61.246 50.000 2.41 0.00 35.47 4.75
1866 1922 0.451383 TAAGCACATCACGCATTGCC 59.549 50.000 2.41 0.00 35.47 4.52
1875 1931 4.910195 AGGTGAACATCTTAAGCACATCA 58.090 39.130 10.92 5.13 0.00 3.07
1880 1936 5.221224 CCAACAAAGGTGAACATCTTAAGCA 60.221 40.000 0.62 0.00 30.24 3.91
1882 1938 6.633500 TCCAACAAAGGTGAACATCTTAAG 57.367 37.500 0.62 0.00 30.24 1.85
1883 1939 7.411486 TTTCCAACAAAGGTGAACATCTTAA 57.589 32.000 0.62 0.00 30.24 1.85
1884 1940 7.069331 ACATTTCCAACAAAGGTGAACATCTTA 59.931 33.333 0.62 0.00 30.24 2.10
1886 1942 5.363580 ACATTTCCAACAAAGGTGAACATCT 59.636 36.000 0.00 0.00 0.00 2.90
1892 1960 5.830457 TGATACACATTTCCAACAAAGGTGA 59.170 36.000 16.33 3.64 42.48 4.02
1900 1968 4.496341 CCTGCGATGATACACATTTCCAAC 60.496 45.833 0.00 0.00 39.56 3.77
1909 1977 0.179073 AGGTGCCTGCGATGATACAC 60.179 55.000 0.00 0.00 0.00 2.90
1915 1989 4.457496 ACCGAGGTGCCTGCGATG 62.457 66.667 0.00 0.00 0.00 3.84
1916 1990 4.457496 CACCGAGGTGCCTGCGAT 62.457 66.667 9.54 0.00 39.39 4.58
2055 2130 0.750850 TACTATGCACCCGCTCTTCC 59.249 55.000 0.00 0.00 39.64 3.46
2060 2135 0.397254 AGGAGTACTATGCACCCGCT 60.397 55.000 0.00 0.00 39.64 5.52
2211 2813 6.207221 ACAAAATCAGTATTGATGCACTGTGA 59.793 34.615 12.86 0.00 43.20 3.58
2212 2814 6.384224 ACAAAATCAGTATTGATGCACTGTG 58.616 36.000 2.76 2.76 43.20 3.66
2213 2815 6.579666 ACAAAATCAGTATTGATGCACTGT 57.420 33.333 0.92 1.21 43.20 3.55
2256 2862 7.797123 CGTAAAGTTTGACCAGTTTTATGAGAC 59.203 37.037 0.00 0.00 0.00 3.36
2267 2873 3.183775 CCGACTTCGTAAAGTTTGACCAG 59.816 47.826 0.00 0.00 45.80 4.00
2287 2893 4.380531 ACTCTGCATATACCATTTGTCCG 58.619 43.478 0.00 0.00 0.00 4.79
2288 2894 7.801716 TTTACTCTGCATATACCATTTGTCC 57.198 36.000 0.00 0.00 0.00 4.02
2315 3042 5.823861 TTAACTAGTTACCCCCTTCGTTT 57.176 39.130 14.96 0.00 0.00 3.60
2317 3044 8.227507 TCTATATTAACTAGTTACCCCCTTCGT 58.772 37.037 14.96 0.00 0.00 3.85
2318 3045 8.518702 GTCTATATTAACTAGTTACCCCCTTCG 58.481 40.741 14.96 0.57 0.00 3.79
2319 3046 8.811017 GGTCTATATTAACTAGTTACCCCCTTC 58.189 40.741 14.96 4.79 0.00 3.46
2409 3145 4.814234 ACAAGAATGTGAACGAGCTTTACA 59.186 37.500 0.00 0.00 38.69 2.41
2439 3175 1.925185 GGCTAAGCCTACTTTCGTTCG 59.075 52.381 0.00 0.00 46.69 3.95
2460 3204 1.547372 GTGCAATCAGCCTCCATTTGT 59.453 47.619 0.00 0.00 44.83 2.83
2461 3205 1.468565 CGTGCAATCAGCCTCCATTTG 60.469 52.381 0.00 0.00 44.83 2.32
2536 3280 6.256321 GCTCCGCACATCATCAATTTATTTTT 59.744 34.615 0.00 0.00 0.00 1.94
2537 3281 5.750067 GCTCCGCACATCATCAATTTATTTT 59.250 36.000 0.00 0.00 0.00 1.82
2672 3418 0.098905 TCAGCTCGCATGTCGTCTAC 59.901 55.000 8.91 0.00 39.67 2.59
2677 3423 0.527169 ACATCTCAGCTCGCATGTCG 60.527 55.000 0.00 0.00 40.15 4.35
2688 3434 4.694037 TCTCTCAAAATGCACACATCTCAG 59.306 41.667 0.00 0.00 34.62 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.