Multiple sequence alignment - TraesCS2B01G457900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G457900 chr2B 100.000 6168 0 0 1 6168 652577016 652570849 0.000000e+00 11391.0
1 TraesCS2B01G457900 chr2B 87.319 276 33 2 3335 3609 652573532 652573258 1.290000e-81 315.0
2 TraesCS2B01G457900 chr2B 87.319 276 33 2 3485 3759 652573682 652573408 1.290000e-81 315.0
3 TraesCS2B01G457900 chr2D 92.842 2878 149 27 2394 5243 545861001 545858153 0.000000e+00 4120.0
4 TraesCS2B01G457900 chr2D 90.842 808 35 13 1558 2342 545861792 545861001 0.000000e+00 1046.0
5 TraesCS2B01G457900 chr2D 90.038 783 24 10 21 799 545933942 545933210 0.000000e+00 965.0
6 TraesCS2B01G457900 chr2D 90.042 713 35 17 819 1517 545862481 545861791 0.000000e+00 891.0
7 TraesCS2B01G457900 chr2D 89.112 349 27 5 3346 3684 545859965 545859618 2.060000e-114 424.0
8 TraesCS2B01G457900 chr2D 88.333 360 31 5 3410 3759 545860051 545859693 7.390000e-114 422.0
9 TraesCS2B01G457900 chr2D 86.879 282 29 4 3335 3609 545859898 545859618 6.000000e-80 309.0
10 TraesCS2B01G457900 chr2D 86.170 282 31 4 3485 3759 545860051 545859771 1.300000e-76 298.0
11 TraesCS2B01G457900 chr2D 91.667 168 12 2 5271 5436 101687338 101687171 1.340000e-56 231.0
12 TraesCS2B01G457900 chr2D 86.408 206 23 3 3558 3759 545860053 545859849 2.890000e-53 220.0
13 TraesCS2B01G457900 chr2D 85.784 204 24 3 3335 3534 545859820 545859618 1.740000e-50 211.0
14 TraesCS2B01G457900 chr2D 85.882 170 14 7 5487 5646 354316241 354316410 8.220000e-39 172.0
15 TraesCS2B01G457900 chr2A 93.103 1508 76 6 3635 5129 689195242 689196734 0.000000e+00 2183.0
16 TraesCS2B01G457900 chr2A 93.785 1255 59 15 2321 3558 689193699 689194951 0.000000e+00 1868.0
17 TraesCS2B01G457900 chr2A 87.583 1353 89 28 843 2170 689192304 689193602 0.000000e+00 1495.0
18 TraesCS2B01G457900 chr2A 88.468 633 25 20 21 640 686995799 686995202 0.000000e+00 721.0
19 TraesCS2B01G457900 chr2A 86.522 230 26 4 3485 3710 689194725 689194953 1.330000e-61 248.0
20 TraesCS2B01G457900 chr2A 86.700 203 25 2 3558 3759 689194723 689194924 2.240000e-54 224.0
21 TraesCS2B01G457900 chr2A 90.798 163 14 1 5271 5432 12003435 12003273 3.740000e-52 217.0
22 TraesCS2B01G457900 chr2A 96.000 125 5 0 3410 3534 689195242 689195366 2.910000e-48 204.0
23 TraesCS2B01G457900 chr2A 96.000 125 5 0 3560 3684 689195242 689195366 2.910000e-48 204.0
24 TraesCS2B01G457900 chr2A 95.833 96 2 2 697 791 686995186 686995092 2.980000e-33 154.0
25 TraesCS2B01G457900 chr3D 85.781 647 72 17 5487 6120 584542551 584543190 0.000000e+00 667.0
26 TraesCS2B01G457900 chr6B 92.593 162 11 1 5272 5432 690962943 690962782 1.340000e-56 231.0
27 TraesCS2B01G457900 chr7B 91.411 163 13 1 5271 5432 461739322 461739484 8.050000e-54 222.0
28 TraesCS2B01G457900 chr4D 91.411 163 13 1 5271 5432 433108655 433108817 8.050000e-54 222.0
29 TraesCS2B01G457900 chr4D 90.361 166 15 1 5276 5440 505988103 505987938 3.740000e-52 217.0
30 TraesCS2B01G457900 chrUn 90.798 163 14 1 5272 5433 41734376 41734214 3.740000e-52 217.0
31 TraesCS2B01G457900 chrUn 93.939 66 4 0 5487 5552 30914491 30914556 3.930000e-17 100.0
32 TraesCS2B01G457900 chrUn 97.222 36 1 0 5432 5467 255061813 255061848 1.860000e-05 62.1
33 TraesCS2B01G457900 chrUn 97.222 36 1 0 5432 5467 269238819 269238854 1.860000e-05 62.1
34 TraesCS2B01G457900 chr3B 90.798 163 14 1 5272 5433 789487837 789487675 3.740000e-52 217.0
35 TraesCS2B01G457900 chr1B 88.506 174 19 1 5271 5443 174839979 174839806 6.270000e-50 209.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G457900 chr2B 652570849 652577016 6167 True 4007.000000 11391 91.546000 1 6168 3 chr2B.!!$R1 6167
1 TraesCS2B01G457900 chr2D 545933210 545933942 732 True 965.000000 965 90.038000 21 799 1 chr2D.!!$R2 778
2 TraesCS2B01G457900 chr2D 545858153 545862481 4328 True 882.333333 4120 88.490222 819 5243 9 chr2D.!!$R3 4424
3 TraesCS2B01G457900 chr2A 689192304 689196734 4430 False 918.000000 2183 91.384714 843 5129 7 chr2A.!!$F1 4286
4 TraesCS2B01G457900 chr2A 686995092 686995799 707 True 437.500000 721 92.150500 21 791 2 chr2A.!!$R2 770
5 TraesCS2B01G457900 chr3D 584542551 584543190 639 False 667.000000 667 85.781000 5487 6120 1 chr3D.!!$F1 633

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
210 211 0.107606 AACACGTTACACCCTGTGCA 60.108 50.0 0.00 0.00 36.98 4.57 F
211 212 0.107831 ACACGTTACACCCTGTGCAT 59.892 50.0 0.00 0.00 36.98 3.96 F
213 214 0.107831 ACGTTACACCCTGTGCATGT 59.892 50.0 0.00 0.00 36.98 3.21 F
225 226 0.108424 GTGCATGTCTCTCGAAGCCT 60.108 55.0 0.00 0.00 0.00 4.58 F
226 227 0.108472 TGCATGTCTCTCGAAGCCTG 60.108 55.0 0.00 0.00 0.00 4.85 F
502 522 0.179936 AATCAGCTAGCAGACCAGGC 59.820 55.0 18.83 0.00 0.00 4.85 F
514 534 0.676782 GACCAGGCTGCGTATTGGTT 60.677 55.0 9.56 3.43 43.65 3.67 F
1026 1059 0.960364 TGCAATTCTGGAACCGCCTC 60.960 55.0 0.00 0.00 37.63 4.70 F
2536 2623 0.483770 TGGGTGGGGGTAAAAGAACC 59.516 55.0 0.00 0.00 38.94 3.62 F
3136 3237 0.252479 CCCTGATGTCTGCTGCTCTT 59.748 55.0 0.00 0.00 0.00 2.85 F
4000 4396 0.617820 GGAGGCTGGAGTCTGGGTTA 60.618 60.0 0.00 0.00 0.00 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1026 1059 0.108424 CTCCGGTGGCAAGAGAGAAG 60.108 60.000 0.00 0.00 0.00 2.85 R
1558 1599 0.319986 TGGTGTGCGATTGAGCGTTA 60.320 50.000 0.00 0.00 40.67 3.18 R
1904 1980 2.350772 CGTGGAAAGTTGTTCCTCATGC 60.351 50.000 6.67 0.00 39.31 4.06 R
1905 1981 2.878406 ACGTGGAAAGTTGTTCCTCATG 59.122 45.455 6.67 0.00 39.31 3.07 R
1906 1982 3.139077 GACGTGGAAAGTTGTTCCTCAT 58.861 45.455 0.00 0.00 39.31 2.90 R
2466 2553 0.398318 GTGACAAAGGCCCTGACTCT 59.602 55.000 9.39 0.00 0.00 3.24 R
2526 2613 5.934935 TCGGTGATTCTTGGTTCTTTTAC 57.065 39.130 0.00 0.00 0.00 2.01 R
2936 3031 1.089920 GATGCCTCGTTCAACTGCAT 58.910 50.000 8.33 8.33 44.74 3.96 R
4424 4826 0.528684 CTCGACGCCTCCTTGAATCC 60.529 60.000 0.00 0.00 0.00 3.01 R
4940 5366 0.178981 AGTTGCCACCAGTGCATCTT 60.179 50.000 0.00 0.00 38.76 2.40 R
5510 5938 0.108186 CCATTGGCTAGCGACACTCA 60.108 55.000 9.00 0.00 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 6.183359 CGATATCGATACTAAAACACGAACGG 60.183 42.308 20.50 0.00 43.02 4.44
40 41 3.190327 TCGATACTAAAACACGAACGGGA 59.810 43.478 2.83 0.00 0.00 5.14
41 42 4.107622 CGATACTAAAACACGAACGGGAT 58.892 43.478 2.83 0.00 0.00 3.85
42 43 5.065859 TCGATACTAAAACACGAACGGGATA 59.934 40.000 2.83 0.00 0.00 2.59
194 195 0.180642 TTGCCTACGACCAACCAACA 59.819 50.000 0.00 0.00 0.00 3.33
200 201 1.289276 ACGACCAACCAACACGTTAC 58.711 50.000 0.00 0.00 33.48 2.50
201 202 1.288350 CGACCAACCAACACGTTACA 58.712 50.000 0.00 0.00 0.00 2.41
202 203 1.004715 CGACCAACCAACACGTTACAC 60.005 52.381 0.00 0.00 0.00 2.90
203 204 1.331447 GACCAACCAACACGTTACACC 59.669 52.381 0.00 0.00 0.00 4.16
204 205 0.664224 CCAACCAACACGTTACACCC 59.336 55.000 0.00 0.00 0.00 4.61
205 206 1.670791 CAACCAACACGTTACACCCT 58.329 50.000 0.00 0.00 0.00 4.34
206 207 1.332375 CAACCAACACGTTACACCCTG 59.668 52.381 0.00 0.00 0.00 4.45
207 208 0.542805 ACCAACACGTTACACCCTGT 59.457 50.000 0.00 0.00 0.00 4.00
208 209 0.941542 CCAACACGTTACACCCTGTG 59.058 55.000 0.00 0.00 39.75 3.66
209 210 0.306533 CAACACGTTACACCCTGTGC 59.693 55.000 0.00 0.00 36.98 4.57
210 211 0.107606 AACACGTTACACCCTGTGCA 60.108 50.000 0.00 0.00 36.98 4.57
211 212 0.107831 ACACGTTACACCCTGTGCAT 59.892 50.000 0.00 0.00 36.98 3.96
212 213 0.516877 CACGTTACACCCTGTGCATG 59.483 55.000 0.00 0.00 36.98 4.06
213 214 0.107831 ACGTTACACCCTGTGCATGT 59.892 50.000 0.00 0.00 36.98 3.21
214 215 0.796312 CGTTACACCCTGTGCATGTC 59.204 55.000 0.00 0.00 36.98 3.06
215 216 1.608025 CGTTACACCCTGTGCATGTCT 60.608 52.381 0.00 0.00 36.98 3.41
216 217 2.076863 GTTACACCCTGTGCATGTCTC 58.923 52.381 0.00 0.00 36.98 3.36
217 218 1.644509 TACACCCTGTGCATGTCTCT 58.355 50.000 0.00 0.00 36.98 3.10
218 219 0.322975 ACACCCTGTGCATGTCTCTC 59.677 55.000 0.00 0.00 36.98 3.20
219 220 0.738762 CACCCTGTGCATGTCTCTCG 60.739 60.000 0.00 0.00 0.00 4.04
220 221 0.900182 ACCCTGTGCATGTCTCTCGA 60.900 55.000 0.00 0.00 0.00 4.04
221 222 0.247460 CCCTGTGCATGTCTCTCGAA 59.753 55.000 0.00 0.00 0.00 3.71
222 223 1.638133 CCTGTGCATGTCTCTCGAAG 58.362 55.000 0.00 0.00 0.00 3.79
223 224 0.997932 CTGTGCATGTCTCTCGAAGC 59.002 55.000 0.00 0.00 0.00 3.86
224 225 0.390340 TGTGCATGTCTCTCGAAGCC 60.390 55.000 0.00 0.00 0.00 4.35
225 226 0.108424 GTGCATGTCTCTCGAAGCCT 60.108 55.000 0.00 0.00 0.00 4.58
226 227 0.108472 TGCATGTCTCTCGAAGCCTG 60.108 55.000 0.00 0.00 0.00 4.85
335 336 1.067000 CATGGATCGATGCTCCTCCTC 60.067 57.143 18.23 0.00 33.69 3.71
336 337 0.187117 TGGATCGATGCTCCTCCTCT 59.813 55.000 18.23 0.00 33.69 3.69
337 338 0.602562 GGATCGATGCTCCTCCTCTG 59.397 60.000 9.99 0.00 0.00 3.35
366 367 1.375523 CGGTGGAGGGGAAAGAACG 60.376 63.158 0.00 0.00 0.00 3.95
398 399 8.940768 ACAAGTAGATAAGAGAAGAGAATTGC 57.059 34.615 0.00 0.00 0.00 3.56
399 400 8.757877 ACAAGTAGATAAGAGAAGAGAATTGCT 58.242 33.333 0.00 0.00 0.00 3.91
448 457 0.393402 CTGCTGCTGATTGGGCTGTA 60.393 55.000 0.00 0.00 0.00 2.74
478 491 1.676967 GCTTGCAGGGAAGGTCAGG 60.677 63.158 0.00 0.00 0.00 3.86
479 492 1.763770 CTTGCAGGGAAGGTCAGGT 59.236 57.895 0.00 0.00 0.00 4.00
480 493 0.322008 CTTGCAGGGAAGGTCAGGTC 60.322 60.000 0.00 0.00 0.00 3.85
481 494 1.059584 TTGCAGGGAAGGTCAGGTCA 61.060 55.000 0.00 0.00 0.00 4.02
482 495 1.298014 GCAGGGAAGGTCAGGTCAG 59.702 63.158 0.00 0.00 0.00 3.51
502 522 0.179936 AATCAGCTAGCAGACCAGGC 59.820 55.000 18.83 0.00 0.00 4.85
514 534 0.676782 GACCAGGCTGCGTATTGGTT 60.677 55.000 9.56 3.43 43.65 3.67
521 544 2.618053 GCTGCGTATTGGTTACTGACT 58.382 47.619 0.00 0.00 0.00 3.41
834 857 3.799281 TTGAGTTGCCAGTTTCTTTGG 57.201 42.857 0.00 0.00 38.78 3.28
841 864 3.037549 TGCCAGTTTCTTTGGATGGTTT 58.962 40.909 0.00 0.00 37.96 3.27
932 960 2.279173 ACCACTCCTTTCTAGCCCATT 58.721 47.619 0.00 0.00 0.00 3.16
989 1022 3.374402 CACCCTCGCCAGTCGTCT 61.374 66.667 0.00 0.00 39.67 4.18
1026 1059 0.960364 TGCAATTCTGGAACCGCCTC 60.960 55.000 0.00 0.00 37.63 4.70
1069 1103 1.337354 TGCTAAATTCGCTCGACACCA 60.337 47.619 0.00 0.00 0.00 4.17
1127 1161 3.047877 CCCGTGAACCTGGTTCGC 61.048 66.667 33.00 33.00 44.55 4.70
1159 1195 3.132925 CGTCTCCGTTTTGGTAGGAAAA 58.867 45.455 0.00 0.00 39.52 2.29
1161 1197 4.214758 CGTCTCCGTTTTGGTAGGAAAAAT 59.785 41.667 0.00 0.00 39.52 1.82
1165 1201 6.877322 TCTCCGTTTTGGTAGGAAAAATAGAG 59.123 38.462 0.00 0.00 39.52 2.43
1417 1455 8.857216 CAGTCAAATGAAAATGTAAGATTGCTC 58.143 33.333 0.00 0.00 0.00 4.26
1468 1509 3.626028 ACCATTGCTTCTTTCGACAAC 57.374 42.857 0.00 0.00 0.00 3.32
1540 1581 2.476873 AACTCTCGGTTGATCGATCG 57.523 50.000 20.03 9.36 38.55 3.69
1544 1585 1.330829 TCTCGGTTGATCGATCGTGAG 59.669 52.381 20.03 20.49 38.55 3.51
1547 1588 1.846782 CGGTTGATCGATCGTGAGTTC 59.153 52.381 20.03 6.44 0.00 3.01
1571 1612 2.531206 ACTCTCTTAACGCTCAATCGC 58.469 47.619 0.00 0.00 0.00 4.58
1583 1624 2.287188 GCTCAATCGCACACCATATTGG 60.287 50.000 0.00 0.00 45.02 3.16
1697 1760 7.690454 TGGGAAATAAGATATTCTCAGTCCA 57.310 36.000 0.00 0.00 31.27 4.02
1862 1927 9.801873 ACATAACATAACATAACAGAAAATGGC 57.198 29.630 0.00 0.00 0.00 4.40
1875 1940 5.829924 ACAGAAAATGGCGATTCTATTCCAT 59.170 36.000 0.00 0.00 40.77 3.41
1884 1949 5.005779 GGCGATTCTATTCCATATTAGTGCG 59.994 44.000 0.00 0.00 0.00 5.34
1885 1961 5.805486 GCGATTCTATTCCATATTAGTGCGA 59.195 40.000 0.00 0.00 0.00 5.10
1980 2057 7.158021 TGTTTCAAAAGAAATGAGTGGTTTGT 58.842 30.769 0.00 0.00 0.00 2.83
2028 2105 2.937519 TGCACATTGTGAGGTTTACCA 58.062 42.857 20.77 3.39 35.23 3.25
2054 2131 5.688621 TGTCGTGTGCTAGTTTTAAGTGTAG 59.311 40.000 0.00 0.00 0.00 2.74
2092 2169 6.664515 TCCAGTTGCTTATTTGTAAAGTTCG 58.335 36.000 0.00 0.00 0.00 3.95
2132 2211 7.487822 TGTATGCCCATCCAATTTAAAAGAA 57.512 32.000 0.00 0.00 0.00 2.52
2295 2380 1.536766 TCGATGCTTGCCTTGTTTCTG 59.463 47.619 0.00 0.00 0.00 3.02
2304 2389 5.181245 GCTTGCCTTGTTTCTGAGTATTACA 59.819 40.000 0.00 0.00 0.00 2.41
2372 2458 5.120399 TGTTACACCGTTGAAGAGTGAAAT 58.880 37.500 1.93 0.00 35.47 2.17
2378 2464 6.094325 ACACCGTTGAAGAGTGAAATTTTGTA 59.906 34.615 1.93 0.00 35.47 2.41
2398 2484 2.465813 ACTTCTGTCAGATCCTCCCTG 58.534 52.381 2.68 0.00 0.00 4.45
2419 2505 3.881089 TGTCTTCCGATCGAGCTTGTATA 59.119 43.478 18.66 0.00 0.00 1.47
2460 2546 4.995536 AGGGCCGATAGTACTATACTGTT 58.004 43.478 15.42 0.00 39.81 3.16
2466 2553 6.238842 GCCGATAGTACTATACTGTTTGGACA 60.239 42.308 15.42 0.00 39.81 4.02
2526 2613 1.728323 AAATTGTTTCTGGGTGGGGG 58.272 50.000 0.00 0.00 0.00 5.40
2536 2623 0.483770 TGGGTGGGGGTAAAAGAACC 59.516 55.000 0.00 0.00 38.94 3.62
2538 2625 1.133104 GGGTGGGGGTAAAAGAACCAA 60.133 52.381 0.00 0.00 41.67 3.67
2777 2869 6.874664 TCTTCGTATATTACCAAAGTTGCACA 59.125 34.615 0.00 0.00 0.00 4.57
2795 2887 3.832276 CACAAAATATCCAACACACCGG 58.168 45.455 0.00 0.00 0.00 5.28
2936 3031 9.677567 GCAACTCTAATTTAAACTCAACATTGA 57.322 29.630 0.00 0.00 35.57 2.57
3056 3156 9.971922 ATTTGCAGTAATTATTATTGCCTTCTC 57.028 29.630 23.20 2.96 45.11 2.87
3058 3158 6.989759 TGCAGTAATTATTATTGCCTTCTCGA 59.010 34.615 23.20 6.26 45.11 4.04
3136 3237 0.252479 CCCTGATGTCTGCTGCTCTT 59.748 55.000 0.00 0.00 0.00 2.85
3193 3294 3.277133 GGCAAAGCCGAGCATCAA 58.723 55.556 0.00 0.00 39.62 2.57
3405 3506 1.456705 ATCAGAGGACTCCGGAGCC 60.457 63.158 31.56 29.33 0.00 4.70
3436 3537 4.069232 CTCGCCTCCAACCGCTCA 62.069 66.667 0.00 0.00 0.00 4.26
3509 3613 4.125695 GCGTCGCCTCCTACCGTT 62.126 66.667 5.75 0.00 0.00 4.44
3510 3614 2.101770 CGTCGCCTCCTACCGTTC 59.898 66.667 0.00 0.00 0.00 3.95
3511 3615 2.101770 GTCGCCTCCTACCGTTCG 59.898 66.667 0.00 0.00 0.00 3.95
3512 3616 2.360350 TCGCCTCCTACCGTTCGT 60.360 61.111 0.00 0.00 0.00 3.85
3513 3617 2.101770 CGCCTCCTACCGTTCGTC 59.898 66.667 0.00 0.00 0.00 4.20
3514 3618 2.493501 GCCTCCTACCGTTCGTCC 59.506 66.667 0.00 0.00 0.00 4.79
3515 3619 2.345760 GCCTCCTACCGTTCGTCCA 61.346 63.158 0.00 0.00 0.00 4.02
3516 3620 1.807886 CCTCCTACCGTTCGTCCAG 59.192 63.158 0.00 0.00 0.00 3.86
3517 3621 1.664321 CCTCCTACCGTTCGTCCAGG 61.664 65.000 0.00 0.00 0.00 4.45
3518 3622 1.664321 CTCCTACCGTTCGTCCAGGG 61.664 65.000 0.00 0.00 0.00 4.45
3519 3623 1.980772 CCTACCGTTCGTCCAGGGT 60.981 63.158 0.00 2.78 38.50 4.34
3520 3624 1.509923 CTACCGTTCGTCCAGGGTC 59.490 63.158 0.70 0.00 36.34 4.46
3521 3625 2.262471 CTACCGTTCGTCCAGGGTCG 62.262 65.000 0.00 0.00 36.34 4.79
3557 3661 4.828925 GGAGCACTCCGGAGCAGC 62.829 72.222 31.52 31.52 40.36 5.25
3558 3662 3.768922 GAGCACTCCGGAGCAGCT 61.769 66.667 37.72 37.72 38.43 4.24
3559 3663 3.714871 GAGCACTCCGGAGCAGCTC 62.715 68.421 40.45 40.45 43.95 4.09
3560 3664 4.828925 GCACTCCGGAGCAGCTCC 62.829 72.222 31.38 29.53 46.44 4.70
3633 3818 2.409651 GAGTACTCCGGAGCAGCG 59.590 66.667 31.56 8.93 0.00 5.18
3708 4104 4.074526 GAGCACTCCGGAGCAGCA 62.075 66.667 36.33 5.25 0.00 4.41
3710 4106 4.687215 GCACTCCGGAGCAGCACA 62.687 66.667 32.80 0.00 0.00 4.57
3718 4114 2.409870 GGAGCAGCACATTTCCCGG 61.410 63.158 0.00 0.00 0.00 5.73
3721 4117 2.275380 GCAGCACATTTCCCGGGTT 61.275 57.895 22.86 3.64 0.00 4.11
3740 4136 2.431942 CCTCCAACCGTTCGTCCG 60.432 66.667 0.00 0.00 0.00 4.79
3843 4239 0.900182 AGCTCTGGACGTGGTGATCA 60.900 55.000 0.00 0.00 0.00 2.92
3853 4249 0.914551 GTGGTGATCATTCGTCGTCG 59.085 55.000 0.00 0.00 38.55 5.12
3857 4253 2.917656 GATCATTCGTCGTCGCCGC 61.918 63.158 0.00 0.00 36.96 6.53
3980 4376 2.797850 CGACGCGTCGTTACAGCA 60.798 61.111 43.93 0.00 46.99 4.41
4000 4396 0.617820 GGAGGCTGGAGTCTGGGTTA 60.618 60.000 0.00 0.00 0.00 2.85
4019 4415 1.348008 ATCCATGGGCGTGAGGTCAT 61.348 55.000 13.02 0.00 0.00 3.06
4162 4558 3.427528 GCGTACACGAATCTGAAGAAACA 59.572 43.478 5.84 0.00 43.02 2.83
4195 4591 4.735132 CGGCGGCGACAGAGGAAA 62.735 66.667 29.19 0.00 0.00 3.13
4325 4721 2.279073 CTAGCCCGTCTCCCTCCA 59.721 66.667 0.00 0.00 0.00 3.86
4374 4770 0.679321 GCCCCTTCAGCTTCTTCCTG 60.679 60.000 0.00 0.00 0.00 3.86
4386 4782 2.282958 TTCCTGCTCCTCGTCGGT 60.283 61.111 0.00 0.00 0.00 4.69
4519 4921 3.330267 ACGAATGTTCAAGGAGAAGCTC 58.670 45.455 0.00 0.00 36.78 4.09
4716 5142 1.314730 ACCCACGACGCAAAGAAAAT 58.685 45.000 0.00 0.00 0.00 1.82
4730 5156 2.489971 AGAAAATCCACGACGCAAAGA 58.510 42.857 0.00 0.00 0.00 2.52
4736 5162 1.738350 TCCACGACGCAAAGAAAAACA 59.262 42.857 0.00 0.00 0.00 2.83
4744 5170 1.914700 GCAAAGAAAAACAACGACGCA 59.085 42.857 0.00 0.00 0.00 5.24
4745 5171 2.342948 GCAAAGAAAAACAACGACGCAA 59.657 40.909 0.00 0.00 0.00 4.85
4746 5172 3.181539 GCAAAGAAAAACAACGACGCAAA 60.182 39.130 0.00 0.00 0.00 3.68
4747 5173 4.554864 CAAAGAAAAACAACGACGCAAAG 58.445 39.130 0.00 0.00 0.00 2.77
4748 5174 3.750639 AGAAAAACAACGACGCAAAGA 57.249 38.095 0.00 0.00 0.00 2.52
4749 5175 4.086199 AGAAAAACAACGACGCAAAGAA 57.914 36.364 0.00 0.00 0.00 2.52
4750 5176 4.477780 AGAAAAACAACGACGCAAAGAAA 58.522 34.783 0.00 0.00 0.00 2.52
4751 5177 4.918583 AGAAAAACAACGACGCAAAGAAAA 59.081 33.333 0.00 0.00 0.00 2.29
4752 5178 5.402867 AGAAAAACAACGACGCAAAGAAAAA 59.597 32.000 0.00 0.00 0.00 1.94
4753 5179 4.555718 AAACAACGACGCAAAGAAAAAC 57.444 36.364 0.00 0.00 0.00 2.43
4754 5180 2.521996 ACAACGACGCAAAGAAAAACC 58.478 42.857 0.00 0.00 0.00 3.27
4755 5181 2.095161 ACAACGACGCAAAGAAAAACCA 60.095 40.909 0.00 0.00 0.00 3.67
4756 5182 2.468532 ACGACGCAAAGAAAAACCAG 57.531 45.000 0.00 0.00 0.00 4.00
4757 5183 1.064952 ACGACGCAAAGAAAAACCAGG 59.935 47.619 0.00 0.00 0.00 4.45
4758 5184 1.332375 CGACGCAAAGAAAAACCAGGA 59.668 47.619 0.00 0.00 0.00 3.86
4759 5185 2.727777 GACGCAAAGAAAAACCAGGAC 58.272 47.619 0.00 0.00 0.00 3.85
4760 5186 1.064952 ACGCAAAGAAAAACCAGGACG 59.935 47.619 0.00 0.00 0.00 4.79
4761 5187 1.332375 CGCAAAGAAAAACCAGGACGA 59.668 47.619 0.00 0.00 0.00 4.20
4874 5300 1.341482 TGGTGAAGCACAAGTTGGGAA 60.341 47.619 9.97 0.00 35.86 3.97
5000 5426 2.044946 CACAGGGTAAGGGCAGGC 60.045 66.667 0.00 0.00 0.00 4.85
5002 5428 3.017581 CAGGGTAAGGGCAGGCCT 61.018 66.667 10.54 10.54 36.10 5.19
5004 5430 3.810188 GGGTAAGGGCAGGCCTCC 61.810 72.222 17.67 14.14 36.10 4.30
5040 5466 3.775261 AGGGAAAGCACCGTAGTTTTA 57.225 42.857 0.00 0.00 0.00 1.52
5065 5491 1.339824 CCTGGATCTGCAAGCACTCTT 60.340 52.381 0.00 0.00 0.00 2.85
5084 5510 1.493772 TGTGCAGCGTGTACTACAAC 58.506 50.000 0.00 0.00 33.97 3.32
5111 5538 5.508922 GTGTTCAATTTGTTTGCTTGCTTTG 59.491 36.000 0.00 0.00 35.16 2.77
5119 5546 3.132646 TGTTTGCTTGCTTTGGTTGAGAT 59.867 39.130 0.00 0.00 0.00 2.75
5145 5572 2.005451 CCTGCTGTGCTGTATGTTCTC 58.995 52.381 0.00 0.00 0.00 2.87
5166 5594 8.550376 GTTCTCACAATTAATTTGTTGTTGCAT 58.450 29.630 0.00 0.00 46.51 3.96
5167 5595 8.296799 TCTCACAATTAATTTGTTGTTGCATC 57.703 30.769 0.00 0.00 46.51 3.91
5175 5603 1.803334 TGTTGTTGCATCGAGGGTAC 58.197 50.000 0.00 0.00 0.00 3.34
5193 5621 7.749126 CGAGGGTACACAATAAAATTTGAGAAC 59.251 37.037 0.00 0.00 0.00 3.01
5214 5642 7.402054 AGAACCCAAATGATAAGTGTCACATA 58.598 34.615 5.62 0.00 0.00 2.29
5215 5643 8.055181 AGAACCCAAATGATAAGTGTCACATAT 58.945 33.333 5.62 2.82 0.00 1.78
5218 5646 9.866655 ACCCAAATGATAAGTGTCACATATTAT 57.133 29.630 5.62 2.87 0.00 1.28
5229 5657 7.851508 AGTGTCACATATTATATGCGTGAAAC 58.148 34.615 11.72 12.94 42.59 2.78
5235 5663 3.530265 TTATATGCGTGAAACTCCGGT 57.470 42.857 0.00 0.00 31.75 5.28
5240 5668 1.366366 CGTGAAACTCCGGTCCTGT 59.634 57.895 0.00 0.00 31.75 4.00
5243 5671 0.824595 TGAAACTCCGGTCCTGTCGA 60.825 55.000 0.00 0.00 0.00 4.20
5244 5672 0.531200 GAAACTCCGGTCCTGTCGAT 59.469 55.000 0.00 0.00 0.00 3.59
5245 5673 1.747355 GAAACTCCGGTCCTGTCGATA 59.253 52.381 0.00 0.00 0.00 2.92
5246 5674 1.390565 AACTCCGGTCCTGTCGATAG 58.609 55.000 0.00 1.54 0.00 2.08
5247 5675 1.102222 ACTCCGGTCCTGTCGATAGC 61.102 60.000 0.00 0.00 0.00 2.97
5248 5676 1.077285 TCCGGTCCTGTCGATAGCA 60.077 57.895 0.00 0.00 0.00 3.49
5249 5677 0.681887 TCCGGTCCTGTCGATAGCAA 60.682 55.000 0.00 0.00 0.00 3.91
5250 5678 0.389391 CCGGTCCTGTCGATAGCAAT 59.611 55.000 3.22 0.00 0.00 3.56
5251 5679 1.202533 CCGGTCCTGTCGATAGCAATT 60.203 52.381 3.22 0.00 0.00 2.32
5252 5680 2.128035 CGGTCCTGTCGATAGCAATTC 58.872 52.381 3.22 0.00 0.00 2.17
5253 5681 2.484889 GGTCCTGTCGATAGCAATTCC 58.515 52.381 3.22 0.00 0.00 3.01
5254 5682 2.158957 GGTCCTGTCGATAGCAATTCCA 60.159 50.000 3.22 0.00 0.00 3.53
5255 5683 3.495100 GGTCCTGTCGATAGCAATTCCAT 60.495 47.826 3.22 0.00 0.00 3.41
5256 5684 3.496130 GTCCTGTCGATAGCAATTCCATG 59.504 47.826 3.22 0.00 0.00 3.66
5257 5685 2.810274 CCTGTCGATAGCAATTCCATGG 59.190 50.000 4.97 4.97 0.00 3.66
5258 5686 2.221169 TGTCGATAGCAATTCCATGGC 58.779 47.619 6.96 0.00 0.00 4.40
5259 5687 2.221169 GTCGATAGCAATTCCATGGCA 58.779 47.619 6.96 0.00 0.00 4.92
5260 5688 2.618241 GTCGATAGCAATTCCATGGCAA 59.382 45.455 6.96 2.77 0.00 4.52
5261 5689 3.066621 GTCGATAGCAATTCCATGGCAAA 59.933 43.478 6.96 0.00 0.00 3.68
5262 5690 3.890756 TCGATAGCAATTCCATGGCAAAT 59.109 39.130 6.96 0.00 0.00 2.32
5263 5691 4.341806 TCGATAGCAATTCCATGGCAAATT 59.658 37.500 6.96 6.21 0.00 1.82
5264 5692 5.051816 CGATAGCAATTCCATGGCAAATTT 58.948 37.500 6.96 0.00 0.00 1.82
5265 5693 5.176223 CGATAGCAATTCCATGGCAAATTTC 59.824 40.000 6.96 3.69 0.00 2.17
5266 5694 4.289238 AGCAATTCCATGGCAAATTTCA 57.711 36.364 6.96 0.00 0.00 2.69
5267 5695 4.258543 AGCAATTCCATGGCAAATTTCAG 58.741 39.130 6.96 0.00 0.00 3.02
5268 5696 4.004982 GCAATTCCATGGCAAATTTCAGT 58.995 39.130 6.96 0.00 0.00 3.41
5269 5697 4.093850 GCAATTCCATGGCAAATTTCAGTC 59.906 41.667 6.96 0.00 0.00 3.51
5270 5698 5.239351 CAATTCCATGGCAAATTTCAGTCA 58.761 37.500 6.96 0.00 0.00 3.41
5271 5699 5.687166 ATTCCATGGCAAATTTCAGTCAT 57.313 34.783 6.96 0.00 0.00 3.06
5272 5700 6.795144 ATTCCATGGCAAATTTCAGTCATA 57.205 33.333 6.96 0.00 0.00 2.15
5273 5701 5.581126 TCCATGGCAAATTTCAGTCATAC 57.419 39.130 6.96 0.00 0.00 2.39
5274 5702 5.263599 TCCATGGCAAATTTCAGTCATACT 58.736 37.500 6.96 0.00 0.00 2.12
5275 5703 5.357878 TCCATGGCAAATTTCAGTCATACTC 59.642 40.000 6.96 0.00 0.00 2.59
5276 5704 5.450965 CCATGGCAAATTTCAGTCATACTCC 60.451 44.000 0.00 0.00 0.00 3.85
5277 5705 4.016444 TGGCAAATTTCAGTCATACTCCC 58.984 43.478 0.00 0.00 0.00 4.30
5278 5706 4.263905 TGGCAAATTTCAGTCATACTCCCT 60.264 41.667 0.00 0.00 0.00 4.20
5279 5707 4.336713 GGCAAATTTCAGTCATACTCCCTC 59.663 45.833 0.00 0.00 0.00 4.30
5280 5708 4.336713 GCAAATTTCAGTCATACTCCCTCC 59.663 45.833 0.00 0.00 0.00 4.30
5281 5709 4.408182 AATTTCAGTCATACTCCCTCCG 57.592 45.455 0.00 0.00 0.00 4.63
5282 5710 2.526888 TTCAGTCATACTCCCTCCGT 57.473 50.000 0.00 0.00 0.00 4.69
5283 5711 2.526888 TCAGTCATACTCCCTCCGTT 57.473 50.000 0.00 0.00 0.00 4.44
5284 5712 2.816411 TCAGTCATACTCCCTCCGTTT 58.184 47.619 0.00 0.00 0.00 3.60
5285 5713 2.758979 TCAGTCATACTCCCTCCGTTTC 59.241 50.000 0.00 0.00 0.00 2.78
5286 5714 2.761208 CAGTCATACTCCCTCCGTTTCT 59.239 50.000 0.00 0.00 0.00 2.52
5287 5715 3.952323 CAGTCATACTCCCTCCGTTTCTA 59.048 47.826 0.00 0.00 0.00 2.10
5288 5716 4.401519 CAGTCATACTCCCTCCGTTTCTAA 59.598 45.833 0.00 0.00 0.00 2.10
5289 5717 5.021458 AGTCATACTCCCTCCGTTTCTAAA 58.979 41.667 0.00 0.00 0.00 1.85
5290 5718 5.661759 AGTCATACTCCCTCCGTTTCTAAAT 59.338 40.000 0.00 0.00 0.00 1.40
5291 5719 6.837568 AGTCATACTCCCTCCGTTTCTAAATA 59.162 38.462 0.00 0.00 0.00 1.40
5292 5720 7.509659 AGTCATACTCCCTCCGTTTCTAAATAT 59.490 37.037 0.00 0.00 0.00 1.28
5293 5721 8.800332 GTCATACTCCCTCCGTTTCTAAATATA 58.200 37.037 0.00 0.00 0.00 0.86
5294 5722 9.370930 TCATACTCCCTCCGTTTCTAAATATAA 57.629 33.333 0.00 0.00 0.00 0.98
5295 5723 9.640963 CATACTCCCTCCGTTTCTAAATATAAG 57.359 37.037 0.00 0.00 0.00 1.73
5296 5724 7.672122 ACTCCCTCCGTTTCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
5297 5725 7.724287 ACTCCCTCCGTTTCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
5298 5726 7.564292 ACTCCCTCCGTTTCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
5299 5727 8.315220 TCCCTCCGTTTCTAAATATAAGTCTT 57.685 34.615 0.00 0.00 0.00 3.01
5300 5728 8.765517 TCCCTCCGTTTCTAAATATAAGTCTTT 58.234 33.333 0.00 0.00 0.00 2.52
5301 5729 9.392259 CCCTCCGTTTCTAAATATAAGTCTTTT 57.608 33.333 0.00 0.00 0.00 2.27
5328 5756 8.780846 AGAGATTCCACTATAGACTACATACG 57.219 38.462 6.78 0.00 0.00 3.06
5329 5757 7.825270 AGAGATTCCACTATAGACTACATACGG 59.175 40.741 6.78 0.00 0.00 4.02
5330 5758 7.687388 AGATTCCACTATAGACTACATACGGA 58.313 38.462 6.78 0.00 0.00 4.69
5331 5759 8.330247 AGATTCCACTATAGACTACATACGGAT 58.670 37.037 6.78 0.00 0.00 4.18
5332 5760 7.683437 TTCCACTATAGACTACATACGGATG 57.317 40.000 5.94 5.94 39.16 3.51
5334 5762 7.910584 TCCACTATAGACTACATACGGATGTA 58.089 38.462 19.32 19.32 44.77 2.29
5335 5763 8.546322 TCCACTATAGACTACATACGGATGTAT 58.454 37.037 20.64 9.39 45.42 2.29
5336 5764 9.828039 CCACTATAGACTACATACGGATGTATA 57.172 37.037 20.64 11.03 45.42 1.47
5376 5804 9.408069 GAGTATGGGTTCACTTATTATACTTCG 57.592 37.037 0.00 0.00 31.98 3.79
5377 5805 8.921205 AGTATGGGTTCACTTATTATACTTCGT 58.079 33.333 0.00 0.00 0.00 3.85
5380 5808 9.706691 ATGGGTTCACTTATTATACTTCGTATG 57.293 33.333 0.00 0.00 30.79 2.39
5381 5809 8.698210 TGGGTTCACTTATTATACTTCGTATGT 58.302 33.333 0.00 0.00 30.79 2.29
5393 5821 9.836864 TTATACTTCGTATGTAGTCCTTAGTGA 57.163 33.333 0.00 0.00 30.79 3.41
5394 5822 8.743085 ATACTTCGTATGTAGTCCTTAGTGAA 57.257 34.615 0.00 0.00 0.00 3.18
5395 5823 7.458409 ACTTCGTATGTAGTCCTTAGTGAAA 57.542 36.000 0.00 0.00 0.00 2.69
5396 5824 8.064336 ACTTCGTATGTAGTCCTTAGTGAAAT 57.936 34.615 0.00 0.00 0.00 2.17
5397 5825 8.189460 ACTTCGTATGTAGTCCTTAGTGAAATC 58.811 37.037 0.00 0.00 0.00 2.17
5398 5826 7.876936 TCGTATGTAGTCCTTAGTGAAATCT 57.123 36.000 0.00 0.00 0.00 2.40
5399 5827 7.928103 TCGTATGTAGTCCTTAGTGAAATCTC 58.072 38.462 0.00 0.00 0.00 2.75
5400 5828 7.774157 TCGTATGTAGTCCTTAGTGAAATCTCT 59.226 37.037 0.00 0.00 0.00 3.10
5401 5829 9.053840 CGTATGTAGTCCTTAGTGAAATCTCTA 57.946 37.037 0.00 0.00 0.00 2.43
5403 5831 8.824756 ATGTAGTCCTTAGTGAAATCTCTACA 57.175 34.615 0.00 0.00 39.19 2.74
5404 5832 8.645814 TGTAGTCCTTAGTGAAATCTCTACAA 57.354 34.615 0.00 0.00 34.46 2.41
5405 5833 9.085645 TGTAGTCCTTAGTGAAATCTCTACAAA 57.914 33.333 0.00 0.00 34.46 2.83
5406 5834 9.575783 GTAGTCCTTAGTGAAATCTCTACAAAG 57.424 37.037 0.00 0.00 0.00 2.77
5407 5835 8.423906 AGTCCTTAGTGAAATCTCTACAAAGA 57.576 34.615 0.00 0.00 0.00 2.52
5408 5836 8.308207 AGTCCTTAGTGAAATCTCTACAAAGAC 58.692 37.037 0.00 0.00 0.00 3.01
5409 5837 8.308207 GTCCTTAGTGAAATCTCTACAAAGACT 58.692 37.037 0.00 0.00 0.00 3.24
5410 5838 8.871125 TCCTTAGTGAAATCTCTACAAAGACTT 58.129 33.333 0.00 0.00 0.00 3.01
5427 5855 9.379791 ACAAAGACTTATATTTAGAAACGGAGG 57.620 33.333 0.00 0.00 0.00 4.30
5428 5856 9.595823 CAAAGACTTATATTTAGAAACGGAGGA 57.404 33.333 0.00 0.00 0.00 3.71
5429 5857 9.819267 AAAGACTTATATTTAGAAACGGAGGAG 57.181 33.333 0.00 0.00 0.00 3.69
5430 5858 8.536340 AGACTTATATTTAGAAACGGAGGAGT 57.464 34.615 0.00 0.00 0.00 3.85
5431 5859 9.638176 AGACTTATATTTAGAAACGGAGGAGTA 57.362 33.333 0.00 0.00 0.00 2.59
5432 5860 9.676195 GACTTATATTTAGAAACGGAGGAGTAC 57.324 37.037 0.00 0.00 0.00 2.73
5433 5861 9.193806 ACTTATATTTAGAAACGGAGGAGTACA 57.806 33.333 0.00 0.00 0.00 2.90
5435 5863 9.976511 TTATATTTAGAAACGGAGGAGTACATG 57.023 33.333 0.00 0.00 0.00 3.21
5436 5864 5.988310 TTTAGAAACGGAGGAGTACATGA 57.012 39.130 0.00 0.00 0.00 3.07
5437 5865 3.870633 AGAAACGGAGGAGTACATGAC 57.129 47.619 0.00 0.00 0.00 3.06
5438 5866 3.162666 AGAAACGGAGGAGTACATGACA 58.837 45.455 0.00 0.00 0.00 3.58
5439 5867 3.576982 AGAAACGGAGGAGTACATGACAA 59.423 43.478 0.00 0.00 0.00 3.18
5440 5868 3.594603 AACGGAGGAGTACATGACAAG 57.405 47.619 0.00 0.00 0.00 3.16
5441 5869 2.526432 ACGGAGGAGTACATGACAAGT 58.474 47.619 0.00 0.00 0.00 3.16
5442 5870 2.897969 ACGGAGGAGTACATGACAAGTT 59.102 45.455 0.00 0.00 0.00 2.66
5443 5871 3.323979 ACGGAGGAGTACATGACAAGTTT 59.676 43.478 0.00 0.00 0.00 2.66
5444 5872 3.927142 CGGAGGAGTACATGACAAGTTTC 59.073 47.826 0.00 0.00 0.00 2.78
5445 5873 4.322049 CGGAGGAGTACATGACAAGTTTCT 60.322 45.833 0.00 0.00 0.00 2.52
5446 5874 4.932200 GGAGGAGTACATGACAAGTTTCTG 59.068 45.833 0.00 0.00 0.00 3.02
5447 5875 5.511545 GGAGGAGTACATGACAAGTTTCTGT 60.512 44.000 0.00 0.00 0.00 3.41
5448 5876 5.930135 AGGAGTACATGACAAGTTTCTGTT 58.070 37.500 0.00 0.00 0.00 3.16
5449 5877 7.062749 AGGAGTACATGACAAGTTTCTGTTA 57.937 36.000 0.00 0.00 0.00 2.41
5450 5878 7.506114 AGGAGTACATGACAAGTTTCTGTTAA 58.494 34.615 0.00 0.00 0.00 2.01
5451 5879 7.990886 AGGAGTACATGACAAGTTTCTGTTAAA 59.009 33.333 0.00 0.00 0.00 1.52
5452 5880 8.617809 GGAGTACATGACAAGTTTCTGTTAAAA 58.382 33.333 0.00 0.00 0.00 1.52
5453 5881 9.997482 GAGTACATGACAAGTTTCTGTTAAAAA 57.003 29.630 0.00 0.00 0.00 1.94
5476 5904 9.824534 AAAAATAAACTGAAGCACAAAAAGTTG 57.175 25.926 0.00 0.00 40.84 3.16
5477 5905 7.538303 AATAAACTGAAGCACAAAAAGTTGG 57.462 32.000 0.00 0.00 39.22 3.77
5478 5906 3.525268 ACTGAAGCACAAAAAGTTGGG 57.475 42.857 0.00 0.00 41.47 4.12
5479 5907 3.096092 ACTGAAGCACAAAAAGTTGGGA 58.904 40.909 0.00 0.00 40.98 4.37
5480 5908 3.706086 ACTGAAGCACAAAAAGTTGGGAT 59.294 39.130 0.00 0.00 40.98 3.85
5481 5909 4.202151 ACTGAAGCACAAAAAGTTGGGATC 60.202 41.667 0.00 0.00 40.98 3.36
5482 5910 3.960102 TGAAGCACAAAAAGTTGGGATCT 59.040 39.130 0.00 0.00 40.98 2.75
5483 5911 4.037923 TGAAGCACAAAAAGTTGGGATCTC 59.962 41.667 0.00 0.00 40.98 2.75
5484 5912 2.893489 AGCACAAAAAGTTGGGATCTCC 59.107 45.455 0.00 0.00 40.98 3.71
5485 5913 2.893489 GCACAAAAAGTTGGGATCTCCT 59.107 45.455 0.00 0.00 40.98 3.69
5504 5932 3.254166 TCCTAACACAGGTTCTCACGTAC 59.746 47.826 0.00 0.00 45.71 3.67
5510 5938 2.364324 ACAGGTTCTCACGTACATGTGT 59.636 45.455 9.11 0.00 37.82 3.72
5540 5968 1.209127 GCCAATGGACCGAACGTTG 59.791 57.895 5.00 0.00 35.22 4.10
5545 5973 1.827399 ATGGACCGAACGTTGGCTCT 61.827 55.000 5.00 0.00 0.00 4.09
5546 5974 1.301479 GGACCGAACGTTGGCTCTT 60.301 57.895 5.00 0.00 0.00 2.85
5547 5975 0.037975 GGACCGAACGTTGGCTCTTA 60.038 55.000 5.00 0.00 0.00 2.10
5549 5977 1.925185 GACCGAACGTTGGCTCTTATC 59.075 52.381 5.00 0.00 0.00 1.75
5550 5978 1.549170 ACCGAACGTTGGCTCTTATCT 59.451 47.619 5.00 0.00 0.00 1.98
5562 5998 4.277672 TGGCTCTTATCTACGCGAAACTAT 59.722 41.667 15.93 1.00 0.00 2.12
5565 6001 7.028361 GGCTCTTATCTACGCGAAACTATAAT 58.972 38.462 15.93 0.00 0.00 1.28
5583 6019 6.872547 ACTATAATAACTAAAAGCTAGCGGCC 59.127 38.462 9.55 0.00 43.05 6.13
5591 6027 0.179062 AAGCTAGCGGCCAATCTGAG 60.179 55.000 9.55 0.00 43.05 3.35
5598 6034 2.092968 AGCGGCCAATCTGAGACATTTA 60.093 45.455 2.24 0.00 0.00 1.40
5606 6042 6.524586 GCCAATCTGAGACATTTAAAGTTTCG 59.475 38.462 0.00 0.00 0.00 3.46
5666 6102 8.239314 TGAAACTCAACAATCTATCAAATCTGC 58.761 33.333 0.00 0.00 0.00 4.26
5676 6112 9.512435 CAATCTATCAAATCTGCGAATTCTTTT 57.488 29.630 3.52 0.00 0.00 2.27
5688 6124 8.402472 TCTGCGAATTCTTTTTAGAAAACTCAA 58.598 29.630 3.52 0.00 0.00 3.02
5708 6144 9.657419 AACTCAAATTTTCTGAAAACAGTGAAT 57.343 25.926 17.06 8.56 32.37 2.57
5733 6169 6.907206 ATTTTTCAATGTGTGAACAAGGTG 57.093 33.333 0.00 0.00 46.09 4.00
5735 6171 3.011566 TCAATGTGTGAACAAGGTGGT 57.988 42.857 0.00 0.00 31.51 4.16
5736 6172 2.687425 TCAATGTGTGAACAAGGTGGTG 59.313 45.455 0.00 0.00 31.51 4.17
5758 6194 9.393512 TGGTGATTCTGAACAAAAATTTGAAAT 57.606 25.926 12.54 4.59 40.55 2.17
5803 6240 9.313118 CACTAGCAATTTTTAAAACAGGAAAGT 57.687 29.630 0.00 0.00 0.00 2.66
5832 6269 9.645059 TTTGAAACTCATAAACAAAATGTGACA 57.355 25.926 0.00 0.00 0.00 3.58
5833 6270 9.814899 TTGAAACTCATAAACAAAATGTGACAT 57.185 25.926 0.00 0.00 0.00 3.06
5834 6271 9.814899 TGAAACTCATAAACAAAATGTGACATT 57.185 25.926 4.72 4.72 0.00 2.71
5904 6342 9.838339 AAAACATGAACATTTTGGGTGTTTATA 57.162 25.926 0.00 0.00 39.72 0.98
5941 6379 9.688592 AACAAGAACATTTTTGCAAAATTTGAA 57.311 22.222 28.29 15.82 0.00 2.69
6065 6504 3.935828 TGTGAAACACGAACATGTTCTGA 59.064 39.130 30.45 8.23 45.67 3.27
6072 6511 5.280945 ACACGAACATGTTCTGAAATTTGG 58.719 37.500 30.45 16.89 37.44 3.28
6075 6514 5.156355 CGAACATGTTCTGAAATTTGGGAG 58.844 41.667 30.45 10.97 37.44 4.30
6076 6515 5.278463 CGAACATGTTCTGAAATTTGGGAGT 60.278 40.000 30.45 0.00 37.44 3.85
6080 6519 6.098124 ACATGTTCTGAAATTTGGGAGTGAAA 59.902 34.615 0.00 0.00 0.00 2.69
6084 6523 6.975196 TCTGAAATTTGGGAGTGAAATTCA 57.025 33.333 0.00 0.00 32.94 2.57
6085 6524 7.358770 TCTGAAATTTGGGAGTGAAATTCAA 57.641 32.000 0.00 0.00 32.94 2.69
6086 6525 7.790027 TCTGAAATTTGGGAGTGAAATTCAAA 58.210 30.769 0.00 0.00 32.94 2.69
6089 6528 8.672815 TGAAATTTGGGAGTGAAATTCAAAAAC 58.327 29.630 0.00 0.00 32.94 2.43
6092 6531 4.677584 TGGGAGTGAAATTCAAAAACACG 58.322 39.130 0.00 0.00 36.71 4.49
6093 6532 4.048504 GGGAGTGAAATTCAAAAACACGG 58.951 43.478 0.00 0.00 36.71 4.94
6094 6533 3.489416 GGAGTGAAATTCAAAAACACGGC 59.511 43.478 0.00 0.00 36.71 5.68
6096 6535 4.692228 AGTGAAATTCAAAAACACGGCAT 58.308 34.783 0.00 0.00 36.71 4.40
6098 6537 5.584251 AGTGAAATTCAAAAACACGGCATTT 59.416 32.000 0.00 0.00 36.71 2.32
6163 6602 8.716619 TGTTTAATTAAATGCGTACACTGTTC 57.283 30.769 13.54 0.00 0.00 3.18
6164 6603 8.343366 TGTTTAATTAAATGCGTACACTGTTCA 58.657 29.630 13.54 0.00 0.00 3.18
6165 6604 9.171701 GTTTAATTAAATGCGTACACTGTTCAA 57.828 29.630 13.54 0.00 0.00 2.69
6166 6605 9.900710 TTTAATTAAATGCGTACACTGTTCAAT 57.099 25.926 6.54 0.00 0.00 2.57
6167 6606 9.549509 TTAATTAAATGCGTACACTGTTCAATC 57.450 29.630 0.00 0.00 0.00 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.075148 TCGATATCGATCTCTTTCGCCT 58.925 45.455 23.48 0.00 44.22 5.52
1 2 3.473093 TCGATATCGATCTCTTTCGCC 57.527 47.619 23.48 0.00 44.22 5.54
13 14 6.183359 CCGTTCGTGTTTTAGTATCGATATCG 60.183 42.308 19.14 19.14 41.45 2.92
14 15 6.087291 CCCGTTCGTGTTTTAGTATCGATATC 59.913 42.308 8.66 2.87 0.00 1.63
15 16 5.916883 CCCGTTCGTGTTTTAGTATCGATAT 59.083 40.000 8.66 0.87 0.00 1.63
16 17 5.065859 TCCCGTTCGTGTTTTAGTATCGATA 59.934 40.000 0.00 0.00 0.00 2.92
17 18 4.107622 CCCGTTCGTGTTTTAGTATCGAT 58.892 43.478 2.16 2.16 0.00 3.59
18 19 3.190327 TCCCGTTCGTGTTTTAGTATCGA 59.810 43.478 0.00 0.00 0.00 3.59
19 20 3.500982 TCCCGTTCGTGTTTTAGTATCG 58.499 45.455 0.00 0.00 0.00 2.92
23 24 6.218746 GGATATATCCCGTTCGTGTTTTAGT 58.781 40.000 19.69 0.00 41.20 2.24
38 39 6.867293 GGTTTACAAGTGAGACGGATATATCC 59.133 42.308 20.32 20.32 43.65 2.59
40 41 7.356089 TGGTTTACAAGTGAGACGGATATAT 57.644 36.000 0.00 0.00 0.00 0.86
41 42 6.778834 TGGTTTACAAGTGAGACGGATATA 57.221 37.500 0.00 0.00 0.00 0.86
42 43 5.670792 TGGTTTACAAGTGAGACGGATAT 57.329 39.130 0.00 0.00 0.00 1.63
48 49 4.003648 CCCTCATGGTTTACAAGTGAGAC 58.996 47.826 2.49 0.00 38.81 3.36
194 195 0.107831 ACATGCACAGGGTGTAACGT 59.892 50.000 0.00 0.00 38.12 3.99
200 201 0.738762 CGAGAGACATGCACAGGGTG 60.739 60.000 0.00 0.00 36.51 4.61
201 202 0.900182 TCGAGAGACATGCACAGGGT 60.900 55.000 0.00 0.00 33.31 4.34
202 203 0.247460 TTCGAGAGACATGCACAGGG 59.753 55.000 0.00 0.00 41.84 4.45
203 204 1.638133 CTTCGAGAGACATGCACAGG 58.362 55.000 0.00 0.00 41.84 4.00
204 205 0.997932 GCTTCGAGAGACATGCACAG 59.002 55.000 0.00 0.00 41.84 3.66
205 206 0.390340 GGCTTCGAGAGACATGCACA 60.390 55.000 0.00 0.00 41.84 4.57
206 207 0.108424 AGGCTTCGAGAGACATGCAC 60.108 55.000 0.00 0.00 41.84 4.57
207 208 0.108472 CAGGCTTCGAGAGACATGCA 60.108 55.000 0.00 0.00 41.84 3.96
208 209 1.427592 GCAGGCTTCGAGAGACATGC 61.428 60.000 0.00 7.61 41.84 4.06
209 210 0.108472 TGCAGGCTTCGAGAGACATG 60.108 55.000 0.00 0.00 41.84 3.21
210 211 0.108424 GTGCAGGCTTCGAGAGACAT 60.108 55.000 0.00 0.00 41.84 3.06
211 212 1.290324 GTGCAGGCTTCGAGAGACA 59.710 57.895 0.00 0.00 41.84 3.41
212 213 1.446966 GGTGCAGGCTTCGAGAGAC 60.447 63.158 0.00 0.00 41.84 3.36
213 214 2.973899 GGTGCAGGCTTCGAGAGA 59.026 61.111 0.00 0.00 39.20 3.10
214 215 2.507992 CGGTGCAGGCTTCGAGAG 60.508 66.667 0.00 0.00 0.00 3.20
215 216 4.742201 GCGGTGCAGGCTTCGAGA 62.742 66.667 10.02 0.00 0.00 4.04
220 221 4.927782 TTCGTGCGGTGCAGGCTT 62.928 61.111 10.67 0.00 43.03 4.35
221 222 4.704833 ATTCGTGCGGTGCAGGCT 62.705 61.111 10.67 0.00 43.03 4.58
222 223 4.465512 CATTCGTGCGGTGCAGGC 62.466 66.667 6.61 2.77 43.03 4.85
223 224 3.803082 CCATTCGTGCGGTGCAGG 61.803 66.667 5.19 5.19 44.42 4.85
224 225 2.040213 GATCCATTCGTGCGGTGCAG 62.040 60.000 0.00 0.00 40.08 4.41
225 226 2.046411 ATCCATTCGTGCGGTGCA 60.046 55.556 0.00 0.00 35.60 4.57
226 227 1.643868 TTGATCCATTCGTGCGGTGC 61.644 55.000 0.00 0.00 0.00 5.01
366 367 8.140677 TCTTCTCTTATCTACTTGTAGTACGC 57.859 38.462 7.56 0.00 0.00 4.42
397 398 1.676384 CCTGCCATAGCCTCCTAGC 59.324 63.158 0.00 0.00 38.69 3.42
398 399 1.123861 TGCCTGCCATAGCCTCCTAG 61.124 60.000 0.00 0.00 38.69 3.02
399 400 1.074547 TGCCTGCCATAGCCTCCTA 60.075 57.895 0.00 0.00 38.69 2.94
448 457 2.437359 GCAAGCCACTGCCGATCT 60.437 61.111 0.00 0.00 38.69 2.75
478 491 2.167281 TGGTCTGCTAGCTGATTCTGAC 59.833 50.000 24.77 12.67 0.00 3.51
479 492 2.429971 CTGGTCTGCTAGCTGATTCTGA 59.570 50.000 24.77 8.60 0.00 3.27
480 493 2.483363 CCTGGTCTGCTAGCTGATTCTG 60.483 54.545 24.77 20.75 0.00 3.02
481 494 1.761784 CCTGGTCTGCTAGCTGATTCT 59.238 52.381 24.77 0.00 0.00 2.40
482 495 1.809651 GCCTGGTCTGCTAGCTGATTC 60.810 57.143 24.77 19.60 0.00 2.52
502 522 3.845178 TCAGTCAGTAACCAATACGCAG 58.155 45.455 0.00 0.00 39.62 5.18
514 534 2.875672 GCCCACAAATGCTCAGTCAGTA 60.876 50.000 0.00 0.00 0.00 2.74
521 544 2.676121 CCGGCCCACAAATGCTCA 60.676 61.111 0.00 0.00 0.00 4.26
655 678 0.661020 AAAGGTTGAGGTTTGCGTCG 59.339 50.000 0.00 0.00 32.59 5.12
811 834 4.934602 CCAAAGAAACTGGCAACTCAAAAA 59.065 37.500 0.00 0.00 37.61 1.94
812 835 4.221703 TCCAAAGAAACTGGCAACTCAAAA 59.778 37.500 0.00 0.00 33.63 2.44
813 836 3.766591 TCCAAAGAAACTGGCAACTCAAA 59.233 39.130 0.00 0.00 33.63 2.69
814 837 3.360867 TCCAAAGAAACTGGCAACTCAA 58.639 40.909 0.00 0.00 33.63 3.02
815 838 3.011566 TCCAAAGAAACTGGCAACTCA 57.988 42.857 0.00 0.00 33.63 3.41
816 839 3.305608 CCATCCAAAGAAACTGGCAACTC 60.306 47.826 0.00 0.00 33.63 3.01
817 840 2.629617 CCATCCAAAGAAACTGGCAACT 59.370 45.455 0.00 0.00 33.63 3.16
821 844 3.653344 GAAACCATCCAAAGAAACTGGC 58.347 45.455 0.00 0.00 33.63 4.85
855 878 1.972198 CCGTTACCACTCTGCTGGA 59.028 57.895 0.00 0.00 35.04 3.86
856 879 1.741770 GCCGTTACCACTCTGCTGG 60.742 63.158 0.00 0.00 37.33 4.85
864 888 4.384846 CAGTATATCGAATGCCGTTACCAC 59.615 45.833 0.00 0.00 39.75 4.16
932 960 1.831736 GCTGGAGAGTTACCTGCCTTA 59.168 52.381 0.00 0.00 43.32 2.69
989 1022 1.837051 AGTGCTCGTGTGGGGAAGA 60.837 57.895 0.00 0.00 0.00 2.87
1026 1059 0.108424 CTCCGGTGGCAAGAGAGAAG 60.108 60.000 0.00 0.00 0.00 2.85
1069 1103 2.559440 GCTTGCTCCATCTTCTTCGAT 58.441 47.619 0.00 0.00 0.00 3.59
1127 1161 3.520402 GGAGACGGAGAGCAGGAG 58.480 66.667 0.00 0.00 0.00 3.69
1165 1201 1.601430 GCATCGGATGGAGAAGCTTTC 59.399 52.381 18.96 0.04 0.00 2.62
1394 1432 7.815641 TCGAGCAATCTTACATTTTCATTTGA 58.184 30.769 0.00 0.00 0.00 2.69
1417 1455 6.249893 CAGTAAAACATGCTGATTGATGTTCG 59.750 38.462 0.00 0.00 43.78 3.95
1468 1509 2.670414 GACGGATGCAGTTGAAGAAGAG 59.330 50.000 0.00 0.00 0.00 2.85
1544 1585 2.909863 GAGCGTTAAGAGAGTCACGAAC 59.090 50.000 4.31 2.16 34.49 3.95
1547 1588 2.613730 TGAGCGTTAAGAGAGTCACG 57.386 50.000 0.00 0.00 35.71 4.35
1548 1589 3.544285 CGATTGAGCGTTAAGAGAGTCAC 59.456 47.826 0.00 0.00 0.00 3.67
1550 1591 2.532317 GCGATTGAGCGTTAAGAGAGTC 59.468 50.000 0.00 0.00 0.00 3.36
1552 1593 2.280183 GTGCGATTGAGCGTTAAGAGAG 59.720 50.000 0.00 0.00 40.67 3.20
1554 1595 1.992667 TGTGCGATTGAGCGTTAAGAG 59.007 47.619 0.00 0.00 40.67 2.85
1555 1596 1.724623 GTGTGCGATTGAGCGTTAAGA 59.275 47.619 0.00 0.00 40.67 2.10
1556 1597 1.201921 GGTGTGCGATTGAGCGTTAAG 60.202 52.381 0.00 0.00 40.67 1.85
1557 1598 0.793861 GGTGTGCGATTGAGCGTTAA 59.206 50.000 0.00 0.00 40.67 2.01
1558 1599 0.319986 TGGTGTGCGATTGAGCGTTA 60.320 50.000 0.00 0.00 40.67 3.18
1571 1612 8.375608 TTGAAATTCAAAACCAATATGGTGTG 57.624 30.769 5.87 5.13 36.85 3.82
1697 1760 9.836864 TGCAAAACAATATAGTATCATCTCAGT 57.163 29.630 0.00 0.00 0.00 3.41
1762 1825 7.814107 TCTTATTTCTCAATTTGTTCATGTGCC 59.186 33.333 0.00 0.00 0.00 5.01
1853 1918 8.641498 AATATGGAATAGAATCGCCATTTTCT 57.359 30.769 0.00 0.00 41.19 2.52
1862 1927 7.993821 ATCGCACTAATATGGAATAGAATCG 57.006 36.000 0.00 0.00 28.50 3.34
1899 1975 5.115480 GGAAAGTTGTTCCTCATGCAAAAA 58.885 37.500 0.00 0.00 35.73 1.94
1900 1976 4.161189 TGGAAAGTTGTTCCTCATGCAAAA 59.839 37.500 6.67 0.00 39.31 2.44
1901 1977 3.703556 TGGAAAGTTGTTCCTCATGCAAA 59.296 39.130 6.67 0.00 39.31 3.68
1902 1978 3.068024 GTGGAAAGTTGTTCCTCATGCAA 59.932 43.478 6.67 0.00 39.31 4.08
1903 1979 2.622942 GTGGAAAGTTGTTCCTCATGCA 59.377 45.455 6.67 0.00 39.31 3.96
1904 1980 2.350772 CGTGGAAAGTTGTTCCTCATGC 60.351 50.000 6.67 0.00 39.31 4.06
1905 1981 2.878406 ACGTGGAAAGTTGTTCCTCATG 59.122 45.455 6.67 0.00 39.31 3.07
1906 1982 3.139077 GACGTGGAAAGTTGTTCCTCAT 58.861 45.455 0.00 0.00 39.31 2.90
2028 2105 5.526111 ACACTTAAAACTAGCACACGACAAT 59.474 36.000 0.00 0.00 0.00 2.71
2092 2169 6.817641 TGGGCATACATTTTGAAAATCATGTC 59.182 34.615 16.75 15.32 33.55 3.06
2281 2366 6.801539 TGTAATACTCAGAAACAAGGCAAG 57.198 37.500 0.00 0.00 0.00 4.01
2304 2389 6.532826 AGCAAACAACCCAATGAAACATTAT 58.467 32.000 0.00 0.00 0.00 1.28
2349 2434 3.804786 TCACTCTTCAACGGTGTAACA 57.195 42.857 0.00 0.00 39.98 2.41
2372 2458 5.280011 GGGAGGATCTGACAGAAGTACAAAA 60.280 44.000 9.70 0.00 33.73 2.44
2378 2464 2.225496 ACAGGGAGGATCTGACAGAAGT 60.225 50.000 9.70 0.00 36.22 3.01
2398 2484 2.846039 TACAAGCTCGATCGGAAGAC 57.154 50.000 16.41 3.06 46.97 3.01
2419 2505 3.136626 CCCTAGCAGGCAGTATAAACCTT 59.863 47.826 0.00 0.00 32.73 3.50
2460 2546 0.768221 AAGGCCCTGACTCTGTCCAA 60.768 55.000 0.00 0.00 0.00 3.53
2466 2553 0.398318 GTGACAAAGGCCCTGACTCT 59.602 55.000 9.39 0.00 0.00 3.24
2526 2613 5.934935 TCGGTGATTCTTGGTTCTTTTAC 57.065 39.130 0.00 0.00 0.00 2.01
2536 2623 2.158986 AGGCAGAGATCGGTGATTCTTG 60.159 50.000 1.84 0.00 0.00 3.02
2538 2625 1.786937 AGGCAGAGATCGGTGATTCT 58.213 50.000 1.84 0.00 0.00 2.40
2750 2838 7.903431 GTGCAACTTTGGTAATATACGAAGAAG 59.097 37.037 0.00 0.00 0.00 2.85
2754 2842 7.436430 TTGTGCAACTTTGGTAATATACGAA 57.564 32.000 0.00 0.00 38.04 3.85
2765 2853 5.757320 TGTTGGATATTTTGTGCAACTTTGG 59.243 36.000 10.89 0.00 44.88 3.28
2777 2869 3.756434 CTGTCCGGTGTGTTGGATATTTT 59.244 43.478 0.00 0.00 36.48 1.82
2795 2887 1.599542 GGCGGCATTTCATCTACTGTC 59.400 52.381 3.07 0.00 0.00 3.51
2936 3031 1.089920 GATGCCTCGTTCAACTGCAT 58.910 50.000 8.33 8.33 44.74 3.96
3040 3135 6.942532 TTTGCTCGAGAAGGCAATAATAAT 57.057 33.333 18.75 0.00 45.82 1.28
3128 3229 0.249955 AGCTTCCTCTCAAGAGCAGC 59.750 55.000 16.22 16.22 42.56 5.25
3181 3282 1.023513 GCTTCAGTTGATGCTCGGCT 61.024 55.000 11.46 0.00 40.69 5.52
3192 3293 1.805945 GACGCGATCGGCTTCAGTT 60.806 57.895 15.93 0.00 41.47 3.16
3193 3294 2.202623 GACGCGATCGGCTTCAGT 60.203 61.111 15.93 2.71 41.47 3.41
3330 3431 2.578178 CGACGCGAGCAAGGAGAG 60.578 66.667 15.93 0.00 0.00 3.20
3433 3534 3.144120 CTCGGCGACCCTGGATGAG 62.144 68.421 4.99 0.00 0.00 2.90
3492 3596 4.125695 AACGGTAGGAGGCGACGC 62.126 66.667 12.43 12.43 0.00 5.19
3493 3597 2.101770 GAACGGTAGGAGGCGACG 59.898 66.667 0.00 0.00 0.00 5.12
3494 3598 2.101770 CGAACGGTAGGAGGCGAC 59.898 66.667 0.00 0.00 0.00 5.19
3495 3599 2.360350 ACGAACGGTAGGAGGCGA 60.360 61.111 0.00 0.00 0.00 5.54
3496 3600 2.101770 GACGAACGGTAGGAGGCG 59.898 66.667 0.00 0.00 0.00 5.52
3497 3601 2.280823 CTGGACGAACGGTAGGAGGC 62.281 65.000 0.00 0.00 0.00 4.70
3498 3602 1.664321 CCTGGACGAACGGTAGGAGG 61.664 65.000 0.00 0.00 0.00 4.30
3499 3603 1.664321 CCCTGGACGAACGGTAGGAG 61.664 65.000 0.00 3.28 0.00 3.69
3500 3604 1.679977 CCCTGGACGAACGGTAGGA 60.680 63.158 0.00 0.00 0.00 2.94
3501 3605 1.941999 GACCCTGGACGAACGGTAGG 61.942 65.000 0.00 3.44 0.00 3.18
3502 3606 1.509923 GACCCTGGACGAACGGTAG 59.490 63.158 0.00 0.00 0.00 3.18
3503 3607 2.334946 CGACCCTGGACGAACGGTA 61.335 63.158 1.79 0.00 35.52 4.02
3504 3608 3.677648 CGACCCTGGACGAACGGT 61.678 66.667 1.79 0.00 35.52 4.83
3540 3644 4.828925 GCTGCTCCGGAGTGCTCC 62.829 72.222 31.43 15.59 46.18 4.70
3541 3645 3.714871 GAGCTGCTCCGGAGTGCTC 62.715 68.421 39.20 39.20 43.57 4.26
3542 3646 3.768922 GAGCTGCTCCGGAGTGCT 61.769 66.667 36.51 36.51 40.75 4.40
3543 3647 4.828925 GGAGCTGCTCCGGAGTGC 62.829 72.222 31.03 30.79 41.08 4.40
3551 3655 2.821810 GCGGGAAAGGAGCTGCTC 60.822 66.667 21.17 21.17 0.00 4.26
3552 3656 4.767255 CGCGGGAAAGGAGCTGCT 62.767 66.667 0.00 0.00 0.00 4.24
3554 3658 2.815647 GACGCGGGAAAGGAGCTG 60.816 66.667 12.47 0.00 0.00 4.24
3555 3659 4.436998 CGACGCGGGAAAGGAGCT 62.437 66.667 12.47 0.00 0.00 4.09
3708 4104 1.304134 GAGGCAACCCGGGAAATGT 60.304 57.895 32.02 8.53 35.76 2.71
3710 4106 2.087857 TTGGAGGCAACCCGGGAAAT 62.088 55.000 32.02 10.34 35.76 2.17
3721 4117 2.029964 GACGAACGGTTGGAGGCA 59.970 61.111 9.95 0.00 0.00 4.75
3980 4376 2.040278 CCCAGACTCCAGCCTCCT 59.960 66.667 0.00 0.00 0.00 3.69
4000 4396 1.348008 ATGACCTCACGCCCATGGAT 61.348 55.000 15.22 0.00 0.00 3.41
4065 4461 4.447069 CGCTGCTCGACGACGACT 62.447 66.667 5.75 0.00 43.81 4.18
4162 4558 2.352032 CCGAAGGCTCCGTTCTCCT 61.352 63.158 0.00 0.00 46.14 3.69
4195 4591 4.003788 CCACCGACGGCACCTTCT 62.004 66.667 15.39 0.00 0.00 2.85
4219 4615 2.785868 GCTTGACCAGCCCATACTG 58.214 57.895 0.00 0.00 43.65 2.74
4374 4770 2.179517 CTGACACCGACGAGGAGC 59.820 66.667 8.56 0.00 45.00 4.70
4424 4826 0.528684 CTCGACGCCTCCTTGAATCC 60.529 60.000 0.00 0.00 0.00 3.01
4425 4827 1.148759 GCTCGACGCCTCCTTGAATC 61.149 60.000 0.00 0.00 0.00 2.52
4472 4874 0.620121 CCTTCCCTTCTCTCCTGCCT 60.620 60.000 0.00 0.00 0.00 4.75
4474 4876 1.911471 CCCTTCCCTTCTCTCCTGC 59.089 63.158 0.00 0.00 0.00 4.85
4716 5142 1.738350 TGTTTTTCTTTGCGTCGTGGA 59.262 42.857 0.00 0.00 0.00 4.02
4730 5156 5.367563 GTTTTTCTTTGCGTCGTTGTTTTT 58.632 33.333 0.00 0.00 0.00 1.94
4736 5162 2.478879 CCTGGTTTTTCTTTGCGTCGTT 60.479 45.455 0.00 0.00 0.00 3.85
4744 5170 5.907866 TCTTTTCGTCCTGGTTTTTCTTT 57.092 34.783 0.00 0.00 0.00 2.52
4745 5171 5.907866 TTCTTTTCGTCCTGGTTTTTCTT 57.092 34.783 0.00 0.00 0.00 2.52
4746 5172 5.907866 TTTCTTTTCGTCCTGGTTTTTCT 57.092 34.783 0.00 0.00 0.00 2.52
4747 5173 6.809689 TCTTTTTCTTTTCGTCCTGGTTTTTC 59.190 34.615 0.00 0.00 0.00 2.29
4748 5174 6.588756 GTCTTTTTCTTTTCGTCCTGGTTTTT 59.411 34.615 0.00 0.00 0.00 1.94
4749 5175 6.097356 GTCTTTTTCTTTTCGTCCTGGTTTT 58.903 36.000 0.00 0.00 0.00 2.43
4750 5176 5.393787 GGTCTTTTTCTTTTCGTCCTGGTTT 60.394 40.000 0.00 0.00 0.00 3.27
4751 5177 4.097437 GGTCTTTTTCTTTTCGTCCTGGTT 59.903 41.667 0.00 0.00 0.00 3.67
4752 5178 3.630769 GGTCTTTTTCTTTTCGTCCTGGT 59.369 43.478 0.00 0.00 0.00 4.00
4753 5179 3.630312 TGGTCTTTTTCTTTTCGTCCTGG 59.370 43.478 0.00 0.00 0.00 4.45
4754 5180 4.598062 GTGGTCTTTTTCTTTTCGTCCTG 58.402 43.478 0.00 0.00 0.00 3.86
4755 5181 3.311596 CGTGGTCTTTTTCTTTTCGTCCT 59.688 43.478 0.00 0.00 0.00 3.85
4756 5182 3.310501 TCGTGGTCTTTTTCTTTTCGTCC 59.689 43.478 0.00 0.00 0.00 4.79
4757 5183 4.515432 CTCGTGGTCTTTTTCTTTTCGTC 58.485 43.478 0.00 0.00 0.00 4.20
4758 5184 3.242641 GCTCGTGGTCTTTTTCTTTTCGT 60.243 43.478 0.00 0.00 0.00 3.85
4759 5185 3.289076 GCTCGTGGTCTTTTTCTTTTCG 58.711 45.455 0.00 0.00 0.00 3.46
4760 5186 3.629058 GGCTCGTGGTCTTTTTCTTTTC 58.371 45.455 0.00 0.00 0.00 2.29
4761 5187 2.032924 CGGCTCGTGGTCTTTTTCTTTT 59.967 45.455 0.00 0.00 0.00 2.27
4940 5366 0.178981 AGTTGCCACCAGTGCATCTT 60.179 50.000 0.00 0.00 38.76 2.40
4941 5367 0.892358 CAGTTGCCACCAGTGCATCT 60.892 55.000 0.00 0.00 38.86 2.90
4942 5368 1.582968 CAGTTGCCACCAGTGCATC 59.417 57.895 0.00 0.00 38.76 3.91
4943 5369 2.567497 GCAGTTGCCACCAGTGCAT 61.567 57.895 0.00 0.00 38.76 3.96
4944 5370 3.218470 GCAGTTGCCACCAGTGCA 61.218 61.111 0.00 0.00 34.55 4.57
4945 5371 2.908940 AGCAGTTGCCACCAGTGC 60.909 61.111 0.00 0.00 43.38 4.40
4988 5414 2.692741 AGGAGGCCTGCCCTTACC 60.693 66.667 22.24 8.62 46.60 2.85
5000 5426 1.171308 TGTCCTAAACGACGAGGAGG 58.829 55.000 0.00 4.58 42.61 4.30
5004 5430 1.542915 TCCCTTGTCCTAAACGACGAG 59.457 52.381 0.00 0.00 41.99 4.18
5040 5466 1.822613 CTTGCAGATCCAGGCGCAT 60.823 57.895 10.83 0.00 33.71 4.73
5065 5491 1.067974 AGTTGTAGTACACGCTGCACA 59.932 47.619 1.43 0.00 31.09 4.57
5073 5499 8.322906 CAAATTGAACACAAGTTGTAGTACAC 57.677 34.615 8.49 0.00 41.49 2.90
5084 5510 5.023286 GCAAGCAAACAAATTGAACACAAG 58.977 37.500 0.00 0.00 41.85 3.16
5111 5538 1.808945 CAGCAGGTCAACATCTCAACC 59.191 52.381 0.00 0.00 0.00 3.77
5119 5546 0.467804 TACAGCACAGCAGGTCAACA 59.532 50.000 0.00 0.00 0.00 3.33
5166 5594 7.162761 TCTCAAATTTTATTGTGTACCCTCGA 58.837 34.615 0.00 0.00 0.00 4.04
5167 5595 7.372451 TCTCAAATTTTATTGTGTACCCTCG 57.628 36.000 0.00 0.00 0.00 4.63
5175 5603 9.270640 TCATTTGGGTTCTCAAATTTTATTGTG 57.729 29.630 7.78 0.00 42.63 3.33
5214 5642 4.056050 GACCGGAGTTTCACGCATATAAT 58.944 43.478 9.46 0.00 0.00 1.28
5215 5643 3.450578 GACCGGAGTTTCACGCATATAA 58.549 45.455 9.46 0.00 0.00 0.98
5218 5646 0.108520 GGACCGGAGTTTCACGCATA 60.109 55.000 9.46 0.00 0.00 3.14
5229 5657 1.101635 TGCTATCGACAGGACCGGAG 61.102 60.000 9.46 0.00 0.00 4.63
5235 5663 3.494924 CCATGGAATTGCTATCGACAGGA 60.495 47.826 5.56 0.00 0.00 3.86
5240 5668 2.636647 TGCCATGGAATTGCTATCGA 57.363 45.000 18.40 0.00 35.71 3.59
5243 5671 5.991861 TGAAATTTGCCATGGAATTGCTAT 58.008 33.333 18.40 0.00 35.71 2.97
5244 5672 5.046448 ACTGAAATTTGCCATGGAATTGCTA 60.046 36.000 18.40 2.99 35.71 3.49
5245 5673 4.258543 CTGAAATTTGCCATGGAATTGCT 58.741 39.130 18.40 0.00 35.71 3.91
5246 5674 4.004982 ACTGAAATTTGCCATGGAATTGC 58.995 39.130 18.40 12.66 35.17 3.56
5247 5675 5.239351 TGACTGAAATTTGCCATGGAATTG 58.761 37.500 18.40 4.74 0.00 2.32
5248 5676 5.486735 TGACTGAAATTTGCCATGGAATT 57.513 34.783 18.40 10.83 0.00 2.17
5249 5677 5.687166 ATGACTGAAATTTGCCATGGAAT 57.313 34.783 18.40 4.10 0.00 3.01
5250 5678 5.716228 AGTATGACTGAAATTTGCCATGGAA 59.284 36.000 18.40 0.00 0.00 3.53
5251 5679 5.263599 AGTATGACTGAAATTTGCCATGGA 58.736 37.500 18.40 0.00 0.00 3.41
5252 5680 5.450965 GGAGTATGACTGAAATTTGCCATGG 60.451 44.000 7.63 7.63 0.00 3.66
5253 5681 5.450965 GGGAGTATGACTGAAATTTGCCATG 60.451 44.000 0.00 0.00 0.00 3.66
5254 5682 4.646492 GGGAGTATGACTGAAATTTGCCAT 59.354 41.667 0.00 0.00 0.00 4.40
5255 5683 4.016444 GGGAGTATGACTGAAATTTGCCA 58.984 43.478 0.00 0.00 0.00 4.92
5256 5684 4.273318 AGGGAGTATGACTGAAATTTGCC 58.727 43.478 0.00 0.00 0.00 4.52
5257 5685 4.336713 GGAGGGAGTATGACTGAAATTTGC 59.663 45.833 0.00 0.00 0.00 3.68
5258 5686 4.572389 CGGAGGGAGTATGACTGAAATTTG 59.428 45.833 0.00 0.00 0.00 2.32
5259 5687 4.225267 ACGGAGGGAGTATGACTGAAATTT 59.775 41.667 0.00 0.00 0.00 1.82
5260 5688 3.775316 ACGGAGGGAGTATGACTGAAATT 59.225 43.478 0.00 0.00 0.00 1.82
5261 5689 3.375699 ACGGAGGGAGTATGACTGAAAT 58.624 45.455 0.00 0.00 0.00 2.17
5262 5690 2.816411 ACGGAGGGAGTATGACTGAAA 58.184 47.619 0.00 0.00 0.00 2.69
5263 5691 2.526888 ACGGAGGGAGTATGACTGAA 57.473 50.000 0.00 0.00 0.00 3.02
5264 5692 2.526888 AACGGAGGGAGTATGACTGA 57.473 50.000 0.00 0.00 0.00 3.41
5265 5693 2.761208 AGAAACGGAGGGAGTATGACTG 59.239 50.000 0.00 0.00 0.00 3.51
5266 5694 3.103080 AGAAACGGAGGGAGTATGACT 57.897 47.619 0.00 0.00 0.00 3.41
5267 5695 4.996788 TTAGAAACGGAGGGAGTATGAC 57.003 45.455 0.00 0.00 0.00 3.06
5268 5696 7.850935 ATATTTAGAAACGGAGGGAGTATGA 57.149 36.000 0.00 0.00 0.00 2.15
5269 5697 9.640963 CTTATATTTAGAAACGGAGGGAGTATG 57.359 37.037 0.00 0.00 0.00 2.39
5270 5698 9.377238 ACTTATATTTAGAAACGGAGGGAGTAT 57.623 33.333 0.00 0.00 0.00 2.12
5271 5699 8.773033 ACTTATATTTAGAAACGGAGGGAGTA 57.227 34.615 0.00 0.00 0.00 2.59
5272 5700 7.564292 AGACTTATATTTAGAAACGGAGGGAGT 59.436 37.037 0.00 0.00 0.00 3.85
5273 5701 7.953752 AGACTTATATTTAGAAACGGAGGGAG 58.046 38.462 0.00 0.00 0.00 4.30
5274 5702 7.909485 AGACTTATATTTAGAAACGGAGGGA 57.091 36.000 0.00 0.00 0.00 4.20
5275 5703 8.959705 AAAGACTTATATTTAGAAACGGAGGG 57.040 34.615 0.00 0.00 0.00 4.30
5302 5730 9.872721 CGTATGTAGTCTATAGTGGAATCTCTA 57.127 37.037 0.00 0.00 0.00 2.43
5303 5731 7.825270 CCGTATGTAGTCTATAGTGGAATCTCT 59.175 40.741 0.00 0.00 0.00 3.10
5304 5732 7.823310 TCCGTATGTAGTCTATAGTGGAATCTC 59.177 40.741 0.00 0.00 0.00 2.75
5305 5733 7.687388 TCCGTATGTAGTCTATAGTGGAATCT 58.313 38.462 0.00 0.00 0.00 2.40
5306 5734 7.918536 TCCGTATGTAGTCTATAGTGGAATC 57.081 40.000 0.00 0.00 0.00 2.52
5307 5735 7.889073 ACATCCGTATGTAGTCTATAGTGGAAT 59.111 37.037 0.00 0.00 44.66 3.01
5308 5736 7.229308 ACATCCGTATGTAGTCTATAGTGGAA 58.771 38.462 0.00 0.00 44.66 3.53
5309 5737 6.776744 ACATCCGTATGTAGTCTATAGTGGA 58.223 40.000 0.00 0.00 44.66 4.02
5350 5778 9.408069 CGAAGTATAATAAGTGAACCCATACTC 57.592 37.037 0.00 0.00 29.76 2.59
5351 5779 8.921205 ACGAAGTATAATAAGTGAACCCATACT 58.079 33.333 0.00 0.00 41.94 2.12
5372 5800 8.407064 AGATTTCACTAAGGACTACATACGAAG 58.593 37.037 0.00 0.00 0.00 3.79
5373 5801 8.289939 AGATTTCACTAAGGACTACATACGAA 57.710 34.615 0.00 0.00 0.00 3.85
5374 5802 7.774157 AGAGATTTCACTAAGGACTACATACGA 59.226 37.037 0.00 0.00 0.00 3.43
5375 5803 7.932335 AGAGATTTCACTAAGGACTACATACG 58.068 38.462 0.00 0.00 0.00 3.06
5377 5805 9.916360 TGTAGAGATTTCACTAAGGACTACATA 57.084 33.333 0.00 0.00 34.77 2.29
5378 5806 8.824756 TGTAGAGATTTCACTAAGGACTACAT 57.175 34.615 0.00 0.00 34.77 2.29
5379 5807 8.645814 TTGTAGAGATTTCACTAAGGACTACA 57.354 34.615 0.00 0.00 36.83 2.74
5380 5808 9.575783 CTTTGTAGAGATTTCACTAAGGACTAC 57.424 37.037 0.00 0.00 0.00 2.73
5381 5809 9.529823 TCTTTGTAGAGATTTCACTAAGGACTA 57.470 33.333 8.68 0.00 0.00 2.59
5382 5810 8.308207 GTCTTTGTAGAGATTTCACTAAGGACT 58.692 37.037 0.00 0.00 0.00 3.85
5383 5811 8.308207 AGTCTTTGTAGAGATTTCACTAAGGAC 58.692 37.037 0.00 0.00 0.00 3.85
5384 5812 8.423906 AGTCTTTGTAGAGATTTCACTAAGGA 57.576 34.615 8.68 0.00 0.00 3.36
5401 5829 9.379791 CCTCCGTTTCTAAATATAAGTCTTTGT 57.620 33.333 0.00 0.00 0.00 2.83
5402 5830 9.595823 TCCTCCGTTTCTAAATATAAGTCTTTG 57.404 33.333 0.00 0.00 0.00 2.77
5403 5831 9.819267 CTCCTCCGTTTCTAAATATAAGTCTTT 57.181 33.333 0.00 0.00 0.00 2.52
5404 5832 8.979534 ACTCCTCCGTTTCTAAATATAAGTCTT 58.020 33.333 0.00 0.00 0.00 3.01
5405 5833 8.536340 ACTCCTCCGTTTCTAAATATAAGTCT 57.464 34.615 0.00 0.00 0.00 3.24
5406 5834 9.676195 GTACTCCTCCGTTTCTAAATATAAGTC 57.324 37.037 0.00 0.00 0.00 3.01
5407 5835 9.193806 TGTACTCCTCCGTTTCTAAATATAAGT 57.806 33.333 0.00 0.00 0.00 2.24
5409 5837 9.976511 CATGTACTCCTCCGTTTCTAAATATAA 57.023 33.333 0.00 0.00 0.00 0.98
5410 5838 9.358406 TCATGTACTCCTCCGTTTCTAAATATA 57.642 33.333 0.00 0.00 0.00 0.86
5411 5839 8.142551 GTCATGTACTCCTCCGTTTCTAAATAT 58.857 37.037 0.00 0.00 0.00 1.28
5412 5840 7.123098 TGTCATGTACTCCTCCGTTTCTAAATA 59.877 37.037 0.00 0.00 0.00 1.40
5413 5841 6.070995 TGTCATGTACTCCTCCGTTTCTAAAT 60.071 38.462 0.00 0.00 0.00 1.40
5414 5842 5.244402 TGTCATGTACTCCTCCGTTTCTAAA 59.756 40.000 0.00 0.00 0.00 1.85
5415 5843 4.768448 TGTCATGTACTCCTCCGTTTCTAA 59.232 41.667 0.00 0.00 0.00 2.10
5416 5844 4.338012 TGTCATGTACTCCTCCGTTTCTA 58.662 43.478 0.00 0.00 0.00 2.10
5417 5845 3.162666 TGTCATGTACTCCTCCGTTTCT 58.837 45.455 0.00 0.00 0.00 2.52
5418 5846 3.587797 TGTCATGTACTCCTCCGTTTC 57.412 47.619 0.00 0.00 0.00 2.78
5419 5847 3.323979 ACTTGTCATGTACTCCTCCGTTT 59.676 43.478 0.00 0.00 0.00 3.60
5420 5848 2.897969 ACTTGTCATGTACTCCTCCGTT 59.102 45.455 0.00 0.00 0.00 4.44
5421 5849 2.526432 ACTTGTCATGTACTCCTCCGT 58.474 47.619 0.00 0.00 0.00 4.69
5422 5850 3.594603 AACTTGTCATGTACTCCTCCG 57.405 47.619 0.00 0.00 0.00 4.63
5423 5851 4.932200 CAGAAACTTGTCATGTACTCCTCC 59.068 45.833 0.00 0.00 0.00 4.30
5424 5852 5.542779 ACAGAAACTTGTCATGTACTCCTC 58.457 41.667 0.00 0.00 0.00 3.71
5425 5853 5.552870 ACAGAAACTTGTCATGTACTCCT 57.447 39.130 0.00 0.00 0.00 3.69
5426 5854 7.724305 TTAACAGAAACTTGTCATGTACTCC 57.276 36.000 0.00 0.00 0.00 3.85
5427 5855 9.997482 TTTTTAACAGAAACTTGTCATGTACTC 57.003 29.630 0.00 0.00 0.00 2.59
5450 5878 9.824534 CAACTTTTTGTGCTTCAGTTTATTTTT 57.175 25.926 0.00 0.00 0.00 1.94
5451 5879 8.450180 CCAACTTTTTGTGCTTCAGTTTATTTT 58.550 29.630 0.00 0.00 0.00 1.82
5452 5880 7.065683 CCCAACTTTTTGTGCTTCAGTTTATTT 59.934 33.333 0.00 0.00 0.00 1.40
5453 5881 6.538381 CCCAACTTTTTGTGCTTCAGTTTATT 59.462 34.615 0.00 0.00 0.00 1.40
5454 5882 6.048509 CCCAACTTTTTGTGCTTCAGTTTAT 58.951 36.000 0.00 0.00 0.00 1.40
5455 5883 5.186021 TCCCAACTTTTTGTGCTTCAGTTTA 59.814 36.000 0.00 0.00 0.00 2.01
5456 5884 4.020662 TCCCAACTTTTTGTGCTTCAGTTT 60.021 37.500 0.00 0.00 0.00 2.66
5457 5885 3.513515 TCCCAACTTTTTGTGCTTCAGTT 59.486 39.130 0.00 0.00 0.00 3.16
5458 5886 3.096092 TCCCAACTTTTTGTGCTTCAGT 58.904 40.909 0.00 0.00 0.00 3.41
5459 5887 3.799281 TCCCAACTTTTTGTGCTTCAG 57.201 42.857 0.00 0.00 0.00 3.02
5460 5888 3.960102 AGATCCCAACTTTTTGTGCTTCA 59.040 39.130 0.00 0.00 0.00 3.02
5461 5889 4.550422 GAGATCCCAACTTTTTGTGCTTC 58.450 43.478 0.00 0.00 0.00 3.86
5462 5890 3.321968 GGAGATCCCAACTTTTTGTGCTT 59.678 43.478 0.00 0.00 34.14 3.91
5463 5891 2.893489 GGAGATCCCAACTTTTTGTGCT 59.107 45.455 0.00 0.00 34.14 4.40
5464 5892 2.893489 AGGAGATCCCAACTTTTTGTGC 59.107 45.455 0.00 0.00 37.41 4.57
5465 5893 5.534654 TGTTAGGAGATCCCAACTTTTTGTG 59.465 40.000 10.80 0.00 37.41 3.33
5466 5894 5.535030 GTGTTAGGAGATCCCAACTTTTTGT 59.465 40.000 10.80 0.00 37.41 2.83
5467 5895 5.534654 TGTGTTAGGAGATCCCAACTTTTTG 59.465 40.000 10.80 0.00 37.41 2.44
5468 5896 5.701224 TGTGTTAGGAGATCCCAACTTTTT 58.299 37.500 10.80 0.00 37.41 1.94
5469 5897 5.316987 CTGTGTTAGGAGATCCCAACTTTT 58.683 41.667 10.80 0.00 37.41 2.27
5470 5898 4.911390 CTGTGTTAGGAGATCCCAACTTT 58.089 43.478 10.80 0.00 37.41 2.66
5471 5899 4.559862 CTGTGTTAGGAGATCCCAACTT 57.440 45.455 10.80 0.00 37.41 2.66
5484 5912 4.233123 TGTACGTGAGAACCTGTGTTAG 57.767 45.455 0.00 0.00 33.97 2.34
5485 5913 4.038282 ACATGTACGTGAGAACCTGTGTTA 59.962 41.667 21.82 0.00 33.97 2.41
5504 5932 0.994995 GCTAGCGACACTCACACATG 59.005 55.000 0.00 0.00 0.00 3.21
5510 5938 0.108186 CCATTGGCTAGCGACACTCA 60.108 55.000 9.00 0.00 0.00 3.41
5540 5968 3.081329 AGTTTCGCGTAGATAAGAGCC 57.919 47.619 5.77 0.00 0.00 4.70
5549 5977 9.775060 GCTTTTAGTTATTATAGTTTCGCGTAG 57.225 33.333 5.77 0.00 0.00 3.51
5550 5978 9.520204 AGCTTTTAGTTATTATAGTTTCGCGTA 57.480 29.630 5.77 0.00 0.00 4.42
5562 5998 5.026038 TGGCCGCTAGCTTTTAGTTATTA 57.974 39.130 13.93 0.00 43.05 0.98
5565 6001 3.337694 TTGGCCGCTAGCTTTTAGTTA 57.662 42.857 13.93 0.00 43.05 2.24
5583 6019 9.107367 GTTCGAAACTTTAAATGTCTCAGATTG 57.893 33.333 0.00 0.00 0.00 2.67
5606 6042 8.760569 TTCACTTTTGAAAAACTGTTTCAGTTC 58.239 29.630 14.16 7.60 43.27 3.01
5640 6076 8.239314 GCAGATTTGATAGATTGTTGAGTTTCA 58.761 33.333 0.00 0.00 0.00 2.69
5708 6144 7.493971 CCACCTTGTTCACACATTGAAAAATAA 59.506 33.333 0.00 0.00 46.09 1.40
5715 6151 2.687425 CACCACCTTGTTCACACATTGA 59.313 45.455 0.00 0.00 31.06 2.57
5718 6154 2.727123 TCACCACCTTGTTCACACAT 57.273 45.000 0.00 0.00 31.06 3.21
5719 6155 2.727123 ATCACCACCTTGTTCACACA 57.273 45.000 0.00 0.00 0.00 3.72
5720 6156 3.003689 CAGAATCACCACCTTGTTCACAC 59.996 47.826 0.00 0.00 0.00 3.82
5721 6157 3.118075 TCAGAATCACCACCTTGTTCACA 60.118 43.478 0.00 0.00 0.00 3.58
5733 6169 9.654417 CATTTCAAATTTTTGTTCAGAATCACC 57.346 29.630 3.18 0.00 39.18 4.02
5774 6211 9.660180 TTCCTGTTTTAAAAATTGCTAGTGTTT 57.340 25.926 1.31 0.00 0.00 2.83
5870 6307 9.270640 CCCAAAATGTTCATGTTTTCATAAGAA 57.729 29.630 0.00 0.00 38.64 2.52
5872 6309 8.497554 CACCCAAAATGTTCATGTTTTCATAAG 58.502 33.333 0.00 0.00 38.64 1.73
5875 6312 6.355747 ACACCCAAAATGTTCATGTTTTCAT 58.644 32.000 0.00 0.00 41.78 2.57
6027 6466 7.430793 CGTGTTTCACAAAATTGTTCAGATGTA 59.569 33.333 0.00 0.00 39.91 2.29
6032 6471 6.088749 TGTTCGTGTTTCACAAAATTGTTCAG 59.911 34.615 0.00 0.00 39.91 3.02
6033 6472 5.920840 TGTTCGTGTTTCACAAAATTGTTCA 59.079 32.000 0.00 0.00 39.91 3.18
6045 6484 5.553290 TTTCAGAACATGTTCGTGTTTCA 57.447 34.783 28.18 10.76 42.08 2.69
6059 6498 7.209475 TGAATTTCACTCCCAAATTTCAGAAC 58.791 34.615 0.00 0.00 34.30 3.01
6061 6500 6.975196 TGAATTTCACTCCCAAATTTCAGA 57.025 33.333 0.00 0.00 34.30 3.27
6065 6504 8.458052 GTGTTTTTGAATTTCACTCCCAAATTT 58.542 29.630 0.00 0.00 34.30 1.82
6072 6511 3.489416 GCCGTGTTTTTGAATTTCACTCC 59.511 43.478 0.00 0.00 0.00 3.85
6075 6514 5.402464 AATGCCGTGTTTTTGAATTTCAC 57.598 34.783 0.00 0.00 0.00 3.18
6076 6515 6.428385 AAAATGCCGTGTTTTTGAATTTCA 57.572 29.167 0.00 0.00 0.00 2.69
6137 6576 9.337091 GAACAGTGTACGCATTTAATTAAACAT 57.663 29.630 12.74 0.00 0.00 2.71
6138 6577 8.343366 TGAACAGTGTACGCATTTAATTAAACA 58.657 29.630 12.74 3.67 0.00 2.83
6139 6578 8.716619 TGAACAGTGTACGCATTTAATTAAAC 57.283 30.769 12.74 1.05 0.00 2.01
6140 6579 9.900710 ATTGAACAGTGTACGCATTTAATTAAA 57.099 25.926 12.85 12.85 0.00 1.52
6141 6580 9.549509 GATTGAACAGTGTACGCATTTAATTAA 57.450 29.630 9.48 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.