Multiple sequence alignment - TraesCS2B01G457700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G457700 chr2B 100.000 4163 0 0 1 4163 652413284 652409122 0.000000e+00 7688.0
1 TraesCS2B01G457700 chr2D 84.955 2200 199 61 1980 4134 545852704 545850592 0.000000e+00 2108.0
2 TraesCS2B01G457700 chr2D 88.935 1446 105 18 221 1651 545854276 545852871 0.000000e+00 1733.0
3 TraesCS2B01G457700 chr2D 84.131 397 25 11 238 633 451008810 451009169 2.380000e-92 350.0
4 TraesCS2B01G457700 chr2D 86.792 212 19 4 1 207 545854588 545854381 1.160000e-55 228.0
5 TraesCS2B01G457700 chr2A 89.551 1627 107 18 31 1652 689200713 689202281 0.000000e+00 2004.0
6 TraesCS2B01G457700 chr2A 86.557 729 66 14 2683 3397 689203188 689203898 0.000000e+00 774.0
7 TraesCS2B01G457700 chr2A 85.258 658 67 15 1919 2565 689202390 689203028 0.000000e+00 651.0
8 TraesCS2B01G457700 chr2A 83.051 472 32 15 3693 4134 689204240 689204693 6.530000e-103 385.0
9 TraesCS2B01G457700 chr2A 86.383 235 16 8 3511 3734 689204009 689204238 4.160000e-60 243.0
10 TraesCS2B01G457700 chr7B 84.344 511 54 10 230 740 60368330 60368814 1.050000e-130 477.0
11 TraesCS2B01G457700 chr7B 83.048 525 49 17 230 740 486731313 486730815 1.370000e-119 440.0
12 TraesCS2B01G457700 chr4B 84.344 511 54 10 230 740 59871949 59871465 1.050000e-130 477.0
13 TraesCS2B01G457700 chr6D 84.615 468 46 9 230 697 14448208 14447767 3.820000e-120 442.0
14 TraesCS2B01G457700 chr6D 93.711 159 10 0 1174 1332 2958040 2957882 5.380000e-59 239.0
15 TraesCS2B01G457700 chr6D 100.000 35 0 0 1217 1251 404602733 404602699 9.660000e-07 65.8
16 TraesCS2B01G457700 chr5B 85.449 323 25 10 418 740 42945518 42945218 2.420000e-82 316.0
17 TraesCS2B01G457700 chr7A 95.455 154 7 0 1178 1331 23331925 23331772 3.210000e-61 246.0
18 TraesCS2B01G457700 chr7D 87.558 217 19 5 1119 1331 22782268 22782056 1.160000e-60 244.0
19 TraesCS2B01G457700 chr4A 93.631 157 10 0 1175 1331 707036929 707037085 6.960000e-58 235.0
20 TraesCS2B01G457700 chr6A 91.716 169 12 1 1164 1332 1985426 1985592 2.500000e-57 233.0
21 TraesCS2B01G457700 chr6B 92.405 158 12 0 1175 1332 6168628 6168471 4.190000e-55 226.0
22 TraesCS2B01G457700 chrUn 90.714 140 13 0 1919 2058 299704044 299704183 1.980000e-43 187.0
23 TraesCS2B01G457700 chrUn 90.977 133 12 0 1926 2058 352728641 352728773 3.310000e-41 180.0
24 TraesCS2B01G457700 chrUn 92.742 124 9 0 1935 2058 407129723 407129600 3.310000e-41 180.0
25 TraesCS2B01G457700 chr3D 90.714 140 13 0 1919 2058 29476483 29476344 1.980000e-43 187.0
26 TraesCS2B01G457700 chr3D 90.714 140 13 0 1919 2058 29510595 29510456 1.980000e-43 187.0
27 TraesCS2B01G457700 chr3D 90.714 140 13 0 1919 2058 29550017 29549878 1.980000e-43 187.0
28 TraesCS2B01G457700 chr3D 90.000 140 14 0 1919 2058 29547307 29547168 9.190000e-42 182.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G457700 chr2B 652409122 652413284 4162 True 7688.000000 7688 100.000 1 4163 1 chr2B.!!$R1 4162
1 TraesCS2B01G457700 chr2D 545850592 545854588 3996 True 1356.333333 2108 86.894 1 4134 3 chr2D.!!$R1 4133
2 TraesCS2B01G457700 chr2A 689200713 689204693 3980 False 811.400000 2004 86.160 31 4134 5 chr2A.!!$F1 4103

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
206 211 0.176910 TACGCAATCGCCTGATTCCA 59.823 50.0 0.0 0.0 42.94 3.53 F
914 1017 0.318441 TTCTCTTCTGCGTGTCCCTG 59.682 55.0 0.0 0.0 0.00 4.45 F
1743 1860 0.107268 GTTGGTAGGTGTCCGTTGGT 59.893 55.0 0.0 0.0 0.00 3.67 F
3018 3257 0.239347 CCTTCTTTGCAGCCGAGTTG 59.761 55.0 0.0 0.0 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1724 1841 0.107268 ACCAACGGACACCTACCAAC 59.893 55.0 0.00 0.0 0.0 3.77 R
1787 1904 0.256177 GCCTCTCCCCTTCCGATTTT 59.744 55.0 0.00 0.0 0.0 1.82 R
3135 3374 0.031414 GGTAGGCCTGGTTCTCCCTA 60.031 60.0 17.99 0.0 0.0 3.53 R
3971 4316 0.741221 ACGGAGGAAGCGAGAAATGC 60.741 55.0 0.00 0.0 0.0 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 6.737070 GCCTATATCACTATCCATGATGTCCG 60.737 46.154 0.00 0.00 37.38 4.79
27 28 6.547510 CCTATATCACTATCCATGATGTCCGA 59.452 42.308 0.00 0.00 37.38 4.55
28 29 4.527509 ATCACTATCCATGATGTCCGAC 57.472 45.455 0.00 0.00 35.44 4.79
54 56 6.464222 TGTAACTAGCTGCAGTTTTACAGAT 58.536 36.000 18.43 5.28 39.45 2.90
87 89 6.147656 GCTGGAATTAAAATCCCACAAAACTG 59.852 38.462 7.89 0.00 36.04 3.16
116 118 8.552034 GCTACTCAGAATACCAAATATCAACAC 58.448 37.037 0.00 0.00 0.00 3.32
149 154 2.742589 GGAGCTACAAAACTACCACAGC 59.257 50.000 0.00 0.00 0.00 4.40
153 158 4.039973 AGCTACAAAACTACCACAGCAGTA 59.960 41.667 0.00 0.00 0.00 2.74
158 163 5.989777 ACAAAACTACCACAGCAGTAAGTAG 59.010 40.000 13.74 13.74 38.65 2.57
159 164 3.870633 ACTACCACAGCAGTAAGTAGC 57.129 47.619 14.73 0.00 37.32 3.58
160 165 3.162666 ACTACCACAGCAGTAAGTAGCA 58.837 45.455 14.73 0.00 37.32 3.49
161 166 3.769844 ACTACCACAGCAGTAAGTAGCAT 59.230 43.478 14.73 0.00 37.32 3.79
162 167 3.703001 ACCACAGCAGTAAGTAGCATT 57.297 42.857 0.00 0.00 0.00 3.56
163 168 3.338249 ACCACAGCAGTAAGTAGCATTG 58.662 45.455 0.00 0.00 0.00 2.82
178 183 2.109126 ATTGGCTTCGAGCGGCTTC 61.109 57.895 2.97 0.00 43.62 3.86
195 200 4.037690 GGCTTCAACATTCATACGCAATC 58.962 43.478 0.00 0.00 0.00 2.67
204 209 2.135139 TCATACGCAATCGCCTGATTC 58.865 47.619 0.00 0.00 42.94 2.52
205 210 1.195448 CATACGCAATCGCCTGATTCC 59.805 52.381 0.00 0.00 42.94 3.01
206 211 0.176910 TACGCAATCGCCTGATTCCA 59.823 50.000 0.00 0.00 42.94 3.53
207 212 0.464373 ACGCAATCGCCTGATTCCAT 60.464 50.000 0.00 0.00 42.94 3.41
300 400 1.410004 TAGTTGGATCTACCCAGGCG 58.590 55.000 0.00 0.00 37.53 5.52
307 407 2.037144 GATCTACCCAGGCGGTTCTAA 58.963 52.381 0.00 0.00 45.36 2.10
336 436 2.429058 CGCCAGCTAGATGCCCAT 59.571 61.111 1.39 0.00 44.23 4.00
343 443 4.627255 GCCAGCTAGATGCCCATACATTAT 60.627 45.833 1.39 0.00 44.23 1.28
385 485 4.851843 ACTGCAAATCCAGATCAGATCAA 58.148 39.130 13.14 0.00 36.67 2.57
465 565 1.605712 GCTTATCCTCAATCGACCGGG 60.606 57.143 6.32 0.00 0.00 5.73
485 585 1.001378 GTCATCAAACAAACAGCGCCT 60.001 47.619 2.29 0.00 0.00 5.52
495 595 2.064573 AACAGCGCCTAAATTGCAAC 57.935 45.000 2.29 0.00 0.00 4.17
515 615 3.531207 CGGGAGCGAGCAGGATCA 61.531 66.667 0.00 0.00 0.00 2.92
520 620 1.473965 GGAGCGAGCAGGATCAAATCA 60.474 52.381 0.00 0.00 0.00 2.57
525 625 2.283617 CGAGCAGGATCAAATCAACGAG 59.716 50.000 0.00 0.00 0.00 4.18
540 640 1.517257 CGAGACGACCCAGCATCAC 60.517 63.158 0.00 0.00 0.00 3.06
721 821 2.817463 GCTATCCTCTGCTGCTCCTCTA 60.817 54.545 0.00 0.00 0.00 2.43
857 957 1.810412 CGAATAGGGCCTGTTAGCACC 60.810 57.143 18.53 2.25 36.58 5.01
900 1003 9.447157 GGCAGCAAATAATAATATCTCTTCTCT 57.553 33.333 0.00 0.00 0.00 3.10
908 1011 9.853555 ATAATAATATCTCTTCTCTTCTGCGTG 57.146 33.333 0.00 0.00 0.00 5.34
909 1012 5.590530 AATATCTCTTCTCTTCTGCGTGT 57.409 39.130 0.00 0.00 0.00 4.49
910 1013 2.999507 TCTCTTCTCTTCTGCGTGTC 57.000 50.000 0.00 0.00 0.00 3.67
911 1014 1.542030 TCTCTTCTCTTCTGCGTGTCC 59.458 52.381 0.00 0.00 0.00 4.02
912 1015 0.603569 TCTTCTCTTCTGCGTGTCCC 59.396 55.000 0.00 0.00 0.00 4.46
913 1016 0.605589 CTTCTCTTCTGCGTGTCCCT 59.394 55.000 0.00 0.00 0.00 4.20
914 1017 0.318441 TTCTCTTCTGCGTGTCCCTG 59.682 55.000 0.00 0.00 0.00 4.45
915 1018 1.739562 CTCTTCTGCGTGTCCCTGC 60.740 63.158 0.00 0.00 0.00 4.85
916 1019 2.164865 CTCTTCTGCGTGTCCCTGCT 62.165 60.000 0.00 0.00 0.00 4.24
917 1020 1.739562 CTTCTGCGTGTCCCTGCTC 60.740 63.158 0.00 0.00 0.00 4.26
930 1033 1.908299 CTGCTCCCAAACCCCCAAC 60.908 63.158 0.00 0.00 0.00 3.77
979 1085 1.304217 TCCTCCGCTCGTCTCCTTT 60.304 57.895 0.00 0.00 0.00 3.11
982 1088 1.645704 CTCCGCTCGTCTCCTTTCGA 61.646 60.000 0.00 0.00 34.88 3.71
1342 1451 3.130227 GGAGGTAATCCGCTCGCT 58.870 61.111 0.00 0.00 38.67 4.93
1348 1457 0.377203 GTAATCCGCTCGCTTTTGGG 59.623 55.000 0.00 0.00 0.00 4.12
1349 1458 0.746563 TAATCCGCTCGCTTTTGGGG 60.747 55.000 0.00 0.00 37.59 4.96
1350 1459 2.764637 AATCCGCTCGCTTTTGGGGT 62.765 55.000 0.00 0.00 37.52 4.95
1351 1460 3.431725 CCGCTCGCTTTTGGGGTC 61.432 66.667 0.00 0.00 0.00 4.46
1352 1461 3.788766 CGCTCGCTTTTGGGGTCG 61.789 66.667 0.00 0.00 0.00 4.79
1353 1462 2.358247 GCTCGCTTTTGGGGTCGA 60.358 61.111 0.00 0.00 0.00 4.20
1354 1463 1.964373 GCTCGCTTTTGGGGTCGAA 60.964 57.895 0.00 0.00 0.00 3.71
1355 1464 1.866925 CTCGCTTTTGGGGTCGAAC 59.133 57.895 0.00 0.00 0.00 3.95
1357 1466 1.894756 CGCTTTTGGGGTCGAACCA 60.895 57.895 23.64 14.18 41.02 3.67
1367 1477 4.460683 TCGAACCAATCCGCCCGG 62.461 66.667 0.00 0.00 0.00 5.73
1399 1509 5.162000 CTTCGTGGAATGAGGCTAATTTC 57.838 43.478 0.00 0.00 30.60 2.17
1417 1527 1.735386 TCGGTTTTGTTGTTGGTCGA 58.265 45.000 0.00 0.00 0.00 4.20
1435 1545 1.991099 GACGGTGTAGCGAGGAGGAC 61.991 65.000 10.67 0.00 0.00 3.85
1504 1614 0.526524 GGTGCGAGATTGACGAGGAG 60.527 60.000 0.00 0.00 0.00 3.69
1561 1671 6.756299 AATGCAAACTTGTTTCCATGTTTT 57.244 29.167 3.74 0.00 42.83 2.43
1568 1685 5.040635 ACTTGTTTCCATGTTTTAAGCACG 58.959 37.500 0.00 0.00 0.00 5.34
1569 1686 4.640789 TGTTTCCATGTTTTAAGCACGT 57.359 36.364 0.00 0.00 0.00 4.49
1573 1690 7.872881 TGTTTCCATGTTTTAAGCACGTATTA 58.127 30.769 0.00 0.00 0.00 0.98
1577 1694 5.955496 CCATGTTTTAAGCACGTATTACGAC 59.045 40.000 22.18 13.26 46.05 4.34
1578 1695 5.176089 TGTTTTAAGCACGTATTACGACG 57.824 39.130 22.18 13.25 46.05 5.12
1584 1701 1.519758 GCACGTATTACGACGATTGGG 59.480 52.381 22.18 3.29 46.05 4.12
1619 1736 6.084326 TCTTAGGTTTCAGTTTCCAATTGC 57.916 37.500 0.00 0.00 0.00 3.56
1636 1753 5.278414 CCAATTGCTGTACAGTCATGTTTCA 60.278 40.000 23.44 7.98 41.01 2.69
1637 1754 5.618056 ATTGCTGTACAGTCATGTTTCAG 57.382 39.130 23.44 0.00 41.01 3.02
1638 1755 4.071961 TGCTGTACAGTCATGTTTCAGT 57.928 40.909 23.44 0.00 41.01 3.41
1639 1756 5.208463 TGCTGTACAGTCATGTTTCAGTA 57.792 39.130 23.44 7.20 41.01 2.74
1640 1757 5.793817 TGCTGTACAGTCATGTTTCAGTAT 58.206 37.500 23.44 0.00 41.01 2.12
1641 1758 6.230472 TGCTGTACAGTCATGTTTCAGTATT 58.770 36.000 23.44 0.00 41.01 1.89
1642 1759 6.368791 TGCTGTACAGTCATGTTTCAGTATTC 59.631 38.462 23.44 1.91 41.01 1.75
1643 1760 6.591834 GCTGTACAGTCATGTTTCAGTATTCT 59.408 38.462 23.44 0.00 41.01 2.40
1644 1761 7.412346 GCTGTACAGTCATGTTTCAGTATTCTG 60.412 40.741 23.44 0.00 41.01 3.02
1645 1762 7.441836 TGTACAGTCATGTTTCAGTATTCTGT 58.558 34.615 0.00 0.00 41.01 3.41
1646 1763 7.931407 TGTACAGTCATGTTTCAGTATTCTGTT 59.069 33.333 0.00 0.00 41.01 3.16
1647 1764 7.194607 ACAGTCATGTTTCAGTATTCTGTTG 57.805 36.000 0.00 0.00 38.47 3.33
1648 1765 6.767902 ACAGTCATGTTTCAGTATTCTGTTGT 59.232 34.615 0.00 0.00 38.47 3.32
1649 1766 7.041780 ACAGTCATGTTTCAGTATTCTGTTGTC 60.042 37.037 0.00 0.00 38.47 3.18
1650 1767 7.172190 CAGTCATGTTTCAGTATTCTGTTGTCT 59.828 37.037 0.00 0.00 41.91 3.41
1651 1768 8.367911 AGTCATGTTTCAGTATTCTGTTGTCTA 58.632 33.333 0.00 0.00 41.91 2.59
1652 1769 8.988934 GTCATGTTTCAGTATTCTGTTGTCTAA 58.011 33.333 0.00 0.00 41.91 2.10
1653 1770 9.725019 TCATGTTTCAGTATTCTGTTGTCTAAT 57.275 29.630 0.00 0.00 41.91 1.73
1654 1771 9.764870 CATGTTTCAGTATTCTGTTGTCTAATG 57.235 33.333 0.00 0.00 41.91 1.90
1655 1772 9.725019 ATGTTTCAGTATTCTGTTGTCTAATGA 57.275 29.630 0.00 0.00 41.91 2.57
1656 1773 9.208022 TGTTTCAGTATTCTGTTGTCTAATGAG 57.792 33.333 0.00 0.00 41.91 2.90
1657 1774 8.660373 GTTTCAGTATTCTGTTGTCTAATGAGG 58.340 37.037 0.00 0.00 41.91 3.86
1658 1775 7.482169 TCAGTATTCTGTTGTCTAATGAGGT 57.518 36.000 0.00 0.00 41.91 3.85
1659 1776 8.589701 TCAGTATTCTGTTGTCTAATGAGGTA 57.410 34.615 0.00 0.00 41.91 3.08
1660 1777 8.687242 TCAGTATTCTGTTGTCTAATGAGGTAG 58.313 37.037 0.00 0.00 41.91 3.18
1661 1778 8.687242 CAGTATTCTGTTGTCTAATGAGGTAGA 58.313 37.037 0.00 0.00 36.97 2.59
1662 1779 8.688151 AGTATTCTGTTGTCTAATGAGGTAGAC 58.312 37.037 5.58 5.58 46.88 2.59
1663 1780 7.726033 ATTCTGTTGTCTAATGAGGTAGACT 57.274 36.000 12.27 0.00 46.84 3.24
1664 1781 7.540474 TTCTGTTGTCTAATGAGGTAGACTT 57.460 36.000 12.27 0.00 46.84 3.01
1665 1782 6.925211 TCTGTTGTCTAATGAGGTAGACTTG 58.075 40.000 12.27 2.71 46.84 3.16
1666 1783 6.037786 TGTTGTCTAATGAGGTAGACTTGG 57.962 41.667 12.27 0.00 46.84 3.61
1667 1784 5.778241 TGTTGTCTAATGAGGTAGACTTGGA 59.222 40.000 12.27 0.00 46.84 3.53
1668 1785 6.440647 TGTTGTCTAATGAGGTAGACTTGGAT 59.559 38.462 12.27 0.00 46.84 3.41
1669 1786 6.471233 TGTCTAATGAGGTAGACTTGGATG 57.529 41.667 12.27 0.00 46.84 3.51
1670 1787 5.958380 TGTCTAATGAGGTAGACTTGGATGT 59.042 40.000 12.27 0.00 46.84 3.06
1671 1788 6.440647 TGTCTAATGAGGTAGACTTGGATGTT 59.559 38.462 12.27 0.00 46.84 2.71
1672 1789 7.038302 TGTCTAATGAGGTAGACTTGGATGTTT 60.038 37.037 12.27 0.00 46.84 2.83
1673 1790 7.278868 GTCTAATGAGGTAGACTTGGATGTTTG 59.721 40.741 5.34 0.00 44.45 2.93
1674 1791 4.286297 TGAGGTAGACTTGGATGTTTGG 57.714 45.455 0.00 0.00 0.00 3.28
1675 1792 3.009033 TGAGGTAGACTTGGATGTTTGGG 59.991 47.826 0.00 0.00 0.00 4.12
1676 1793 2.986728 AGGTAGACTTGGATGTTTGGGT 59.013 45.455 0.00 0.00 0.00 4.51
1677 1794 4.172807 AGGTAGACTTGGATGTTTGGGTA 58.827 43.478 0.00 0.00 0.00 3.69
1678 1795 4.788617 AGGTAGACTTGGATGTTTGGGTAT 59.211 41.667 0.00 0.00 0.00 2.73
1679 1796 5.253096 AGGTAGACTTGGATGTTTGGGTATT 59.747 40.000 0.00 0.00 0.00 1.89
1680 1797 5.949952 GGTAGACTTGGATGTTTGGGTATTT 59.050 40.000 0.00 0.00 0.00 1.40
1681 1798 6.436218 GGTAGACTTGGATGTTTGGGTATTTT 59.564 38.462 0.00 0.00 0.00 1.82
1682 1799 6.345096 AGACTTGGATGTTTGGGTATTTTG 57.655 37.500 0.00 0.00 0.00 2.44
1683 1800 4.893608 ACTTGGATGTTTGGGTATTTTGC 58.106 39.130 0.00 0.00 0.00 3.68
1684 1801 3.584406 TGGATGTTTGGGTATTTTGCG 57.416 42.857 0.00 0.00 0.00 4.85
1685 1802 2.267426 GGATGTTTGGGTATTTTGCGC 58.733 47.619 0.00 0.00 0.00 6.09
1686 1803 1.917303 GATGTTTGGGTATTTTGCGCG 59.083 47.619 0.00 0.00 0.00 6.86
1687 1804 0.664767 TGTTTGGGTATTTTGCGCGC 60.665 50.000 27.26 27.26 0.00 6.86
1688 1805 1.442857 TTTGGGTATTTTGCGCGCG 60.443 52.632 28.44 28.44 0.00 6.86
1689 1806 2.804368 TTTGGGTATTTTGCGCGCGG 62.804 55.000 33.06 13.66 0.00 6.46
1690 1807 3.806422 GGGTATTTTGCGCGCGGT 61.806 61.111 33.06 14.29 0.00 5.68
1691 1808 2.575789 GGTATTTTGCGCGCGGTG 60.576 61.111 33.06 3.70 0.00 4.94
1692 1809 3.237538 GTATTTTGCGCGCGGTGC 61.238 61.111 33.06 15.91 39.75 5.01
1693 1810 3.427425 TATTTTGCGCGCGGTGCT 61.427 55.556 33.06 12.25 43.27 4.40
1694 1811 3.659429 TATTTTGCGCGCGGTGCTG 62.659 57.895 33.06 1.90 43.27 4.41
1705 1822 4.357279 GGTGCTGCTCTGCCCCTT 62.357 66.667 0.00 0.00 0.00 3.95
1706 1823 2.749441 GTGCTGCTCTGCCCCTTC 60.749 66.667 0.00 0.00 0.00 3.46
1707 1824 2.932194 TGCTGCTCTGCCCCTTCT 60.932 61.111 0.00 0.00 0.00 2.85
1708 1825 2.438075 GCTGCTCTGCCCCTTCTG 60.438 66.667 0.00 0.00 0.00 3.02
1709 1826 2.271497 CTGCTCTGCCCCTTCTGG 59.729 66.667 0.00 0.00 0.00 3.86
1710 1827 2.530151 TGCTCTGCCCCTTCTGGT 60.530 61.111 0.00 0.00 0.00 4.00
1711 1828 2.045536 GCTCTGCCCCTTCTGGTG 60.046 66.667 0.00 0.00 0.00 4.17
1712 1829 2.673523 CTCTGCCCCTTCTGGTGG 59.326 66.667 0.00 0.00 0.00 4.61
1713 1830 1.920325 CTCTGCCCCTTCTGGTGGA 60.920 63.158 0.00 0.00 0.00 4.02
1714 1831 1.908340 CTCTGCCCCTTCTGGTGGAG 61.908 65.000 0.00 0.00 0.00 3.86
1715 1832 2.935481 TGCCCCTTCTGGTGGAGG 60.935 66.667 0.00 0.00 0.00 4.30
1716 1833 2.610859 GCCCCTTCTGGTGGAGGA 60.611 66.667 0.00 0.00 0.00 3.71
1717 1834 2.231380 GCCCCTTCTGGTGGAGGAA 61.231 63.158 0.00 0.00 0.00 3.36
1718 1835 1.994463 CCCCTTCTGGTGGAGGAAG 59.006 63.158 0.00 0.00 38.76 3.46
1722 1839 2.191128 CTTCTGGTGGAGGAAGGTTG 57.809 55.000 0.00 0.00 36.32 3.77
1723 1840 1.699634 CTTCTGGTGGAGGAAGGTTGA 59.300 52.381 0.00 0.00 36.32 3.18
1724 1841 1.352083 TCTGGTGGAGGAAGGTTGAG 58.648 55.000 0.00 0.00 0.00 3.02
1725 1842 1.059913 CTGGTGGAGGAAGGTTGAGT 58.940 55.000 0.00 0.00 0.00 3.41
1726 1843 1.421646 CTGGTGGAGGAAGGTTGAGTT 59.578 52.381 0.00 0.00 0.00 3.01
1727 1844 1.142870 TGGTGGAGGAAGGTTGAGTTG 59.857 52.381 0.00 0.00 0.00 3.16
1728 1845 1.545651 GGTGGAGGAAGGTTGAGTTGG 60.546 57.143 0.00 0.00 0.00 3.77
1729 1846 1.143073 GTGGAGGAAGGTTGAGTTGGT 59.857 52.381 0.00 0.00 0.00 3.67
1730 1847 2.370849 GTGGAGGAAGGTTGAGTTGGTA 59.629 50.000 0.00 0.00 0.00 3.25
1731 1848 2.637872 TGGAGGAAGGTTGAGTTGGTAG 59.362 50.000 0.00 0.00 0.00 3.18
1732 1849 2.027100 GGAGGAAGGTTGAGTTGGTAGG 60.027 54.545 0.00 0.00 0.00 3.18
1733 1850 2.638363 GAGGAAGGTTGAGTTGGTAGGT 59.362 50.000 0.00 0.00 0.00 3.08
1734 1851 2.372172 AGGAAGGTTGAGTTGGTAGGTG 59.628 50.000 0.00 0.00 0.00 4.00
1735 1852 2.105993 GGAAGGTTGAGTTGGTAGGTGT 59.894 50.000 0.00 0.00 0.00 4.16
1736 1853 3.400255 GAAGGTTGAGTTGGTAGGTGTC 58.600 50.000 0.00 0.00 0.00 3.67
1737 1854 1.697982 AGGTTGAGTTGGTAGGTGTCC 59.302 52.381 0.00 0.00 0.00 4.02
1738 1855 1.607251 GGTTGAGTTGGTAGGTGTCCG 60.607 57.143 0.00 0.00 0.00 4.79
1739 1856 1.069668 GTTGAGTTGGTAGGTGTCCGT 59.930 52.381 0.00 0.00 0.00 4.69
1740 1857 1.416243 TGAGTTGGTAGGTGTCCGTT 58.584 50.000 0.00 0.00 0.00 4.44
1741 1858 1.069513 TGAGTTGGTAGGTGTCCGTTG 59.930 52.381 0.00 0.00 0.00 4.10
1742 1859 0.395312 AGTTGGTAGGTGTCCGTTGG 59.605 55.000 0.00 0.00 0.00 3.77
1743 1860 0.107268 GTTGGTAGGTGTCCGTTGGT 59.893 55.000 0.00 0.00 0.00 3.67
1744 1861 0.838608 TTGGTAGGTGTCCGTTGGTT 59.161 50.000 0.00 0.00 0.00 3.67
1745 1862 0.838608 TGGTAGGTGTCCGTTGGTTT 59.161 50.000 0.00 0.00 0.00 3.27
1746 1863 1.212441 TGGTAGGTGTCCGTTGGTTTT 59.788 47.619 0.00 0.00 0.00 2.43
1747 1864 1.605232 GGTAGGTGTCCGTTGGTTTTG 59.395 52.381 0.00 0.00 0.00 2.44
1748 1865 2.291365 GTAGGTGTCCGTTGGTTTTGT 58.709 47.619 0.00 0.00 0.00 2.83
1749 1866 1.842052 AGGTGTCCGTTGGTTTTGTT 58.158 45.000 0.00 0.00 0.00 2.83
1750 1867 2.172679 AGGTGTCCGTTGGTTTTGTTT 58.827 42.857 0.00 0.00 0.00 2.83
1751 1868 2.094442 AGGTGTCCGTTGGTTTTGTTTG 60.094 45.455 0.00 0.00 0.00 2.93
1752 1869 2.094649 GGTGTCCGTTGGTTTTGTTTGA 60.095 45.455 0.00 0.00 0.00 2.69
1753 1870 3.576648 GTGTCCGTTGGTTTTGTTTGAA 58.423 40.909 0.00 0.00 0.00 2.69
1754 1871 3.365520 GTGTCCGTTGGTTTTGTTTGAAC 59.634 43.478 0.00 0.00 0.00 3.18
1755 1872 3.256136 TGTCCGTTGGTTTTGTTTGAACT 59.744 39.130 0.00 0.00 0.00 3.01
1756 1873 4.239304 GTCCGTTGGTTTTGTTTGAACTT 58.761 39.130 0.00 0.00 0.00 2.66
1757 1874 4.687018 GTCCGTTGGTTTTGTTTGAACTTT 59.313 37.500 0.00 0.00 0.00 2.66
1758 1875 4.686554 TCCGTTGGTTTTGTTTGAACTTTG 59.313 37.500 0.00 0.00 0.00 2.77
1759 1876 4.449405 CCGTTGGTTTTGTTTGAACTTTGT 59.551 37.500 0.00 0.00 0.00 2.83
1760 1877 5.634020 CCGTTGGTTTTGTTTGAACTTTGTA 59.366 36.000 0.00 0.00 0.00 2.41
1761 1878 6.145696 CCGTTGGTTTTGTTTGAACTTTGTAA 59.854 34.615 0.00 0.00 0.00 2.41
1762 1879 7.148557 CCGTTGGTTTTGTTTGAACTTTGTAAT 60.149 33.333 0.00 0.00 0.00 1.89
1763 1880 7.895767 CGTTGGTTTTGTTTGAACTTTGTAATC 59.104 33.333 0.00 0.00 0.00 1.75
1764 1881 8.713271 GTTGGTTTTGTTTGAACTTTGTAATCA 58.287 29.630 0.00 0.00 0.00 2.57
1765 1882 8.833231 TGGTTTTGTTTGAACTTTGTAATCAA 57.167 26.923 0.00 0.00 0.00 2.57
1766 1883 9.273016 TGGTTTTGTTTGAACTTTGTAATCAAA 57.727 25.926 0.00 0.00 39.89 2.69
1774 1891 9.462174 TTTGAACTTTGTAATCAAACTGCTATG 57.538 29.630 0.00 0.00 37.95 2.23
1775 1892 7.592938 TGAACTTTGTAATCAAACTGCTATGG 58.407 34.615 0.00 0.00 38.44 2.74
1776 1893 7.230510 TGAACTTTGTAATCAAACTGCTATGGT 59.769 33.333 0.00 0.00 38.44 3.55
1777 1894 7.524717 ACTTTGTAATCAAACTGCTATGGTT 57.475 32.000 0.00 0.00 38.44 3.67
1778 1895 7.951591 ACTTTGTAATCAAACTGCTATGGTTT 58.048 30.769 0.00 0.00 38.44 3.27
1779 1896 8.421002 ACTTTGTAATCAAACTGCTATGGTTTT 58.579 29.630 0.00 0.00 38.44 2.43
1780 1897 8.810652 TTTGTAATCAAACTGCTATGGTTTTC 57.189 30.769 0.00 0.00 38.44 2.29
1781 1898 7.759489 TGTAATCAAACTGCTATGGTTTTCT 57.241 32.000 0.00 0.00 35.09 2.52
1782 1899 8.177119 TGTAATCAAACTGCTATGGTTTTCTT 57.823 30.769 0.00 0.00 35.09 2.52
1783 1900 9.290988 TGTAATCAAACTGCTATGGTTTTCTTA 57.709 29.630 0.00 0.00 35.09 2.10
1794 1911 9.796120 TGCTATGGTTTTCTTAATAAAAATCGG 57.204 29.630 0.77 0.00 30.87 4.18
1798 1915 9.869757 ATGGTTTTCTTAATAAAAATCGGAAGG 57.130 29.630 0.77 0.00 30.87 3.46
1799 1916 8.308207 TGGTTTTCTTAATAAAAATCGGAAGGG 58.692 33.333 0.77 0.00 30.87 3.95
1800 1917 7.762615 GGTTTTCTTAATAAAAATCGGAAGGGG 59.237 37.037 0.77 0.00 30.53 4.79
1801 1918 8.525316 GTTTTCTTAATAAAAATCGGAAGGGGA 58.475 33.333 0.77 0.00 30.53 4.81
1802 1919 7.875327 TTCTTAATAAAAATCGGAAGGGGAG 57.125 36.000 0.00 0.00 0.00 4.30
1803 1920 7.202972 TCTTAATAAAAATCGGAAGGGGAGA 57.797 36.000 0.00 0.00 0.00 3.71
1804 1921 7.280356 TCTTAATAAAAATCGGAAGGGGAGAG 58.720 38.462 0.00 0.00 0.00 3.20
1805 1922 2.808906 AAAAATCGGAAGGGGAGAGG 57.191 50.000 0.00 0.00 0.00 3.69
1806 1923 0.256177 AAAATCGGAAGGGGAGAGGC 59.744 55.000 0.00 0.00 0.00 4.70
1807 1924 1.636769 AAATCGGAAGGGGAGAGGCC 61.637 60.000 0.00 0.00 0.00 5.19
1808 1925 2.553438 AATCGGAAGGGGAGAGGCCT 62.553 60.000 3.86 3.86 36.66 5.19
1809 1926 2.553438 ATCGGAAGGGGAGAGGCCTT 62.553 60.000 6.77 0.00 36.66 4.35
1810 1927 2.736826 CGGAAGGGGAGAGGCCTTC 61.737 68.421 6.77 6.55 39.15 3.46
1811 1928 1.307430 GGAAGGGGAGAGGCCTTCT 60.307 63.158 6.77 5.42 39.62 2.85
1812 1929 0.916845 GGAAGGGGAGAGGCCTTCTT 60.917 60.000 6.77 6.34 39.62 2.52
1813 1930 0.995803 GAAGGGGAGAGGCCTTCTTT 59.004 55.000 6.77 0.00 35.87 2.52
1814 1931 1.356059 GAAGGGGAGAGGCCTTCTTTT 59.644 52.381 6.77 0.00 35.87 2.27
1815 1932 2.361085 AGGGGAGAGGCCTTCTTTTA 57.639 50.000 6.77 0.00 35.87 1.52
1816 1933 2.865199 AGGGGAGAGGCCTTCTTTTAT 58.135 47.619 6.77 0.00 35.87 1.40
1817 1934 2.780592 AGGGGAGAGGCCTTCTTTTATC 59.219 50.000 6.77 0.00 35.87 1.75
1818 1935 2.509964 GGGGAGAGGCCTTCTTTTATCA 59.490 50.000 6.77 0.00 35.87 2.15
1819 1936 3.053619 GGGGAGAGGCCTTCTTTTATCAA 60.054 47.826 6.77 0.00 35.87 2.57
1820 1937 4.569865 GGGGAGAGGCCTTCTTTTATCAAA 60.570 45.833 6.77 0.00 35.87 2.69
1821 1938 5.016831 GGGAGAGGCCTTCTTTTATCAAAA 58.983 41.667 6.77 0.00 35.87 2.44
1822 1939 5.480422 GGGAGAGGCCTTCTTTTATCAAAAA 59.520 40.000 6.77 0.00 35.87 1.94
1866 1983 9.241919 AGTTGAATAACATGATTAACACATCCA 57.758 29.630 0.00 0.00 39.30 3.41
1875 1992 9.905713 ACATGATTAACACATCCATTTACTAGT 57.094 29.630 0.00 0.00 0.00 2.57
1878 1995 9.173021 TGATTAACACATCCATTTACTAGTTGG 57.827 33.333 0.00 2.76 0.00 3.77
1882 1999 4.576463 CACATCCATTTACTAGTTGGGAGC 59.424 45.833 11.37 0.00 0.00 4.70
1885 2002 3.199946 TCCATTTACTAGTTGGGAGCCAG 59.800 47.826 11.37 0.00 33.81 4.85
1889 2006 4.986054 TTACTAGTTGGGAGCCAGAAAA 57.014 40.909 0.00 0.00 33.81 2.29
1916 2036 4.099113 TCAAGTGAATGTGTGAATGCCAAA 59.901 37.500 0.00 0.00 0.00 3.28
1933 2089 4.057432 GCCAAATGCATGTTGTTACAAGT 58.943 39.130 0.00 0.00 40.77 3.16
1946 2102 6.151985 TGTTGTTACAAGTTCATGTTTGTCCT 59.848 34.615 13.46 0.00 38.41 3.85
2005 2161 1.747355 CTGTGATCCTTTGGTGATGGC 59.253 52.381 0.00 0.00 0.00 4.40
2011 2167 5.645497 GTGATCCTTTGGTGATGGCTATATC 59.355 44.000 0.00 0.00 0.00 1.63
2020 2176 4.322725 GGTGATGGCTATATCGGTTCATGA 60.323 45.833 0.00 0.00 0.00 3.07
2029 2185 7.072030 GCTATATCGGTTCATGAACATTGTTC 58.928 38.462 33.42 20.27 42.85 3.18
2058 2214 8.150296 TGTATATCTCATTTGGACTGTATGGTG 58.850 37.037 0.00 0.00 0.00 4.17
2079 2235 5.578776 GTGTGCTACTACACTTTTGCTTTT 58.421 37.500 0.00 0.00 45.70 2.27
2083 2239 6.530181 GTGCTACTACACTTTTGCTTTTGTTT 59.470 34.615 0.00 0.00 37.58 2.83
2084 2240 6.529829 TGCTACTACACTTTTGCTTTTGTTTG 59.470 34.615 0.00 0.00 0.00 2.93
2090 2247 5.138788 CACTTTTGCTTTTGTTTGTGTGTG 58.861 37.500 0.00 0.00 0.00 3.82
2106 2263 4.037803 TGTGTGTGTCAGGGATTTGATTTG 59.962 41.667 0.00 0.00 0.00 2.32
2114 2271 7.917505 GTGTCAGGGATTTGATTTGTTGATATC 59.082 37.037 0.00 0.00 0.00 1.63
2146 2303 9.802039 TTTAGAAGGTTTATTATGTGAGGTGTT 57.198 29.630 0.00 0.00 0.00 3.32
2166 2323 7.429636 GTGTTCTGTAACAGCCTTATGTTTA 57.570 36.000 0.00 0.00 46.06 2.01
2221 2388 8.672815 AGCTAATCTGAAGAGAAAAATTGCTAC 58.327 33.333 0.00 0.00 0.00 3.58
2227 2394 7.172190 TCTGAAGAGAAAAATTGCTACTGAGTG 59.828 37.037 0.00 0.00 0.00 3.51
2247 2414 4.997395 AGTGCAGTTTCAGTGTTATGGTAG 59.003 41.667 0.00 0.00 0.00 3.18
2323 2490 9.412460 TCAAGAGATATTTTGCTGTTGGATATT 57.588 29.630 0.00 0.00 36.42 1.28
2326 2493 9.638176 AGAGATATTTTGCTGTTGGATATTTCT 57.362 29.630 0.00 0.00 0.00 2.52
2327 2494 9.674824 GAGATATTTTGCTGTTGGATATTTCTG 57.325 33.333 0.00 0.00 0.00 3.02
2329 2496 6.610075 ATTTTGCTGTTGGATATTTCTGGT 57.390 33.333 0.00 0.00 0.00 4.00
2330 2497 5.389859 TTTGCTGTTGGATATTTCTGGTG 57.610 39.130 0.00 0.00 0.00 4.17
2331 2498 3.355378 TGCTGTTGGATATTTCTGGTGG 58.645 45.455 0.00 0.00 0.00 4.61
2332 2499 3.245229 TGCTGTTGGATATTTCTGGTGGT 60.245 43.478 0.00 0.00 0.00 4.16
2341 2508 8.837099 TGGATATTTCTGGTGGTTTTCATAAT 57.163 30.769 0.00 0.00 0.00 1.28
2342 2509 8.694540 TGGATATTTCTGGTGGTTTTCATAATG 58.305 33.333 0.00 0.00 0.00 1.90
2343 2510 8.912988 GGATATTTCTGGTGGTTTTCATAATGA 58.087 33.333 0.00 0.00 0.00 2.57
2395 2562 2.430694 GGGTGTTCTTTTTGTGCTTCCT 59.569 45.455 0.00 0.00 0.00 3.36
2463 2630 7.201644 GCTTACTGCTTATGTGCTCTTTATTCA 60.202 37.037 0.00 0.00 38.95 2.57
2531 2698 7.399634 AGACCATAGTTTCCGATTTTCCTTAA 58.600 34.615 0.00 0.00 0.00 1.85
2561 2728 7.544622 AGAATTGGTCAATCAGATTTGTGATG 58.455 34.615 0.00 0.00 37.24 3.07
2571 2738 3.952323 CAGATTTGTGATGCCTGATTCCT 59.048 43.478 0.00 0.00 0.00 3.36
2576 2743 2.840038 TGTGATGCCTGATTCCTAGTGT 59.160 45.455 0.00 0.00 0.00 3.55
2598 2765 6.987404 GTGTCTATTCCCTTCCAGTTATTCTC 59.013 42.308 0.00 0.00 0.00 2.87
2600 2767 7.348274 TGTCTATTCCCTTCCAGTTATTCTCAT 59.652 37.037 0.00 0.00 0.00 2.90
2601 2768 7.875554 GTCTATTCCCTTCCAGTTATTCTCATC 59.124 40.741 0.00 0.00 0.00 2.92
2653 2820 8.836268 ATCAGTTTTGTGCAAATGATGTATTT 57.164 26.923 10.95 0.00 39.55 1.40
2661 2828 6.630015 GTGCAAATGATGTATTTATTGCACG 58.370 36.000 20.96 0.00 44.47 5.34
2712 2949 7.494625 TGAATGAGGAAACCTTATTTAGTAGCG 59.505 37.037 8.73 0.00 39.45 4.26
2715 2952 5.681639 AGGAAACCTTATTTAGTAGCGCAT 58.318 37.500 11.47 0.00 0.00 4.73
2717 2955 5.296035 GGAAACCTTATTTAGTAGCGCATGT 59.704 40.000 11.47 0.00 0.00 3.21
2754 2992 4.749245 ATCAGTTTTAAGGTTGCAGTCG 57.251 40.909 0.00 0.00 0.00 4.18
2756 2994 4.695396 TCAGTTTTAAGGTTGCAGTCGTA 58.305 39.130 0.00 0.00 0.00 3.43
2757 2995 4.748102 TCAGTTTTAAGGTTGCAGTCGTAG 59.252 41.667 0.00 0.00 0.00 3.51
2793 3031 7.199167 TGGAAAGACTGATCCTTCAATCATA 57.801 36.000 8.57 0.00 35.21 2.15
2800 3038 7.014038 AGACTGATCCTTCAATCATAATTTGCC 59.986 37.037 0.00 0.00 35.21 4.52
2802 3040 7.343833 ACTGATCCTTCAATCATAATTTGCCTT 59.656 33.333 0.00 0.00 35.21 4.35
2805 3043 4.812626 CCTTCAATCATAATTTGCCTTGCC 59.187 41.667 0.00 0.00 0.00 4.52
2806 3044 4.044336 TCAATCATAATTTGCCTTGCCG 57.956 40.909 0.00 0.00 0.00 5.69
2841 3079 5.836024 TTAATACCACCCTCAGACTGTTT 57.164 39.130 1.59 0.00 0.00 2.83
2842 3080 3.703001 ATACCACCCTCAGACTGTTTG 57.297 47.619 1.59 0.00 0.00 2.93
2849 3087 2.290260 CCCTCAGACTGTTTGTATGCCA 60.290 50.000 1.59 0.00 37.76 4.92
2856 3094 3.758554 GACTGTTTGTATGCCACCTGAAT 59.241 43.478 0.00 0.00 0.00 2.57
2859 3097 2.036958 TTGTATGCCACCTGAATCGG 57.963 50.000 0.00 0.00 0.00 4.18
2862 3100 2.159014 TGTATGCCACCTGAATCGGTAC 60.159 50.000 0.00 0.00 34.94 3.34
2864 3102 0.249120 TGCCACCTGAATCGGTACTG 59.751 55.000 0.00 0.00 34.94 2.74
2865 3103 0.249398 GCCACCTGAATCGGTACTGT 59.751 55.000 0.64 0.00 34.94 3.55
2873 3111 5.477984 ACCTGAATCGGTACTGTTACAACTA 59.522 40.000 0.64 0.00 34.94 2.24
2874 3112 6.154021 ACCTGAATCGGTACTGTTACAACTAT 59.846 38.462 0.64 0.00 34.94 2.12
2875 3113 7.340232 ACCTGAATCGGTACTGTTACAACTATA 59.660 37.037 0.64 0.00 34.94 1.31
2876 3114 8.192774 CCTGAATCGGTACTGTTACAACTATAA 58.807 37.037 0.64 0.00 0.00 0.98
2877 3115 9.745880 CTGAATCGGTACTGTTACAACTATAAT 57.254 33.333 0.64 0.00 0.00 1.28
2881 3119 9.745880 ATCGGTACTGTTACAACTATAATTGAG 57.254 33.333 0.04 0.00 33.57 3.02
2882 3120 8.742777 TCGGTACTGTTACAACTATAATTGAGT 58.257 33.333 0.04 0.00 33.57 3.41
2919 3157 8.418597 TCAGACCTGAACTATACATATTACCC 57.581 38.462 0.00 0.00 36.53 3.69
2923 3161 8.506196 ACCTGAACTATACATATTACCCATGT 57.494 34.615 0.00 0.00 39.82 3.21
2924 3162 8.375506 ACCTGAACTATACATATTACCCATGTG 58.624 37.037 0.00 0.00 37.22 3.21
2925 3163 7.824289 CCTGAACTATACATATTACCCATGTGG 59.176 40.741 0.00 0.00 37.22 4.17
2961 3199 4.931601 TCTCCATCAAGAACATTTCTCACG 59.068 41.667 0.00 0.00 39.61 4.35
2964 3202 5.179368 TCCATCAAGAACATTTCTCACGAAC 59.821 40.000 0.00 0.00 39.61 3.95
2980 3219 3.078837 ACGAACGTGATAATTTTGGCCT 58.921 40.909 3.32 0.00 0.00 5.19
2983 3222 2.099405 ACGTGATAATTTTGGCCTGGG 58.901 47.619 3.32 0.00 0.00 4.45
2995 3234 1.203162 TGGCCTGGGTTTTCATCATGT 60.203 47.619 3.32 0.00 0.00 3.21
3018 3257 0.239347 CCTTCTTTGCAGCCGAGTTG 59.761 55.000 0.00 0.00 0.00 3.16
3033 3272 2.605818 CGAGTTGTTTGTGAACGGAGAA 59.394 45.455 0.00 0.00 38.65 2.87
3167 3406 1.644786 GCCTACCAACGGTGACATGC 61.645 60.000 0.00 0.00 36.19 4.06
3273 3515 1.541147 GTCTTTGCTGCATTGTAGCCA 59.459 47.619 21.72 10.11 40.42 4.75
3302 3544 7.255590 CCATATCTGGGCGTTTATTTTCTTCAT 60.256 37.037 0.00 0.00 39.04 2.57
3303 3545 5.975693 TCTGGGCGTTTATTTTCTTCATT 57.024 34.783 0.00 0.00 0.00 2.57
3304 3546 5.949735 TCTGGGCGTTTATTTTCTTCATTC 58.050 37.500 0.00 0.00 0.00 2.67
3305 3547 5.475220 TCTGGGCGTTTATTTTCTTCATTCA 59.525 36.000 0.00 0.00 0.00 2.57
3338 3580 7.713734 AGGTTAAGAACTGCATGTACTACTA 57.286 36.000 0.00 0.00 0.00 1.82
3385 3635 1.791103 TTGGTTTGCGGCGGAAAGAG 61.791 55.000 26.70 0.00 0.00 2.85
3386 3636 2.258726 GGTTTGCGGCGGAAAGAGT 61.259 57.895 26.70 0.00 0.00 3.24
3391 3641 1.153353 TGCGGCGGAAAGAGTAAAAG 58.847 50.000 9.78 0.00 0.00 2.27
3393 3643 1.802365 GCGGCGGAAAGAGTAAAAGAA 59.198 47.619 9.78 0.00 0.00 2.52
3394 3644 2.159693 GCGGCGGAAAGAGTAAAAGAAG 60.160 50.000 9.78 0.00 0.00 2.85
3396 3646 3.497262 CGGCGGAAAGAGTAAAAGAAGTT 59.503 43.478 0.00 0.00 0.00 2.66
3397 3647 4.610680 CGGCGGAAAGAGTAAAAGAAGTTG 60.611 45.833 0.00 0.00 0.00 3.16
3399 3649 5.467735 GGCGGAAAGAGTAAAAGAAGTTGTA 59.532 40.000 0.00 0.00 0.00 2.41
3400 3650 6.017687 GGCGGAAAGAGTAAAAGAAGTTGTAA 60.018 38.462 0.00 0.00 0.00 2.41
3402 3652 7.042254 GCGGAAAGAGTAAAAGAAGTTGTAAGA 60.042 37.037 0.00 0.00 0.00 2.10
3403 3653 8.488764 CGGAAAGAGTAAAAGAAGTTGTAAGAG 58.511 37.037 0.00 0.00 0.00 2.85
3404 3654 9.543783 GGAAAGAGTAAAAGAAGTTGTAAGAGA 57.456 33.333 0.00 0.00 0.00 3.10
3406 3656 8.596271 AAGAGTAAAAGAAGTTGTAAGAGAGC 57.404 34.615 0.00 0.00 0.00 4.09
3408 3658 8.371699 AGAGTAAAAGAAGTTGTAAGAGAGCAT 58.628 33.333 0.00 0.00 0.00 3.79
3409 3659 8.910351 AGTAAAAGAAGTTGTAAGAGAGCATT 57.090 30.769 0.00 0.00 0.00 3.56
3414 3664 9.952188 AAAGAAGTTGTAAGAGAGCATTTAAAC 57.048 29.630 0.00 0.00 0.00 2.01
3415 3665 8.910351 AGAAGTTGTAAGAGAGCATTTAAACT 57.090 30.769 0.00 0.00 0.00 2.66
3424 3691 7.992754 AGAGAGCATTTAAACTTGATGAACT 57.007 32.000 0.00 0.00 0.00 3.01
3429 3696 6.944862 AGCATTTAAACTTGATGAACTCTCCT 59.055 34.615 0.00 0.00 0.00 3.69
3433 3700 4.363991 AACTTGATGAACTCTCCTTGCT 57.636 40.909 0.00 0.00 0.00 3.91
3441 3708 3.389329 TGAACTCTCCTTGCTCTGTTTCT 59.611 43.478 0.00 0.00 0.00 2.52
3444 3711 1.417517 TCTCCTTGCTCTGTTTCTGCA 59.582 47.619 0.00 0.00 34.69 4.41
3447 3714 0.236711 CTTGCTCTGTTTCTGCACCG 59.763 55.000 0.00 0.00 36.37 4.94
3450 3721 0.663153 GCTCTGTTTCTGCACCGTTT 59.337 50.000 0.00 0.00 0.00 3.60
3452 3723 1.670811 CTCTGTTTCTGCACCGTTTGT 59.329 47.619 0.00 0.00 0.00 2.83
3455 3726 0.030235 GTTTCTGCACCGTTTGTCCC 59.970 55.000 0.00 0.00 0.00 4.46
3459 3730 3.670377 GCACCGTTTGTCCCCTGC 61.670 66.667 0.00 0.00 0.00 4.85
3463 3735 1.528309 CCGTTTGTCCCCTGCAGTT 60.528 57.895 13.81 0.00 0.00 3.16
3467 3739 1.145571 TTTGTCCCCTGCAGTTACCT 58.854 50.000 13.81 0.00 0.00 3.08
3485 3757 3.644884 CCTGGCGTAGGTAGTATTGAG 57.355 52.381 0.27 0.00 42.00 3.02
3486 3758 2.288273 CCTGGCGTAGGTAGTATTGAGC 60.288 54.545 0.27 0.00 42.00 4.26
3487 3759 2.623889 CTGGCGTAGGTAGTATTGAGCT 59.376 50.000 0.00 0.00 0.00 4.09
3488 3760 2.621998 TGGCGTAGGTAGTATTGAGCTC 59.378 50.000 6.82 6.82 0.00 4.09
3489 3761 2.621998 GGCGTAGGTAGTATTGAGCTCA 59.378 50.000 13.74 13.74 0.00 4.26
3490 3762 3.550436 GGCGTAGGTAGTATTGAGCTCAC 60.550 52.174 18.03 5.16 0.00 3.51
3491 3763 3.550436 GCGTAGGTAGTATTGAGCTCACC 60.550 52.174 18.03 13.38 0.00 4.02
3492 3764 3.303857 CGTAGGTAGTATTGAGCTCACCG 60.304 52.174 18.03 0.00 0.00 4.94
3493 3765 2.736347 AGGTAGTATTGAGCTCACCGT 58.264 47.619 18.03 8.30 0.00 4.83
3494 3766 3.097614 AGGTAGTATTGAGCTCACCGTT 58.902 45.455 18.03 5.57 0.00 4.44
3495 3767 3.514309 AGGTAGTATTGAGCTCACCGTTT 59.486 43.478 18.03 4.06 0.00 3.60
3496 3768 3.864003 GGTAGTATTGAGCTCACCGTTTC 59.136 47.826 18.03 6.25 0.00 2.78
3497 3769 3.963428 AGTATTGAGCTCACCGTTTCT 57.037 42.857 18.03 6.56 0.00 2.52
3498 3770 3.851098 AGTATTGAGCTCACCGTTTCTC 58.149 45.455 18.03 1.65 0.00 2.87
3499 3771 3.511934 AGTATTGAGCTCACCGTTTCTCT 59.488 43.478 18.03 3.95 0.00 3.10
3500 3772 2.154854 TTGAGCTCACCGTTTCTCTG 57.845 50.000 18.03 0.00 0.00 3.35
3501 3773 1.328279 TGAGCTCACCGTTTCTCTGA 58.672 50.000 13.74 0.00 0.00 3.27
3502 3774 1.686587 TGAGCTCACCGTTTCTCTGAA 59.313 47.619 13.74 0.00 0.00 3.02
3503 3775 2.288457 TGAGCTCACCGTTTCTCTGAAG 60.288 50.000 13.74 0.00 0.00 3.02
3504 3776 0.793250 GCTCACCGTTTCTCTGAAGC 59.207 55.000 0.00 0.00 0.00 3.86
3505 3777 1.063806 CTCACCGTTTCTCTGAAGCG 58.936 55.000 9.05 9.05 0.00 4.68
3506 3778 0.671796 TCACCGTTTCTCTGAAGCGA 59.328 50.000 15.83 0.00 0.00 4.93
3507 3779 1.063806 CACCGTTTCTCTGAAGCGAG 58.936 55.000 15.83 9.62 0.00 5.03
3508 3780 0.674534 ACCGTTTCTCTGAAGCGAGT 59.325 50.000 15.83 10.12 32.83 4.18
3509 3781 1.884579 ACCGTTTCTCTGAAGCGAGTA 59.115 47.619 15.83 0.00 32.83 2.59
3538 3810 4.219288 AGGGTGCTCATTTTCAGAAATCAC 59.781 41.667 0.00 1.37 33.25 3.06
3542 3814 4.588106 TGCTCATTTTCAGAAATCACCCAA 59.412 37.500 0.00 0.00 33.25 4.12
3547 3819 6.207417 TCATTTTCAGAAATCACCCAACTCTC 59.793 38.462 0.00 0.00 33.25 3.20
3569 3841 0.528466 TTCTCGCACGAGCCATGATC 60.528 55.000 15.04 0.00 41.71 2.92
3570 3842 1.227060 CTCGCACGAGCCATGATCA 60.227 57.895 7.18 0.00 37.52 2.92
3571 3843 0.807275 CTCGCACGAGCCATGATCAA 60.807 55.000 7.18 0.00 37.52 2.57
3572 3844 0.179076 TCGCACGAGCCATGATCAAT 60.179 50.000 0.00 0.00 37.52 2.57
3574 3846 1.302366 GCACGAGCCATGATCAATGA 58.698 50.000 0.00 0.00 38.72 2.57
3575 3847 1.003116 GCACGAGCCATGATCAATGAC 60.003 52.381 0.00 0.00 38.72 3.06
3576 3848 1.600957 CACGAGCCATGATCAATGACC 59.399 52.381 0.00 0.00 38.72 4.02
3577 3849 0.863799 CGAGCCATGATCAATGACCG 59.136 55.000 0.00 0.00 38.72 4.79
3579 3851 1.162181 AGCCATGATCAATGACCGCG 61.162 55.000 0.00 0.00 38.72 6.46
3580 3852 1.944035 CCATGATCAATGACCGCGG 59.056 57.895 26.86 26.86 38.72 6.46
3581 3853 1.509644 CCATGATCAATGACCGCGGG 61.510 60.000 31.76 11.50 38.72 6.13
3659 3943 1.191096 GATGCGTTTTATTGCCAGCG 58.809 50.000 0.00 0.00 0.00 5.18
3698 3982 1.442769 GACATGGAGAATGCACGTGT 58.557 50.000 18.38 0.00 41.42 4.49
3701 3985 1.328680 CATGGAGAATGCACGTGTAGC 59.671 52.381 18.38 9.22 41.42 3.58
3800 4139 2.042259 TGACCGATACCGTGCGAGT 61.042 57.895 0.00 0.00 0.00 4.18
3855 4194 1.380650 GACCTTCCTCTCGGCTCCT 60.381 63.158 0.00 0.00 0.00 3.69
3856 4195 0.106619 GACCTTCCTCTCGGCTCCTA 60.107 60.000 0.00 0.00 0.00 2.94
3892 4234 4.516195 GCCTCCCTTCCGTCTCGC 62.516 72.222 0.00 0.00 0.00 5.03
3941 4283 2.275318 CTTGCTTCCAGATTCCGACTC 58.725 52.381 0.00 0.00 0.00 3.36
3947 4289 0.818296 CCAGATTCCGACTCCGAGTT 59.182 55.000 1.71 0.00 38.22 3.01
3971 4316 3.937706 CCTCTGATGCAAGTTAACAGGAG 59.062 47.826 8.61 2.23 0.00 3.69
3972 4317 3.338249 TCTGATGCAAGTTAACAGGAGC 58.662 45.455 8.61 4.71 0.00 4.70
3973 4318 3.076621 CTGATGCAAGTTAACAGGAGCA 58.923 45.455 8.61 11.82 36.34 4.26
3984 4329 1.731720 ACAGGAGCATTTCTCGCTTC 58.268 50.000 0.00 0.00 42.82 3.86
4113 4473 1.241315 ACCGTTGGCTTGGTATGTGC 61.241 55.000 0.00 0.00 36.50 4.57
4116 4476 1.665679 CGTTGGCTTGGTATGTGCTAG 59.334 52.381 0.00 0.00 0.00 3.42
4117 4477 1.401905 GTTGGCTTGGTATGTGCTAGC 59.598 52.381 8.10 8.10 0.00 3.42
4121 4481 1.936547 GCTTGGTATGTGCTAGCACTC 59.063 52.381 39.44 29.35 46.30 3.51
4122 4482 2.419297 GCTTGGTATGTGCTAGCACTCT 60.419 50.000 39.44 30.03 46.30 3.24
4123 4483 3.181475 GCTTGGTATGTGCTAGCACTCTA 60.181 47.826 39.44 29.13 46.30 2.43
4124 4484 4.502259 GCTTGGTATGTGCTAGCACTCTAT 60.502 45.833 39.44 29.18 46.30 1.98
4125 4485 5.279006 GCTTGGTATGTGCTAGCACTCTATA 60.279 44.000 39.44 28.26 46.30 1.31
4126 4486 6.573289 GCTTGGTATGTGCTAGCACTCTATAT 60.573 42.308 39.44 28.56 46.30 0.86
4127 4487 6.272822 TGGTATGTGCTAGCACTCTATATG 57.727 41.667 39.44 0.00 46.30 1.78
4128 4488 5.775195 TGGTATGTGCTAGCACTCTATATGT 59.225 40.000 39.44 20.78 46.30 2.29
4129 4489 6.946009 TGGTATGTGCTAGCACTCTATATGTA 59.054 38.462 39.44 22.01 46.30 2.29
4130 4490 7.121315 TGGTATGTGCTAGCACTCTATATGTAG 59.879 40.741 39.44 0.00 46.30 2.74
4131 4491 7.121463 GGTATGTGCTAGCACTCTATATGTAGT 59.879 40.741 39.44 17.48 46.30 2.73
4133 4493 6.062095 TGTGCTAGCACTCTATATGTAGTCA 58.938 40.000 39.44 17.94 46.30 3.41
4134 4494 6.717084 TGTGCTAGCACTCTATATGTAGTCAT 59.283 38.462 39.44 0.00 46.30 3.06
4135 4495 7.026562 GTGCTAGCACTCTATATGTAGTCATG 58.973 42.308 35.25 0.00 43.12 3.07
4136 4496 6.717084 TGCTAGCACTCTATATGTAGTCATGT 59.283 38.462 14.93 0.00 35.70 3.21
4137 4497 7.231519 TGCTAGCACTCTATATGTAGTCATGTT 59.768 37.037 14.93 0.00 35.70 2.71
4138 4498 8.085296 GCTAGCACTCTATATGTAGTCATGTTT 58.915 37.037 10.63 0.00 35.70 2.83
4139 4499 9.973450 CTAGCACTCTATATGTAGTCATGTTTT 57.027 33.333 0.00 0.00 35.70 2.43
4161 4521 4.630894 TTTTTCAAGAACACGATGCAGT 57.369 36.364 0.00 0.00 0.00 4.40
4162 4522 4.630894 TTTTCAAGAACACGATGCAGTT 57.369 36.364 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 5.613358 AAAACTGCAGCTAGTTACATGTC 57.387 39.130 15.27 0.00 39.86 3.06
27 28 5.995282 TGTAAAACTGCAGCTAGTTACATGT 59.005 36.000 15.27 2.69 39.86 3.21
28 29 6.368791 TCTGTAAAACTGCAGCTAGTTACATG 59.631 38.462 22.13 17.82 39.86 3.21
87 89 6.931281 TGATATTTGGTATTCTGAGTAGCAGC 59.069 38.462 11.11 0.00 44.52 5.25
158 163 4.543084 GCCGCTCGAAGCCAATGC 62.543 66.667 0.00 0.00 38.18 3.56
159 164 2.315038 GAAGCCGCTCGAAGCCAATG 62.315 60.000 0.00 0.00 38.18 2.82
160 165 2.045926 AAGCCGCTCGAAGCCAAT 60.046 55.556 0.00 0.00 38.18 3.16
161 166 2.742372 GAAGCCGCTCGAAGCCAA 60.742 61.111 0.00 0.00 38.18 4.52
162 167 3.529341 TTGAAGCCGCTCGAAGCCA 62.529 57.895 0.00 0.00 38.18 4.75
163 168 2.742372 TTGAAGCCGCTCGAAGCC 60.742 61.111 0.00 0.00 38.18 4.35
169 174 2.285834 CGTATGAATGTTGAAGCCGCTC 60.286 50.000 0.00 0.00 0.00 5.03
178 183 2.032054 AGGCGATTGCGTATGAATGTTG 59.968 45.455 0.00 0.00 44.10 3.33
204 209 0.546598 GGTAGTTGGGTCCTGGATGG 59.453 60.000 0.00 0.00 37.10 3.51
205 210 1.584724 AGGTAGTTGGGTCCTGGATG 58.415 55.000 0.00 0.00 0.00 3.51
206 211 1.916181 CAAGGTAGTTGGGTCCTGGAT 59.084 52.381 0.00 0.00 31.82 3.41
207 212 1.358152 CAAGGTAGTTGGGTCCTGGA 58.642 55.000 0.00 0.00 31.82 3.86
216 221 2.030805 GCTTGCTGTTCCAAGGTAGTTG 60.031 50.000 4.33 0.00 41.88 3.16
300 400 3.364664 GGCGTGTAAGCTTGTTTAGAACC 60.365 47.826 9.86 0.00 37.29 3.62
307 407 1.949257 GCTGGCGTGTAAGCTTGTT 59.051 52.632 9.86 0.00 36.47 2.83
336 436 5.544682 AGGTAGGGGAAAGTCCATAATGTA 58.455 41.667 0.00 0.00 38.64 2.29
343 443 2.374170 GTTTGAGGTAGGGGAAAGTCCA 59.626 50.000 0.00 0.00 38.64 4.02
348 448 1.777878 TGCAGTTTGAGGTAGGGGAAA 59.222 47.619 0.00 0.00 0.00 3.13
349 449 1.440618 TGCAGTTTGAGGTAGGGGAA 58.559 50.000 0.00 0.00 0.00 3.97
350 450 1.440618 TTGCAGTTTGAGGTAGGGGA 58.559 50.000 0.00 0.00 0.00 4.81
351 451 2.286365 TTTGCAGTTTGAGGTAGGGG 57.714 50.000 0.00 0.00 0.00 4.79
352 452 2.755103 GGATTTGCAGTTTGAGGTAGGG 59.245 50.000 0.00 0.00 0.00 3.53
353 453 3.420893 TGGATTTGCAGTTTGAGGTAGG 58.579 45.455 0.00 0.00 0.00 3.18
385 485 2.093235 GCCTCTGTTGCTGGATCTTAGT 60.093 50.000 0.00 0.00 0.00 2.24
465 565 1.001378 AGGCGCTGTTTGTTTGATGAC 60.001 47.619 7.64 0.00 0.00 3.06
485 585 0.525761 GCTCCCGCTGTTGCAATTTA 59.474 50.000 0.59 0.00 39.64 1.40
515 615 1.939838 GCTGGGTCGTCTCGTTGATTT 60.940 52.381 0.00 0.00 0.00 2.17
520 620 1.215647 GATGCTGGGTCGTCTCGTT 59.784 57.895 0.00 0.00 0.00 3.85
525 625 3.188786 GCGTGATGCTGGGTCGTC 61.189 66.667 0.00 0.00 41.73 4.20
686 786 1.664873 GATAGCTTTTCCCCACGGAC 58.335 55.000 0.00 0.00 38.14 4.79
763 863 3.327626 ACAACGATACAATTGTGCGGTA 58.672 40.909 27.69 9.81 37.64 4.02
764 864 2.147958 ACAACGATACAATTGTGCGGT 58.852 42.857 27.69 22.94 37.64 5.68
815 915 1.254026 ACCGAGTGGATCTGAAACGA 58.746 50.000 0.00 0.00 39.21 3.85
900 1003 2.343758 GAGCAGGGACACGCAGAA 59.656 61.111 0.00 0.00 0.00 3.02
901 1004 3.695606 GGAGCAGGGACACGCAGA 61.696 66.667 0.00 0.00 0.00 4.26
902 1005 4.767255 GGGAGCAGGGACACGCAG 62.767 72.222 0.00 0.00 0.00 5.18
904 1007 3.842925 TTTGGGAGCAGGGACACGC 62.843 63.158 0.00 0.00 0.00 5.34
905 1008 1.966451 GTTTGGGAGCAGGGACACG 60.966 63.158 0.00 0.00 0.00 4.49
906 1009 1.603739 GGTTTGGGAGCAGGGACAC 60.604 63.158 0.00 0.00 0.00 3.67
907 1010 2.840753 GGGTTTGGGAGCAGGGACA 61.841 63.158 0.00 0.00 0.00 4.02
908 1011 2.035783 GGGTTTGGGAGCAGGGAC 59.964 66.667 0.00 0.00 0.00 4.46
909 1012 3.264845 GGGGTTTGGGAGCAGGGA 61.265 66.667 0.00 0.00 0.00 4.20
910 1013 4.382541 GGGGGTTTGGGAGCAGGG 62.383 72.222 0.00 0.00 0.00 4.45
911 1014 3.159104 TTGGGGGTTTGGGAGCAGG 62.159 63.158 0.00 0.00 0.00 4.85
912 1015 1.908299 GTTGGGGGTTTGGGAGCAG 60.908 63.158 0.00 0.00 0.00 4.24
913 1016 2.200092 GTTGGGGGTTTGGGAGCA 59.800 61.111 0.00 0.00 0.00 4.26
914 1017 2.603473 GGTTGGGGGTTTGGGAGC 60.603 66.667 0.00 0.00 0.00 4.70
915 1018 0.399233 TTTGGTTGGGGGTTTGGGAG 60.399 55.000 0.00 0.00 0.00 4.30
916 1019 0.044244 TTTTGGTTGGGGGTTTGGGA 59.956 50.000 0.00 0.00 0.00 4.37
917 1020 0.181587 GTTTTGGTTGGGGGTTTGGG 59.818 55.000 0.00 0.00 0.00 4.12
930 1033 0.823460 CGGAATGGATGGGGTTTTGG 59.177 55.000 0.00 0.00 0.00 3.28
1043 1149 3.469863 GACAGGAACACCGGGTGCA 62.470 63.158 26.62 0.00 36.98 4.57
1046 1152 4.309950 GCGACAGGAACACCGGGT 62.310 66.667 6.32 0.00 0.00 5.28
1209 1318 3.458163 TAGTCGCAGCCGGGGAAG 61.458 66.667 2.18 0.00 40.51 3.46
1338 1447 1.598685 GGTTCGACCCCAAAAGCGA 60.599 57.895 0.00 0.00 30.04 4.93
1342 1451 1.623163 GGATTGGTTCGACCCCAAAA 58.377 50.000 17.17 0.00 44.70 2.44
1349 1458 3.192922 CGGGCGGATTGGTTCGAC 61.193 66.667 0.00 0.00 0.00 4.20
1350 1459 4.460683 CCGGGCGGATTGGTTCGA 62.461 66.667 0.00 0.00 37.50 3.71
1367 1477 3.443045 CCACGAAGCACCCATGGC 61.443 66.667 6.09 0.00 0.00 4.40
1370 1480 0.327924 TCATTCCACGAAGCACCCAT 59.672 50.000 0.00 0.00 0.00 4.00
1382 1492 3.644966 ACCGAAATTAGCCTCATTCCA 57.355 42.857 0.00 0.00 0.00 3.53
1399 1509 1.817609 GTCGACCAACAACAAAACCG 58.182 50.000 3.51 0.00 0.00 4.44
1417 1527 2.045131 GTCCTCCTCGCTACACCGT 61.045 63.158 0.00 0.00 0.00 4.83
1435 1545 3.109619 GTTGTAGATCCTCTTCTTCGCG 58.890 50.000 0.00 0.00 0.00 5.87
1504 1614 1.815003 CCTTCCAGCTTGTTGGATGTC 59.185 52.381 7.02 0.00 46.22 3.06
1530 1640 3.435105 ACAAGTTTGCATTTCGCTGAA 57.565 38.095 0.00 0.00 43.06 3.02
1561 1671 4.037021 CCAATCGTCGTAATACGTGCTTA 58.963 43.478 12.78 0.00 43.14 3.09
1568 1685 4.183101 TCCAAACCCAATCGTCGTAATAC 58.817 43.478 0.00 0.00 0.00 1.89
1569 1686 4.468765 TCCAAACCCAATCGTCGTAATA 57.531 40.909 0.00 0.00 0.00 0.98
1573 1690 2.624636 GTATCCAAACCCAATCGTCGT 58.375 47.619 0.00 0.00 0.00 4.34
1577 1694 3.820557 AGATGGTATCCAAACCCAATCG 58.179 45.455 0.00 0.00 38.90 3.34
1578 1695 5.770162 CCTAAGATGGTATCCAAACCCAATC 59.230 44.000 0.00 0.00 38.90 2.67
1584 1701 6.884836 ACTGAAACCTAAGATGGTATCCAAAC 59.115 38.462 0.00 0.00 39.83 2.93
1619 1736 7.600375 ACAGAATACTGAAACATGACTGTACAG 59.400 37.037 21.44 21.44 46.03 2.74
1636 1753 8.688151 GTCTACCTCATTAGACAACAGAATACT 58.312 37.037 5.58 0.00 45.12 2.12
1637 1754 8.859517 GTCTACCTCATTAGACAACAGAATAC 57.140 38.462 5.58 0.00 45.12 1.89
1647 1764 6.472686 ACATCCAAGTCTACCTCATTAGAC 57.527 41.667 2.62 2.62 45.83 2.59
1648 1765 7.331026 CAAACATCCAAGTCTACCTCATTAGA 58.669 38.462 0.00 0.00 0.00 2.10
1649 1766 6.540189 CCAAACATCCAAGTCTACCTCATTAG 59.460 42.308 0.00 0.00 0.00 1.73
1650 1767 6.414732 CCAAACATCCAAGTCTACCTCATTA 58.585 40.000 0.00 0.00 0.00 1.90
1651 1768 5.256474 CCAAACATCCAAGTCTACCTCATT 58.744 41.667 0.00 0.00 0.00 2.57
1652 1769 4.324563 CCCAAACATCCAAGTCTACCTCAT 60.325 45.833 0.00 0.00 0.00 2.90
1653 1770 3.009033 CCCAAACATCCAAGTCTACCTCA 59.991 47.826 0.00 0.00 0.00 3.86
1654 1771 3.009143 ACCCAAACATCCAAGTCTACCTC 59.991 47.826 0.00 0.00 0.00 3.85
1655 1772 2.986728 ACCCAAACATCCAAGTCTACCT 59.013 45.455 0.00 0.00 0.00 3.08
1656 1773 3.434940 ACCCAAACATCCAAGTCTACC 57.565 47.619 0.00 0.00 0.00 3.18
1657 1774 7.312899 CAAAATACCCAAACATCCAAGTCTAC 58.687 38.462 0.00 0.00 0.00 2.59
1658 1775 6.071616 GCAAAATACCCAAACATCCAAGTCTA 60.072 38.462 0.00 0.00 0.00 2.59
1659 1776 5.279456 GCAAAATACCCAAACATCCAAGTCT 60.279 40.000 0.00 0.00 0.00 3.24
1660 1777 4.929211 GCAAAATACCCAAACATCCAAGTC 59.071 41.667 0.00 0.00 0.00 3.01
1661 1778 4.560513 CGCAAAATACCCAAACATCCAAGT 60.561 41.667 0.00 0.00 0.00 3.16
1662 1779 3.925913 CGCAAAATACCCAAACATCCAAG 59.074 43.478 0.00 0.00 0.00 3.61
1663 1780 3.862642 GCGCAAAATACCCAAACATCCAA 60.863 43.478 0.30 0.00 0.00 3.53
1664 1781 2.353208 GCGCAAAATACCCAAACATCCA 60.353 45.455 0.30 0.00 0.00 3.41
1665 1782 2.267426 GCGCAAAATACCCAAACATCC 58.733 47.619 0.30 0.00 0.00 3.51
1666 1783 1.917303 CGCGCAAAATACCCAAACATC 59.083 47.619 8.75 0.00 0.00 3.06
1667 1784 1.989430 CGCGCAAAATACCCAAACAT 58.011 45.000 8.75 0.00 0.00 2.71
1668 1785 0.664767 GCGCGCAAAATACCCAAACA 60.665 50.000 29.10 0.00 0.00 2.83
1669 1786 1.670064 CGCGCGCAAAATACCCAAAC 61.670 55.000 32.61 0.00 0.00 2.93
1670 1787 1.442857 CGCGCGCAAAATACCCAAA 60.443 52.632 32.61 0.00 0.00 3.28
1671 1788 2.177038 CGCGCGCAAAATACCCAA 59.823 55.556 32.61 0.00 0.00 4.12
1672 1789 3.805307 CCGCGCGCAAAATACCCA 61.805 61.111 32.61 0.00 0.00 4.51
1673 1790 3.806422 ACCGCGCGCAAAATACCC 61.806 61.111 32.61 0.00 0.00 3.69
1674 1791 2.575789 CACCGCGCGCAAAATACC 60.576 61.111 32.61 0.00 0.00 2.73
1675 1792 3.237538 GCACCGCGCGCAAAATAC 61.238 61.111 32.61 11.05 0.00 1.89
1689 1806 2.749441 GAAGGGGCAGAGCAGCAC 60.749 66.667 0.00 0.00 37.14 4.40
1690 1807 2.932194 AGAAGGGGCAGAGCAGCA 60.932 61.111 0.00 0.00 35.83 4.41
1691 1808 2.438075 CAGAAGGGGCAGAGCAGC 60.438 66.667 0.00 0.00 0.00 5.25
1692 1809 2.271497 CCAGAAGGGGCAGAGCAG 59.729 66.667 0.00 0.00 0.00 4.24
1693 1810 2.530151 ACCAGAAGGGGCAGAGCA 60.530 61.111 0.00 0.00 42.91 4.26
1694 1811 2.045536 CACCAGAAGGGGCAGAGC 60.046 66.667 0.00 0.00 42.91 4.09
1695 1812 1.908340 CTCCACCAGAAGGGGCAGAG 61.908 65.000 0.00 0.00 42.91 3.35
1696 1813 1.920325 CTCCACCAGAAGGGGCAGA 60.920 63.158 0.00 0.00 42.91 4.26
1697 1814 2.673523 CTCCACCAGAAGGGGCAG 59.326 66.667 0.00 0.00 42.91 4.85
1698 1815 2.935481 CCTCCACCAGAAGGGGCA 60.935 66.667 0.00 0.00 42.91 5.36
1699 1816 2.203549 CTTCCTCCACCAGAAGGGGC 62.204 65.000 0.00 0.00 42.91 5.80
1700 1817 1.994463 CTTCCTCCACCAGAAGGGG 59.006 63.158 0.00 0.00 42.91 4.79
1703 1820 1.699634 TCAACCTTCCTCCACCAGAAG 59.300 52.381 0.00 0.00 39.38 2.85
1704 1821 1.699634 CTCAACCTTCCTCCACCAGAA 59.300 52.381 0.00 0.00 0.00 3.02
1705 1822 1.352083 CTCAACCTTCCTCCACCAGA 58.648 55.000 0.00 0.00 0.00 3.86
1706 1823 1.059913 ACTCAACCTTCCTCCACCAG 58.940 55.000 0.00 0.00 0.00 4.00
1707 1824 1.142870 CAACTCAACCTTCCTCCACCA 59.857 52.381 0.00 0.00 0.00 4.17
1708 1825 1.545651 CCAACTCAACCTTCCTCCACC 60.546 57.143 0.00 0.00 0.00 4.61
1709 1826 1.143073 ACCAACTCAACCTTCCTCCAC 59.857 52.381 0.00 0.00 0.00 4.02
1710 1827 1.518367 ACCAACTCAACCTTCCTCCA 58.482 50.000 0.00 0.00 0.00 3.86
1711 1828 2.027100 CCTACCAACTCAACCTTCCTCC 60.027 54.545 0.00 0.00 0.00 4.30
1712 1829 2.638363 ACCTACCAACTCAACCTTCCTC 59.362 50.000 0.00 0.00 0.00 3.71
1713 1830 2.372172 CACCTACCAACTCAACCTTCCT 59.628 50.000 0.00 0.00 0.00 3.36
1714 1831 2.105993 ACACCTACCAACTCAACCTTCC 59.894 50.000 0.00 0.00 0.00 3.46
1715 1832 3.400255 GACACCTACCAACTCAACCTTC 58.600 50.000 0.00 0.00 0.00 3.46
1716 1833 2.105993 GGACACCTACCAACTCAACCTT 59.894 50.000 0.00 0.00 0.00 3.50
1717 1834 1.697982 GGACACCTACCAACTCAACCT 59.302 52.381 0.00 0.00 0.00 3.50
1718 1835 1.607251 CGGACACCTACCAACTCAACC 60.607 57.143 0.00 0.00 0.00 3.77
1719 1836 1.069668 ACGGACACCTACCAACTCAAC 59.930 52.381 0.00 0.00 0.00 3.18
1720 1837 1.416243 ACGGACACCTACCAACTCAA 58.584 50.000 0.00 0.00 0.00 3.02
1721 1838 1.069513 CAACGGACACCTACCAACTCA 59.930 52.381 0.00 0.00 0.00 3.41
1722 1839 1.607251 CCAACGGACACCTACCAACTC 60.607 57.143 0.00 0.00 0.00 3.01
1723 1840 0.395312 CCAACGGACACCTACCAACT 59.605 55.000 0.00 0.00 0.00 3.16
1724 1841 0.107268 ACCAACGGACACCTACCAAC 59.893 55.000 0.00 0.00 0.00 3.77
1725 1842 0.838608 AACCAACGGACACCTACCAA 59.161 50.000 0.00 0.00 0.00 3.67
1726 1843 0.838608 AAACCAACGGACACCTACCA 59.161 50.000 0.00 0.00 0.00 3.25
1727 1844 1.605232 CAAAACCAACGGACACCTACC 59.395 52.381 0.00 0.00 0.00 3.18
1728 1845 2.291365 ACAAAACCAACGGACACCTAC 58.709 47.619 0.00 0.00 0.00 3.18
1729 1846 2.713863 ACAAAACCAACGGACACCTA 57.286 45.000 0.00 0.00 0.00 3.08
1730 1847 1.842052 AACAAAACCAACGGACACCT 58.158 45.000 0.00 0.00 0.00 4.00
1731 1848 2.094649 TCAAACAAAACCAACGGACACC 60.095 45.455 0.00 0.00 0.00 4.16
1732 1849 3.219052 TCAAACAAAACCAACGGACAC 57.781 42.857 0.00 0.00 0.00 3.67
1733 1850 3.256136 AGTTCAAACAAAACCAACGGACA 59.744 39.130 0.00 0.00 0.00 4.02
1734 1851 3.840468 AGTTCAAACAAAACCAACGGAC 58.160 40.909 0.00 0.00 0.00 4.79
1735 1852 4.522722 AAGTTCAAACAAAACCAACGGA 57.477 36.364 0.00 0.00 0.00 4.69
1736 1853 4.449405 ACAAAGTTCAAACAAAACCAACGG 59.551 37.500 0.00 0.00 0.00 4.44
1737 1854 5.583969 ACAAAGTTCAAACAAAACCAACG 57.416 34.783 0.00 0.00 0.00 4.10
1738 1855 8.713271 TGATTACAAAGTTCAAACAAAACCAAC 58.287 29.630 0.00 0.00 0.00 3.77
1739 1856 8.833231 TGATTACAAAGTTCAAACAAAACCAA 57.167 26.923 0.00 0.00 0.00 3.67
1740 1857 8.833231 TTGATTACAAAGTTCAAACAAAACCA 57.167 26.923 0.00 0.00 32.73 3.67
1748 1865 9.462174 CATAGCAGTTTGATTACAAAGTTCAAA 57.538 29.630 0.00 0.00 44.21 2.69
1749 1866 8.081633 CCATAGCAGTTTGATTACAAAGTTCAA 58.918 33.333 0.00 0.00 44.21 2.69
1750 1867 7.230510 ACCATAGCAGTTTGATTACAAAGTTCA 59.769 33.333 0.00 0.00 44.21 3.18
1751 1868 7.593825 ACCATAGCAGTTTGATTACAAAGTTC 58.406 34.615 0.00 0.00 44.21 3.01
1752 1869 7.524717 ACCATAGCAGTTTGATTACAAAGTT 57.475 32.000 0.00 0.00 44.21 2.66
1753 1870 7.524717 AACCATAGCAGTTTGATTACAAAGT 57.475 32.000 0.00 0.00 46.52 2.66
1754 1871 8.816640 AAAACCATAGCAGTTTGATTACAAAG 57.183 30.769 0.00 0.00 44.97 2.77
1755 1872 8.637986 AGAAAACCATAGCAGTTTGATTACAAA 58.362 29.630 0.00 0.00 42.66 2.83
1756 1873 8.177119 AGAAAACCATAGCAGTTTGATTACAA 57.823 30.769 0.00 0.00 37.50 2.41
1757 1874 7.759489 AGAAAACCATAGCAGTTTGATTACA 57.241 32.000 0.00 0.00 37.50 2.41
1768 1885 9.796120 CCGATTTTTATTAAGAAAACCATAGCA 57.204 29.630 7.48 0.00 0.00 3.49
1772 1889 9.869757 CCTTCCGATTTTTATTAAGAAAACCAT 57.130 29.630 7.48 0.42 0.00 3.55
1773 1890 8.308207 CCCTTCCGATTTTTATTAAGAAAACCA 58.692 33.333 7.48 0.00 0.00 3.67
1774 1891 7.762615 CCCCTTCCGATTTTTATTAAGAAAACC 59.237 37.037 7.48 2.93 0.00 3.27
1775 1892 8.525316 TCCCCTTCCGATTTTTATTAAGAAAAC 58.475 33.333 7.48 0.00 0.00 2.43
1776 1893 8.653036 TCCCCTTCCGATTTTTATTAAGAAAA 57.347 30.769 3.92 3.92 0.00 2.29
1777 1894 8.110908 TCTCCCCTTCCGATTTTTATTAAGAAA 58.889 33.333 0.00 0.00 0.00 2.52
1778 1895 7.635648 TCTCCCCTTCCGATTTTTATTAAGAA 58.364 34.615 0.00 0.00 0.00 2.52
1779 1896 7.202972 TCTCCCCTTCCGATTTTTATTAAGA 57.797 36.000 0.00 0.00 0.00 2.10
1780 1897 6.486993 CCTCTCCCCTTCCGATTTTTATTAAG 59.513 42.308 0.00 0.00 0.00 1.85
1781 1898 6.362248 CCTCTCCCCTTCCGATTTTTATTAA 58.638 40.000 0.00 0.00 0.00 1.40
1782 1899 5.689297 GCCTCTCCCCTTCCGATTTTTATTA 60.689 44.000 0.00 0.00 0.00 0.98
1783 1900 4.793201 CCTCTCCCCTTCCGATTTTTATT 58.207 43.478 0.00 0.00 0.00 1.40
1784 1901 3.435169 GCCTCTCCCCTTCCGATTTTTAT 60.435 47.826 0.00 0.00 0.00 1.40
1785 1902 2.092592 GCCTCTCCCCTTCCGATTTTTA 60.093 50.000 0.00 0.00 0.00 1.52
1786 1903 1.341089 GCCTCTCCCCTTCCGATTTTT 60.341 52.381 0.00 0.00 0.00 1.94
1787 1904 0.256177 GCCTCTCCCCTTCCGATTTT 59.744 55.000 0.00 0.00 0.00 1.82
1788 1905 1.636769 GGCCTCTCCCCTTCCGATTT 61.637 60.000 0.00 0.00 0.00 2.17
1789 1906 2.073101 GGCCTCTCCCCTTCCGATT 61.073 63.158 0.00 0.00 0.00 3.34
1790 1907 2.446802 GGCCTCTCCCCTTCCGAT 60.447 66.667 0.00 0.00 0.00 4.18
1791 1908 3.254035 AAGGCCTCTCCCCTTCCGA 62.254 63.158 5.23 0.00 38.25 4.55
1792 1909 2.689034 AAGGCCTCTCCCCTTCCG 60.689 66.667 5.23 0.00 38.25 4.30
1795 1912 1.461321 AAAAGAAGGCCTCTCCCCTT 58.539 50.000 5.23 1.96 45.09 3.95
1796 1913 2.361085 TAAAAGAAGGCCTCTCCCCT 57.639 50.000 5.23 0.00 31.02 4.79
1797 1914 2.509964 TGATAAAAGAAGGCCTCTCCCC 59.490 50.000 5.23 0.00 31.02 4.81
1798 1915 3.933861 TGATAAAAGAAGGCCTCTCCC 57.066 47.619 5.23 0.00 31.02 4.30
1799 1916 6.590234 TTTTTGATAAAAGAAGGCCTCTCC 57.410 37.500 5.23 0.00 31.02 3.71
1866 1983 5.514500 TTTCTGGCTCCCAACTAGTAAAT 57.486 39.130 0.00 0.00 30.80 1.40
1870 1987 4.388577 AATTTTCTGGCTCCCAACTAGT 57.611 40.909 0.00 0.00 30.80 2.57
1874 1991 4.335400 TGAAAATTTTCTGGCTCCCAAC 57.665 40.909 26.73 2.36 38.02 3.77
1875 1992 4.408596 ACTTGAAAATTTTCTGGCTCCCAA 59.591 37.500 26.73 12.88 38.02 4.12
1878 1995 5.200368 TCACTTGAAAATTTTCTGGCTCC 57.800 39.130 26.73 4.80 38.02 4.70
1882 1999 7.492020 TCACACATTCACTTGAAAATTTTCTGG 59.508 33.333 26.73 21.00 37.61 3.86
1885 2002 9.640974 CATTCACACATTCACTTGAAAATTTTC 57.359 29.630 21.60 21.60 37.61 2.29
1889 2006 5.697633 GGCATTCACACATTCACTTGAAAAT 59.302 36.000 0.00 0.00 37.61 1.82
1916 2036 6.088016 ACATGAACTTGTAACAACATGCAT 57.912 33.333 0.00 0.00 38.70 3.96
1920 2040 6.978080 GGACAAACATGAACTTGTAACAACAT 59.022 34.615 0.00 0.00 35.93 2.71
1921 2041 6.151985 AGGACAAACATGAACTTGTAACAACA 59.848 34.615 0.00 0.00 35.93 3.33
2005 2161 8.370493 AGAACAATGTTCATGAACCGATATAG 57.630 34.615 30.66 17.38 40.46 1.31
2011 2167 5.280945 ACAAAGAACAATGTTCATGAACCG 58.719 37.500 30.66 22.08 40.46 4.44
2043 2199 2.949177 AGCACACCATACAGTCCAAA 57.051 45.000 0.00 0.00 0.00 3.28
2048 2204 4.451629 GTGTAGTAGCACACCATACAGT 57.548 45.455 0.00 0.00 42.46 3.55
2058 2214 5.578776 ACAAAAGCAAAAGTGTAGTAGCAC 58.421 37.500 0.00 0.00 39.51 4.40
2074 2230 2.923020 CCTGACACACACAAACAAAAGC 59.077 45.455 0.00 0.00 0.00 3.51
2076 2232 3.157881 TCCCTGACACACACAAACAAAA 58.842 40.909 0.00 0.00 0.00 2.44
2079 2235 2.727123 ATCCCTGACACACACAAACA 57.273 45.000 0.00 0.00 0.00 2.83
2083 2239 3.507162 ATCAAATCCCTGACACACACA 57.493 42.857 0.00 0.00 0.00 3.72
2084 2240 4.037923 ACAAATCAAATCCCTGACACACAC 59.962 41.667 0.00 0.00 0.00 3.82
2090 2247 8.230472 AGATATCAACAAATCAAATCCCTGAC 57.770 34.615 5.32 0.00 0.00 3.51
2121 2278 9.444600 GAACACCTCACATAATAAACCTTCTAA 57.555 33.333 0.00 0.00 0.00 2.10
2141 2298 4.324267 ACATAAGGCTGTTACAGAACACC 58.676 43.478 17.40 7.57 40.72 4.16
2142 2299 5.941948 AACATAAGGCTGTTACAGAACAC 57.058 39.130 17.40 2.82 40.72 3.32
2146 2303 5.800296 TGCTAAACATAAGGCTGTTACAGA 58.200 37.500 17.40 0.00 38.38 3.41
2166 2323 9.926158 TGAACAATCAACAAACAAATATATGCT 57.074 25.926 0.00 0.00 30.99 3.79
2183 2343 9.322773 CTCTTCAGATTAGCTAATGAACAATCA 57.677 33.333 23.51 0.93 40.57 2.57
2186 2346 9.725019 TTTCTCTTCAGATTAGCTAATGAACAA 57.275 29.630 23.51 10.52 0.00 2.83
2193 2353 9.236006 AGCAATTTTTCTCTTCAGATTAGCTAA 57.764 29.630 8.99 8.99 0.00 3.09
2221 2388 4.083643 CCATAACACTGAAACTGCACTCAG 60.084 45.833 12.16 12.16 45.71 3.35
2227 2394 5.941948 AACTACCATAACACTGAAACTGC 57.058 39.130 0.00 0.00 0.00 4.40
2260 2427 8.722394 TGACTTAAAACGAATGTACATATGCAA 58.278 29.630 9.21 0.00 0.00 4.08
2323 2490 8.877864 AACTATCATTATGAAAACCACCAGAA 57.122 30.769 0.00 0.00 0.00 3.02
2325 2492 8.522830 ACAAACTATCATTATGAAAACCACCAG 58.477 33.333 0.00 0.00 0.00 4.00
2326 2493 8.303156 CACAAACTATCATTATGAAAACCACCA 58.697 33.333 0.00 0.00 0.00 4.17
2327 2494 8.303876 ACACAAACTATCATTATGAAAACCACC 58.696 33.333 0.00 0.00 0.00 4.61
2341 2508 9.743057 CCTGTAAATTGAAAACACAAACTATCA 57.257 29.630 0.00 0.00 33.44 2.15
2342 2509 8.699749 GCCTGTAAATTGAAAACACAAACTATC 58.300 33.333 0.00 0.00 33.44 2.08
2343 2510 7.655732 GGCCTGTAAATTGAAAACACAAACTAT 59.344 33.333 0.00 0.00 33.44 2.12
2395 2562 5.619132 TCTCAGCATCAACATAGGAATCA 57.381 39.130 0.00 0.00 0.00 2.57
2518 2685 8.520351 ACCAATTCTACTTTTAAGGAAAATCGG 58.480 33.333 0.00 0.00 34.08 4.18
2531 2698 9.082313 ACAAATCTGATTGACCAATTCTACTTT 57.918 29.630 3.22 0.00 34.38 2.66
2561 2728 4.262678 GGGAATAGACACTAGGAATCAGGC 60.263 50.000 0.00 0.00 0.00 4.85
2571 2738 7.844779 AGAATAACTGGAAGGGAATAGACACTA 59.155 37.037 0.00 0.00 39.30 2.74
2576 2743 7.255977 CGATGAGAATAACTGGAAGGGAATAGA 60.256 40.741 0.00 0.00 39.30 1.98
2598 2765 8.543774 GGTTCATAAAGTAGAATCAAGTCGATG 58.456 37.037 0.00 0.00 33.40 3.84
2600 2767 7.544566 GTGGTTCATAAAGTAGAATCAAGTCGA 59.455 37.037 0.00 0.00 36.69 4.20
2601 2768 7.545965 AGTGGTTCATAAAGTAGAATCAAGTCG 59.454 37.037 0.00 0.00 36.69 4.18
2617 2784 6.000840 TGCACAAAACTGATAGTGGTTCATA 58.999 36.000 0.00 0.00 32.80 2.15
2653 2820 9.772973 AACTATATTAGATCAAACCGTGCAATA 57.227 29.630 0.00 0.00 0.00 1.90
2739 2977 5.543714 TCATTCTACGACTGCAACCTTAAA 58.456 37.500 0.00 0.00 0.00 1.52
2754 2992 9.003658 TCAGTCTTTCCAAAAGAATCATTCTAC 57.996 33.333 0.00 0.00 39.61 2.59
2756 2994 8.647256 ATCAGTCTTTCCAAAAGAATCATTCT 57.353 30.769 3.82 0.00 43.15 2.40
2757 2995 7.972832 GGATCAGTCTTTCCAAAAGAATCATTC 59.027 37.037 3.82 0.00 33.44 2.67
2764 3002 5.940617 TGAAGGATCAGTCTTTCCAAAAGA 58.059 37.500 0.00 0.00 39.10 2.52
2793 3031 3.088532 TGAATAGACGGCAAGGCAAATT 58.911 40.909 0.00 0.00 0.00 1.82
2800 3038 5.873179 TTAAACCTTGAATAGACGGCAAG 57.127 39.130 0.00 0.00 38.90 4.01
2802 3040 5.818857 GGTATTAAACCTTGAATAGACGGCA 59.181 40.000 0.00 0.00 45.75 5.69
2818 3056 5.836024 AACAGTCTGAGGGTGGTATTAAA 57.164 39.130 6.91 0.00 0.00 1.52
2821 3059 3.394606 ACAAACAGTCTGAGGGTGGTATT 59.605 43.478 6.91 0.00 0.00 1.89
2828 3066 2.290260 TGGCATACAAACAGTCTGAGGG 60.290 50.000 6.91 0.00 0.00 4.30
2841 3079 0.908910 ACCGATTCAGGTGGCATACA 59.091 50.000 0.00 0.00 44.07 2.29
2842 3080 2.102588 AGTACCGATTCAGGTGGCATAC 59.897 50.000 9.51 0.00 45.54 2.39
2856 3094 8.742777 ACTCAATTATAGTTGTAACAGTACCGA 58.257 33.333 7.73 0.00 0.00 4.69
2873 3111 9.178758 GTCTGAAAGGGTCAATTACTCAATTAT 57.821 33.333 0.00 0.00 35.22 1.28
2874 3112 7.610305 GGTCTGAAAGGGTCAATTACTCAATTA 59.390 37.037 0.00 0.00 35.22 1.40
2875 3113 6.434340 GGTCTGAAAGGGTCAATTACTCAATT 59.566 38.462 0.00 0.00 35.22 2.32
2876 3114 5.946377 GGTCTGAAAGGGTCAATTACTCAAT 59.054 40.000 0.00 0.00 35.22 2.57
2877 3115 5.073144 AGGTCTGAAAGGGTCAATTACTCAA 59.927 40.000 0.00 0.00 35.22 3.02
2878 3116 4.597507 AGGTCTGAAAGGGTCAATTACTCA 59.402 41.667 0.00 0.00 35.22 3.41
2879 3117 4.938226 CAGGTCTGAAAGGGTCAATTACTC 59.062 45.833 0.00 0.00 35.22 2.59
2880 3118 4.597507 TCAGGTCTGAAAGGGTCAATTACT 59.402 41.667 0.00 0.00 36.53 2.24
2881 3119 4.906618 TCAGGTCTGAAAGGGTCAATTAC 58.093 43.478 0.00 0.00 36.53 1.89
2882 3120 5.576563 TTCAGGTCTGAAAGGGTCAATTA 57.423 39.130 10.61 0.00 45.56 1.40
2919 3157 5.937540 TGGAGAACAAAGTATGTACCACATG 59.062 40.000 2.07 0.00 42.99 3.21
2923 3161 6.367374 TGATGGAGAACAAAGTATGTACCA 57.633 37.500 0.00 0.00 42.99 3.25
2924 3162 7.103641 TCTTGATGGAGAACAAAGTATGTACC 58.896 38.462 0.00 0.00 42.99 3.34
2925 3163 8.547967 TTCTTGATGGAGAACAAAGTATGTAC 57.452 34.615 0.00 0.00 42.99 2.90
2961 3199 3.428862 CCCAGGCCAAAATTATCACGTTC 60.429 47.826 5.01 0.00 0.00 3.95
2964 3202 2.099405 ACCCAGGCCAAAATTATCACG 58.901 47.619 5.01 0.00 0.00 4.35
2977 3216 2.932187 GCAACATGATGAAAACCCAGGC 60.932 50.000 7.22 0.00 0.00 4.85
2980 3219 1.622811 GGGCAACATGATGAAAACCCA 59.377 47.619 7.22 0.00 36.07 4.51
2983 3222 4.525912 AGAAGGGCAACATGATGAAAAC 57.474 40.909 7.22 0.00 39.74 2.43
2995 3234 2.563798 CGGCTGCAAAGAAGGGCAA 61.564 57.895 0.50 0.00 39.93 4.52
3018 3257 3.363673 GGACGATTTCTCCGTTCACAAAC 60.364 47.826 0.00 0.00 40.67 2.93
3135 3374 0.031414 GGTAGGCCTGGTTCTCCCTA 60.031 60.000 17.99 0.00 0.00 3.53
3247 3489 1.129251 CAATGCAGCAAAGACGACGAT 59.871 47.619 0.00 0.00 0.00 3.73
3302 3544 5.981315 CAGTTCTTAACCTACAGTTCGTGAA 59.019 40.000 0.00 0.00 40.05 3.18
3303 3545 5.526115 CAGTTCTTAACCTACAGTTCGTGA 58.474 41.667 0.00 0.00 40.05 4.35
3304 3546 4.150098 GCAGTTCTTAACCTACAGTTCGTG 59.850 45.833 0.00 0.00 40.05 4.35
3305 3547 4.202182 TGCAGTTCTTAACCTACAGTTCGT 60.202 41.667 0.00 0.00 40.05 3.85
3338 3580 5.824097 ACCGTTACCAAAACAACTCACTTAT 59.176 36.000 0.00 0.00 0.00 1.73
3391 3641 9.387123 CAAGTTTAAATGCTCTCTTACAACTTC 57.613 33.333 0.00 0.00 31.23 3.01
3393 3643 8.677148 TCAAGTTTAAATGCTCTCTTACAACT 57.323 30.769 0.00 0.00 0.00 3.16
3394 3644 9.334693 CATCAAGTTTAAATGCTCTCTTACAAC 57.665 33.333 0.00 0.00 0.00 3.32
3396 3646 8.846943 TCATCAAGTTTAAATGCTCTCTTACA 57.153 30.769 0.00 0.00 0.00 2.41
3397 3647 9.548208 GTTCATCAAGTTTAAATGCTCTCTTAC 57.452 33.333 0.00 0.00 0.00 2.34
3399 3649 8.401490 AGTTCATCAAGTTTAAATGCTCTCTT 57.599 30.769 0.00 0.00 0.00 2.85
3400 3650 7.882271 AGAGTTCATCAAGTTTAAATGCTCTCT 59.118 33.333 0.00 0.26 31.76 3.10
3402 3652 7.120432 GGAGAGTTCATCAAGTTTAAATGCTCT 59.880 37.037 0.00 0.00 0.00 4.09
3403 3653 7.120432 AGGAGAGTTCATCAAGTTTAAATGCTC 59.880 37.037 0.00 0.00 0.00 4.26
3404 3654 6.944862 AGGAGAGTTCATCAAGTTTAAATGCT 59.055 34.615 0.00 0.00 0.00 3.79
3406 3656 7.540055 GCAAGGAGAGTTCATCAAGTTTAAATG 59.460 37.037 0.00 0.00 0.00 2.32
3408 3658 6.772716 AGCAAGGAGAGTTCATCAAGTTTAAA 59.227 34.615 0.00 0.00 0.00 1.52
3409 3659 6.299141 AGCAAGGAGAGTTCATCAAGTTTAA 58.701 36.000 0.00 0.00 0.00 1.52
3411 3661 4.723309 AGCAAGGAGAGTTCATCAAGTTT 58.277 39.130 0.00 0.00 0.00 2.66
3412 3662 4.041444 AGAGCAAGGAGAGTTCATCAAGTT 59.959 41.667 0.00 0.00 0.00 2.66
3413 3663 3.582208 AGAGCAAGGAGAGTTCATCAAGT 59.418 43.478 0.00 0.00 0.00 3.16
3414 3664 3.933955 CAGAGCAAGGAGAGTTCATCAAG 59.066 47.826 0.00 0.00 0.00 3.02
3415 3665 3.326006 ACAGAGCAAGGAGAGTTCATCAA 59.674 43.478 0.00 0.00 0.00 2.57
3424 3691 1.417517 TGCAGAAACAGAGCAAGGAGA 59.582 47.619 0.00 0.00 34.97 3.71
3429 3696 0.463654 ACGGTGCAGAAACAGAGCAA 60.464 50.000 0.00 0.00 40.35 3.91
3433 3700 1.668751 GACAAACGGTGCAGAAACAGA 59.331 47.619 0.00 0.00 0.00 3.41
3441 3708 2.203280 CAGGGGACAAACGGTGCA 60.203 61.111 0.00 0.00 40.06 4.57
3444 3711 2.113139 CTGCAGGGGACAAACGGT 59.887 61.111 5.57 0.00 0.00 4.83
3447 3714 1.244816 GGTAACTGCAGGGGACAAAC 58.755 55.000 19.93 4.88 0.00 2.93
3467 3739 2.621998 GAGCTCAATACTACCTACGCCA 59.378 50.000 9.40 0.00 0.00 5.69
3481 3753 1.686587 TCAGAGAAACGGTGAGCTCAA 59.313 47.619 20.19 0.00 0.00 3.02
3482 3754 1.328279 TCAGAGAAACGGTGAGCTCA 58.672 50.000 13.74 13.74 0.00 4.26
3483 3755 2.333014 CTTCAGAGAAACGGTGAGCTC 58.667 52.381 6.82 6.82 0.00 4.09
3484 3756 1.606737 GCTTCAGAGAAACGGTGAGCT 60.607 52.381 0.00 0.00 0.00 4.09
3485 3757 0.793250 GCTTCAGAGAAACGGTGAGC 59.207 55.000 0.00 0.00 0.00 4.26
3486 3758 1.063806 CGCTTCAGAGAAACGGTGAG 58.936 55.000 0.00 0.00 0.00 3.51
3487 3759 0.671796 TCGCTTCAGAGAAACGGTGA 59.328 50.000 3.19 0.00 0.00 4.02
3488 3760 1.063806 CTCGCTTCAGAGAAACGGTG 58.936 55.000 3.19 0.00 40.57 4.94
3489 3761 0.674534 ACTCGCTTCAGAGAAACGGT 59.325 50.000 0.62 0.00 40.57 4.83
3490 3762 2.520979 CTACTCGCTTCAGAGAAACGG 58.479 52.381 0.62 0.00 40.57 4.44
3491 3763 1.914700 GCTACTCGCTTCAGAGAAACG 59.085 52.381 0.62 0.00 40.57 3.60
3492 3764 2.920490 CTGCTACTCGCTTCAGAGAAAC 59.080 50.000 0.62 0.00 40.57 2.78
3493 3765 2.672478 GCTGCTACTCGCTTCAGAGAAA 60.672 50.000 0.62 0.00 40.57 2.52
3494 3766 1.135257 GCTGCTACTCGCTTCAGAGAA 60.135 52.381 0.62 0.00 40.57 2.87
3495 3767 0.453793 GCTGCTACTCGCTTCAGAGA 59.546 55.000 0.62 0.00 40.57 3.10
3496 3768 0.172127 TGCTGCTACTCGCTTCAGAG 59.828 55.000 0.00 0.00 43.56 3.35
3497 3769 0.172127 CTGCTGCTACTCGCTTCAGA 59.828 55.000 0.00 0.00 39.39 3.27
3498 3770 0.805322 CCTGCTGCTACTCGCTTCAG 60.805 60.000 0.00 0.00 40.11 3.02
3499 3771 1.216444 CCTGCTGCTACTCGCTTCA 59.784 57.895 0.00 0.00 40.11 3.02
3500 3772 1.520342 CCCTGCTGCTACTCGCTTC 60.520 63.158 0.00 0.00 40.11 3.86
3501 3773 2.286523 ACCCTGCTGCTACTCGCTT 61.287 57.895 0.00 0.00 40.11 4.68
3502 3774 2.681778 ACCCTGCTGCTACTCGCT 60.682 61.111 0.00 0.00 40.11 4.93
3503 3775 2.510238 CACCCTGCTGCTACTCGC 60.510 66.667 0.00 0.00 39.77 5.03
3504 3776 2.510238 GCACCCTGCTGCTACTCG 60.510 66.667 0.00 0.00 40.96 4.18
3519 3791 4.151121 TGGGTGATTTCTGAAAATGAGCA 58.849 39.130 6.95 0.00 37.96 4.26
3538 3810 0.318441 TGCGAGAACAGAGAGTTGGG 59.682 55.000 0.00 0.00 41.51 4.12
3542 3814 0.519519 CTCGTGCGAGAACAGAGAGT 59.480 55.000 15.65 0.00 44.53 3.24
3547 3819 1.446792 ATGGCTCGTGCGAGAACAG 60.447 57.895 23.57 0.00 44.53 3.16
3591 3863 0.981183 TCCACATTGTTACCGAGCCT 59.019 50.000 0.00 0.00 0.00 4.58
3651 3935 3.276091 CCACACGTTCGCTGGCAA 61.276 61.111 0.00 0.00 0.00 4.52
3652 3936 4.539083 ACCACACGTTCGCTGGCA 62.539 61.111 8.73 0.00 0.00 4.92
3653 3937 4.012895 CACCACACGTTCGCTGGC 62.013 66.667 8.73 0.00 0.00 4.85
3659 3943 2.677003 CCATCGCCACCACACGTTC 61.677 63.158 0.00 0.00 0.00 3.95
3698 3982 2.499205 CAGCGAATCACGGGGCTA 59.501 61.111 0.00 0.00 42.83 3.93
3701 3985 2.587322 TAAGGCAGCGAATCACGGGG 62.587 60.000 0.00 0.00 42.83 5.73
3789 4128 1.080772 CTTGAGCACTCGCACGGTA 60.081 57.895 0.00 0.00 42.27 4.02
3800 4139 0.318441 CACTCCCTTCGACTTGAGCA 59.682 55.000 4.62 0.00 0.00 4.26
3874 4216 3.839432 CGAGACGGAAGGGAGGCC 61.839 72.222 0.00 0.00 0.00 5.19
3875 4217 4.516195 GCGAGACGGAAGGGAGGC 62.516 72.222 0.00 0.00 0.00 4.70
3876 4218 3.839432 GGCGAGACGGAAGGGAGG 61.839 72.222 0.00 0.00 0.00 4.30
3877 4219 4.194720 CGGCGAGACGGAAGGGAG 62.195 72.222 0.00 0.00 0.00 4.30
3921 4263 2.275318 GAGTCGGAATCTGGAAGCAAG 58.725 52.381 0.00 0.00 0.00 4.01
3922 4264 1.066143 GGAGTCGGAATCTGGAAGCAA 60.066 52.381 5.36 0.00 0.00 3.91
3947 4289 4.041567 TCCTGTTAACTTGCATCAGAGGAA 59.958 41.667 7.22 0.00 0.00 3.36
3971 4316 0.741221 ACGGAGGAAGCGAGAAATGC 60.741 55.000 0.00 0.00 0.00 3.56
3972 4317 1.002366 CACGGAGGAAGCGAGAAATG 58.998 55.000 0.00 0.00 0.00 2.32
3973 4318 0.741221 GCACGGAGGAAGCGAGAAAT 60.741 55.000 0.00 0.00 0.00 2.17
3984 4329 0.742281 CACCTGAATCTGCACGGAGG 60.742 60.000 0.00 0.00 0.00 4.30
4032 4377 2.267324 GAGCCTCTTCGCAAGCCT 59.733 61.111 0.00 0.00 37.18 4.58
4033 4378 2.105466 CAGAGCCTCTTCGCAAGCC 61.105 63.158 0.00 0.00 37.18 4.35
4094 4454 1.241315 GCACATACCAAGCCAACGGT 61.241 55.000 0.00 0.00 39.41 4.83
4113 4473 9.973450 AAAACATGACTACATATAGAGTGCTAG 57.027 33.333 0.00 0.00 35.09 3.42
4140 4500 4.630894 ACTGCATCGTGTTCTTGAAAAA 57.369 36.364 0.00 0.00 0.00 1.94
4141 4501 4.630894 AACTGCATCGTGTTCTTGAAAA 57.369 36.364 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.