Multiple sequence alignment - TraesCS2B01G457600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G457600 chr2B 100.000 4236 0 0 1 4236 652410542 652406307 0.000000e+00 7823
1 TraesCS2B01G457600 chr2D 87.347 4331 306 114 3 4236 545851943 545847758 0.000000e+00 4739
2 TraesCS2B01G457600 chr2A 89.359 2791 194 63 1500 4236 689205266 689208007 0.000000e+00 3413
3 TraesCS2B01G457600 chr2A 86.826 668 57 13 1 655 689203249 689203898 0.000000e+00 717
4 TraesCS2B01G457600 chr2A 83.051 472 32 15 951 1392 689204240 689204693 6.640000e-103 385
5 TraesCS2B01G457600 chr2A 86.383 235 16 8 769 992 689204009 689204238 4.230000e-60 243


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G457600 chr2B 652406307 652410542 4235 True 7823.0 7823 100.00000 1 4236 1 chr2B.!!$R1 4235
1 TraesCS2B01G457600 chr2D 545847758 545851943 4185 True 4739.0 4739 87.34700 3 4236 1 chr2D.!!$R1 4233
2 TraesCS2B01G457600 chr2A 689203249 689208007 4758 False 1189.5 3413 86.40475 1 4236 4 chr2A.!!$F1 4235

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
713 747 0.030235 GTTTCTGCACCGTTTGTCCC 59.970 55.0 0.0 0.0 0.00 4.46 F
1565 2161 0.096454 GCCGTGTGTTAGGAAATCGC 59.904 55.0 0.0 0.0 0.00 4.58 F
2698 3308 0.043940 AAGAGCCTGATCCAGAGGGT 59.956 55.0 2.1 2.1 44.16 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2677 3287 0.179051 CCTCTGGATCAGGCTCTTGC 60.179 60.0 0.00 0.0 38.76 4.01 R
2716 3326 0.034756 TTTCCTGCACAGAAGCGCTA 59.965 50.0 12.05 0.0 37.31 4.26 R
4216 4863 0.110486 ATTGAAACCGGTCTGTGGCT 59.890 50.0 8.04 0.0 0.00 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 7.199167 TGGAAAGACTGATCCTTCAATCATA 57.801 36.000 8.57 0.00 35.21 2.15
58 59 7.014038 AGACTGATCCTTCAATCATAATTTGCC 59.986 37.037 0.00 0.00 35.21 4.52
60 61 7.343833 ACTGATCCTTCAATCATAATTTGCCTT 59.656 33.333 0.00 0.00 35.21 4.35
63 64 4.812626 CCTTCAATCATAATTTGCCTTGCC 59.187 41.667 0.00 0.00 0.00 4.52
64 65 4.044336 TCAATCATAATTTGCCTTGCCG 57.956 40.909 0.00 0.00 0.00 5.69
99 100 5.836024 TTAATACCACCCTCAGACTGTTT 57.164 39.130 1.59 0.00 0.00 2.83
100 101 3.703001 ATACCACCCTCAGACTGTTTG 57.297 47.619 1.59 0.00 0.00 2.93
107 108 2.290260 CCCTCAGACTGTTTGTATGCCA 60.290 50.000 1.59 0.00 37.76 4.92
114 115 3.758554 GACTGTTTGTATGCCACCTGAAT 59.241 43.478 0.00 0.00 0.00 2.57
117 118 2.036958 TTGTATGCCACCTGAATCGG 57.963 50.000 0.00 0.00 0.00 4.18
120 121 2.159014 TGTATGCCACCTGAATCGGTAC 60.159 50.000 0.00 0.00 34.94 3.34
122 123 0.249120 TGCCACCTGAATCGGTACTG 59.751 55.000 0.00 0.00 34.94 2.74
123 124 0.249398 GCCACCTGAATCGGTACTGT 59.751 55.000 0.64 0.00 34.94 3.55
131 132 5.477984 ACCTGAATCGGTACTGTTACAACTA 59.522 40.000 0.64 0.00 34.94 2.24
132 133 6.154021 ACCTGAATCGGTACTGTTACAACTAT 59.846 38.462 0.64 0.00 34.94 2.12
133 134 7.340232 ACCTGAATCGGTACTGTTACAACTATA 59.660 37.037 0.64 0.00 34.94 1.31
134 135 8.192774 CCTGAATCGGTACTGTTACAACTATAA 58.807 37.037 0.64 0.00 0.00 0.98
135 136 9.745880 CTGAATCGGTACTGTTACAACTATAAT 57.254 33.333 0.64 0.00 0.00 1.28
139 140 9.745880 ATCGGTACTGTTACAACTATAATTGAG 57.254 33.333 0.04 0.00 33.57 3.02
140 141 8.742777 TCGGTACTGTTACAACTATAATTGAGT 58.257 33.333 0.04 0.00 33.57 3.41
177 178 8.418597 TCAGACCTGAACTATACATATTACCC 57.581 38.462 0.00 0.00 36.53 3.69
181 182 8.506196 ACCTGAACTATACATATTACCCATGT 57.494 34.615 0.00 0.00 39.82 3.21
182 183 8.375506 ACCTGAACTATACATATTACCCATGTG 58.624 37.037 0.00 0.00 37.22 3.21
183 184 7.824289 CCTGAACTATACATATTACCCATGTGG 59.176 40.741 0.00 0.00 37.22 4.17
219 220 4.931601 TCTCCATCAAGAACATTTCTCACG 59.068 41.667 0.00 0.00 39.61 4.35
222 223 5.179368 TCCATCAAGAACATTTCTCACGAAC 59.821 40.000 0.00 0.00 39.61 3.95
238 240 3.078837 ACGAACGTGATAATTTTGGCCT 58.921 40.909 3.32 0.00 0.00 5.19
241 243 2.099405 ACGTGATAATTTTGGCCTGGG 58.901 47.619 3.32 0.00 0.00 4.45
253 255 1.203162 TGGCCTGGGTTTTCATCATGT 60.203 47.619 3.32 0.00 0.00 3.21
276 278 0.239347 CCTTCTTTGCAGCCGAGTTG 59.761 55.000 0.00 0.00 0.00 3.16
291 293 2.605818 CGAGTTGTTTGTGAACGGAGAA 59.394 45.455 0.00 0.00 38.65 2.87
425 427 1.644786 GCCTACCAACGGTGACATGC 61.645 60.000 0.00 0.00 36.19 4.06
531 536 1.541147 GTCTTTGCTGCATTGTAGCCA 59.459 47.619 21.72 10.11 40.42 4.75
560 565 7.255590 CCATATCTGGGCGTTTATTTTCTTCAT 60.256 37.037 0.00 0.00 39.04 2.57
561 566 5.975693 TCTGGGCGTTTATTTTCTTCATT 57.024 34.783 0.00 0.00 0.00 2.57
562 567 5.949735 TCTGGGCGTTTATTTTCTTCATTC 58.050 37.500 0.00 0.00 0.00 2.67
563 568 5.475220 TCTGGGCGTTTATTTTCTTCATTCA 59.525 36.000 0.00 0.00 0.00 2.57
596 601 7.713734 AGGTTAAGAACTGCATGTACTACTA 57.286 36.000 0.00 0.00 0.00 1.82
643 656 1.791103 TTGGTTTGCGGCGGAAAGAG 61.791 55.000 26.70 0.00 0.00 2.85
644 657 2.258726 GGTTTGCGGCGGAAAGAGT 61.259 57.895 26.70 0.00 0.00 3.24
649 662 1.153353 TGCGGCGGAAAGAGTAAAAG 58.847 50.000 9.78 0.00 0.00 2.27
651 664 1.802365 GCGGCGGAAAGAGTAAAAGAA 59.198 47.619 9.78 0.00 0.00 2.52
652 665 2.159693 GCGGCGGAAAGAGTAAAAGAAG 60.160 50.000 9.78 0.00 0.00 2.85
654 667 3.497262 CGGCGGAAAGAGTAAAAGAAGTT 59.503 43.478 0.00 0.00 0.00 2.66
655 668 4.610680 CGGCGGAAAGAGTAAAAGAAGTTG 60.611 45.833 0.00 0.00 0.00 3.16
657 670 5.467735 GGCGGAAAGAGTAAAAGAAGTTGTA 59.532 40.000 0.00 0.00 0.00 2.41
658 671 6.017687 GGCGGAAAGAGTAAAAGAAGTTGTAA 60.018 38.462 0.00 0.00 0.00 2.41
660 673 7.042254 GCGGAAAGAGTAAAAGAAGTTGTAAGA 60.042 37.037 0.00 0.00 0.00 2.10
661 674 8.488764 CGGAAAGAGTAAAAGAAGTTGTAAGAG 58.511 37.037 0.00 0.00 0.00 2.85
662 675 9.543783 GGAAAGAGTAAAAGAAGTTGTAAGAGA 57.456 33.333 0.00 0.00 0.00 3.10
664 677 8.596271 AAGAGTAAAAGAAGTTGTAAGAGAGC 57.404 34.615 0.00 0.00 0.00 4.09
666 679 8.371699 AGAGTAAAAGAAGTTGTAAGAGAGCAT 58.628 33.333 0.00 0.00 0.00 3.79
667 680 8.910351 AGTAAAAGAAGTTGTAAGAGAGCATT 57.090 30.769 0.00 0.00 0.00 3.56
672 685 9.952188 AAAGAAGTTGTAAGAGAGCATTTAAAC 57.048 29.630 0.00 0.00 0.00 2.01
673 686 8.910351 AGAAGTTGTAAGAGAGCATTTAAACT 57.090 30.769 0.00 0.00 0.00 2.66
682 712 7.992754 AGAGAGCATTTAAACTTGATGAACT 57.007 32.000 0.00 0.00 0.00 3.01
687 717 6.944862 AGCATTTAAACTTGATGAACTCTCCT 59.055 34.615 0.00 0.00 0.00 3.69
691 721 4.363991 AACTTGATGAACTCTCCTTGCT 57.636 40.909 0.00 0.00 0.00 3.91
699 729 3.389329 TGAACTCTCCTTGCTCTGTTTCT 59.611 43.478 0.00 0.00 0.00 2.52
702 732 1.417517 TCTCCTTGCTCTGTTTCTGCA 59.582 47.619 0.00 0.00 34.69 4.41
705 735 0.236711 CTTGCTCTGTTTCTGCACCG 59.763 55.000 0.00 0.00 36.37 4.94
708 742 0.663153 GCTCTGTTTCTGCACCGTTT 59.337 50.000 0.00 0.00 0.00 3.60
710 744 1.670811 CTCTGTTTCTGCACCGTTTGT 59.329 47.619 0.00 0.00 0.00 2.83
713 747 0.030235 GTTTCTGCACCGTTTGTCCC 59.970 55.000 0.00 0.00 0.00 4.46
717 751 3.670377 GCACCGTTTGTCCCCTGC 61.670 66.667 0.00 0.00 0.00 4.85
721 756 1.528309 CCGTTTGTCCCCTGCAGTT 60.528 57.895 13.81 0.00 0.00 3.16
725 760 1.145571 TTTGTCCCCTGCAGTTACCT 58.854 50.000 13.81 0.00 0.00 3.08
743 778 3.644884 CCTGGCGTAGGTAGTATTGAG 57.355 52.381 0.27 0.00 42.00 3.02
744 779 2.288273 CCTGGCGTAGGTAGTATTGAGC 60.288 54.545 0.27 0.00 42.00 4.26
745 780 2.623889 CTGGCGTAGGTAGTATTGAGCT 59.376 50.000 0.00 0.00 0.00 4.09
746 781 2.621998 TGGCGTAGGTAGTATTGAGCTC 59.378 50.000 6.82 6.82 0.00 4.09
747 782 2.621998 GGCGTAGGTAGTATTGAGCTCA 59.378 50.000 13.74 13.74 0.00 4.26
748 783 3.550436 GGCGTAGGTAGTATTGAGCTCAC 60.550 52.174 18.03 5.16 0.00 3.51
749 784 3.550436 GCGTAGGTAGTATTGAGCTCACC 60.550 52.174 18.03 13.38 0.00 4.02
750 785 3.303857 CGTAGGTAGTATTGAGCTCACCG 60.304 52.174 18.03 0.00 0.00 4.94
751 786 2.736347 AGGTAGTATTGAGCTCACCGT 58.264 47.619 18.03 8.30 0.00 4.83
752 787 3.097614 AGGTAGTATTGAGCTCACCGTT 58.902 45.455 18.03 5.57 0.00 4.44
753 788 3.514309 AGGTAGTATTGAGCTCACCGTTT 59.486 43.478 18.03 4.06 0.00 3.60
754 789 3.864003 GGTAGTATTGAGCTCACCGTTTC 59.136 47.826 18.03 6.25 0.00 2.78
755 790 3.963428 AGTATTGAGCTCACCGTTTCT 57.037 42.857 18.03 6.56 0.00 2.52
756 791 3.851098 AGTATTGAGCTCACCGTTTCTC 58.149 45.455 18.03 1.65 0.00 2.87
757 792 3.511934 AGTATTGAGCTCACCGTTTCTCT 59.488 43.478 18.03 3.95 0.00 3.10
758 793 2.154854 TTGAGCTCACCGTTTCTCTG 57.845 50.000 18.03 0.00 0.00 3.35
759 794 1.328279 TGAGCTCACCGTTTCTCTGA 58.672 50.000 13.74 0.00 0.00 3.27
760 795 1.686587 TGAGCTCACCGTTTCTCTGAA 59.313 47.619 13.74 0.00 0.00 3.02
761 796 2.288457 TGAGCTCACCGTTTCTCTGAAG 60.288 50.000 13.74 0.00 0.00 3.02
762 797 0.793250 GCTCACCGTTTCTCTGAAGC 59.207 55.000 0.00 0.00 0.00 3.86
763 798 1.063806 CTCACCGTTTCTCTGAAGCG 58.936 55.000 9.05 9.05 0.00 4.68
764 799 0.671796 TCACCGTTTCTCTGAAGCGA 59.328 50.000 15.83 0.00 0.00 4.93
765 800 1.063806 CACCGTTTCTCTGAAGCGAG 58.936 55.000 15.83 9.62 0.00 5.03
766 801 0.674534 ACCGTTTCTCTGAAGCGAGT 59.325 50.000 15.83 10.12 32.83 4.18
767 802 1.884579 ACCGTTTCTCTGAAGCGAGTA 59.115 47.619 15.83 0.00 32.83 2.59
796 831 4.219288 AGGGTGCTCATTTTCAGAAATCAC 59.781 41.667 0.00 1.37 33.25 3.06
800 835 4.588106 TGCTCATTTTCAGAAATCACCCAA 59.412 37.500 0.00 0.00 33.25 4.12
805 840 6.207417 TCATTTTCAGAAATCACCCAACTCTC 59.793 38.462 0.00 0.00 33.25 3.20
827 862 0.528466 TTCTCGCACGAGCCATGATC 60.528 55.000 15.04 0.00 41.71 2.92
828 863 1.227060 CTCGCACGAGCCATGATCA 60.227 57.895 7.18 0.00 37.52 2.92
829 864 0.807275 CTCGCACGAGCCATGATCAA 60.807 55.000 7.18 0.00 37.52 2.57
830 865 0.179076 TCGCACGAGCCATGATCAAT 60.179 50.000 0.00 0.00 37.52 2.57
832 867 1.302366 GCACGAGCCATGATCAATGA 58.698 50.000 0.00 0.00 38.72 2.57
833 868 1.003116 GCACGAGCCATGATCAATGAC 60.003 52.381 0.00 0.00 38.72 3.06
834 869 1.600957 CACGAGCCATGATCAATGACC 59.399 52.381 0.00 0.00 38.72 4.02
835 870 0.863799 CGAGCCATGATCAATGACCG 59.136 55.000 0.00 0.00 38.72 4.79
837 872 1.162181 AGCCATGATCAATGACCGCG 61.162 55.000 0.00 0.00 38.72 6.46
838 873 1.944035 CCATGATCAATGACCGCGG 59.056 57.895 26.86 26.86 38.72 6.46
839 874 1.509644 CCATGATCAATGACCGCGGG 61.510 60.000 31.76 11.50 38.72 6.13
917 964 1.191096 GATGCGTTTTATTGCCAGCG 58.809 50.000 0.00 0.00 0.00 5.18
956 1003 1.442769 GACATGGAGAATGCACGTGT 58.557 50.000 18.38 0.00 41.42 4.49
959 1006 1.328680 CATGGAGAATGCACGTGTAGC 59.671 52.381 18.38 9.22 41.42 3.58
1058 1160 2.042259 TGACCGATACCGTGCGAGT 61.042 57.895 0.00 0.00 0.00 4.18
1113 1215 1.380650 GACCTTCCTCTCGGCTCCT 60.381 63.158 0.00 0.00 0.00 3.69
1114 1216 0.106619 GACCTTCCTCTCGGCTCCTA 60.107 60.000 0.00 0.00 0.00 2.94
1122 1227 3.477224 CTCGGCTCCTACGCTGCTC 62.477 68.421 0.00 0.00 36.24 4.26
1123 1228 4.914420 CGGCTCCTACGCTGCTCG 62.914 72.222 0.00 0.00 45.38 5.03
1124 1229 4.577246 GGCTCCTACGCTGCTCGG 62.577 72.222 0.00 0.00 43.86 4.63
1126 1231 4.577246 CTCCTACGCTGCTCGGCC 62.577 72.222 0.00 0.00 43.86 6.13
1150 1255 4.516195 GCCTCCCTTCCGTCTCGC 62.516 72.222 0.00 0.00 0.00 5.03
1199 1304 2.275318 CTTGCTTCCAGATTCCGACTC 58.725 52.381 0.00 0.00 0.00 3.36
1205 1310 0.818296 CCAGATTCCGACTCCGAGTT 59.182 55.000 1.71 0.00 38.22 3.01
1229 1337 3.937706 CCTCTGATGCAAGTTAACAGGAG 59.062 47.826 8.61 2.23 0.00 3.69
1230 1338 3.338249 TCTGATGCAAGTTAACAGGAGC 58.662 45.455 8.61 4.71 0.00 4.70
1231 1339 3.076621 CTGATGCAAGTTAACAGGAGCA 58.923 45.455 8.61 11.82 36.34 4.26
1242 1350 1.731720 ACAGGAGCATTTCTCGCTTC 58.268 50.000 0.00 0.00 42.82 3.86
1371 1494 1.241315 ACCGTTGGCTTGGTATGTGC 61.241 55.000 0.00 0.00 36.50 4.57
1374 1497 1.665679 CGTTGGCTTGGTATGTGCTAG 59.334 52.381 0.00 0.00 0.00 3.42
1375 1498 1.401905 GTTGGCTTGGTATGTGCTAGC 59.598 52.381 8.10 8.10 0.00 3.42
1379 1502 1.936547 GCTTGGTATGTGCTAGCACTC 59.063 52.381 39.44 29.35 46.30 3.51
1380 1503 2.419297 GCTTGGTATGTGCTAGCACTCT 60.419 50.000 39.44 30.03 46.30 3.24
1381 1504 3.181475 GCTTGGTATGTGCTAGCACTCTA 60.181 47.826 39.44 29.13 46.30 2.43
1382 1505 4.502259 GCTTGGTATGTGCTAGCACTCTAT 60.502 45.833 39.44 29.18 46.30 1.98
1383 1506 5.279006 GCTTGGTATGTGCTAGCACTCTATA 60.279 44.000 39.44 28.26 46.30 1.31
1384 1507 6.573289 GCTTGGTATGTGCTAGCACTCTATAT 60.573 42.308 39.44 28.56 46.30 0.86
1385 1508 6.272822 TGGTATGTGCTAGCACTCTATATG 57.727 41.667 39.44 0.00 46.30 1.78
1386 1509 5.775195 TGGTATGTGCTAGCACTCTATATGT 59.225 40.000 39.44 20.78 46.30 2.29
1387 1510 6.946009 TGGTATGTGCTAGCACTCTATATGTA 59.054 38.462 39.44 22.01 46.30 2.29
1388 1511 7.121315 TGGTATGTGCTAGCACTCTATATGTAG 59.879 40.741 39.44 0.00 46.30 2.74
1389 1512 7.121463 GGTATGTGCTAGCACTCTATATGTAGT 59.879 40.741 39.44 17.48 46.30 2.73
1391 1514 6.062095 TGTGCTAGCACTCTATATGTAGTCA 58.938 40.000 39.44 17.94 46.30 3.41
1392 1515 6.717084 TGTGCTAGCACTCTATATGTAGTCAT 59.283 38.462 39.44 0.00 46.30 3.06
1393 1516 7.026562 GTGCTAGCACTCTATATGTAGTCATG 58.973 42.308 35.25 0.00 43.12 3.07
1394 1517 6.717084 TGCTAGCACTCTATATGTAGTCATGT 59.283 38.462 14.93 0.00 35.70 3.21
1395 1518 7.231519 TGCTAGCACTCTATATGTAGTCATGTT 59.768 37.037 14.93 0.00 35.70 2.71
1396 1519 8.085296 GCTAGCACTCTATATGTAGTCATGTTT 58.915 37.037 10.63 0.00 35.70 2.83
1397 1520 9.973450 CTAGCACTCTATATGTAGTCATGTTTT 57.027 33.333 0.00 0.00 35.70 2.43
1419 1542 4.630894 TTTTTCAAGAACACGATGCAGT 57.369 36.364 0.00 0.00 0.00 4.40
1439 1562 1.153309 CTGCTGCATCGTCATGGGA 60.153 57.895 1.31 0.00 0.00 4.37
1442 1565 1.227764 CTGCATCGTCATGGGAGGG 60.228 63.158 0.00 0.00 0.00 4.30
1443 1566 2.111878 GCATCGTCATGGGAGGGG 59.888 66.667 0.00 0.00 0.00 4.79
1444 1567 2.111878 CATCGTCATGGGAGGGGC 59.888 66.667 0.00 0.00 0.00 5.80
1458 1589 2.171003 GAGGGGCTGCTAAACAAATGT 58.829 47.619 0.00 0.00 0.00 2.71
1484 1615 2.166870 TGAATGCACCATGGAAGAATGC 59.833 45.455 21.47 17.92 36.81 3.56
1491 1622 4.280174 GCACCATGGAAGAATGCTGATAAT 59.720 41.667 21.47 0.00 33.44 1.28
1492 1623 5.221382 GCACCATGGAAGAATGCTGATAATT 60.221 40.000 21.47 0.00 33.44 1.40
1493 1624 6.016024 GCACCATGGAAGAATGCTGATAATTA 60.016 38.462 21.47 0.00 33.44 1.40
1494 1625 7.470424 GCACCATGGAAGAATGCTGATAATTAA 60.470 37.037 21.47 0.00 33.44 1.40
1497 1628 8.582437 CCATGGAAGAATGCTGATAATTAACAT 58.418 33.333 5.56 0.00 0.00 2.71
1498 1629 9.406828 CATGGAAGAATGCTGATAATTAACATG 57.593 33.333 0.00 0.00 0.00 3.21
1499 1630 7.428020 TGGAAGAATGCTGATAATTAACATGC 58.572 34.615 0.00 3.71 0.00 4.06
1501 1632 6.005583 AGAATGCTGATAATTAACATGCCG 57.994 37.500 11.66 0.00 0.00 5.69
1502 1633 3.624326 TGCTGATAATTAACATGCCGC 57.376 42.857 11.66 6.34 0.00 6.53
1503 1634 2.293122 TGCTGATAATTAACATGCCGCC 59.707 45.455 11.66 0.00 0.00 6.13
1504 1635 2.554032 GCTGATAATTAACATGCCGCCT 59.446 45.455 0.00 0.00 0.00 5.52
1505 1636 3.365364 GCTGATAATTAACATGCCGCCTC 60.365 47.826 0.00 0.00 0.00 4.70
1507 1638 1.588674 TAATTAACATGCCGCCTCCG 58.411 50.000 0.00 0.00 0.00 4.63
1509 1640 1.095228 ATTAACATGCCGCCTCCGTG 61.095 55.000 0.00 0.00 0.00 4.94
1510 1641 3.673956 TAACATGCCGCCTCCGTGG 62.674 63.158 0.00 0.00 43.08 4.94
1513 2109 4.778143 ATGCCGCCTCCGTGGTTC 62.778 66.667 0.00 0.00 42.12 3.62
1518 2114 1.067582 CGCCTCCGTGGTTCTATCC 59.932 63.158 0.00 0.00 38.35 2.59
1542 2138 9.926158 TCCATCGTAATTACAGTTAGTTGTTTA 57.074 29.630 15.67 0.00 32.56 2.01
1565 2161 0.096454 GCCGTGTGTTAGGAAATCGC 59.904 55.000 0.00 0.00 0.00 4.58
1566 2162 0.725117 CCGTGTGTTAGGAAATCGCC 59.275 55.000 0.00 0.00 0.00 5.54
1571 2167 0.461339 TGTTAGGAAATCGCCGAGGC 60.461 55.000 3.59 3.59 37.85 4.70
1575 2171 2.186903 GAAATCGCCGAGGCCTCA 59.813 61.111 31.67 13.44 37.98 3.86
1590 2186 1.185618 CCTCAACGAGGTCCACAGGA 61.186 60.000 1.64 0.00 44.25 3.86
1669 2265 0.326264 GCCTCAGCTCCCTCTTTTCA 59.674 55.000 0.00 0.00 35.50 2.69
1687 2283 8.099364 TCTTTTCACTTCAAATGCTAGTAAGG 57.901 34.615 0.00 0.00 0.00 2.69
1688 2284 7.719633 TCTTTTCACTTCAAATGCTAGTAAGGT 59.280 33.333 0.00 0.00 0.00 3.50
1689 2285 6.801539 TTCACTTCAAATGCTAGTAAGGTG 57.198 37.500 0.00 0.00 0.00 4.00
1703 2304 6.594159 GCTAGTAAGGTGTGCTTCTTAATGAA 59.406 38.462 0.00 0.00 0.00 2.57
1712 2313 2.840752 GCTTCTTAATGAACTTTCGCGC 59.159 45.455 0.00 0.00 0.00 6.86
1714 2315 4.201685 GCTTCTTAATGAACTTTCGCGCTA 60.202 41.667 5.56 0.00 0.00 4.26
1728 2329 1.364626 GCGCTAATGCACTCTGCTGT 61.365 55.000 0.00 0.00 45.31 4.40
1764 2365 0.109597 GCATCAAAAGCACCCTCACG 60.110 55.000 0.00 0.00 0.00 4.35
1785 2386 2.028567 GGCAGCCATAGAGGTGAGATAC 60.029 54.545 6.55 0.00 40.61 2.24
1802 2403 7.382110 GTGAGATACACTGGACATTATATGCT 58.618 38.462 0.00 0.00 45.13 3.79
1803 2404 8.523658 GTGAGATACACTGGACATTATATGCTA 58.476 37.037 0.00 0.00 45.13 3.49
1804 2405 8.523658 TGAGATACACTGGACATTATATGCTAC 58.476 37.037 0.00 0.00 0.00 3.58
1805 2406 8.422577 AGATACACTGGACATTATATGCTACA 57.577 34.615 0.00 0.00 0.00 2.74
1806 2407 8.307483 AGATACACTGGACATTATATGCTACAC 58.693 37.037 0.00 0.00 0.00 2.90
1807 2408 6.485830 ACACTGGACATTATATGCTACACT 57.514 37.500 0.00 0.00 0.00 3.55
1808 2409 6.516718 ACACTGGACATTATATGCTACACTC 58.483 40.000 0.00 0.00 0.00 3.51
1809 2410 6.098266 ACACTGGACATTATATGCTACACTCA 59.902 38.462 0.00 0.00 0.00 3.41
1810 2411 6.986231 CACTGGACATTATATGCTACACTCAA 59.014 38.462 0.00 0.00 0.00 3.02
1811 2412 6.986817 ACTGGACATTATATGCTACACTCAAC 59.013 38.462 0.00 0.00 0.00 3.18
1812 2413 6.883744 TGGACATTATATGCTACACTCAACA 58.116 36.000 0.00 0.00 0.00 3.33
1813 2414 6.761242 TGGACATTATATGCTACACTCAACAC 59.239 38.462 0.00 0.00 0.00 3.32
1814 2415 6.761242 GGACATTATATGCTACACTCAACACA 59.239 38.462 0.00 0.00 0.00 3.72
1815 2416 7.042456 GGACATTATATGCTACACTCAACACAG 60.042 40.741 0.00 0.00 0.00 3.66
1816 2417 6.258727 ACATTATATGCTACACTCAACACAGC 59.741 38.462 0.00 0.00 0.00 4.40
1817 2418 2.847327 ATGCTACACTCAACACAGCT 57.153 45.000 0.00 0.00 33.38 4.24
1818 2419 2.620251 TGCTACACTCAACACAGCTT 57.380 45.000 0.00 0.00 33.38 3.74
1822 2423 3.499918 GCTACACTCAACACAGCTTGATT 59.500 43.478 3.37 0.00 29.71 2.57
1825 2426 4.450976 ACACTCAACACAGCTTGATTGTA 58.549 39.130 7.20 0.00 40.40 2.41
1829 2430 6.000219 ACTCAACACAGCTTGATTGTAATCT 59.000 36.000 6.21 0.00 36.39 2.40
1836 2437 9.182214 ACACAGCTTGATTGTAATCTATTTCAT 57.818 29.630 6.21 0.00 36.39 2.57
1871 2472 2.821969 ACATCGGCTGAAGCTTTGAAAT 59.178 40.909 0.00 0.00 41.70 2.17
1872 2473 3.119708 ACATCGGCTGAAGCTTTGAAATC 60.120 43.478 0.00 0.00 41.70 2.17
1908 2509 0.385029 CAGAGCTCGTCCCATCTCTG 59.615 60.000 8.37 4.05 44.18 3.35
1909 2510 1.067250 GAGCTCGTCCCATCTCTGC 59.933 63.158 0.00 0.00 0.00 4.26
1911 2512 1.067250 GCTCGTCCCATCTCTGCTC 59.933 63.158 0.00 0.00 0.00 4.26
1935 2536 3.252701 CCTTGGCACTGAATGATGCTATC 59.747 47.826 0.00 0.00 41.74 2.08
1941 2542 5.646793 GGCACTGAATGATGCTATCACATAT 59.353 40.000 1.65 0.00 43.01 1.78
1952 2553 6.239217 TGCTATCACATATGACAAGGTCTT 57.761 37.500 10.38 0.00 37.79 3.01
1953 2554 6.653020 TGCTATCACATATGACAAGGTCTTT 58.347 36.000 10.38 0.00 37.79 2.52
1985 2586 3.380004 TGGCTTCTGGCAATTAATTACCG 59.620 43.478 11.97 7.65 46.03 4.02
1986 2587 3.372060 GCTTCTGGCAATTAATTACCGC 58.628 45.455 11.97 6.69 41.35 5.68
1994 2595 4.739716 GGCAATTAATTACCGCTTCACATG 59.260 41.667 1.60 0.00 0.00 3.21
2010 2611 2.027929 CACATGGAAGTAACCGGTGGTA 60.028 50.000 8.52 0.00 33.12 3.25
2027 2628 4.243270 GTGGTACTACTGGCTGTTAACTG 58.757 47.826 7.22 7.67 0.00 3.16
2150 2751 3.070159 AGTTAAGCTCTGCAGTTGACAGA 59.930 43.478 14.67 0.00 41.78 3.41
2164 2765 5.065218 CAGTTGACAGACTAACAAGTTGCTT 59.935 40.000 1.81 0.00 0.00 3.91
2180 2781 1.134848 TGCTTGGCCTTGTTGTTTGAC 60.135 47.619 3.32 0.00 0.00 3.18
2344 2945 5.822519 TGATCCAAATAGCAGGTGTGATAAC 59.177 40.000 0.00 0.00 0.00 1.89
2443 3052 6.463995 TCACAGGCACTTAAGAAAACATTT 57.536 33.333 10.09 0.00 34.60 2.32
2528 3137 0.953960 CGGTTCAAGTGGGCAGGTAC 60.954 60.000 0.00 0.00 0.00 3.34
2538 3147 1.555075 TGGGCAGGTACTCATTCACTC 59.445 52.381 0.00 0.00 34.60 3.51
2539 3148 1.555075 GGGCAGGTACTCATTCACTCA 59.445 52.381 0.00 0.00 34.60 3.41
2553 3162 1.534235 ACTCAGCCAGACCGGAGTT 60.534 57.895 9.46 0.00 37.01 3.01
2567 3176 3.951680 ACCGGAGTTTGTCTGTTCATTTT 59.048 39.130 9.46 0.00 0.00 1.82
2569 3178 4.976116 CCGGAGTTTGTCTGTTCATTTTTC 59.024 41.667 0.00 0.00 0.00 2.29
2572 3181 6.209361 GGAGTTTGTCTGTTCATTTTTCCTC 58.791 40.000 0.00 0.00 0.00 3.71
2573 3182 6.039829 GGAGTTTGTCTGTTCATTTTTCCTCT 59.960 38.462 0.00 0.00 0.00 3.69
2574 3183 6.799512 AGTTTGTCTGTTCATTTTTCCTCTG 58.200 36.000 0.00 0.00 0.00 3.35
2575 3184 6.378280 AGTTTGTCTGTTCATTTTTCCTCTGT 59.622 34.615 0.00 0.00 0.00 3.41
2576 3185 5.756195 TGTCTGTTCATTTTTCCTCTGTG 57.244 39.130 0.00 0.00 0.00 3.66
2577 3186 5.192927 TGTCTGTTCATTTTTCCTCTGTGT 58.807 37.500 0.00 0.00 0.00 3.72
2591 3200 5.571285 TCCTCTGTGTATATAGGCCTAGTG 58.429 45.833 19.33 4.40 0.00 2.74
2594 3203 5.948842 TCTGTGTATATAGGCCTAGTGTGA 58.051 41.667 19.33 5.47 0.00 3.58
2595 3204 5.768662 TCTGTGTATATAGGCCTAGTGTGAC 59.231 44.000 19.33 12.04 0.00 3.67
2596 3205 5.702266 TGTGTATATAGGCCTAGTGTGACT 58.298 41.667 19.33 1.50 0.00 3.41
2605 3215 4.345257 AGGCCTAGTGTGACTAATACATGG 59.655 45.833 1.29 0.00 29.00 3.66
2611 3221 8.807118 CCTAGTGTGACTAATACATGGTGATAT 58.193 37.037 0.00 0.00 29.00 1.63
2612 3222 9.631452 CTAGTGTGACTAATACATGGTGATATG 57.369 37.037 0.00 0.00 29.00 1.78
2617 3227 8.786898 GTGACTAATACATGGTGATATGCATTT 58.213 33.333 3.54 0.00 29.36 2.32
2618 3228 9.353431 TGACTAATACATGGTGATATGCATTTT 57.647 29.630 3.54 0.00 29.36 1.82
2625 3235 8.651391 ACATGGTGATATGCATTTTAATTGTG 57.349 30.769 3.54 0.00 0.00 3.33
2626 3236 8.259411 ACATGGTGATATGCATTTTAATTGTGT 58.741 29.630 3.54 0.00 0.00 3.72
2627 3237 8.757789 CATGGTGATATGCATTTTAATTGTGTC 58.242 33.333 3.54 0.00 0.00 3.67
2628 3238 8.065473 TGGTGATATGCATTTTAATTGTGTCT 57.935 30.769 3.54 0.00 0.00 3.41
2629 3239 9.183368 TGGTGATATGCATTTTAATTGTGTCTA 57.817 29.630 3.54 0.00 0.00 2.59
2630 3240 9.450807 GGTGATATGCATTTTAATTGTGTCTAC 57.549 33.333 3.54 0.00 0.00 2.59
2671 3281 3.621268 TCGACAAAATATTTGGGCGAGAG 59.379 43.478 26.32 2.34 46.12 3.20
2683 3293 2.578178 CGAGAGGACGCGCAAGAG 60.578 66.667 5.73 0.00 45.38 2.85
2698 3308 0.043940 AAGAGCCTGATCCAGAGGGT 59.956 55.000 2.10 2.10 44.16 4.34
2714 3324 2.670148 GGTAGGGTGCCTCAGTGGG 61.670 68.421 0.00 0.00 34.61 4.61
2716 3326 3.188355 TAGGGTGCCTCAGTGGGGT 62.188 63.158 11.68 0.00 34.61 4.95
2718 3328 2.670148 GGGTGCCTCAGTGGGGTAG 61.670 68.421 11.68 0.00 36.00 3.18
2728 3338 1.741770 GTGGGGTAGCGCTTCTGTG 60.742 63.158 18.68 0.00 0.00 3.66
2749 3359 3.569701 TGCAGGAAATGAAGGACAAGTTC 59.430 43.478 0.00 0.00 0.00 3.01
2753 3363 4.697352 AGGAAATGAAGGACAAGTTCATCG 59.303 41.667 0.00 0.00 42.58 3.84
2790 3400 2.074576 TCGTCAGGTCACTTCTACTCG 58.925 52.381 0.00 0.00 0.00 4.18
2799 3421 5.181622 AGGTCACTTCTACTCGTAACTTCTG 59.818 44.000 0.00 0.00 0.00 3.02
2800 3422 5.048852 GGTCACTTCTACTCGTAACTTCTGT 60.049 44.000 0.00 0.00 0.00 3.41
2806 3428 6.520792 TCTACTCGTAACTTCTGTTTTTGC 57.479 37.500 0.00 0.00 37.59 3.68
2811 3433 8.773404 ACTCGTAACTTCTGTTTTTGCTATAT 57.227 30.769 0.00 0.00 37.59 0.86
2822 3444 9.906660 TCTGTTTTTGCTATATACCACTTTTTG 57.093 29.630 0.00 0.00 0.00 2.44
2823 3445 9.906660 CTGTTTTTGCTATATACCACTTTTTGA 57.093 29.630 0.00 0.00 0.00 2.69
2831 3453 8.709646 GCTATATACCACTTTTTGATAAGTCCG 58.290 37.037 0.00 0.00 36.24 4.79
2832 3454 9.760077 CTATATACCACTTTTTGATAAGTCCGT 57.240 33.333 0.00 0.00 36.24 4.69
2861 3483 5.413833 AGCTGTGATTTCAGTCTAACCAATG 59.586 40.000 0.00 0.00 37.70 2.82
2865 3487 5.048083 GTGATTTCAGTCTAACCAATGCCAA 60.048 40.000 0.00 0.00 0.00 4.52
2968 3590 4.740822 GACTGCCGGCCATGGGTT 62.741 66.667 26.77 0.00 0.00 4.11
2989 3611 1.080705 GAAGTACCAGCGCAGTCGT 60.081 57.895 11.47 1.60 38.14 4.34
3004 3626 1.072678 TCGTGAGACAGTCTCCCGT 59.927 57.895 27.87 0.00 43.27 5.28
3007 3629 1.823797 GTGAGACAGTCTCCCGTACT 58.176 55.000 25.11 0.00 42.73 2.73
3044 3667 5.716228 AGGATTTAATGGACATGTTCAAGCA 59.284 36.000 11.76 0.00 0.00 3.91
3048 3671 1.236616 TGGACATGTTCAAGCAGCCG 61.237 55.000 3.69 0.00 0.00 5.52
3060 3683 4.146058 CAGCCGATGCCAATGCTA 57.854 55.556 0.00 0.00 38.69 3.49
3068 3691 1.672881 GATGCCAATGCTACAGGACAC 59.327 52.381 0.00 0.00 38.71 3.67
3088 3711 7.935755 AGGACACATATATGTTCTGAAATCCTG 59.064 37.037 15.85 3.19 37.03 3.86
3089 3712 7.308229 GGACACATATATGTTCTGAAATCCTGC 60.308 40.741 15.85 0.00 39.39 4.85
3097 3727 9.860898 ATATGTTCTGAAATCCTGCTTTTTAAC 57.139 29.630 0.00 0.00 0.00 2.01
3101 3731 5.181245 TCTGAAATCCTGCTTTTTAACCTCG 59.819 40.000 0.00 0.00 0.00 4.63
3114 3744 4.811969 TTAACCTCGGCTTCTGAATGTA 57.188 40.909 0.00 0.00 0.00 2.29
3121 3753 6.045318 CCTCGGCTTCTGAATGTATATATGG 58.955 44.000 0.00 0.00 0.00 2.74
3127 3759 7.331026 GCTTCTGAATGTATATATGGCAGGTA 58.669 38.462 10.62 0.00 0.00 3.08
3274 3906 0.464036 TATCTGCGAGCGATTGGGTT 59.536 50.000 7.47 0.00 0.00 4.11
3338 3970 3.059800 GGCTGAGTCTTGTCGTGTTTTAC 60.060 47.826 0.00 0.00 0.00 2.01
3415 4050 5.705609 TTTTAGTTGTTGGAGCTGATTCC 57.294 39.130 0.00 0.00 37.77 3.01
3428 4063 0.033920 TGATTCCGGCAGATCCATCG 59.966 55.000 0.00 0.00 34.01 3.84
3462 4097 0.029567 CGAGGTGAGTAGATCGGCAC 59.970 60.000 0.00 0.00 0.00 5.01
3521 4156 1.829849 GTAAAACCCTACTCGGCCTCT 59.170 52.381 0.00 0.00 0.00 3.69
3559 4194 3.946308 TGTTGTCTATCGACTAGCTCG 57.054 47.619 0.00 8.00 44.44 5.03
3580 4215 6.674694 TCGGTCTCGGCTTATATAAGATAC 57.325 41.667 23.84 12.65 34.71 2.24
3593 4228 3.161450 GATACTGCGGCCCCTGGA 61.161 66.667 0.00 0.00 0.00 3.86
3596 4231 0.766674 ATACTGCGGCCCCTGGATTA 60.767 55.000 0.00 0.00 0.00 1.75
3606 4241 2.166254 GCCCCTGGATTACACAAACATG 59.834 50.000 0.00 0.00 0.00 3.21
3610 4245 3.126858 CCTGGATTACACAAACATGGTCG 59.873 47.826 0.00 0.00 0.00 4.79
3617 4252 1.094785 ACAAACATGGTCGGCTATGC 58.905 50.000 13.80 0.00 37.12 3.14
3671 4308 2.675658 AGGAGAGTCCTCTATGGCTC 57.324 55.000 0.00 0.00 45.66 4.70
3751 4388 1.609239 GACATGATGGCCCAGGACA 59.391 57.895 0.00 0.00 37.65 4.02
3798 4435 1.349688 TGGCCTACTTGGAACGACAAT 59.650 47.619 3.32 0.00 38.35 2.71
3876 4520 2.969238 CGGCATCCTGATCGGCAC 60.969 66.667 0.00 0.00 0.00 5.01
3887 4531 1.764723 TGATCGGCACTGATCCTCAAT 59.235 47.619 15.22 0.00 43.34 2.57
3889 4533 3.006217 TGATCGGCACTGATCCTCAATAG 59.994 47.826 15.22 0.00 43.34 1.73
3891 4535 2.362397 TCGGCACTGATCCTCAATAGTC 59.638 50.000 0.00 0.00 0.00 2.59
3893 4537 3.181471 CGGCACTGATCCTCAATAGTCTT 60.181 47.826 0.00 0.00 0.00 3.01
3894 4538 4.376146 GGCACTGATCCTCAATAGTCTTC 58.624 47.826 0.00 0.00 0.00 2.87
3951 4598 5.514274 TCCCTTGAAAGTGAATGTTTGTC 57.486 39.130 0.00 0.00 0.00 3.18
3952 4599 4.952957 TCCCTTGAAAGTGAATGTTTGTCA 59.047 37.500 0.00 0.00 0.00 3.58
4023 4670 6.073548 TGAGAGAAAAGCTTCGTTTGATCTTC 60.074 38.462 0.00 0.00 36.61 2.87
4038 4685 7.250569 GTTTGATCTTCAATTGCCGATTAAGA 58.749 34.615 0.00 4.08 36.11 2.10
4130 4777 4.954118 TGACGTCCAGTGGCCCCT 62.954 66.667 14.12 0.00 0.00 4.79
4194 4841 9.898152 TGGACTTTTTCCTTTTAAAATTCATGT 57.102 25.926 0.09 0.00 46.10 3.21
4203 4850 9.691362 TCCTTTTAAAATTCATGTAACTTCTGC 57.309 29.630 0.09 0.00 0.00 4.26
4205 4852 9.696917 CTTTTAAAATTCATGTAACTTCTGCCT 57.303 29.630 0.09 0.00 0.00 4.75
4215 4862 3.432051 CTTCTGCCTCGTAGCCCCG 62.432 68.421 0.00 0.00 0.00 5.73
4216 4863 3.949885 TTCTGCCTCGTAGCCCCGA 62.950 63.158 0.00 0.00 35.22 5.14
4223 4870 4.514577 CGTAGCCCCGAGCCACAG 62.515 72.222 0.00 0.00 45.47 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 9.003658 TCAGTCTTTCCAAAAGAATCATTCTAC 57.996 33.333 0.00 0.00 39.61 2.59
14 15 8.647256 ATCAGTCTTTCCAAAAGAATCATTCT 57.353 30.769 3.82 0.00 43.15 2.40
15 16 7.972832 GGATCAGTCTTTCCAAAAGAATCATTC 59.027 37.037 3.82 0.00 33.44 2.67
22 23 5.940617 TGAAGGATCAGTCTTTCCAAAAGA 58.059 37.500 0.00 0.00 39.10 2.52
51 52 3.088532 TGAATAGACGGCAAGGCAAATT 58.911 40.909 0.00 0.00 0.00 1.82
58 59 5.873179 TTAAACCTTGAATAGACGGCAAG 57.127 39.130 0.00 0.00 38.90 4.01
60 61 5.818857 GGTATTAAACCTTGAATAGACGGCA 59.181 40.000 0.00 0.00 45.75 5.69
76 77 5.836024 AACAGTCTGAGGGTGGTATTAAA 57.164 39.130 6.91 0.00 0.00 1.52
79 80 3.394606 ACAAACAGTCTGAGGGTGGTATT 59.605 43.478 6.91 0.00 0.00 1.89
86 87 2.290260 TGGCATACAAACAGTCTGAGGG 60.290 50.000 6.91 0.00 0.00 4.30
99 100 0.908910 ACCGATTCAGGTGGCATACA 59.091 50.000 0.00 0.00 44.07 2.29
100 101 2.102588 AGTACCGATTCAGGTGGCATAC 59.897 50.000 9.51 0.00 45.54 2.39
114 115 8.742777 ACTCAATTATAGTTGTAACAGTACCGA 58.257 33.333 7.73 0.00 0.00 4.69
131 132 9.178758 GTCTGAAAGGGTCAATTACTCAATTAT 57.821 33.333 0.00 0.00 35.22 1.28
132 133 7.610305 GGTCTGAAAGGGTCAATTACTCAATTA 59.390 37.037 0.00 0.00 35.22 1.40
133 134 6.434340 GGTCTGAAAGGGTCAATTACTCAATT 59.566 38.462 0.00 0.00 35.22 2.32
134 135 5.946377 GGTCTGAAAGGGTCAATTACTCAAT 59.054 40.000 0.00 0.00 35.22 2.57
135 136 5.073144 AGGTCTGAAAGGGTCAATTACTCAA 59.927 40.000 0.00 0.00 35.22 3.02
136 137 4.597507 AGGTCTGAAAGGGTCAATTACTCA 59.402 41.667 0.00 0.00 35.22 3.41
137 138 4.938226 CAGGTCTGAAAGGGTCAATTACTC 59.062 45.833 0.00 0.00 35.22 2.59
138 139 4.597507 TCAGGTCTGAAAGGGTCAATTACT 59.402 41.667 0.00 0.00 36.53 2.24
139 140 4.906618 TCAGGTCTGAAAGGGTCAATTAC 58.093 43.478 0.00 0.00 36.53 1.89
140 141 5.576563 TTCAGGTCTGAAAGGGTCAATTA 57.423 39.130 10.61 0.00 45.56 1.40
177 178 5.937540 TGGAGAACAAAGTATGTACCACATG 59.062 40.000 2.07 0.00 42.99 3.21
181 182 6.367374 TGATGGAGAACAAAGTATGTACCA 57.633 37.500 0.00 0.00 42.99 3.25
182 183 7.103641 TCTTGATGGAGAACAAAGTATGTACC 58.896 38.462 0.00 0.00 42.99 3.34
183 184 8.547967 TTCTTGATGGAGAACAAAGTATGTAC 57.452 34.615 0.00 0.00 42.99 2.90
219 220 3.428862 CCCAGGCCAAAATTATCACGTTC 60.429 47.826 5.01 0.00 0.00 3.95
222 223 2.099405 ACCCAGGCCAAAATTATCACG 58.901 47.619 5.01 0.00 0.00 4.35
235 237 2.932187 GCAACATGATGAAAACCCAGGC 60.932 50.000 7.22 0.00 0.00 4.85
238 240 1.622811 GGGCAACATGATGAAAACCCA 59.377 47.619 7.22 0.00 36.07 4.51
241 243 4.525912 AGAAGGGCAACATGATGAAAAC 57.474 40.909 7.22 0.00 39.74 2.43
253 255 2.563798 CGGCTGCAAAGAAGGGCAA 61.564 57.895 0.50 0.00 39.93 4.52
276 278 3.363673 GGACGATTTCTCCGTTCACAAAC 60.364 47.826 0.00 0.00 40.67 2.93
393 395 0.031414 GGTAGGCCTGGTTCTCCCTA 60.031 60.000 17.99 0.00 0.00 3.53
505 510 1.129251 CAATGCAGCAAAGACGACGAT 59.871 47.619 0.00 0.00 0.00 3.73
560 565 5.981315 CAGTTCTTAACCTACAGTTCGTGAA 59.019 40.000 0.00 0.00 40.05 3.18
561 566 5.526115 CAGTTCTTAACCTACAGTTCGTGA 58.474 41.667 0.00 0.00 40.05 4.35
562 567 4.150098 GCAGTTCTTAACCTACAGTTCGTG 59.850 45.833 0.00 0.00 40.05 4.35
563 568 4.202182 TGCAGTTCTTAACCTACAGTTCGT 60.202 41.667 0.00 0.00 40.05 3.85
596 601 5.824097 ACCGTTACCAAAACAACTCACTTAT 59.176 36.000 0.00 0.00 0.00 1.73
649 662 9.387123 CAAGTTTAAATGCTCTCTTACAACTTC 57.613 33.333 0.00 0.00 31.23 3.01
651 664 8.677148 TCAAGTTTAAATGCTCTCTTACAACT 57.323 30.769 0.00 0.00 0.00 3.16
652 665 9.334693 CATCAAGTTTAAATGCTCTCTTACAAC 57.665 33.333 0.00 0.00 0.00 3.32
654 667 8.846943 TCATCAAGTTTAAATGCTCTCTTACA 57.153 30.769 0.00 0.00 0.00 2.41
655 668 9.548208 GTTCATCAAGTTTAAATGCTCTCTTAC 57.452 33.333 0.00 0.00 0.00 2.34
657 670 8.401490 AGTTCATCAAGTTTAAATGCTCTCTT 57.599 30.769 0.00 0.00 0.00 2.85
658 671 7.882271 AGAGTTCATCAAGTTTAAATGCTCTCT 59.118 33.333 0.00 0.26 31.76 3.10
660 673 7.120432 GGAGAGTTCATCAAGTTTAAATGCTCT 59.880 37.037 0.00 0.00 0.00 4.09
661 674 7.120432 AGGAGAGTTCATCAAGTTTAAATGCTC 59.880 37.037 0.00 0.00 0.00 4.26
662 675 6.944862 AGGAGAGTTCATCAAGTTTAAATGCT 59.055 34.615 0.00 0.00 0.00 3.79
664 677 7.540055 GCAAGGAGAGTTCATCAAGTTTAAATG 59.460 37.037 0.00 0.00 0.00 2.32
666 679 6.772716 AGCAAGGAGAGTTCATCAAGTTTAAA 59.227 34.615 0.00 0.00 0.00 1.52
667 680 6.299141 AGCAAGGAGAGTTCATCAAGTTTAA 58.701 36.000 0.00 0.00 0.00 1.52
669 682 4.723309 AGCAAGGAGAGTTCATCAAGTTT 58.277 39.130 0.00 0.00 0.00 2.66
670 683 4.041444 AGAGCAAGGAGAGTTCATCAAGTT 59.959 41.667 0.00 0.00 0.00 2.66
671 684 3.582208 AGAGCAAGGAGAGTTCATCAAGT 59.418 43.478 0.00 0.00 0.00 3.16
672 685 3.933955 CAGAGCAAGGAGAGTTCATCAAG 59.066 47.826 0.00 0.00 0.00 3.02
673 686 3.326006 ACAGAGCAAGGAGAGTTCATCAA 59.674 43.478 0.00 0.00 0.00 2.57
682 712 1.417517 TGCAGAAACAGAGCAAGGAGA 59.582 47.619 0.00 0.00 34.97 3.71
687 717 0.463654 ACGGTGCAGAAACAGAGCAA 60.464 50.000 0.00 0.00 40.35 3.91
691 721 1.668751 GACAAACGGTGCAGAAACAGA 59.331 47.619 0.00 0.00 0.00 3.41
699 729 2.203280 CAGGGGACAAACGGTGCA 60.203 61.111 0.00 0.00 40.06 4.57
702 732 2.113139 CTGCAGGGGACAAACGGT 59.887 61.111 5.57 0.00 0.00 4.83
705 735 1.244816 GGTAACTGCAGGGGACAAAC 58.755 55.000 19.93 4.88 0.00 2.93
725 760 2.621998 GAGCTCAATACTACCTACGCCA 59.378 50.000 9.40 0.00 0.00 5.69
739 774 1.686587 TCAGAGAAACGGTGAGCTCAA 59.313 47.619 20.19 0.00 0.00 3.02
740 775 1.328279 TCAGAGAAACGGTGAGCTCA 58.672 50.000 13.74 13.74 0.00 4.26
741 776 2.333014 CTTCAGAGAAACGGTGAGCTC 58.667 52.381 6.82 6.82 0.00 4.09
742 777 1.606737 GCTTCAGAGAAACGGTGAGCT 60.607 52.381 0.00 0.00 0.00 4.09
743 778 0.793250 GCTTCAGAGAAACGGTGAGC 59.207 55.000 0.00 0.00 0.00 4.26
744 779 1.063806 CGCTTCAGAGAAACGGTGAG 58.936 55.000 0.00 0.00 0.00 3.51
745 780 0.671796 TCGCTTCAGAGAAACGGTGA 59.328 50.000 3.19 0.00 0.00 4.02
746 781 1.063806 CTCGCTTCAGAGAAACGGTG 58.936 55.000 3.19 0.00 40.57 4.94
747 782 0.674534 ACTCGCTTCAGAGAAACGGT 59.325 50.000 0.62 0.00 40.57 4.83
748 783 2.520979 CTACTCGCTTCAGAGAAACGG 58.479 52.381 0.62 0.00 40.57 4.44
749 784 1.914700 GCTACTCGCTTCAGAGAAACG 59.085 52.381 0.62 0.00 40.57 3.60
750 785 2.920490 CTGCTACTCGCTTCAGAGAAAC 59.080 50.000 0.62 0.00 40.57 2.78
751 786 2.672478 GCTGCTACTCGCTTCAGAGAAA 60.672 50.000 0.62 0.00 40.57 2.52
752 787 1.135257 GCTGCTACTCGCTTCAGAGAA 60.135 52.381 0.62 0.00 40.57 2.87
753 788 0.453793 GCTGCTACTCGCTTCAGAGA 59.546 55.000 0.62 0.00 40.57 3.10
754 789 0.172127 TGCTGCTACTCGCTTCAGAG 59.828 55.000 0.00 0.00 43.56 3.35
755 790 0.172127 CTGCTGCTACTCGCTTCAGA 59.828 55.000 0.00 0.00 39.39 3.27
756 791 0.805322 CCTGCTGCTACTCGCTTCAG 60.805 60.000 0.00 0.00 40.11 3.02
757 792 1.216444 CCTGCTGCTACTCGCTTCA 59.784 57.895 0.00 0.00 40.11 3.02
758 793 1.520342 CCCTGCTGCTACTCGCTTC 60.520 63.158 0.00 0.00 40.11 3.86
759 794 2.286523 ACCCTGCTGCTACTCGCTT 61.287 57.895 0.00 0.00 40.11 4.68
760 795 2.681778 ACCCTGCTGCTACTCGCT 60.682 61.111 0.00 0.00 40.11 4.93
761 796 2.510238 CACCCTGCTGCTACTCGC 60.510 66.667 0.00 0.00 39.77 5.03
762 797 2.510238 GCACCCTGCTGCTACTCG 60.510 66.667 0.00 0.00 40.96 4.18
777 812 4.151121 TGGGTGATTTCTGAAAATGAGCA 58.849 39.130 6.95 0.00 37.96 4.26
796 831 0.318441 TGCGAGAACAGAGAGTTGGG 59.682 55.000 0.00 0.00 41.51 4.12
800 835 0.519519 CTCGTGCGAGAACAGAGAGT 59.480 55.000 15.65 0.00 44.53 3.24
805 840 1.446792 ATGGCTCGTGCGAGAACAG 60.447 57.895 23.57 0.00 44.53 3.16
849 884 0.981183 TCCACATTGTTACCGAGCCT 59.019 50.000 0.00 0.00 0.00 4.58
909 956 3.276091 CCACACGTTCGCTGGCAA 61.276 61.111 0.00 0.00 0.00 4.52
910 957 4.539083 ACCACACGTTCGCTGGCA 62.539 61.111 8.73 0.00 0.00 4.92
911 958 4.012895 CACCACACGTTCGCTGGC 62.013 66.667 8.73 0.00 0.00 4.85
917 964 2.677003 CCATCGCCACCACACGTTC 61.677 63.158 0.00 0.00 0.00 3.95
956 1003 2.499205 CAGCGAATCACGGGGCTA 59.501 61.111 0.00 0.00 42.83 3.93
959 1006 2.587322 TAAGGCAGCGAATCACGGGG 62.587 60.000 0.00 0.00 42.83 5.73
1047 1149 1.080772 CTTGAGCACTCGCACGGTA 60.081 57.895 0.00 0.00 42.27 4.02
1058 1160 0.318441 CACTCCCTTCGACTTGAGCA 59.682 55.000 4.62 0.00 0.00 4.26
1179 1284 2.275318 GAGTCGGAATCTGGAAGCAAG 58.725 52.381 0.00 0.00 0.00 4.01
1180 1285 1.066143 GGAGTCGGAATCTGGAAGCAA 60.066 52.381 5.36 0.00 0.00 3.91
1205 1310 4.041567 TCCTGTTAACTTGCATCAGAGGAA 59.958 41.667 7.22 0.00 0.00 3.36
1229 1337 0.741221 ACGGAGGAAGCGAGAAATGC 60.741 55.000 0.00 0.00 0.00 3.56
1230 1338 1.002366 CACGGAGGAAGCGAGAAATG 58.998 55.000 0.00 0.00 0.00 2.32
1231 1339 0.741221 GCACGGAGGAAGCGAGAAAT 60.741 55.000 0.00 0.00 0.00 2.17
1242 1350 0.742281 CACCTGAATCTGCACGGAGG 60.742 60.000 0.00 0.00 0.00 4.30
1290 1398 2.267324 GAGCCTCTTCGCAAGCCT 59.733 61.111 0.00 0.00 37.18 4.58
1291 1399 2.105466 CAGAGCCTCTTCGCAAGCC 61.105 63.158 0.00 0.00 37.18 4.35
1352 1475 1.241315 GCACATACCAAGCCAACGGT 61.241 55.000 0.00 0.00 39.41 4.83
1371 1494 9.973450 AAAACATGACTACATATAGAGTGCTAG 57.027 33.333 0.00 0.00 35.09 3.42
1399 1522 4.597079 GAACTGCATCGTGTTCTTGAAAA 58.403 39.130 8.81 0.00 39.36 2.29
1400 1523 4.209452 GAACTGCATCGTGTTCTTGAAA 57.791 40.909 8.81 0.00 39.36 2.69
1401 1524 3.878086 GAACTGCATCGTGTTCTTGAA 57.122 42.857 8.81 0.00 39.36 2.69
1419 1542 0.745486 CCCATGACGATGCAGCAGAA 60.745 55.000 1.53 0.00 0.00 3.02
1431 1554 1.635817 TTAGCAGCCCCTCCCATGAC 61.636 60.000 0.00 0.00 0.00 3.06
1439 1562 2.309136 ACATTTGTTTAGCAGCCCCT 57.691 45.000 0.00 0.00 0.00 4.79
1442 1565 3.848272 TGCTACATTTGTTTAGCAGCC 57.152 42.857 4.45 0.00 40.21 4.85
1443 1566 4.985413 TCATGCTACATTTGTTTAGCAGC 58.015 39.130 12.28 5.24 46.84 5.25
1444 1567 7.445900 CATTCATGCTACATTTGTTTAGCAG 57.554 36.000 12.28 6.50 46.84 4.24
1465 1596 2.167693 CAGCATTCTTCCATGGTGCATT 59.832 45.455 22.20 4.09 43.66 3.56
1470 1601 7.560991 TGTTAATTATCAGCATTCTTCCATGGT 59.439 33.333 12.58 0.00 35.18 3.55
1471 1602 7.944061 TGTTAATTATCAGCATTCTTCCATGG 58.056 34.615 4.97 4.97 0.00 3.66
1472 1603 9.406828 CATGTTAATTATCAGCATTCTTCCATG 57.593 33.333 2.86 0.00 0.00 3.66
1484 1615 3.189287 GGAGGCGGCATGTTAATTATCAG 59.811 47.826 13.08 0.00 0.00 2.90
1491 1622 1.743623 CACGGAGGCGGCATGTTAA 60.744 57.895 13.08 0.00 0.00 2.01
1492 1623 2.125310 CACGGAGGCGGCATGTTA 60.125 61.111 13.08 0.00 0.00 2.41
1498 1629 2.973180 GATAGAACCACGGAGGCGGC 62.973 65.000 0.00 0.00 43.14 6.53
1499 1630 1.067582 GATAGAACCACGGAGGCGG 59.932 63.158 0.00 0.00 43.14 6.13
1501 1632 0.759346 ATGGATAGAACCACGGAGGC 59.241 55.000 0.00 0.00 43.03 4.70
1502 1633 1.000163 CGATGGATAGAACCACGGAGG 60.000 57.143 0.00 0.00 43.03 4.30
1503 1634 1.681793 ACGATGGATAGAACCACGGAG 59.318 52.381 0.00 0.00 43.03 4.63
1504 1635 1.771565 ACGATGGATAGAACCACGGA 58.228 50.000 0.00 0.00 43.03 4.69
1505 1636 3.720949 TTACGATGGATAGAACCACGG 57.279 47.619 0.00 0.00 43.03 4.94
1507 1638 7.208080 ACTGTAATTACGATGGATAGAACCAC 58.792 38.462 10.92 0.00 43.03 4.16
1509 1640 9.408069 CTAACTGTAATTACGATGGATAGAACC 57.592 37.037 10.92 0.00 0.00 3.62
1510 1641 9.962783 ACTAACTGTAATTACGATGGATAGAAC 57.037 33.333 10.92 0.00 0.00 3.01
1513 2109 9.745880 ACAACTAACTGTAATTACGATGGATAG 57.254 33.333 10.92 10.59 0.00 2.08
1542 2138 3.807622 CGATTTCCTAACACACGGCATAT 59.192 43.478 0.00 0.00 0.00 1.78
1543 2139 3.191669 CGATTTCCTAACACACGGCATA 58.808 45.455 0.00 0.00 0.00 3.14
1548 2144 0.368907 CGGCGATTTCCTAACACACG 59.631 55.000 0.00 0.00 0.00 4.49
1575 2171 2.050269 CACTCCTGTGGACCTCGTT 58.950 57.895 0.00 0.00 40.33 3.85
1608 2204 3.699955 CTGCCGGCGTTCGATCAGA 62.700 63.158 23.90 0.00 42.43 3.27
1632 2228 1.066430 GGCGACCTACATTGGAACTCA 60.066 52.381 0.00 0.00 0.00 3.41
1669 2265 4.455877 GCACACCTTACTAGCATTTGAAGT 59.544 41.667 0.00 0.00 0.00 3.01
1687 2283 4.613031 GCGAAAGTTCATTAAGAAGCACAC 59.387 41.667 0.00 0.00 36.78 3.82
1688 2284 4.610456 CGCGAAAGTTCATTAAGAAGCACA 60.610 41.667 0.00 0.00 36.78 4.57
1689 2285 3.840763 CGCGAAAGTTCATTAAGAAGCAC 59.159 43.478 0.00 0.00 36.78 4.40
1728 2329 5.008619 TGATGCTTGCTGAAGAAACAAAA 57.991 34.783 0.00 0.00 0.00 2.44
1764 2365 1.055040 ATCTCACCTCTATGGCTGCC 58.945 55.000 12.87 12.87 40.22 4.85
1785 2386 6.515832 TGAGTGTAGCATATAATGTCCAGTG 58.484 40.000 0.00 0.00 0.00 3.66
1790 2391 7.517417 GCTGTGTTGAGTGTAGCATATAATGTC 60.517 40.741 0.00 0.00 34.64 3.06
1798 2399 2.810274 CAAGCTGTGTTGAGTGTAGCAT 59.190 45.455 0.00 0.00 36.87 3.79
1800 2401 2.483876 TCAAGCTGTGTTGAGTGTAGC 58.516 47.619 0.00 0.00 32.54 3.58
1803 2404 3.976793 CAATCAAGCTGTGTTGAGTGT 57.023 42.857 5.60 0.00 43.97 3.55
1805 2406 6.000219 AGATTACAATCAAGCTGTGTTGAGT 59.000 36.000 10.96 0.00 39.78 3.41
1806 2407 6.492007 AGATTACAATCAAGCTGTGTTGAG 57.508 37.500 10.96 0.00 39.78 3.02
1807 2408 8.565896 AATAGATTACAATCAAGCTGTGTTGA 57.434 30.769 10.96 0.65 40.68 3.18
1808 2409 9.282247 GAAATAGATTACAATCAAGCTGTGTTG 57.718 33.333 4.85 0.00 37.89 3.33
1809 2410 9.013229 TGAAATAGATTACAATCAAGCTGTGTT 57.987 29.630 4.85 0.00 37.89 3.32
1810 2411 8.565896 TGAAATAGATTACAATCAAGCTGTGT 57.434 30.769 4.85 0.00 37.89 3.72
1811 2412 9.661187 GATGAAATAGATTACAATCAAGCTGTG 57.339 33.333 4.85 0.00 37.89 3.66
1812 2413 9.624373 AGATGAAATAGATTACAATCAAGCTGT 57.376 29.630 4.85 0.00 37.89 4.40
1845 2446 4.277174 TCAAAGCTTCAGCCGATGTAAAAA 59.723 37.500 0.00 0.00 43.38 1.94
1846 2447 3.818210 TCAAAGCTTCAGCCGATGTAAAA 59.182 39.130 0.00 0.00 43.38 1.52
1847 2448 3.407698 TCAAAGCTTCAGCCGATGTAAA 58.592 40.909 0.00 0.00 43.38 2.01
1848 2449 3.052455 TCAAAGCTTCAGCCGATGTAA 57.948 42.857 0.00 0.00 43.38 2.41
1850 2451 1.896220 TTCAAAGCTTCAGCCGATGT 58.104 45.000 0.00 0.00 43.38 3.06
1851 2452 2.995466 TTTCAAAGCTTCAGCCGATG 57.005 45.000 0.00 0.00 43.38 3.84
1852 2453 2.424956 GGATTTCAAAGCTTCAGCCGAT 59.575 45.455 0.00 0.00 43.38 4.18
1908 2509 0.524862 CATTCAGTGCCAAGGTGAGC 59.475 55.000 0.00 0.00 0.00 4.26
1909 2510 2.189594 TCATTCAGTGCCAAGGTGAG 57.810 50.000 0.00 0.00 0.00 3.51
1911 2512 1.135199 GCATCATTCAGTGCCAAGGTG 60.135 52.381 0.00 0.00 35.35 4.00
1935 2536 6.638610 AGAGAGAAAGACCTTGTCATATGTG 58.361 40.000 1.90 0.00 34.60 3.21
1941 2542 6.467677 CCATTTAGAGAGAAAGACCTTGTCA 58.532 40.000 0.00 0.00 34.60 3.58
1952 2553 3.264193 TGCCAGAAGCCATTTAGAGAGAA 59.736 43.478 0.00 0.00 42.71 2.87
1953 2554 2.840038 TGCCAGAAGCCATTTAGAGAGA 59.160 45.455 0.00 0.00 42.71 3.10
1986 2587 6.847364 ACCACCGGTTACTTCCATGTGAAG 62.847 50.000 2.97 17.39 44.44 3.02
1994 2595 3.092301 AGTAGTACCACCGGTTACTTCC 58.908 50.000 21.07 13.44 37.09 3.46
2003 2604 0.606604 AACAGCCAGTAGTACCACCG 59.393 55.000 0.00 0.00 0.00 4.94
2005 2606 4.021719 TCAGTTAACAGCCAGTAGTACCAC 60.022 45.833 8.61 0.00 0.00 4.16
2010 2611 4.589374 AGAGTTCAGTTAACAGCCAGTAGT 59.411 41.667 8.61 0.00 40.83 2.73
2027 2628 1.597742 TGTTGCCTGCAGAAGAGTTC 58.402 50.000 17.39 0.00 0.00 3.01
2150 2751 2.362077 CAAGGCCAAGCAACTTGTTAGT 59.638 45.455 5.01 0.00 39.58 2.24
2164 2765 1.561643 TTGGTCAAACAACAAGGCCA 58.438 45.000 5.01 0.00 0.00 5.36
2443 3052 3.199551 GCAATGGCCGCATCAAGA 58.800 55.556 0.00 0.00 0.00 3.02
2528 3137 1.738365 CGGTCTGGCTGAGTGAATGAG 60.738 57.143 0.00 0.00 0.00 2.90
2538 3147 0.951040 GACAAACTCCGGTCTGGCTG 60.951 60.000 0.00 0.00 37.80 4.85
2539 3148 1.122019 AGACAAACTCCGGTCTGGCT 61.122 55.000 0.00 0.00 42.49 4.75
2553 3162 5.652014 ACACAGAGGAAAAATGAACAGACAA 59.348 36.000 0.00 0.00 0.00 3.18
2567 3176 6.010850 CACTAGGCCTATATACACAGAGGAA 58.989 44.000 14.30 0.00 0.00 3.36
2569 3178 5.184096 CACACTAGGCCTATATACACAGAGG 59.816 48.000 14.30 0.00 0.00 3.69
2572 3181 5.770663 AGTCACACTAGGCCTATATACACAG 59.229 44.000 14.30 2.74 0.00 3.66
2573 3182 5.702266 AGTCACACTAGGCCTATATACACA 58.298 41.667 14.30 0.00 0.00 3.72
2574 3183 7.756395 TTAGTCACACTAGGCCTATATACAC 57.244 40.000 14.30 7.98 31.47 2.90
2575 3184 9.458727 GTATTAGTCACACTAGGCCTATATACA 57.541 37.037 14.30 0.00 31.47 2.29
2576 3185 9.458727 TGTATTAGTCACACTAGGCCTATATAC 57.541 37.037 14.30 7.75 31.47 1.47
2591 3200 7.912056 ATGCATATCACCATGTATTAGTCAC 57.088 36.000 0.00 0.00 28.13 3.67
2603 3213 8.065473 AGACACAATTAAAATGCATATCACCA 57.935 30.769 0.00 0.00 0.00 4.17
2611 3221 8.615878 ACAGTAGTAGACACAATTAAAATGCA 57.384 30.769 0.00 0.00 0.00 3.96
2627 3237 9.431368 GTCGAAGAAACCCCACTACAGTAGTAG 62.431 48.148 13.12 6.05 46.30 2.57
2628 3238 4.460382 CGAAGAAACCCCACTACAGTAGTA 59.540 45.833 13.12 0.00 37.23 1.82
2629 3239 3.257624 CGAAGAAACCCCACTACAGTAGT 59.742 47.826 7.48 7.48 40.28 2.73
2630 3240 3.508793 TCGAAGAAACCCCACTACAGTAG 59.491 47.826 6.00 6.00 0.00 2.57
2631 3241 3.256631 GTCGAAGAAACCCCACTACAGTA 59.743 47.826 0.00 0.00 39.69 2.74
2632 3242 2.036862 GTCGAAGAAACCCCACTACAGT 59.963 50.000 0.00 0.00 39.69 3.55
2633 3243 2.036733 TGTCGAAGAAACCCCACTACAG 59.963 50.000 0.00 0.00 39.69 2.74
2671 3281 4.742201 TCAGGCTCTTGCGCGTCC 62.742 66.667 8.43 0.00 40.82 4.79
2677 3287 0.179051 CCTCTGGATCAGGCTCTTGC 60.179 60.000 0.00 0.00 38.76 4.01
2683 3293 1.124477 CCCTACCCTCTGGATCAGGC 61.124 65.000 0.00 0.00 34.81 4.85
2698 3308 1.817572 TACCCCACTGAGGCACCCTA 61.818 60.000 0.00 0.00 31.76 3.53
2714 3324 2.103042 CCTGCACAGAAGCGCTACC 61.103 63.158 12.05 5.89 37.31 3.18
2716 3326 0.034756 TTTCCTGCACAGAAGCGCTA 59.965 50.000 12.05 0.00 37.31 4.26
2718 3328 0.455633 CATTTCCTGCACAGAAGCGC 60.456 55.000 0.00 0.00 37.31 5.92
2728 3338 3.569701 TGAACTTGTCCTTCATTTCCTGC 59.430 43.478 0.00 0.00 0.00 4.85
2749 3359 4.907034 CCGAGACCGACGGCGATG 62.907 72.222 15.16 0.00 43.74 3.84
2790 3400 9.983804 GTGGTATATAGCAAAAACAGAAGTTAC 57.016 33.333 15.90 0.00 34.39 2.50
2806 3428 9.760077 ACGGACTTATCAAAAAGTGGTATATAG 57.240 33.333 0.00 0.00 39.78 1.31
2811 3433 8.674263 TTTTACGGACTTATCAAAAAGTGGTA 57.326 30.769 0.00 0.00 39.78 3.25
2813 3435 7.114388 GCTTTTTACGGACTTATCAAAAAGTGG 59.886 37.037 15.34 0.00 43.30 4.00
2822 3444 6.663944 ATCACAGCTTTTTACGGACTTATC 57.336 37.500 0.00 0.00 0.00 1.75
2823 3445 7.174253 TGAAATCACAGCTTTTTACGGACTTAT 59.826 33.333 0.00 0.00 0.00 1.73
2824 3446 6.483974 TGAAATCACAGCTTTTTACGGACTTA 59.516 34.615 0.00 0.00 0.00 2.24
2825 3447 5.298276 TGAAATCACAGCTTTTTACGGACTT 59.702 36.000 0.00 0.00 0.00 3.01
2826 3448 4.819630 TGAAATCACAGCTTTTTACGGACT 59.180 37.500 0.00 0.00 0.00 3.85
2828 3450 4.819630 ACTGAAATCACAGCTTTTTACGGA 59.180 37.500 0.00 0.00 41.06 4.69
2829 3451 5.049405 AGACTGAAATCACAGCTTTTTACGG 60.049 40.000 0.00 0.00 41.06 4.02
2831 3453 7.803659 GGTTAGACTGAAATCACAGCTTTTTAC 59.196 37.037 0.00 0.00 41.06 2.01
2832 3454 7.500892 TGGTTAGACTGAAATCACAGCTTTTTA 59.499 33.333 0.00 0.00 41.06 1.52
2833 3455 6.321181 TGGTTAGACTGAAATCACAGCTTTTT 59.679 34.615 0.00 0.00 41.06 1.94
2861 3483 2.941720 CCTGCAGTAGAATTCTCTTGGC 59.058 50.000 12.24 12.08 32.70 4.52
2865 3487 3.604582 GCAACCTGCAGTAGAATTCTCT 58.395 45.455 12.24 6.43 44.26 3.10
2968 3590 0.243907 GACTGCGCTGGTACTTCTCA 59.756 55.000 18.98 0.00 0.00 3.27
3004 3626 8.627403 CATTAAATCCTTACCTCGTAGTCAGTA 58.373 37.037 0.00 0.00 0.00 2.74
3007 3629 6.608405 TCCATTAAATCCTTACCTCGTAGTCA 59.392 38.462 0.00 0.00 0.00 3.41
3044 3667 0.816825 CTGTAGCATTGGCATCGGCT 60.817 55.000 11.84 11.84 44.61 5.52
3048 3671 1.672881 GTGTCCTGTAGCATTGGCATC 59.327 52.381 0.00 0.00 44.61 3.91
3059 3682 9.764363 GATTTCAGAACATATATGTGTCCTGTA 57.236 33.333 25.83 19.93 41.61 2.74
3060 3683 7.716998 GGATTTCAGAACATATATGTGTCCTGT 59.283 37.037 25.83 16.21 41.61 4.00
3088 3711 2.812011 TCAGAAGCCGAGGTTAAAAAGC 59.188 45.455 0.00 0.00 0.00 3.51
3089 3712 5.048713 ACATTCAGAAGCCGAGGTTAAAAAG 60.049 40.000 0.00 0.00 0.00 2.27
3097 3727 6.045318 CCATATATACATTCAGAAGCCGAGG 58.955 44.000 0.00 0.00 0.00 4.63
3101 3731 5.587844 CCTGCCATATATACATTCAGAAGCC 59.412 44.000 0.00 0.00 0.00 4.35
3127 3759 1.814527 GACCGCGGTTATCAGGTCT 59.185 57.895 34.65 4.34 46.99 3.85
3274 3906 7.720957 CCCATATCAAACTCATTCTCCATACAA 59.279 37.037 0.00 0.00 0.00 2.41
3415 4050 1.290324 CCTACCGATGGATCTGCCG 59.710 63.158 0.00 0.00 40.66 5.69
3462 4097 4.401519 TGAACCTAGGTAAATCTGGTCTCG 59.598 45.833 16.67 0.00 0.00 4.04
3559 4194 6.267070 GCAGTATCTTATATAAGCCGAGACC 58.733 44.000 16.37 2.11 33.40 3.85
3580 4215 2.203209 GTAATCCAGGGGCCGCAG 60.203 66.667 23.39 14.44 0.00 5.18
3593 4228 2.790433 AGCCGACCATGTTTGTGTAAT 58.210 42.857 0.00 0.00 0.00 1.89
3596 4231 2.083774 CATAGCCGACCATGTTTGTGT 58.916 47.619 0.00 0.00 0.00 3.72
3634 4271 1.379443 TCCACCGACATAGCCGACT 60.379 57.895 0.00 0.00 0.00 4.18
3671 4308 2.551459 CTGTTCAAGACAAGGAAGCTGG 59.449 50.000 0.00 0.00 37.93 4.85
3751 4388 0.914902 GCCCCCTAGGTCAGTTTCCT 60.915 60.000 8.29 0.00 38.26 3.36
3839 4483 1.528129 CCAAGCTTGAGGACCAGTTC 58.472 55.000 28.05 0.00 0.00 3.01
3887 4531 0.452184 CTCGGCAAGCGAGAAGACTA 59.548 55.000 5.05 0.00 35.69 2.59
3889 4533 1.807573 CCTCGGCAAGCGAGAAGAC 60.808 63.158 11.78 0.00 35.69 3.01
3891 4535 1.374758 AACCTCGGCAAGCGAGAAG 60.375 57.895 11.78 0.12 35.69 2.85
3893 4537 2.048222 CAACCTCGGCAAGCGAGA 60.048 61.111 11.78 2.97 35.69 4.04
3894 4538 1.630244 CTTCAACCTCGGCAAGCGAG 61.630 60.000 4.12 4.12 0.00 5.03
3951 4598 1.524863 CCGGCTATAGGAGGTCGGTG 61.525 65.000 1.04 0.00 33.63 4.94
3952 4599 1.228490 CCGGCTATAGGAGGTCGGT 60.228 63.158 1.04 0.00 33.63 4.69
4023 4670 4.756642 TCCAGCTATCTTAATCGGCAATTG 59.243 41.667 0.00 0.00 0.00 2.32
4038 4685 1.568504 TTTCCACGGAGTCCAGCTAT 58.431 50.000 10.49 0.00 41.61 2.97
4109 4756 1.741770 GGCCACTGGACGTCATCAC 60.742 63.158 18.91 0.00 0.00 3.06
4130 4777 3.820467 TCGTCGAACAAACCTACTCCTTA 59.180 43.478 0.00 0.00 0.00 2.69
4194 4841 0.822164 GGGCTACGAGGCAGAAGTTA 59.178 55.000 9.84 0.00 43.44 2.24
4215 4862 0.534203 TTGAAACCGGTCTGTGGCTC 60.534 55.000 8.04 0.00 0.00 4.70
4216 4863 0.110486 ATTGAAACCGGTCTGTGGCT 59.890 50.000 8.04 0.00 0.00 4.75
4217 4864 2.641197 ATTGAAACCGGTCTGTGGC 58.359 52.632 8.04 0.00 0.00 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.