Multiple sequence alignment - TraesCS2B01G457300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G457300 chr2B 100.000 4618 0 0 1 4618 651928941 651933558 0.000000e+00 8528
1 TraesCS2B01G457300 chr2B 89.189 148 15 1 1 148 543015861 543016007 2.840000e-42 183
2 TraesCS2B01G457300 chr2B 95.062 81 4 0 665 745 278905816 278905736 1.350000e-25 128
3 TraesCS2B01G457300 chr2A 89.317 1844 122 43 2377 4211 688234376 688232599 0.000000e+00 2244
4 TraesCS2B01G457300 chr2A 93.135 874 59 1 1505 2378 688235294 688234422 0.000000e+00 1280
5 TraesCS2B01G457300 chr2A 91.045 670 36 14 857 1503 688236025 688235357 0.000000e+00 883
6 TraesCS2B01G457300 chr2A 92.388 289 18 3 4334 4618 688232460 688232172 4.300000e-110 409
7 TraesCS2B01G457300 chr2A 89.231 195 20 1 143 336 688236682 688236488 4.620000e-60 243
8 TraesCS2B01G457300 chr2A 79.228 337 34 15 330 663 688236449 688236146 7.830000e-48 202
9 TraesCS2B01G457300 chr2D 88.882 1556 106 33 854 2378 545037453 545038972 0.000000e+00 1853
10 TraesCS2B01G457300 chr2D 92.940 1034 62 8 3148 4173 545039764 545040794 0.000000e+00 1495
11 TraesCS2B01G457300 chr2D 91.076 762 48 12 2376 3125 545039018 545039771 0.000000e+00 1013
12 TraesCS2B01G457300 chr2D 86.916 535 39 8 143 663 545036568 545037085 5.180000e-159 571
13 TraesCS2B01G457300 chr2D 98.718 78 1 0 4541 4618 545041568 545041645 6.230000e-29 139
14 TraesCS2B01G457300 chr4B 92.361 144 11 0 1 144 402859594 402859451 6.060000e-49 206
15 TraesCS2B01G457300 chr4B 92.361 144 11 0 1 144 402869688 402869545 6.060000e-49 206
16 TraesCS2B01G457300 chr3B 90.541 148 13 1 1 148 132250938 132250792 1.310000e-45 195
17 TraesCS2B01G457300 chr3B 100.000 78 0 0 665 742 11694451 11694528 1.340000e-30 145
18 TraesCS2B01G457300 chr7B 89.865 148 14 1 1 148 157164940 157165086 6.100000e-44 189
19 TraesCS2B01G457300 chr7B 89.865 148 13 2 1 148 461743312 461743167 6.100000e-44 189
20 TraesCS2B01G457300 chr7B 89.726 146 15 0 1 146 655216989 655216844 2.190000e-43 187
21 TraesCS2B01G457300 chr7B 89.189 148 14 2 1 148 634367193 634367338 2.840000e-42 183
22 TraesCS2B01G457300 chr7B 100.000 78 0 0 663 740 234912841 234912918 1.340000e-30 145
23 TraesCS2B01G457300 chr7B 96.471 85 3 0 661 745 750579102 750579018 1.730000e-29 141
24 TraesCS2B01G457300 chr1B 88.387 155 16 2 1 153 297121760 297121606 7.890000e-43 185
25 TraesCS2B01G457300 chr1A 100.000 79 0 0 664 742 104918855 104918933 3.720000e-31 147
26 TraesCS2B01G457300 chr4D 96.250 80 3 0 663 742 447293814 447293735 1.040000e-26 132
27 TraesCS2B01G457300 chrUn 96.154 78 3 0 665 742 15884406 15884483 1.350000e-25 128
28 TraesCS2B01G457300 chrUn 93.902 82 5 0 661 742 64153169 64153250 1.740000e-24 124
29 TraesCS2B01G457300 chr3D 96.154 78 3 0 665 742 529127161 529127238 1.350000e-25 128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G457300 chr2B 651928941 651933558 4617 False 8528.000000 8528 100.000000 1 4618 1 chr2B.!!$F2 4617
1 TraesCS2B01G457300 chr2A 688232172 688236682 4510 True 876.833333 2244 89.057333 143 4618 6 chr2A.!!$R1 4475
2 TraesCS2B01G457300 chr2D 545036568 545041645 5077 False 1014.200000 1853 91.706400 143 4618 5 chr2D.!!$F1 4475

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
677 766 0.824759 ATACTTGAGGACAGGGCGTC 59.175 55.0 0.00 0.00 44.57 5.19 F
1638 2074 0.535102 ACAAAGGTCAGGTTCAGCCG 60.535 55.0 0.00 0.00 43.70 5.52 F
3314 3823 0.523072 TCGATTTCTGCCTGCAAAGC 59.477 50.0 1.42 1.42 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2532 3026 0.323178 CAGCAAGTTCAGGCCTCCAT 60.323 55.0 0.0 0.0 0.00 3.41 R
3506 4015 0.105142 ACCACTGGTAGTCACCCACT 60.105 55.0 0.0 0.0 45.11 4.00 R
4297 4926 0.179089 CTTCAGAGCGACATGGGAGG 60.179 60.0 0.0 0.0 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.573166 AATGATATCCCTCAATTCGTATTTGAA 57.427 29.630 0.00 0.00 32.98 2.69
27 28 8.378172 TGATATCCCTCAATTCGTATTTGAAC 57.622 34.615 0.00 0.00 32.98 3.18
28 29 7.990314 TGATATCCCTCAATTCGTATTTGAACA 59.010 33.333 0.00 0.00 32.98 3.18
29 30 8.924511 ATATCCCTCAATTCGTATTTGAACAT 57.075 30.769 0.00 0.00 32.98 2.71
31 32 7.786178 TCCCTCAATTCGTATTTGAACATAG 57.214 36.000 0.00 0.00 32.98 2.23
32 33 7.335627 TCCCTCAATTCGTATTTGAACATAGT 58.664 34.615 0.00 0.00 32.98 2.12
33 34 7.827236 TCCCTCAATTCGTATTTGAACATAGTT 59.173 33.333 0.00 0.00 32.98 2.24
34 35 8.458843 CCCTCAATTCGTATTTGAACATAGTTT 58.541 33.333 0.00 0.00 32.98 2.66
35 36 9.840427 CCTCAATTCGTATTTGAACATAGTTTT 57.160 29.630 0.00 0.00 32.98 2.43
41 42 9.483916 TTCGTATTTGAACATAGTTTTGAGAGA 57.516 29.630 0.00 0.00 0.00 3.10
42 43 9.653287 TCGTATTTGAACATAGTTTTGAGAGAT 57.347 29.630 0.00 0.00 0.00 2.75
82 83 9.900710 ACATGCATTAACATTTCGTTAGTTAAA 57.099 25.926 0.00 0.00 41.10 1.52
119 120 9.884636 AAATTTTGCATAAAATACTAAGGGGAC 57.115 29.630 0.00 0.00 43.74 4.46
120 121 8.838649 ATTTTGCATAAAATACTAAGGGGACT 57.161 30.769 0.00 0.00 42.96 3.85
121 122 9.930158 ATTTTGCATAAAATACTAAGGGGACTA 57.070 29.630 0.00 0.00 42.96 2.59
122 123 9.756571 TTTTGCATAAAATACTAAGGGGACTAA 57.243 29.630 0.00 0.00 32.83 2.24
123 124 9.930158 TTTGCATAAAATACTAAGGGGACTAAT 57.070 29.630 0.00 0.00 42.68 1.73
130 131 9.916360 AAAATACTAAGGGGACTAATAAACCAG 57.084 33.333 0.00 0.00 42.68 4.00
131 132 5.970501 ACTAAGGGGACTAATAAACCAGG 57.029 43.478 0.00 0.00 42.68 4.45
132 133 5.606761 ACTAAGGGGACTAATAAACCAGGA 58.393 41.667 0.00 0.00 42.68 3.86
133 134 4.857130 AAGGGGACTAATAAACCAGGAC 57.143 45.455 0.00 0.00 42.68 3.85
134 135 2.770232 AGGGGACTAATAAACCAGGACG 59.230 50.000 0.00 0.00 40.61 4.79
135 136 2.767960 GGGGACTAATAAACCAGGACGA 59.232 50.000 0.00 0.00 0.00 4.20
136 137 3.198417 GGGGACTAATAAACCAGGACGAA 59.802 47.826 0.00 0.00 0.00 3.85
137 138 4.439968 GGGACTAATAAACCAGGACGAAG 58.560 47.826 0.00 0.00 0.00 3.79
138 139 4.439968 GGACTAATAAACCAGGACGAAGG 58.560 47.826 0.00 0.00 0.00 3.46
139 140 4.081254 GGACTAATAAACCAGGACGAAGGT 60.081 45.833 0.00 0.00 40.61 3.50
140 141 5.127682 GGACTAATAAACCAGGACGAAGGTA 59.872 44.000 0.00 0.00 37.07 3.08
141 142 6.218108 ACTAATAAACCAGGACGAAGGTAG 57.782 41.667 0.00 0.00 37.07 3.18
202 204 7.806690 TGAATTTCAAACGAAGATAGTTCAGG 58.193 34.615 0.00 0.00 0.00 3.86
210 212 2.868964 AGATAGTTCAGGTAGGGCCA 57.131 50.000 6.18 0.00 40.61 5.36
220 222 0.919710 GGTAGGGCCACCTCTTGATT 59.080 55.000 6.18 0.00 46.95 2.57
261 263 8.748380 ATGTAATCTTTTAAGAAACTTGCTGC 57.252 30.769 0.00 0.00 38.77 5.25
267 269 6.318648 TCTTTTAAGAAACTTGCTGCTGAGAA 59.681 34.615 0.00 0.00 30.73 2.87
277 279 1.537202 GCTGCTGAGAACCGTTCAATT 59.463 47.619 13.69 0.00 0.00 2.32
279 281 1.879380 TGCTGAGAACCGTTCAATTGG 59.121 47.619 13.69 0.00 0.00 3.16
301 303 4.094442 GGATCGTGGTTGTCAAATTCCTAC 59.906 45.833 0.00 0.00 0.00 3.18
384 444 4.739716 TGAAAGAAAGCAAACGAATCAAGC 59.260 37.500 0.00 0.00 0.00 4.01
385 445 3.988379 AGAAAGCAAACGAATCAAGCA 57.012 38.095 0.00 0.00 0.00 3.91
389 449 1.542915 AGCAAACGAATCAAGCAGCAT 59.457 42.857 0.00 0.00 0.00 3.79
394 454 1.089112 CGAATCAAGCAGCATGTCCA 58.911 50.000 0.00 0.00 39.31 4.02
398 458 2.203470 TCAAGCAGCATGTCCATTCA 57.797 45.000 0.00 0.00 39.31 2.57
459 519 6.506500 CAAATGAATTGTAGCAAGAGGTCT 57.493 37.500 0.00 0.00 34.16 3.85
460 520 6.320171 CAAATGAATTGTAGCAAGAGGTCTG 58.680 40.000 0.00 0.00 34.16 3.51
461 521 4.890158 TGAATTGTAGCAAGAGGTCTGA 57.110 40.909 0.00 0.00 0.00 3.27
462 522 4.825422 TGAATTGTAGCAAGAGGTCTGAG 58.175 43.478 0.00 0.00 0.00 3.35
463 523 4.284490 TGAATTGTAGCAAGAGGTCTGAGT 59.716 41.667 0.00 0.00 0.00 3.41
464 524 3.667497 TTGTAGCAAGAGGTCTGAGTG 57.333 47.619 0.00 0.00 0.00 3.51
465 525 1.273606 TGTAGCAAGAGGTCTGAGTGC 59.726 52.381 0.00 0.00 35.41 4.40
466 526 1.273606 GTAGCAAGAGGTCTGAGTGCA 59.726 52.381 5.23 0.00 37.68 4.57
467 527 0.982704 AGCAAGAGGTCTGAGTGCAT 59.017 50.000 5.23 0.00 37.68 3.96
468 528 1.085091 GCAAGAGGTCTGAGTGCATG 58.915 55.000 0.00 0.00 35.28 4.06
469 529 1.610102 GCAAGAGGTCTGAGTGCATGT 60.610 52.381 0.00 0.00 35.28 3.21
470 530 2.354103 GCAAGAGGTCTGAGTGCATGTA 60.354 50.000 0.00 0.00 35.28 2.29
471 531 3.866066 GCAAGAGGTCTGAGTGCATGTAA 60.866 47.826 0.00 0.00 35.28 2.41
472 532 4.511527 CAAGAGGTCTGAGTGCATGTAAT 58.488 43.478 0.00 0.00 0.00 1.89
473 533 4.833478 AGAGGTCTGAGTGCATGTAATT 57.167 40.909 0.00 0.00 0.00 1.40
474 534 5.171339 AGAGGTCTGAGTGCATGTAATTT 57.829 39.130 0.00 0.00 0.00 1.82
475 535 5.564550 AGAGGTCTGAGTGCATGTAATTTT 58.435 37.500 0.00 0.00 0.00 1.82
476 536 6.006449 AGAGGTCTGAGTGCATGTAATTTTT 58.994 36.000 0.00 0.00 0.00 1.94
477 537 6.150140 AGAGGTCTGAGTGCATGTAATTTTTC 59.850 38.462 0.00 0.00 0.00 2.29
478 538 5.183904 AGGTCTGAGTGCATGTAATTTTTCC 59.816 40.000 0.00 0.00 0.00 3.13
479 539 5.183904 GGTCTGAGTGCATGTAATTTTTCCT 59.816 40.000 0.00 0.00 0.00 3.36
480 540 6.317857 GTCTGAGTGCATGTAATTTTTCCTC 58.682 40.000 0.00 0.00 0.00 3.71
481 541 6.150140 GTCTGAGTGCATGTAATTTTTCCTCT 59.850 38.462 0.00 0.00 0.00 3.69
561 649 1.252779 CAATCAGACGACGTATGTGCG 59.747 52.381 20.86 7.79 37.94 5.34
604 693 7.201947 GGATCAAAATCCCCCAAAGAATCTTAG 60.202 40.741 0.00 0.00 45.11 2.18
624 713 7.433680 TCTTAGAAAATTCCTTGGAAGCAAAC 58.566 34.615 8.16 0.00 0.00 2.93
637 726 3.056821 GGAAGCAAACGAGCCCTTATTTT 60.057 43.478 0.00 0.00 34.23 1.82
650 739 7.114953 CGAGCCCTTATTTTCTTTCTTTTTGAC 59.885 37.037 0.00 0.00 0.00 3.18
673 762 5.941555 AAGTCTAATACTTGAGGACAGGG 57.058 43.478 0.00 0.00 46.90 4.45
674 763 3.707102 AGTCTAATACTTGAGGACAGGGC 59.293 47.826 0.00 0.00 33.35 5.19
675 764 2.693591 TCTAATACTTGAGGACAGGGCG 59.306 50.000 0.00 0.00 0.00 6.13
676 765 1.276622 AATACTTGAGGACAGGGCGT 58.723 50.000 0.00 0.00 0.00 5.68
677 766 0.824759 ATACTTGAGGACAGGGCGTC 59.175 55.000 0.00 0.00 44.57 5.19
678 767 1.592400 TACTTGAGGACAGGGCGTCG 61.592 60.000 0.00 0.00 46.42 5.12
679 768 2.599281 TTGAGGACAGGGCGTCGA 60.599 61.111 0.00 0.00 46.42 4.20
680 769 2.820767 CTTGAGGACAGGGCGTCGAC 62.821 65.000 5.18 5.18 46.42 4.20
681 770 4.131088 GAGGACAGGGCGTCGACC 62.131 72.222 9.89 9.89 46.42 4.79
682 771 4.680537 AGGACAGGGCGTCGACCT 62.681 66.667 15.92 15.92 45.50 3.85
687 776 4.003788 AGGGCGTCGACCTGTTGG 62.004 66.667 21.81 0.00 41.17 3.77
689 778 4.681978 GGCGTCGACCTGTTGGCT 62.682 66.667 10.58 0.00 36.63 4.75
690 779 3.414700 GCGTCGACCTGTTGGCTG 61.415 66.667 10.58 0.00 36.63 4.85
691 780 2.738521 CGTCGACCTGTTGGCTGG 60.739 66.667 10.58 0.00 39.33 4.85
692 781 2.358737 GTCGACCTGTTGGCTGGG 60.359 66.667 3.51 0.00 37.95 4.45
693 782 4.329545 TCGACCTGTTGGCTGGGC 62.330 66.667 0.00 0.00 38.27 5.36
694 783 4.641645 CGACCTGTTGGCTGGGCA 62.642 66.667 0.00 0.00 41.36 5.36
695 784 2.674380 GACCTGTTGGCTGGGCAG 60.674 66.667 0.00 0.00 41.00 4.85
705 794 3.060615 CTGGGCAGCTGAGGTTGC 61.061 66.667 20.43 0.23 46.58 4.17
706 795 3.564345 CTGGGCAGCTGAGGTTGCT 62.564 63.158 20.43 0.00 46.51 3.91
711 800 2.033757 AGCTGAGGTTGCTGCCAG 59.966 61.111 0.00 0.00 39.56 4.85
712 801 3.745803 GCTGAGGTTGCTGCCAGC 61.746 66.667 10.45 10.45 44.00 4.85
713 802 3.060615 CTGAGGTTGCTGCCAGCC 61.061 66.667 15.29 0.00 41.51 4.85
714 803 4.666253 TGAGGTTGCTGCCAGCCC 62.666 66.667 15.29 9.16 42.79 5.19
715 804 4.666253 GAGGTTGCTGCCAGCCCA 62.666 66.667 15.29 0.00 42.79 5.36
716 805 4.982701 AGGTTGCTGCCAGCCCAC 62.983 66.667 15.29 10.81 42.79 4.61
722 811 4.290622 CTGCCAGCCCACCCAAGT 62.291 66.667 0.00 0.00 0.00 3.16
723 812 3.815407 CTGCCAGCCCACCCAAGTT 62.815 63.158 0.00 0.00 0.00 2.66
724 813 2.991540 GCCAGCCCACCCAAGTTC 60.992 66.667 0.00 0.00 0.00 3.01
725 814 2.672996 CCAGCCCACCCAAGTTCG 60.673 66.667 0.00 0.00 0.00 3.95
726 815 2.429930 CAGCCCACCCAAGTTCGA 59.570 61.111 0.00 0.00 0.00 3.71
727 816 1.672356 CAGCCCACCCAAGTTCGAG 60.672 63.158 0.00 0.00 0.00 4.04
728 817 2.147387 AGCCCACCCAAGTTCGAGT 61.147 57.895 0.00 0.00 0.00 4.18
729 818 1.671379 GCCCACCCAAGTTCGAGTC 60.671 63.158 0.00 0.00 0.00 3.36
730 819 1.003718 CCCACCCAAGTTCGAGTCC 60.004 63.158 0.00 0.00 0.00 3.85
731 820 1.003718 CCACCCAAGTTCGAGTCCC 60.004 63.158 0.00 0.00 0.00 4.46
732 821 1.374252 CACCCAAGTTCGAGTCCCG 60.374 63.158 0.00 0.00 40.25 5.14
733 822 2.264794 CCCAAGTTCGAGTCCCGG 59.735 66.667 0.00 0.00 39.14 5.73
734 823 2.434359 CCAAGTTCGAGTCCCGGC 60.434 66.667 0.00 0.00 39.14 6.13
735 824 2.342279 CAAGTTCGAGTCCCGGCA 59.658 61.111 0.00 0.00 39.14 5.69
736 825 2.027625 CAAGTTCGAGTCCCGGCAC 61.028 63.158 0.00 0.00 39.14 5.01
781 1090 7.361438 TCTCTCTCTCTCCTAATTTCTCCATT 58.639 38.462 0.00 0.00 0.00 3.16
827 1137 8.408043 TTTCTCCATTCTTTCTTGCTCATTTA 57.592 30.769 0.00 0.00 0.00 1.40
934 1284 1.429463 CTTGACACGTTCCAGTAGGC 58.571 55.000 0.00 0.00 33.74 3.93
1049 1399 3.411517 CCACCCTCGCCTCCCATT 61.412 66.667 0.00 0.00 0.00 3.16
1054 1404 2.507944 CTCGCCTCCCATTCCCAG 59.492 66.667 0.00 0.00 0.00 4.45
1107 1472 3.612247 CTCCCTCCACCACCGCAAG 62.612 68.421 0.00 0.00 0.00 4.01
1434 1808 2.768344 GGATCCTTCCCTCCCGCA 60.768 66.667 3.84 0.00 35.84 5.69
1460 1834 3.471806 GGTCCGCTCCTTCTCCCC 61.472 72.222 0.00 0.00 0.00 4.81
1461 1835 2.364448 GTCCGCTCCTTCTCCCCT 60.364 66.667 0.00 0.00 0.00 4.79
1462 1836 1.990614 GTCCGCTCCTTCTCCCCTT 60.991 63.158 0.00 0.00 0.00 3.95
1463 1837 0.686769 GTCCGCTCCTTCTCCCCTTA 60.687 60.000 0.00 0.00 0.00 2.69
1471 1846 2.505819 TCCTTCTCCCCTTATGCACTTC 59.494 50.000 0.00 0.00 0.00 3.01
1505 1880 7.041721 TGCTTTGACTACTGAACGATTATGAT 58.958 34.615 0.00 0.00 0.00 2.45
1510 1885 8.196802 TGACTACTGAACGATTATGATTTTGG 57.803 34.615 0.00 0.00 0.00 3.28
1549 1985 1.856265 CGTTGAAGCACAGGGGAAGC 61.856 60.000 0.00 0.00 0.00 3.86
1557 1993 2.437359 CAGGGGAAGCGGCTCAAG 60.437 66.667 1.45 0.00 0.00 3.02
1590 2026 2.259439 CCGCCCTAGTATCGACGCT 61.259 63.158 0.00 0.00 0.00 5.07
1599 2035 2.215196 AGTATCGACGCTCTCTTCTCC 58.785 52.381 0.00 0.00 0.00 3.71
1614 2050 3.498397 TCTTCTCCGAGTTGTCAAAATGC 59.502 43.478 0.00 0.00 0.00 3.56
1638 2074 0.535102 ACAAAGGTCAGGTTCAGCCG 60.535 55.000 0.00 0.00 43.70 5.52
1647 2083 2.761195 GGTTCAGCCGAAATCCGCC 61.761 63.158 0.00 0.00 36.84 6.13
1665 2101 1.434622 CCATGGCAGCTGATGTCGTC 61.435 60.000 20.43 0.00 35.76 4.20
1668 2104 1.216444 GGCAGCTGATGTCGTCTCA 59.784 57.895 20.43 0.00 0.00 3.27
1680 2116 0.902531 TCGTCTCAATTGGGGACTCC 59.097 55.000 21.16 0.00 0.00 3.85
1750 2186 4.342862 GCTGAAGAGCAGGATTGGTATA 57.657 45.455 0.00 0.00 45.46 1.47
1776 2212 3.451178 GCCTAAGTGACAGATGGAAGGTA 59.549 47.826 0.00 0.00 0.00 3.08
1782 2218 5.983540 AGTGACAGATGGAAGGTAAGAATC 58.016 41.667 0.00 0.00 0.00 2.52
1794 2231 5.470047 AGGTAAGAATCGACAGTTGAAGT 57.530 39.130 0.00 0.00 0.00 3.01
1795 2232 5.230942 AGGTAAGAATCGACAGTTGAAGTG 58.769 41.667 0.00 0.00 0.00 3.16
1824 2261 7.589958 TCCTCTCTTACCAATTCTGATAGTC 57.410 40.000 0.00 0.00 0.00 2.59
1833 2270 3.895232 ATTCTGATAGTCGCACTGGTT 57.105 42.857 0.00 0.00 0.00 3.67
1899 2336 2.935238 GCGGATGGCTGAAGAAGTGTTA 60.935 50.000 0.00 0.00 39.11 2.41
1992 2429 6.037610 GGTTTCTAGCACAATCTCCATAACTG 59.962 42.308 0.00 0.00 0.00 3.16
2010 2447 5.456921 AACTGGAATAACATCTCCCATGT 57.543 39.130 0.00 0.00 0.00 3.21
2047 2484 5.532406 TCAGTCAAACTCATTTTCTTCCAGG 59.468 40.000 0.00 0.00 0.00 4.45
2121 2567 5.624159 AGTCAATTCAAGTGAAGATGTCCA 58.376 37.500 0.00 0.00 37.48 4.02
2180 2626 2.886523 TCATTTGTGCAGGAACCAGAAG 59.113 45.455 0.00 0.00 0.00 2.85
2298 2744 6.969993 ACTTGAAGCCAATACAGGTAAAAA 57.030 33.333 0.00 0.00 0.00 1.94
2326 2772 5.247862 TCTTCAGAGAACATGCAGCATTAA 58.752 37.500 4.69 0.00 0.00 1.40
2343 2789 5.207768 GCATTAAGCCGAAGATACAATGTG 58.792 41.667 0.00 0.00 37.23 3.21
2396 2890 4.938226 GGCTTTTGCTAGTACTGATTGAGT 59.062 41.667 5.39 0.00 46.54 3.41
2412 2906 8.507249 ACTGATTGAGTTTGACTATTTTGCTAC 58.493 33.333 0.00 0.00 0.00 3.58
2501 2995 7.553334 ACATCAACGTGGTAACTACTCATATT 58.447 34.615 0.00 0.00 37.61 1.28
2508 3002 8.133627 ACGTGGTAACTACTCATATTGATGTAC 58.866 37.037 0.00 0.00 33.77 2.90
2509 3003 7.594015 CGTGGTAACTACTCATATTGATGTACC 59.406 40.741 0.00 0.00 33.77 3.34
2532 3026 5.310594 CCATCTGTAGGATTGGGAGGATTTA 59.689 44.000 0.00 0.00 31.27 1.40
2628 3122 5.764686 GCAGTTGGGATCATCATATAACACA 59.235 40.000 0.00 0.00 0.00 3.72
2675 3169 2.570302 GTGGTAGGGAAGCAGTCCTAAA 59.430 50.000 6.43 0.00 46.92 1.85
2749 3248 8.489489 TCTCTATGTTTCTTGCTTTCCATCTAT 58.511 33.333 0.00 0.00 0.00 1.98
2750 3249 8.668510 TCTATGTTTCTTGCTTTCCATCTATC 57.331 34.615 0.00 0.00 0.00 2.08
2792 3291 8.306761 AGTGAAGTGATGGTCCAAAATAATTTC 58.693 33.333 0.00 0.00 0.00 2.17
2796 3295 5.288472 GTGATGGTCCAAAATAATTTCGTGC 59.712 40.000 0.00 0.00 0.00 5.34
2801 3300 6.708054 TGGTCCAAAATAATTTCGTGCAAAAT 59.292 30.769 0.00 0.00 0.00 1.82
2802 3301 7.014702 GGTCCAAAATAATTTCGTGCAAAATG 58.985 34.615 0.00 0.00 0.00 2.32
2818 3317 4.450757 GCAAAATGCAAAACGACCCTTTAT 59.549 37.500 0.00 0.00 44.26 1.40
2819 3318 5.635700 GCAAAATGCAAAACGACCCTTTATA 59.364 36.000 0.00 0.00 44.26 0.98
2820 3319 6.183360 GCAAAATGCAAAACGACCCTTTATAG 60.183 38.462 0.00 0.00 44.26 1.31
2821 3320 5.576447 AATGCAAAACGACCCTTTATAGG 57.424 39.130 0.00 0.00 41.60 2.57
2853 3359 5.689819 ACAAAGTCTTGAATTACGATGTGC 58.310 37.500 0.00 0.00 36.33 4.57
3053 3559 4.566488 CCTCTGGGCTGATTTATGGGTATC 60.566 50.000 0.00 0.00 0.00 2.24
3090 3598 7.560991 TCCCATGCTTAATTTCATTACTGTGAT 59.439 33.333 0.00 0.00 0.00 3.06
3104 3613 4.305539 ACTGTGATTGTCAATCCATGGA 57.694 40.909 18.88 18.88 37.09 3.41
3109 3618 7.135591 TGTGATTGTCAATCCATGGAGTATA 57.864 36.000 21.33 6.45 37.09 1.47
3125 3634 4.630069 GGAGTATATCGCTGTTGTTGTTGT 59.370 41.667 0.00 0.00 0.00 3.32
3126 3635 5.121768 GGAGTATATCGCTGTTGTTGTTGTT 59.878 40.000 0.00 0.00 0.00 2.83
3127 3636 5.927030 AGTATATCGCTGTTGTTGTTGTTG 58.073 37.500 0.00 0.00 0.00 3.33
3128 3637 4.829064 ATATCGCTGTTGTTGTTGTTGT 57.171 36.364 0.00 0.00 0.00 3.32
3129 3638 2.999507 TCGCTGTTGTTGTTGTTGTT 57.000 40.000 0.00 0.00 0.00 2.83
3130 3639 2.590073 TCGCTGTTGTTGTTGTTGTTG 58.410 42.857 0.00 0.00 0.00 3.33
3131 3640 2.030717 TCGCTGTTGTTGTTGTTGTTGT 60.031 40.909 0.00 0.00 0.00 3.32
3132 3641 2.728839 CGCTGTTGTTGTTGTTGTTGTT 59.271 40.909 0.00 0.00 0.00 2.83
3133 3642 3.421569 CGCTGTTGTTGTTGTTGTTGTTG 60.422 43.478 0.00 0.00 0.00 3.33
3134 3643 3.492756 GCTGTTGTTGTTGTTGTTGTTGT 59.507 39.130 0.00 0.00 0.00 3.32
3135 3644 4.025313 GCTGTTGTTGTTGTTGTTGTTGTT 60.025 37.500 0.00 0.00 0.00 2.83
3136 3645 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
3137 3646 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
3138 3647 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
3139 3648 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
3140 3649 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
3141 3650 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
3142 3651 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
3143 3652 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
3144 3653 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
3145 3654 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
3146 3655 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
3147 3656 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
3148 3657 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
3149 3658 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
3150 3659 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
3151 3660 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
3152 3661 4.207599 GTTGTTGTTGTTGTTGTTGTTGC 58.792 39.130 0.00 0.00 0.00 4.17
3153 3662 3.722147 TGTTGTTGTTGTTGTTGTTGCT 58.278 36.364 0.00 0.00 0.00 3.91
3154 3663 3.492383 TGTTGTTGTTGTTGTTGTTGCTG 59.508 39.130 0.00 0.00 0.00 4.41
3269 3778 1.686110 CGGGGGCAGAACTAGAGGT 60.686 63.158 0.00 0.00 0.00 3.85
3305 3814 1.197721 CACCAGTGGTTCGATTTCTGC 59.802 52.381 13.62 0.00 31.02 4.26
3311 3820 0.881118 GGTTCGATTTCTGCCTGCAA 59.119 50.000 0.00 0.00 0.00 4.08
3314 3823 0.523072 TCGATTTCTGCCTGCAAAGC 59.477 50.000 1.42 1.42 0.00 3.51
3333 3842 1.534729 CGCCAGAAGCTTACCCTTTT 58.465 50.000 0.00 0.00 40.39 2.27
3359 3868 4.104383 GGAAATTATCCCAGGAGCATCA 57.896 45.455 0.00 0.00 43.00 3.07
3386 3895 1.078848 CCTTGAGAACCCAGCTCCG 60.079 63.158 0.00 0.00 0.00 4.63
3450 3959 1.279271 CTAACCTTGTCAGGGGAGTGG 59.721 57.143 5.89 0.00 46.01 4.00
3486 3995 8.477419 AATCCTGGAAAAATGTGAGTTCTTAA 57.523 30.769 0.00 0.00 0.00 1.85
3506 4015 3.695830 AAACCTCTATCGGACAAAGCA 57.304 42.857 0.00 0.00 0.00 3.91
3551 4060 1.578206 CGAGAGTGCAGAGACCACGA 61.578 60.000 0.00 0.00 38.22 4.35
3563 4072 3.449227 CCACGAGGCGGTCTGCTA 61.449 66.667 3.10 0.00 45.43 3.49
3578 4087 0.950555 TGCTAGGAAACGTGCTGCAG 60.951 55.000 10.11 10.11 35.14 4.41
3598 4107 2.894126 AGAGGATATCAACCGTGCTAGG 59.106 50.000 4.83 0.00 37.30 3.02
3628 4137 2.673368 CGAGATTTTAGAGCACACACCC 59.327 50.000 0.00 0.00 0.00 4.61
3695 4212 7.548075 CGACCACTAACAAACCAATAGTTAGAT 59.452 37.037 15.90 3.93 44.56 1.98
3727 4247 4.382793 GGATCCACTTCTTACAGTACCACC 60.383 50.000 6.95 0.00 0.00 4.61
3891 4411 3.742327 GCACTGCATCTGGATACTAGCAA 60.742 47.826 0.00 0.00 37.61 3.91
3898 4418 5.475220 GCATCTGGATACTAGCAACTCTAGA 59.525 44.000 6.02 0.00 46.12 2.43
3917 4437 3.960571 AGAAATTCCACCTGGTCATCTG 58.039 45.455 0.00 0.00 36.34 2.90
4113 4634 5.278561 ATGACTACATTAGGCGAAGAGCTAC 60.279 44.000 0.00 0.00 38.68 3.58
4143 4664 9.056005 ACATAGTGCATTAATTATGGTACTGTG 57.944 33.333 19.62 19.62 34.66 3.66
4164 4685 2.000048 TGATTTTGGACCCCCTTAGCT 59.000 47.619 0.00 0.00 0.00 3.32
4173 4694 2.264794 CCCTTAGCTGGCGAACGT 59.735 61.111 0.00 0.00 0.00 3.99
4176 4697 0.872388 CCTTAGCTGGCGAACGTTTT 59.128 50.000 0.46 0.00 0.00 2.43
4191 4820 5.737290 CGAACGTTTTGATGACAGTTTCTTT 59.263 36.000 0.46 0.00 0.00 2.52
4193 4822 7.110216 CGAACGTTTTGATGACAGTTTCTTTAG 59.890 37.037 0.46 0.00 0.00 1.85
4206 4835 2.988010 TCTTTAGAGCGACATGGCAT 57.012 45.000 0.00 0.00 34.64 4.40
4207 4836 3.266510 TCTTTAGAGCGACATGGCATT 57.733 42.857 0.00 0.00 34.64 3.56
4208 4837 3.609853 TCTTTAGAGCGACATGGCATTT 58.390 40.909 0.00 0.00 34.64 2.32
4209 4838 4.009675 TCTTTAGAGCGACATGGCATTTT 58.990 39.130 0.00 0.00 34.64 1.82
4221 4850 1.269174 TGGCATTTTCGATGTGTGTGG 59.731 47.619 0.00 0.00 0.00 4.17
4223 4852 1.539388 GCATTTTCGATGTGTGTGGGA 59.461 47.619 0.00 0.00 0.00 4.37
4230 4859 1.660560 GATGTGTGTGGGATGGCAGC 61.661 60.000 0.00 0.00 0.00 5.25
4235 4864 0.253044 GTGTGGGATGGCAGCTTCTA 59.747 55.000 1.50 0.00 0.00 2.10
4236 4865 0.253044 TGTGGGATGGCAGCTTCTAC 59.747 55.000 1.50 0.00 0.00 2.59
4244 4873 1.082690 GGCAGCTTCTACAGAGCAAC 58.917 55.000 0.00 0.00 0.00 4.17
4257 4886 7.386059 TCTACAGAGCAACATGACATTTTCTA 58.614 34.615 0.00 0.00 0.00 2.10
4258 4887 6.492007 ACAGAGCAACATGACATTTTCTAG 57.508 37.500 0.00 0.00 0.00 2.43
4259 4888 5.413833 ACAGAGCAACATGACATTTTCTAGG 59.586 40.000 0.00 0.00 0.00 3.02
4265 4894 4.759782 ACATGACATTTTCTAGGAGGACG 58.240 43.478 0.00 0.00 0.00 4.79
4266 4895 3.887621 TGACATTTTCTAGGAGGACGG 57.112 47.619 0.00 0.00 0.00 4.79
4267 4896 2.093658 TGACATTTTCTAGGAGGACGGC 60.094 50.000 0.00 0.00 0.00 5.68
4268 4897 1.134788 ACATTTTCTAGGAGGACGGCG 60.135 52.381 4.80 4.80 0.00 6.46
4269 4898 1.134788 CATTTTCTAGGAGGACGGCGT 60.135 52.381 14.65 14.65 0.00 5.68
4270 4899 0.245539 TTTTCTAGGAGGACGGCGTG 59.754 55.000 21.19 0.00 0.00 5.34
4271 4900 0.896940 TTTCTAGGAGGACGGCGTGT 60.897 55.000 21.19 3.59 0.00 4.49
4272 4901 1.592400 TTCTAGGAGGACGGCGTGTG 61.592 60.000 21.19 0.00 0.00 3.82
4273 4902 2.282674 TAGGAGGACGGCGTGTGT 60.283 61.111 21.19 0.00 0.00 3.72
4274 4903 2.543687 CTAGGAGGACGGCGTGTGTG 62.544 65.000 21.19 0.00 0.00 3.82
4278 4907 4.388499 GGACGGCGTGTGTGGGAT 62.388 66.667 21.19 0.00 0.00 3.85
4279 4908 3.118454 GACGGCGTGTGTGGGATG 61.118 66.667 21.19 0.00 0.00 3.51
4280 4909 4.697756 ACGGCGTGTGTGGGATGG 62.698 66.667 13.76 0.00 0.00 3.51
4283 4912 3.434319 GCGTGTGTGGGATGGCAG 61.434 66.667 0.00 0.00 0.00 4.85
4284 4913 3.434319 CGTGTGTGGGATGGCAGC 61.434 66.667 0.00 0.00 0.00 5.25
4285 4914 2.034687 GTGTGTGGGATGGCAGCT 59.965 61.111 1.50 0.00 0.00 4.24
4286 4915 2.034532 TGTGTGGGATGGCAGCTG 59.965 61.111 10.11 10.11 0.00 4.24
4287 4916 2.753043 GTGTGGGATGGCAGCTGG 60.753 66.667 17.12 0.00 0.00 4.85
4288 4917 3.259314 TGTGGGATGGCAGCTGGT 61.259 61.111 17.12 0.00 0.00 4.00
4289 4918 2.439156 GTGGGATGGCAGCTGGTC 60.439 66.667 17.12 0.00 0.00 4.02
4290 4919 4.100084 TGGGATGGCAGCTGGTCG 62.100 66.667 17.12 0.00 0.00 4.79
4292 4921 4.783621 GGATGGCAGCTGGTCGCA 62.784 66.667 17.12 0.75 42.61 5.10
4293 4922 3.503363 GATGGCAGCTGGTCGCAC 61.503 66.667 17.12 0.00 42.61 5.34
4305 4934 1.524621 GTCGCACCATCCTCCCATG 60.525 63.158 0.00 0.00 0.00 3.66
4307 4936 1.524621 CGCACCATCCTCCCATGTC 60.525 63.158 0.00 0.00 0.00 3.06
4311 4940 1.070445 CCATCCTCCCATGTCGCTC 59.930 63.158 0.00 0.00 0.00 5.03
4321 4950 1.734465 CCATGTCGCTCTGAAGAAACC 59.266 52.381 0.00 0.00 0.00 3.27
4323 4952 0.387929 TGTCGCTCTGAAGAAACCGT 59.612 50.000 0.00 0.00 0.00 4.83
4328 4957 1.797025 CTCTGAAGAAACCGTCACCC 58.203 55.000 0.00 0.00 0.00 4.61
4348 5008 3.023735 GGAATGCCACCCTCCCCT 61.024 66.667 0.00 0.00 0.00 4.79
4349 5009 2.626467 GGAATGCCACCCTCCCCTT 61.626 63.158 0.00 0.00 0.00 3.95
4351 5011 1.856873 AATGCCACCCTCCCCTTGA 60.857 57.895 0.00 0.00 0.00 3.02
4354 5014 2.840753 GCCACCCTCCCCTTGAACA 61.841 63.158 0.00 0.00 0.00 3.18
4360 5020 0.394899 CCTCCCCTTGAACATCAGCC 60.395 60.000 0.00 0.00 0.00 4.85
4361 5021 0.329261 CTCCCCTTGAACATCAGCCA 59.671 55.000 0.00 0.00 0.00 4.75
4364 5024 1.617804 CCCCTTGAACATCAGCCACAT 60.618 52.381 0.00 0.00 0.00 3.21
4365 5025 2.357050 CCCCTTGAACATCAGCCACATA 60.357 50.000 0.00 0.00 0.00 2.29
4367 5027 3.379372 CCCTTGAACATCAGCCACATAAG 59.621 47.826 0.00 0.00 0.00 1.73
4391 5055 2.430332 TCCGATGATTTTTCAATGGGCC 59.570 45.455 0.00 0.00 0.00 5.80
4464 5128 5.361571 TCGTGAATATTTGGGCTACAGTCTA 59.638 40.000 0.00 0.00 0.00 2.59
4477 5141 6.463614 GGGCTACAGTCTATGAATGAACTGAT 60.464 42.308 8.24 0.00 31.74 2.90
4489 5153 7.169158 TGAATGAACTGATAAAATGAACCCC 57.831 36.000 0.00 0.00 0.00 4.95
4531 5195 1.339055 TGTATGTCTCCAGCACAAGCC 60.339 52.381 0.00 0.00 43.56 4.35
4534 5198 1.376553 GTCTCCAGCACAAGCCTCC 60.377 63.158 0.00 0.00 43.56 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.573166 TTCAAATACGAATTGAGGGATATCATT 57.427 29.630 4.83 0.00 38.01 2.57
1 2 9.003658 GTTCAAATACGAATTGAGGGATATCAT 57.996 33.333 4.83 0.00 38.01 2.45
2 3 7.990314 TGTTCAAATACGAATTGAGGGATATCA 59.010 33.333 4.83 0.00 38.01 2.15
3 4 8.378172 TGTTCAAATACGAATTGAGGGATATC 57.622 34.615 0.00 0.00 38.01 1.63
4 5 8.924511 ATGTTCAAATACGAATTGAGGGATAT 57.075 30.769 0.00 0.00 38.01 1.63
5 6 9.489084 CTATGTTCAAATACGAATTGAGGGATA 57.511 33.333 0.00 0.00 38.01 2.59
6 7 7.993183 ACTATGTTCAAATACGAATTGAGGGAT 59.007 33.333 0.00 0.00 38.01 3.85
7 8 7.335627 ACTATGTTCAAATACGAATTGAGGGA 58.664 34.615 0.00 0.00 38.01 4.20
8 9 7.553881 ACTATGTTCAAATACGAATTGAGGG 57.446 36.000 0.00 0.00 38.01 4.30
9 10 9.840427 AAAACTATGTTCAAATACGAATTGAGG 57.160 29.630 0.00 0.00 38.01 3.86
15 16 9.483916 TCTCTCAAAACTATGTTCAAATACGAA 57.516 29.630 0.00 0.00 0.00 3.85
16 17 9.653287 ATCTCTCAAAACTATGTTCAAATACGA 57.347 29.630 0.00 0.00 0.00 3.43
56 57 9.900710 TTTAACTAACGAAATGTTAATGCATGT 57.099 25.926 0.00 0.00 42.31 3.21
93 94 9.884636 GTCCCCTTAGTATTTTATGCAAAATTT 57.115 29.630 1.86 0.00 40.67 1.82
94 95 9.267071 AGTCCCCTTAGTATTTTATGCAAAATT 57.733 29.630 1.86 0.00 40.67 1.82
95 96 8.838649 AGTCCCCTTAGTATTTTATGCAAAAT 57.161 30.769 0.00 0.00 44.60 1.82
96 97 9.756571 TTAGTCCCCTTAGTATTTTATGCAAAA 57.243 29.630 0.00 0.00 38.00 2.44
97 98 9.930158 ATTAGTCCCCTTAGTATTTTATGCAAA 57.070 29.630 0.00 0.00 0.00 3.68
104 105 9.916360 CTGGTTTATTAGTCCCCTTAGTATTTT 57.084 33.333 0.00 0.00 0.00 1.82
105 106 8.500238 CCTGGTTTATTAGTCCCCTTAGTATTT 58.500 37.037 0.00 0.00 0.00 1.40
106 107 7.853003 TCCTGGTTTATTAGTCCCCTTAGTATT 59.147 37.037 0.00 0.00 0.00 1.89
107 108 7.291885 GTCCTGGTTTATTAGTCCCCTTAGTAT 59.708 40.741 0.00 0.00 0.00 2.12
108 109 6.612863 GTCCTGGTTTATTAGTCCCCTTAGTA 59.387 42.308 0.00 0.00 0.00 1.82
109 110 5.427806 GTCCTGGTTTATTAGTCCCCTTAGT 59.572 44.000 0.00 0.00 0.00 2.24
110 111 5.452917 CGTCCTGGTTTATTAGTCCCCTTAG 60.453 48.000 0.00 0.00 0.00 2.18
111 112 4.406649 CGTCCTGGTTTATTAGTCCCCTTA 59.593 45.833 0.00 0.00 0.00 2.69
112 113 3.199289 CGTCCTGGTTTATTAGTCCCCTT 59.801 47.826 0.00 0.00 0.00 3.95
113 114 2.770232 CGTCCTGGTTTATTAGTCCCCT 59.230 50.000 0.00 0.00 0.00 4.79
114 115 2.767960 TCGTCCTGGTTTATTAGTCCCC 59.232 50.000 0.00 0.00 0.00 4.81
115 116 4.439968 CTTCGTCCTGGTTTATTAGTCCC 58.560 47.826 0.00 0.00 0.00 4.46
116 117 4.081254 ACCTTCGTCCTGGTTTATTAGTCC 60.081 45.833 0.00 0.00 31.62 3.85
117 118 5.082251 ACCTTCGTCCTGGTTTATTAGTC 57.918 43.478 0.00 0.00 31.62 2.59
118 119 5.718607 ACTACCTTCGTCCTGGTTTATTAGT 59.281 40.000 0.00 0.00 37.74 2.24
119 120 6.218108 ACTACCTTCGTCCTGGTTTATTAG 57.782 41.667 0.00 0.00 37.74 1.73
120 121 6.891908 AGTACTACCTTCGTCCTGGTTTATTA 59.108 38.462 0.00 0.00 37.74 0.98
121 122 5.718607 AGTACTACCTTCGTCCTGGTTTATT 59.281 40.000 0.00 0.00 37.74 1.40
122 123 5.267587 AGTACTACCTTCGTCCTGGTTTAT 58.732 41.667 0.00 0.00 37.74 1.40
123 124 4.666512 AGTACTACCTTCGTCCTGGTTTA 58.333 43.478 0.00 0.00 37.74 2.01
124 125 3.504375 AGTACTACCTTCGTCCTGGTTT 58.496 45.455 0.00 0.00 37.74 3.27
125 126 3.166560 AGTACTACCTTCGTCCTGGTT 57.833 47.619 0.00 0.00 37.74 3.67
126 127 2.895242 AGTACTACCTTCGTCCTGGT 57.105 50.000 0.00 0.00 40.12 4.00
127 128 3.762823 AGAAAGTACTACCTTCGTCCTGG 59.237 47.826 0.00 0.00 0.00 4.45
128 129 5.388408 AAGAAAGTACTACCTTCGTCCTG 57.612 43.478 0.00 0.00 0.00 3.86
129 130 6.041296 TGAAAAGAAAGTACTACCTTCGTCCT 59.959 38.462 0.00 0.00 0.00 3.85
130 131 6.218746 TGAAAAGAAAGTACTACCTTCGTCC 58.781 40.000 0.00 0.00 0.00 4.79
131 132 7.886405 ATGAAAAGAAAGTACTACCTTCGTC 57.114 36.000 0.00 5.17 0.00 4.20
132 133 8.148999 AGAATGAAAAGAAAGTACTACCTTCGT 58.851 33.333 0.00 0.00 0.00 3.85
133 134 8.535690 AGAATGAAAAGAAAGTACTACCTTCG 57.464 34.615 0.00 0.00 0.00 3.79
202 204 2.808906 AAATCAAGAGGTGGCCCTAC 57.191 50.000 0.00 0.00 42.86 3.18
210 212 9.807921 TTCCTACAAAATTCTAAATCAAGAGGT 57.192 29.630 0.00 0.00 0.00 3.85
257 259 1.160137 ATTGAACGGTTCTCAGCAGC 58.840 50.000 20.53 0.00 0.00 5.25
261 263 3.062639 CGATCCAATTGAACGGTTCTCAG 59.937 47.826 20.53 8.77 35.79 3.35
267 269 1.271163 ACCACGATCCAATTGAACGGT 60.271 47.619 7.12 1.80 42.92 4.83
277 279 2.817258 GGAATTTGACAACCACGATCCA 59.183 45.455 0.00 0.00 0.00 3.41
279 281 4.693566 TGTAGGAATTTGACAACCACGATC 59.306 41.667 0.00 0.00 0.00 3.69
384 444 4.459390 TTGGATTTGAATGGACATGCTG 57.541 40.909 0.00 0.00 0.00 4.41
385 445 6.551975 TCATATTGGATTTGAATGGACATGCT 59.448 34.615 0.00 0.00 0.00 3.79
389 449 9.865152 TCTAATCATATTGGATTTGAATGGACA 57.135 29.630 0.00 0.00 36.54 4.02
454 514 5.183904 GGAAAAATTACATGCACTCAGACCT 59.816 40.000 0.00 0.00 0.00 3.85
455 515 5.183904 AGGAAAAATTACATGCACTCAGACC 59.816 40.000 0.00 0.00 0.00 3.85
456 516 6.150140 AGAGGAAAAATTACATGCACTCAGAC 59.850 38.462 0.00 0.00 0.00 3.51
457 517 6.240894 AGAGGAAAAATTACATGCACTCAGA 58.759 36.000 0.00 0.00 0.00 3.27
458 518 6.506500 AGAGGAAAAATTACATGCACTCAG 57.493 37.500 0.00 0.00 0.00 3.35
459 519 7.994425 TTAGAGGAAAAATTACATGCACTCA 57.006 32.000 0.00 0.00 0.00 3.41
460 520 9.860898 ATTTTAGAGGAAAAATTACATGCACTC 57.139 29.630 0.00 0.00 40.39 3.51
461 521 9.860898 GATTTTAGAGGAAAAATTACATGCACT 57.139 29.630 0.00 0.00 40.39 4.40
462 522 8.798153 CGATTTTAGAGGAAAAATTACATGCAC 58.202 33.333 0.00 0.00 40.39 4.57
463 523 8.735315 TCGATTTTAGAGGAAAAATTACATGCA 58.265 29.630 0.00 0.00 40.39 3.96
464 524 9.226345 CTCGATTTTAGAGGAAAAATTACATGC 57.774 33.333 0.00 0.00 40.39 4.06
467 527 8.234546 GCACTCGATTTTAGAGGAAAAATTACA 58.765 33.333 0.00 0.00 40.39 2.41
468 528 8.234546 TGCACTCGATTTTAGAGGAAAAATTAC 58.765 33.333 0.00 0.00 40.39 1.89
469 529 8.330466 TGCACTCGATTTTAGAGGAAAAATTA 57.670 30.769 0.00 0.00 40.39 1.40
470 530 7.214467 TGCACTCGATTTTAGAGGAAAAATT 57.786 32.000 0.00 0.00 40.39 1.82
471 531 6.817765 TGCACTCGATTTTAGAGGAAAAAT 57.182 33.333 0.00 0.00 40.39 1.82
472 532 6.627395 TTGCACTCGATTTTAGAGGAAAAA 57.373 33.333 0.00 0.00 40.39 1.94
473 533 6.293955 CCTTTGCACTCGATTTTAGAGGAAAA 60.294 38.462 0.00 0.00 41.24 2.29
474 534 5.181245 CCTTTGCACTCGATTTTAGAGGAAA 59.819 40.000 0.00 0.00 39.90 3.13
475 535 4.695455 CCTTTGCACTCGATTTTAGAGGAA 59.305 41.667 0.00 0.00 39.90 3.36
476 536 4.020573 TCCTTTGCACTCGATTTTAGAGGA 60.021 41.667 0.00 0.00 39.90 3.71
477 537 4.253685 TCCTTTGCACTCGATTTTAGAGG 58.746 43.478 0.00 0.00 39.90 3.69
478 538 5.862924 TTCCTTTGCACTCGATTTTAGAG 57.137 39.130 0.00 0.00 41.27 2.43
479 539 6.817765 AATTCCTTTGCACTCGATTTTAGA 57.182 33.333 0.00 0.00 0.00 2.10
480 540 7.308435 AGAAATTCCTTTGCACTCGATTTTAG 58.692 34.615 0.00 0.00 0.00 1.85
481 541 7.214467 AGAAATTCCTTTGCACTCGATTTTA 57.786 32.000 0.00 0.00 0.00 1.52
527 615 5.939883 TCGTCTGATTGACAGGATTTGAATT 59.060 36.000 0.00 0.00 45.60 2.17
596 685 7.830739 TGCTTCCAAGGAATTTTCTAAGATTC 58.169 34.615 1.35 0.00 33.28 2.52
604 693 4.616953 TCGTTTGCTTCCAAGGAATTTTC 58.383 39.130 1.35 0.00 36.23 2.29
624 713 7.114953 GTCAAAAAGAAAGAAAATAAGGGCTCG 59.885 37.037 0.00 0.00 0.00 5.03
663 752 3.371063 GTCGACGCCCTGTCCTCA 61.371 66.667 0.00 0.00 45.23 3.86
664 753 4.131088 GGTCGACGCCCTGTCCTC 62.131 72.222 9.92 0.00 45.23 3.71
665 754 4.680537 AGGTCGACGCCCTGTCCT 62.681 66.667 9.92 0.00 45.23 3.85
666 755 4.436998 CAGGTCGACGCCCTGTCC 62.437 72.222 16.65 0.00 45.23 4.02
670 759 4.003788 CCAACAGGTCGACGCCCT 62.004 66.667 9.92 0.00 0.00 5.19
672 761 4.681978 AGCCAACAGGTCGACGCC 62.682 66.667 9.92 0.00 0.00 5.68
673 762 3.414700 CAGCCAACAGGTCGACGC 61.415 66.667 9.92 6.10 0.00 5.19
674 763 2.738521 CCAGCCAACAGGTCGACG 60.739 66.667 9.92 0.00 0.00 5.12
675 764 2.358737 CCCAGCCAACAGGTCGAC 60.359 66.667 7.13 7.13 0.00 4.20
676 765 4.329545 GCCCAGCCAACAGGTCGA 62.330 66.667 0.00 0.00 0.00 4.20
677 766 4.641645 TGCCCAGCCAACAGGTCG 62.642 66.667 0.00 0.00 0.00 4.79
678 767 2.674380 CTGCCCAGCCAACAGGTC 60.674 66.667 0.00 0.00 0.00 3.85
688 777 3.060615 GCAACCTCAGCTGCCCAG 61.061 66.667 9.47 0.70 32.18 4.45
689 778 3.573229 AGCAACCTCAGCTGCCCA 61.573 61.111 9.47 0.00 41.61 5.36
694 783 2.033757 CTGGCAGCAACCTCAGCT 59.966 61.111 0.00 0.00 44.62 4.24
695 784 3.745803 GCTGGCAGCAACCTCAGC 61.746 66.667 33.33 4.00 44.34 4.26
696 785 3.060615 GGCTGGCAGCAACCTCAG 61.061 66.667 37.49 0.50 44.75 3.35
697 786 4.666253 GGGCTGGCAGCAACCTCA 62.666 66.667 37.49 0.00 44.75 3.86
698 787 4.666253 TGGGCTGGCAGCAACCTC 62.666 66.667 37.49 21.25 44.75 3.85
699 788 4.982701 GTGGGCTGGCAGCAACCT 62.983 66.667 37.49 0.00 44.75 3.50
705 794 3.815407 AACTTGGGTGGGCTGGCAG 62.815 63.158 10.94 10.94 0.00 4.85
706 795 3.808218 GAACTTGGGTGGGCTGGCA 62.808 63.158 2.88 0.00 0.00 4.92
707 796 2.991540 GAACTTGGGTGGGCTGGC 60.992 66.667 0.00 0.00 0.00 4.85
708 797 2.672996 CGAACTTGGGTGGGCTGG 60.673 66.667 0.00 0.00 0.00 4.85
709 798 1.672356 CTCGAACTTGGGTGGGCTG 60.672 63.158 0.00 0.00 0.00 4.85
710 799 2.113243 GACTCGAACTTGGGTGGGCT 62.113 60.000 0.00 0.00 0.00 5.19
711 800 1.671379 GACTCGAACTTGGGTGGGC 60.671 63.158 0.00 0.00 0.00 5.36
712 801 1.003718 GGACTCGAACTTGGGTGGG 60.004 63.158 0.00 0.00 0.00 4.61
713 802 1.003718 GGGACTCGAACTTGGGTGG 60.004 63.158 0.00 0.00 0.00 4.61
714 803 1.374252 CGGGACTCGAACTTGGGTG 60.374 63.158 0.00 0.00 42.43 4.61
715 804 2.580601 CCGGGACTCGAACTTGGGT 61.581 63.158 0.00 0.00 42.43 4.51
716 805 2.264794 CCGGGACTCGAACTTGGG 59.735 66.667 0.00 0.00 42.43 4.12
717 806 2.434359 GCCGGGACTCGAACTTGG 60.434 66.667 2.18 0.00 42.43 3.61
718 807 2.027625 GTGCCGGGACTCGAACTTG 61.028 63.158 20.19 0.00 42.43 3.16
719 808 2.342648 GTGCCGGGACTCGAACTT 59.657 61.111 20.19 0.00 42.43 2.66
720 809 4.052229 CGTGCCGGGACTCGAACT 62.052 66.667 24.50 0.00 42.43 3.01
735 824 1.536331 GAGAGAGAAAGACACGTCCGT 59.464 52.381 0.00 0.00 0.00 4.69
736 825 1.807742 AGAGAGAGAAAGACACGTCCG 59.192 52.381 0.00 0.00 0.00 4.79
737 826 3.078837 AGAGAGAGAGAAAGACACGTCC 58.921 50.000 0.00 0.00 0.00 4.79
738 827 4.000988 AGAGAGAGAGAGAAAGACACGTC 58.999 47.826 0.00 0.00 0.00 4.34
739 828 4.000988 GAGAGAGAGAGAGAAAGACACGT 58.999 47.826 0.00 0.00 0.00 4.49
740 829 4.253685 AGAGAGAGAGAGAGAAAGACACG 58.746 47.826 0.00 0.00 0.00 4.49
741 830 5.491982 AGAGAGAGAGAGAGAGAAAGACAC 58.508 45.833 0.00 0.00 0.00 3.67
742 831 5.485353 AGAGAGAGAGAGAGAGAGAAAGACA 59.515 44.000 0.00 0.00 0.00 3.41
743 832 5.983540 AGAGAGAGAGAGAGAGAGAAAGAC 58.016 45.833 0.00 0.00 0.00 3.01
744 833 5.129485 GGAGAGAGAGAGAGAGAGAGAAAGA 59.871 48.000 0.00 0.00 0.00 2.52
745 834 5.130145 AGGAGAGAGAGAGAGAGAGAGAAAG 59.870 48.000 0.00 0.00 0.00 2.62
746 835 5.032846 AGGAGAGAGAGAGAGAGAGAGAAA 58.967 45.833 0.00 0.00 0.00 2.52
747 836 4.624913 AGGAGAGAGAGAGAGAGAGAGAA 58.375 47.826 0.00 0.00 0.00 2.87
798 1107 7.729116 TGAGCAAGAAAGAATGGAGAAATTTT 58.271 30.769 0.00 0.00 0.00 1.82
855 1165 0.256464 TCCACAACCCGTTTGGAACT 59.744 50.000 8.24 0.00 39.84 3.01
934 1284 2.588877 CCGCGGCTTATCCAGTGG 60.589 66.667 14.67 1.40 34.48 4.00
1118 1483 2.683212 AGGAGAAGGCGAGCTGCT 60.683 61.111 0.00 0.00 45.43 4.24
1307 1681 4.479993 CCTGCTCCTTGGCCTCCG 62.480 72.222 3.32 0.00 0.00 4.63
1419 1793 2.455565 CCATGCGGGAGGGAAGGAT 61.456 63.158 0.00 0.00 40.01 3.24
1434 1808 0.692419 AGGAGCGGACCTTGATCCAT 60.692 55.000 6.47 0.00 44.32 3.41
1460 1834 3.922240 GCAAATGGTGTGAAGTGCATAAG 59.078 43.478 0.00 0.00 32.29 1.73
1461 1835 3.573538 AGCAAATGGTGTGAAGTGCATAA 59.426 39.130 0.00 0.00 34.44 1.90
1462 1836 3.156293 AGCAAATGGTGTGAAGTGCATA 58.844 40.909 0.00 0.00 34.44 3.14
1463 1837 1.965643 AGCAAATGGTGTGAAGTGCAT 59.034 42.857 0.00 0.00 34.44 3.96
1471 1846 4.275689 TCAGTAGTCAAAGCAAATGGTGTG 59.724 41.667 0.00 0.00 32.26 3.82
1505 1880 9.250624 CGAAATCCTATAAACAACAAACCAAAA 57.749 29.630 0.00 0.00 0.00 2.44
1508 1883 7.513371 ACGAAATCCTATAAACAACAAACCA 57.487 32.000 0.00 0.00 0.00 3.67
1510 1885 9.453325 TTCAACGAAATCCTATAAACAACAAAC 57.547 29.630 0.00 0.00 0.00 2.93
1557 1993 2.035442 GCGGAACTCAGGGCTGAAC 61.035 63.158 0.00 0.00 39.39 3.18
1590 2026 4.665833 TTTTGACAACTCGGAGAAGAGA 57.334 40.909 12.86 0.00 40.57 3.10
1599 2035 1.262950 TCCACGCATTTTGACAACTCG 59.737 47.619 0.00 0.00 0.00 4.18
1614 2050 1.226746 GAACCTGACCTTTGTCCACG 58.773 55.000 0.00 0.00 41.01 4.94
1647 2083 0.461516 AGACGACATCAGCTGCCATG 60.462 55.000 9.47 11.36 0.00 3.66
1665 2101 0.394899 GCCAGGAGTCCCCAATTGAG 60.395 60.000 7.12 0.00 37.41 3.02
1668 2104 1.915078 CGAGCCAGGAGTCCCCAATT 61.915 60.000 5.25 0.00 37.41 2.32
1750 2186 2.114616 CCATCTGTCACTTAGGCTCCT 58.885 52.381 0.00 0.00 0.00 3.69
1776 2212 5.360591 AGAACACTTCAACTGTCGATTCTT 58.639 37.500 0.00 0.00 0.00 2.52
1782 2218 3.458189 AGGAAGAACACTTCAACTGTCG 58.542 45.455 11.21 0.00 40.99 4.35
1794 2231 6.270000 TCAGAATTGGTAAGAGAGGAAGAACA 59.730 38.462 0.00 0.00 0.00 3.18
1795 2232 6.702329 TCAGAATTGGTAAGAGAGGAAGAAC 58.298 40.000 0.00 0.00 0.00 3.01
1824 2261 0.602638 TAACAGCAGGAACCAGTGCG 60.603 55.000 0.00 0.00 44.78 5.34
1833 2270 3.243367 GCAACACAACATTAACAGCAGGA 60.243 43.478 0.00 0.00 0.00 3.86
1954 2391 5.643777 GTGCTAGAAACCTACATGTCATTGT 59.356 40.000 0.00 0.00 0.00 2.71
1964 2401 5.086104 TGGAGATTGTGCTAGAAACCTAC 57.914 43.478 0.00 0.00 0.00 3.18
1992 2429 6.966534 AATGAACATGGGAGATGTTATTCC 57.033 37.500 0.00 0.00 41.76 3.01
2010 2447 7.939782 TGAGTTTGACTGAAGCAAATAATGAA 58.060 30.769 0.00 0.00 37.54 2.57
2180 2626 2.551938 GCCATTAGAATCTGCCTCTCCC 60.552 54.545 0.00 0.00 0.00 4.30
2298 2744 5.010314 TGCTGCATGTTCTCTGAAGAATTTT 59.990 36.000 0.00 0.00 43.26 1.82
2326 2772 4.207891 AGTTCACATTGTATCTTCGGCT 57.792 40.909 0.00 0.00 0.00 5.52
2329 2775 8.746751 CACTGTATAGTTCACATTGTATCTTCG 58.253 37.037 0.00 0.00 34.07 3.79
2343 2789 9.654663 AAGGACAAGTTAATCACTGTATAGTTC 57.345 33.333 0.00 0.00 35.12 3.01
2364 2810 5.938710 AGTACTAGCAAAAGCCTTTAAGGAC 59.061 40.000 16.18 6.26 37.67 3.85
2373 2819 4.938226 ACTCAATCAGTACTAGCAAAAGCC 59.062 41.667 0.00 0.00 31.37 4.35
2418 2912 8.837389 GTCTTTACTCACAAGGATTTTGTAACT 58.163 33.333 0.00 0.00 0.00 2.24
2419 2913 8.617809 TGTCTTTACTCACAAGGATTTTGTAAC 58.382 33.333 0.00 0.00 0.00 2.50
2420 2914 8.617809 GTGTCTTTACTCACAAGGATTTTGTAA 58.382 33.333 0.00 0.00 35.04 2.41
2421 2915 7.771361 TGTGTCTTTACTCACAAGGATTTTGTA 59.229 33.333 0.00 0.00 40.81 2.41
2422 2916 6.601613 TGTGTCTTTACTCACAAGGATTTTGT 59.398 34.615 0.00 0.00 40.81 2.83
2423 2917 7.026631 TGTGTCTTTACTCACAAGGATTTTG 57.973 36.000 0.00 0.00 40.81 2.44
2424 2918 7.823745 ATGTGTCTTTACTCACAAGGATTTT 57.176 32.000 2.27 0.00 45.51 1.82
2508 3002 2.694397 TCCTCCCAATCCTACAGATGG 58.306 52.381 0.00 0.00 34.56 3.51
2509 3003 4.989875 AATCCTCCCAATCCTACAGATG 57.010 45.455 0.00 0.00 34.56 2.90
2532 3026 0.323178 CAGCAAGTTCAGGCCTCCAT 60.323 55.000 0.00 0.00 0.00 3.41
2628 3122 6.713762 TTGACTTCTGTTTCCATGTCAATT 57.286 33.333 0.00 0.00 38.81 2.32
2705 3199 3.964031 AGAGAAGATGGGTTAGCTGGTAG 59.036 47.826 0.00 0.00 0.00 3.18
2711 3205 6.587273 AGAAACATAGAGAAGATGGGTTAGC 58.413 40.000 0.00 0.00 0.00 3.09
2749 3248 2.295070 TCACTTTCCAGATCGAACACGA 59.705 45.455 0.00 0.00 40.29 4.35
2750 3249 2.672714 TCACTTTCCAGATCGAACACG 58.327 47.619 0.00 0.00 0.00 4.49
2764 3263 7.595819 TTATTTTGGACCATCACTTCACTTT 57.404 32.000 0.00 0.00 0.00 2.66
2796 3295 6.310224 CCTATAAAGGGTCGTTTTGCATTTTG 59.690 38.462 0.00 0.00 39.48 2.44
2801 3300 4.289238 TCCTATAAAGGGTCGTTTTGCA 57.711 40.909 0.00 0.00 43.84 4.08
2802 3301 4.456566 TGTTCCTATAAAGGGTCGTTTTGC 59.543 41.667 0.00 0.00 43.84 3.68
2808 3307 7.852971 TGTTAATTGTTCCTATAAAGGGTCG 57.147 36.000 0.00 0.00 43.84 4.79
2835 3341 3.674423 GCAGCACATCGTAATTCAAGAC 58.326 45.455 0.00 0.00 0.00 3.01
2846 3352 0.168788 AAATCCAACGCAGCACATCG 59.831 50.000 0.00 0.00 0.00 3.84
2853 3359 6.475402 GGATACCAAAATTAAATCCAACGCAG 59.525 38.462 0.00 0.00 36.83 5.18
3063 3569 7.395772 TCACAGTAATGAAATTAAGCATGGGAA 59.604 33.333 0.00 0.00 41.12 3.97
3069 3575 8.791675 TGACAATCACAGTAATGAAATTAAGCA 58.208 29.630 0.00 0.00 41.12 3.91
3090 3598 5.012046 AGCGATATACTCCATGGATTGACAA 59.988 40.000 16.63 0.00 0.00 3.18
3104 3613 5.468746 ACAACAACAACAACAGCGATATACT 59.531 36.000 0.00 0.00 0.00 2.12
3109 3618 3.178267 CAACAACAACAACAACAGCGAT 58.822 40.909 0.00 0.00 0.00 4.58
3125 3634 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
3126 3635 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
3127 3636 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
3128 3637 5.727791 GCAACAACAACAACAACAACAACAA 60.728 36.000 0.00 0.00 0.00 2.83
3129 3638 4.260375 GCAACAACAACAACAACAACAACA 60.260 37.500 0.00 0.00 0.00 3.33
3130 3639 4.025313 AGCAACAACAACAACAACAACAAC 60.025 37.500 0.00 0.00 0.00 3.32
3131 3640 4.025396 CAGCAACAACAACAACAACAACAA 60.025 37.500 0.00 0.00 0.00 2.83
3132 3641 3.492383 CAGCAACAACAACAACAACAACA 59.508 39.130 0.00 0.00 0.00 3.33
3133 3642 3.664014 GCAGCAACAACAACAACAACAAC 60.664 43.478 0.00 0.00 0.00 3.32
3134 3643 2.478134 GCAGCAACAACAACAACAACAA 59.522 40.909 0.00 0.00 0.00 2.83
3135 3644 2.064762 GCAGCAACAACAACAACAACA 58.935 42.857 0.00 0.00 0.00 3.33
3136 3645 2.336667 AGCAGCAACAACAACAACAAC 58.663 42.857 0.00 0.00 0.00 3.32
3137 3646 2.739885 AGCAGCAACAACAACAACAA 57.260 40.000 0.00 0.00 0.00 2.83
3138 3647 2.029560 TGAAGCAGCAACAACAACAACA 60.030 40.909 0.00 0.00 0.00 3.33
3139 3648 2.605030 TGAAGCAGCAACAACAACAAC 58.395 42.857 0.00 0.00 0.00 3.32
3140 3649 3.523606 ATGAAGCAGCAACAACAACAA 57.476 38.095 0.00 0.00 0.00 2.83
3141 3650 3.188492 CAATGAAGCAGCAACAACAACA 58.812 40.909 0.00 0.00 0.00 3.33
3142 3651 2.033492 GCAATGAAGCAGCAACAACAAC 60.033 45.455 0.00 0.00 0.00 3.32
3143 3652 2.203401 GCAATGAAGCAGCAACAACAA 58.797 42.857 0.00 0.00 0.00 2.83
3144 3653 1.136500 TGCAATGAAGCAGCAACAACA 59.864 42.857 0.00 0.00 40.11 3.33
3145 3654 1.855513 TGCAATGAAGCAGCAACAAC 58.144 45.000 0.00 0.00 40.11 3.32
3146 3655 2.598686 TTGCAATGAAGCAGCAACAA 57.401 40.000 0.00 0.00 46.54 2.83
3150 3659 3.083293 TCACTATTGCAATGAAGCAGCA 58.917 40.909 22.27 0.00 46.54 4.41
3151 3660 3.692576 CTCACTATTGCAATGAAGCAGC 58.307 45.455 22.27 0.00 46.54 5.25
3152 3661 3.488721 GGCTCACTATTGCAATGAAGCAG 60.489 47.826 22.27 12.91 46.54 4.24
3153 3662 2.424601 GGCTCACTATTGCAATGAAGCA 59.575 45.455 22.27 0.04 43.99 3.91
3154 3663 2.686915 AGGCTCACTATTGCAATGAAGC 59.313 45.455 22.27 20.92 0.00 3.86
3269 3778 1.273781 TGGTGGATGAGTGGAGATGGA 60.274 52.381 0.00 0.00 0.00 3.41
3299 3808 2.336088 GCGCTTTGCAGGCAGAAA 59.664 55.556 0.00 0.00 45.45 2.52
3326 3835 3.774766 GGATAATTTCCTGGCAAAAGGGT 59.225 43.478 0.00 0.00 41.78 4.34
3333 3842 2.175499 CTCCTGGGATAATTTCCTGGCA 59.825 50.000 10.94 0.00 44.75 4.92
3386 3895 2.386661 TTCGATCTTGCAGAACCTCC 57.613 50.000 0.00 0.00 0.00 4.30
3430 3939 1.279271 CCACTCCCCTGACAAGGTTAG 59.721 57.143 0.00 0.00 42.74 2.34
3450 3959 1.228510 CCAGGATTTCAGGGGGAGC 59.771 63.158 0.00 0.00 0.00 4.70
3486 3995 3.008049 ACTGCTTTGTCCGATAGAGGTTT 59.992 43.478 0.00 0.00 39.76 3.27
3506 4015 0.105142 ACCACTGGTAGTCACCCACT 60.105 55.000 0.00 0.00 45.11 4.00
3551 4060 1.597461 GTTTCCTAGCAGACCGCCT 59.403 57.895 0.00 0.00 44.04 5.52
3563 4072 1.302033 CCTCTGCAGCACGTTTCCT 60.302 57.895 9.47 0.00 0.00 3.36
3578 4087 2.610727 GCCTAGCACGGTTGATATCCTC 60.611 54.545 0.00 0.00 0.00 3.71
3598 4107 5.962423 GTGCTCTAAAATCTCGATTTCAAGC 59.038 40.000 17.54 17.54 39.88 4.01
3628 4137 4.857037 TGACTGATAAACTTCGTGTCGATG 59.143 41.667 0.00 4.07 35.23 3.84
3664 4173 2.224113 TGGTTTGTTAGTGGTCGTCTCC 60.224 50.000 0.00 0.00 0.00 3.71
3695 4212 5.366477 TGTAAGAAGTGGATCCTATGCATGA 59.634 40.000 14.23 0.00 31.75 3.07
3727 4247 5.135508 TCTCCAACGAGAGGTTTTTAGAG 57.864 43.478 0.00 0.00 40.34 2.43
3891 4411 4.168101 TGACCAGGTGGAATTTCTAGAGT 58.832 43.478 0.00 0.00 38.94 3.24
3897 4417 2.424956 GCAGATGACCAGGTGGAATTTC 59.575 50.000 0.00 0.00 38.94 2.17
3898 4418 2.042162 AGCAGATGACCAGGTGGAATTT 59.958 45.455 0.00 0.00 38.94 1.82
3917 4437 3.733337 AGATCAATACGTTCATGGGAGC 58.267 45.455 0.00 0.00 0.00 4.70
4087 4608 5.478679 AGCTCTTCGCCTAATGTAGTCATAT 59.521 40.000 0.00 0.00 40.39 1.78
4088 4609 4.827835 AGCTCTTCGCCTAATGTAGTCATA 59.172 41.667 0.00 0.00 40.39 2.15
4089 4610 3.639094 AGCTCTTCGCCTAATGTAGTCAT 59.361 43.478 0.00 0.00 40.39 3.06
4104 4625 5.250235 TGCACTATGTACTGTAGCTCTTC 57.750 43.478 0.00 0.00 0.00 2.87
4136 4657 2.817844 GGGGTCCAAAATCACACAGTAC 59.182 50.000 0.00 0.00 0.00 2.73
4141 4662 2.009681 AAGGGGGTCCAAAATCACAC 57.990 50.000 0.00 0.00 34.83 3.82
4143 4664 2.100197 GCTAAGGGGGTCCAAAATCAC 58.900 52.381 0.00 0.00 34.83 3.06
4164 4685 1.262950 CTGTCATCAAAACGTTCGCCA 59.737 47.619 0.00 0.00 0.00 5.69
4173 4694 6.481976 TCGCTCTAAAGAAACTGTCATCAAAA 59.518 34.615 0.00 0.00 0.00 2.44
4176 4697 4.923871 GTCGCTCTAAAGAAACTGTCATCA 59.076 41.667 0.00 0.00 0.00 3.07
4191 4820 1.933181 CGAAAATGCCATGTCGCTCTA 59.067 47.619 0.00 0.00 0.00 2.43
4193 4822 0.726827 TCGAAAATGCCATGTCGCTC 59.273 50.000 6.24 0.00 33.58 5.03
4206 4835 2.158559 CCATCCCACACACATCGAAAA 58.841 47.619 0.00 0.00 0.00 2.29
4207 4836 1.819928 CCATCCCACACACATCGAAA 58.180 50.000 0.00 0.00 0.00 3.46
4208 4837 0.676466 GCCATCCCACACACATCGAA 60.676 55.000 0.00 0.00 0.00 3.71
4209 4838 1.078497 GCCATCCCACACACATCGA 60.078 57.895 0.00 0.00 0.00 3.59
4221 4850 1.809651 GCTCTGTAGAAGCTGCCATCC 60.810 57.143 0.00 0.00 0.00 3.51
4223 4852 0.907486 TGCTCTGTAGAAGCTGCCAT 59.093 50.000 0.00 0.00 0.00 4.40
4230 4859 6.492007 AAATGTCATGTTGCTCTGTAGAAG 57.508 37.500 0.00 0.00 0.00 2.85
4235 4864 5.413833 CCTAGAAAATGTCATGTTGCTCTGT 59.586 40.000 0.00 0.00 0.00 3.41
4236 4865 5.645067 TCCTAGAAAATGTCATGTTGCTCTG 59.355 40.000 0.00 0.00 0.00 3.35
4244 4873 4.122776 CCGTCCTCCTAGAAAATGTCATG 58.877 47.826 0.00 0.00 0.00 3.07
4257 4886 3.991051 CACACACGCCGTCCTCCT 61.991 66.667 0.00 0.00 0.00 3.69
4266 4895 3.434319 CTGCCATCCCACACACGC 61.434 66.667 0.00 0.00 0.00 5.34
4267 4896 3.434319 GCTGCCATCCCACACACG 61.434 66.667 0.00 0.00 0.00 4.49
4268 4897 2.034687 AGCTGCCATCCCACACAC 59.965 61.111 0.00 0.00 0.00 3.82
4269 4898 2.034532 CAGCTGCCATCCCACACA 59.965 61.111 0.00 0.00 0.00 3.72
4270 4899 2.753043 CCAGCTGCCATCCCACAC 60.753 66.667 8.66 0.00 0.00 3.82
4271 4900 3.259314 ACCAGCTGCCATCCCACA 61.259 61.111 8.66 0.00 0.00 4.17
4272 4901 2.439156 GACCAGCTGCCATCCCAC 60.439 66.667 8.66 0.00 0.00 4.61
4273 4902 4.100084 CGACCAGCTGCCATCCCA 62.100 66.667 8.66 0.00 0.00 4.37
4286 4915 2.746375 ATGGGAGGATGGTGCGACC 61.746 63.158 0.00 0.00 39.22 4.79
4287 4916 1.524621 CATGGGAGGATGGTGCGAC 60.525 63.158 0.00 0.00 0.00 5.19
4288 4917 1.971505 GACATGGGAGGATGGTGCGA 61.972 60.000 0.00 0.00 0.00 5.10
4289 4918 1.524621 GACATGGGAGGATGGTGCG 60.525 63.158 0.00 0.00 0.00 5.34
4290 4919 1.524621 CGACATGGGAGGATGGTGC 60.525 63.158 0.00 0.00 0.00 5.01
4291 4920 1.524621 GCGACATGGGAGGATGGTG 60.525 63.158 0.00 0.00 0.00 4.17
4292 4921 1.690219 GAGCGACATGGGAGGATGGT 61.690 60.000 0.00 0.00 0.00 3.55
4293 4922 1.070445 GAGCGACATGGGAGGATGG 59.930 63.158 0.00 0.00 0.00 3.51
4294 4923 0.249784 CAGAGCGACATGGGAGGATG 60.250 60.000 0.00 0.00 0.00 3.51
4295 4924 0.397675 TCAGAGCGACATGGGAGGAT 60.398 55.000 0.00 0.00 0.00 3.24
4296 4925 0.614697 TTCAGAGCGACATGGGAGGA 60.615 55.000 0.00 0.00 0.00 3.71
4297 4926 0.179089 CTTCAGAGCGACATGGGAGG 60.179 60.000 0.00 0.00 0.00 4.30
4298 4927 0.820226 TCTTCAGAGCGACATGGGAG 59.180 55.000 0.00 0.00 0.00 4.30
4299 4928 1.266178 TTCTTCAGAGCGACATGGGA 58.734 50.000 0.00 0.00 0.00 4.37
4300 4929 1.734465 GTTTCTTCAGAGCGACATGGG 59.266 52.381 0.00 0.00 0.00 4.00
4305 4934 1.061485 GACGGTTTCTTCAGAGCGAC 58.939 55.000 1.82 0.00 39.78 5.19
4307 4936 0.784778 GTGACGGTTTCTTCAGAGCG 59.215 55.000 0.00 0.00 41.99 5.03
4311 4940 1.226746 GTGGGTGACGGTTTCTTCAG 58.773 55.000 0.00 0.00 0.00 3.02
4323 4952 2.033448 GTGGCATTCCGTGGGTGA 59.967 61.111 0.00 0.00 34.14 4.02
4328 4957 2.438434 GGAGGGTGGCATTCCGTG 60.438 66.667 0.00 0.00 34.14 4.94
4332 4992 1.380380 CAAGGGGAGGGTGGCATTC 60.380 63.158 0.00 0.00 0.00 2.67
4348 5008 5.357878 GGAATCTTATGTGGCTGATGTTCAA 59.642 40.000 0.00 0.00 0.00 2.69
4349 5009 4.883585 GGAATCTTATGTGGCTGATGTTCA 59.116 41.667 0.00 0.00 0.00 3.18
4351 5011 3.879295 CGGAATCTTATGTGGCTGATGTT 59.121 43.478 0.00 0.00 0.00 2.71
4354 5014 4.040829 TCATCGGAATCTTATGTGGCTGAT 59.959 41.667 0.00 0.00 0.00 2.90
4360 5020 9.740239 ATTGAAAAATCATCGGAATCTTATGTG 57.260 29.630 0.00 0.00 0.00 3.21
4361 5021 9.740239 CATTGAAAAATCATCGGAATCTTATGT 57.260 29.630 0.00 0.00 0.00 2.29
4364 5024 7.684187 GCCCATTGAAAAATCATCGGAATCTTA 60.684 37.037 0.00 0.00 0.00 2.10
4365 5025 6.576185 CCCATTGAAAAATCATCGGAATCTT 58.424 36.000 0.00 0.00 0.00 2.40
4367 5027 4.746611 GCCCATTGAAAAATCATCGGAATC 59.253 41.667 0.00 0.00 0.00 2.52
4391 5055 7.296628 AGGAGTAGTAGCTTATGATTTGGAG 57.703 40.000 0.00 0.00 0.00 3.86
4453 5117 5.907207 TCAGTTCATTCATAGACTGTAGCC 58.093 41.667 0.00 0.00 0.00 3.93
4464 5128 7.399765 TGGGGTTCATTTTATCAGTTCATTCAT 59.600 33.333 0.00 0.00 0.00 2.57
4477 5141 7.121020 GGTACGTAATTTCTGGGGTTCATTTTA 59.879 37.037 0.00 0.00 0.00 1.52
4531 5195 3.068873 AGGAGAAGCAACGCTATAAGGAG 59.931 47.826 0.00 0.00 38.25 3.69
4534 5198 4.046938 TCAGGAGAAGCAACGCTATAAG 57.953 45.455 0.00 0.00 38.25 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.