Multiple sequence alignment - TraesCS2B01G457000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G457000 chr2B 100.000 4636 0 0 1 4636 651737700 651733065 0.000000e+00 8562.0
1 TraesCS2B01G457000 chr2D 94.074 1890 85 15 2037 3920 545011917 545010049 0.000000e+00 2844.0
2 TraesCS2B01G457000 chr2D 93.571 560 28 5 1399 1950 545012511 545011952 0.000000e+00 828.0
3 TraesCS2B01G457000 chr2D 84.167 840 45 44 613 1397 545016338 545015532 0.000000e+00 734.0
4 TraesCS2B01G457000 chr2D 90.377 239 18 3 298 531 545016741 545016503 4.510000e-80 309.0
5 TraesCS2B01G457000 chr2D 85.000 180 24 3 4107 4285 545009701 545009524 3.690000e-41 180.0
6 TraesCS2B01G457000 chr2D 97.727 44 1 0 525 568 545016478 545016435 4.970000e-10 76.8
7 TraesCS2B01G457000 chr2A 93.631 1837 92 13 2036 3865 688413292 688415110 0.000000e+00 2721.0
8 TraesCS2B01G457000 chr2A 91.294 1677 92 17 298 1947 688411595 688413244 0.000000e+00 2239.0
9 TraesCS2B01G457000 chr2A 94.614 557 27 3 3310 3865 688415332 688415886 0.000000e+00 859.0
10 TraesCS2B01G457000 chr2A 94.461 343 16 2 298 637 688404945 688405287 4.110000e-145 525.0
11 TraesCS2B01G457000 chr2A 82.911 316 28 14 6 295 688410180 688410495 1.280000e-65 261.0
12 TraesCS2B01G457000 chr2A 79.206 428 47 25 4170 4563 688418740 688419159 4.600000e-65 259.0
13 TraesCS2B01G457000 chr2A 82.540 315 29 12 6 295 688403549 688403862 2.140000e-63 254.0
14 TraesCS2B01G457000 chr1A 86.408 206 26 2 6 210 57142305 57142509 1.680000e-54 224.0
15 TraesCS2B01G457000 chr1D 83.036 224 34 4 6 227 235582066 235582287 2.830000e-47 200.0
16 TraesCS2B01G457000 chr7D 85.340 191 27 1 6 195 30483663 30483473 3.660000e-46 196.0
17 TraesCS2B01G457000 chr7D 83.770 191 30 1 6 195 386352418 386352228 3.690000e-41 180.0
18 TraesCS2B01G457000 chr3B 83.085 201 33 1 3 202 204392512 204392712 1.020000e-41 182.0
19 TraesCS2B01G457000 chr5D 83.684 190 31 0 6 195 547487183 547487372 3.690000e-41 180.0
20 TraesCS2B01G457000 chr7B 80.531 226 39 4 6 228 153322431 153322208 7.980000e-38 169.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G457000 chr2B 651733065 651737700 4635 True 8562.000000 8562 100.000000 1 4636 1 chr2B.!!$R1 4635
1 TraesCS2B01G457000 chr2D 545009524 545016741 7217 True 828.633333 2844 90.819333 298 4285 6 chr2D.!!$R1 3987
2 TraesCS2B01G457000 chr2A 688410180 688419159 8979 False 1267.800000 2721 88.331200 6 4563 5 chr2A.!!$F2 4557
3 TraesCS2B01G457000 chr2A 688403549 688405287 1738 False 389.500000 525 88.500500 6 637 2 chr2A.!!$F1 631

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
131 133 0.036022 GGGCTGGATATGAGAGGTGC 59.964 60.0 0.0 0.0 0.00 5.01 F
173 175 0.036671 CCCGTTTAAGAAGCCCGTCT 60.037 55.0 0.0 0.0 0.00 4.18 F
1176 2452 0.179156 CGCCACCATGACATTCTTGC 60.179 55.0 0.0 0.0 0.00 4.01 F
2614 6935 0.242555 TTTTTCGCCATTTCGAGCCC 59.757 50.0 0.0 0.0 39.82 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1152 2424 0.244450 AATGTCATGGTGGCGCAAAG 59.756 50.0 10.83 0.0 0.00 2.77 R
1531 5830 0.822164 GATTGAATTGCTGGCTGCCT 59.178 50.0 21.03 0.0 42.00 4.75 R
2990 7313 0.108138 AGGCGCCAGCTTGTTACTAG 60.108 55.0 31.54 0.0 44.37 2.57 R
3922 11456 0.178068 ACATGTGGGCCGTGACTATC 59.822 55.0 0.00 0.0 34.01 2.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 2.202756 GCGTGAGACCCCATCGTC 60.203 66.667 0.00 0.00 0.00 4.20
63 64 2.102357 CGTGAGACCCCATCGTCG 59.898 66.667 0.00 0.00 37.85 5.12
68 69 2.758737 GACCCCATCGTCGGTCCT 60.759 66.667 0.00 0.00 42.39 3.85
131 133 0.036022 GGGCTGGATATGAGAGGTGC 59.964 60.000 0.00 0.00 0.00 5.01
161 163 1.967494 GGCGTTTGAGGCCCGTTTA 60.967 57.895 0.00 0.00 42.98 2.01
165 167 1.874872 CGTTTGAGGCCCGTTTAAGAA 59.125 47.619 0.00 0.00 0.00 2.52
173 175 0.036671 CCCGTTTAAGAAGCCCGTCT 60.037 55.000 0.00 0.00 0.00 4.18
180 182 2.579684 AAGAAGCCCGTCTGGATCGC 62.580 60.000 0.00 0.00 37.49 4.58
203 205 0.242825 TTCGTGACCGGTCAGTGATC 59.757 55.000 37.04 23.07 40.75 2.92
204 206 0.891904 TCGTGACCGGTCAGTGATCA 60.892 55.000 37.04 12.02 40.75 2.92
207 209 1.257750 TGACCGGTCAGTGATCAGGG 61.258 60.000 33.23 7.34 34.14 4.45
210 212 2.982130 GGTCAGTGATCAGGGCGT 59.018 61.111 0.00 0.00 0.00 5.68
211 213 1.296715 GGTCAGTGATCAGGGCGTT 59.703 57.895 0.00 0.00 0.00 4.84
212 214 0.741221 GGTCAGTGATCAGGGCGTTC 60.741 60.000 0.00 0.00 0.00 3.95
232 234 1.905922 GCTGAGGCGTTTGAGACTGC 61.906 60.000 0.00 0.00 0.00 4.40
236 238 1.604278 GAGGCGTTTGAGACTGCTTTT 59.396 47.619 0.00 0.00 0.00 2.27
237 239 2.806244 GAGGCGTTTGAGACTGCTTTTA 59.194 45.455 0.00 0.00 0.00 1.52
238 240 2.548480 AGGCGTTTGAGACTGCTTTTAC 59.452 45.455 0.00 0.00 0.00 2.01
240 242 3.242936 GGCGTTTGAGACTGCTTTTACAA 60.243 43.478 0.00 0.00 0.00 2.41
280 306 7.932335 TGTATCCAAACGTTACACTTTGAAAT 58.068 30.769 0.00 0.00 30.20 2.17
289 315 6.175087 CGTTACACTTTGAAATGTTTTGCAC 58.825 36.000 0.00 0.00 0.00 4.57
292 318 4.999950 ACACTTTGAAATGTTTTGCACCAA 59.000 33.333 0.00 0.00 0.00 3.67
294 320 6.022821 CACTTTGAAATGTTTTGCACCAAAG 58.977 36.000 0.00 0.00 42.02 2.77
295 321 4.612932 TTGAAATGTTTTGCACCAAAGC 57.387 36.364 0.00 0.00 34.72 3.51
325 1452 0.508641 CTCCGAGTTTGTGTTCTGCG 59.491 55.000 0.00 0.00 0.00 5.18
326 1453 0.878523 TCCGAGTTTGTGTTCTGCGG 60.879 55.000 0.00 0.00 38.68 5.69
359 1486 1.135915 CGCTACCACTTCTCTGCTCAT 59.864 52.381 0.00 0.00 0.00 2.90
462 1591 3.000819 TGGCCTGACCCCTACACG 61.001 66.667 3.32 0.00 37.83 4.49
523 1652 7.132863 GGAAAGAATTAATATCGCAGAACACC 58.867 38.462 0.00 0.00 43.58 4.16
622 1838 4.729868 ACTCCTCTGTACCAAGCAAAAAT 58.270 39.130 0.00 0.00 0.00 1.82
623 1839 5.876357 ACTCCTCTGTACCAAGCAAAAATA 58.124 37.500 0.00 0.00 0.00 1.40
637 1854 7.315142 CAAGCAAAAATAGCCAAGAATCTGTA 58.685 34.615 0.00 0.00 0.00 2.74
666 1887 1.270907 TGCAGAGGAGGGAGAAACTC 58.729 55.000 0.00 0.00 0.00 3.01
730 1956 1.139095 GCCTTGCTGCATGAAGAGC 59.861 57.895 16.19 4.84 35.65 4.09
731 1957 1.807886 CCTTGCTGCATGAAGAGCC 59.192 57.895 16.19 0.00 34.04 4.70
732 1958 0.963856 CCTTGCTGCATGAAGAGCCA 60.964 55.000 16.19 0.00 34.04 4.75
733 1959 0.452184 CTTGCTGCATGAAGAGCCAG 59.548 55.000 4.31 1.86 34.04 4.85
735 1961 1.077930 GCTGCATGAAGAGCCAGGA 60.078 57.895 4.31 0.00 0.00 3.86
736 1962 0.465824 GCTGCATGAAGAGCCAGGAT 60.466 55.000 4.31 0.00 0.00 3.24
820 2051 4.695231 GCCACTTGCACAGCGCTG 62.695 66.667 34.89 34.89 43.06 5.18
821 2052 4.695231 CCACTTGCACAGCGCTGC 62.695 66.667 36.28 25.11 43.06 5.25
822 2053 3.657059 CACTTGCACAGCGCTGCT 61.657 61.111 36.28 20.79 43.06 4.24
823 2054 2.031012 ACTTGCACAGCGCTGCTA 59.969 55.556 36.28 20.21 43.06 3.49
845 2076 1.457303 CCGCTGCTATTTATGTCGCTC 59.543 52.381 0.00 0.00 0.00 5.03
846 2077 1.457303 CGCTGCTATTTATGTCGCTCC 59.543 52.381 0.00 0.00 0.00 4.70
847 2078 2.483876 GCTGCTATTTATGTCGCTCCA 58.516 47.619 0.00 0.00 0.00 3.86
848 2079 2.221981 GCTGCTATTTATGTCGCTCCAC 59.778 50.000 0.00 0.00 0.00 4.02
978 2250 1.562783 AGGAGGAAGAGAAAGGTCCG 58.437 55.000 0.00 0.00 36.49 4.79
984 2256 0.685660 AAGAGAAAGGTCCGGTCACC 59.314 55.000 0.00 1.89 36.58 4.02
1050 2322 3.044305 GTGGTGACGCTGGTGCTC 61.044 66.667 0.00 0.00 38.02 4.26
1132 2404 0.466372 GGCCAAAGGAGCAGGTATCC 60.466 60.000 0.00 0.00 37.07 2.59
1152 2424 1.883725 GCGTCACTTCGTTCCGTTCC 61.884 60.000 0.00 0.00 0.00 3.62
1167 2443 1.228398 TTCCTTTGCGCCACCATGA 60.228 52.632 4.18 0.00 0.00 3.07
1176 2452 0.179156 CGCCACCATGACATTCTTGC 60.179 55.000 0.00 0.00 0.00 4.01
1194 2470 2.652662 GCATTCTTGCTATTCGACCG 57.347 50.000 0.00 0.00 45.77 4.79
1207 2483 3.881780 TTCGACCGTGGTTAACATTTG 57.118 42.857 8.10 0.00 0.00 2.32
1208 2484 1.532007 TCGACCGTGGTTAACATTTGC 59.468 47.619 8.10 0.00 0.00 3.68
1209 2485 1.533731 CGACCGTGGTTAACATTTGCT 59.466 47.619 8.10 0.00 0.00 3.91
1210 2486 2.664424 CGACCGTGGTTAACATTTGCTG 60.664 50.000 8.10 0.00 0.00 4.41
1211 2487 2.292292 GACCGTGGTTAACATTTGCTGT 59.708 45.455 8.10 0.00 40.84 4.40
1212 2488 2.034053 ACCGTGGTTAACATTTGCTGTG 59.966 45.455 8.10 0.00 38.39 3.66
1213 2489 2.050691 CGTGGTTAACATTTGCTGTGC 58.949 47.619 8.10 0.00 38.39 4.57
1214 2490 2.542618 CGTGGTTAACATTTGCTGTGCA 60.543 45.455 8.10 0.00 38.39 4.57
1215 2491 2.794350 GTGGTTAACATTTGCTGTGCAC 59.206 45.455 10.75 10.75 38.71 4.57
1216 2492 2.223923 TGGTTAACATTTGCTGTGCACC 60.224 45.455 15.69 0.00 38.71 5.01
1217 2493 2.403259 GTTAACATTTGCTGTGCACCC 58.597 47.619 15.69 5.99 38.71 4.61
1218 2494 0.965439 TAACATTTGCTGTGCACCCC 59.035 50.000 15.69 5.59 38.71 4.95
1219 2495 0.760189 AACATTTGCTGTGCACCCCT 60.760 50.000 15.69 0.00 38.71 4.79
1220 2496 0.760189 ACATTTGCTGTGCACCCCTT 60.760 50.000 15.69 0.00 38.71 3.95
1221 2497 0.320073 CATTTGCTGTGCACCCCTTG 60.320 55.000 15.69 0.83 38.71 3.61
1222 2498 1.474332 ATTTGCTGTGCACCCCTTGG 61.474 55.000 15.69 0.00 38.71 3.61
1224 2500 2.985847 GCTGTGCACCCCTTGGTC 60.986 66.667 15.69 0.00 45.57 4.02
1225 2501 2.669569 CTGTGCACCCCTTGGTCG 60.670 66.667 15.69 0.00 45.57 4.79
1226 2502 4.263572 TGTGCACCCCTTGGTCGG 62.264 66.667 15.69 0.00 45.57 4.79
1280 2556 1.595357 GGTGTACCACTTCTCCCCG 59.405 63.158 0.00 0.00 34.40 5.73
1335 2615 3.118038 TCACATGGAGGTAATTAGGCCAC 60.118 47.826 5.01 0.00 0.00 5.01
1347 2627 6.602009 GGTAATTAGGCCACTGTAATTGAACT 59.398 38.462 5.01 0.00 32.39 3.01
1397 2677 9.626045 AAATAGTCTTTTGGAAATGAAACGATC 57.374 29.630 0.00 0.00 0.00 3.69
1571 5870 1.542547 CCGGTATGGCATACACCCTTC 60.543 57.143 32.19 16.70 37.48 3.46
1603 5903 0.773644 ATGCAGTCACAACTTCCCCT 59.226 50.000 0.00 0.00 31.71 4.79
1624 5924 5.393461 CCCTTCTAAAACAGATCAATGTGGC 60.393 44.000 0.00 0.00 32.52 5.01
1626 5926 3.689161 TCTAAAACAGATCAATGTGGCGG 59.311 43.478 0.00 0.00 32.52 6.13
1635 5935 0.945265 CAATGTGGCGGCACCTTTTG 60.945 55.000 35.54 29.09 40.22 2.44
1656 5956 4.545610 TGCGATTTTCTTGTTGAATCACC 58.454 39.130 0.00 0.00 34.24 4.02
1705 6005 2.677914 TGGAACAGAGTCAAGGTCAGA 58.322 47.619 3.48 0.00 0.00 3.27
1720 6020 1.655654 CAGATACTGCGACGGCTCG 60.656 63.158 0.00 2.61 43.28 5.03
1738 6038 2.448477 GTCGTTTACCGGCGATGTT 58.552 52.632 9.30 0.00 39.38 2.71
1751 6051 1.464997 GCGATGTTGAAGAAGTGGACC 59.535 52.381 0.00 0.00 0.00 4.46
1761 6061 3.703001 AGAAGTGGACCCTGTATGTTG 57.297 47.619 0.00 0.00 0.00 3.33
1775 6075 4.724399 TGTATGTTGTGGACTTGGATTGT 58.276 39.130 0.00 0.00 0.00 2.71
1920 6227 1.895131 GGGGATGAGCAAAGCAAAGAA 59.105 47.619 0.00 0.00 0.00 2.52
1928 6235 6.088016 TGAGCAAAGCAAAGAATGTATGTT 57.912 33.333 0.00 0.00 0.00 2.71
1937 6245 5.396484 CAAAGAATGTATGTTCACTGCTGG 58.604 41.667 0.00 0.00 0.00 4.85
1950 6269 6.154534 TGTTCACTGCTGGTAACTAGTATCAT 59.845 38.462 0.00 0.00 37.61 2.45
1951 6270 6.791867 TCACTGCTGGTAACTAGTATCATT 57.208 37.500 0.00 0.00 37.61 2.57
1953 6272 7.265673 TCACTGCTGGTAACTAGTATCATTTC 58.734 38.462 0.00 0.00 37.61 2.17
1954 6273 7.124298 TCACTGCTGGTAACTAGTATCATTTCT 59.876 37.037 0.00 0.00 37.61 2.52
1956 6275 8.322091 ACTGCTGGTAACTAGTATCATTTCTTT 58.678 33.333 0.00 0.00 37.61 2.52
1957 6276 8.718102 TGCTGGTAACTAGTATCATTTCTTTC 57.282 34.615 0.00 0.00 37.61 2.62
1958 6277 8.540388 TGCTGGTAACTAGTATCATTTCTTTCT 58.460 33.333 0.00 0.00 37.61 2.52
1977 6296 2.709170 TTTTTGACGTGATGCCGGT 58.291 47.368 1.90 0.00 0.00 5.28
1980 6299 1.025812 TTTGACGTGATGCCGGTTTT 58.974 45.000 1.90 0.00 0.00 2.43
1981 6300 1.880271 TTGACGTGATGCCGGTTTTA 58.120 45.000 1.90 0.00 0.00 1.52
1982 6301 2.102070 TGACGTGATGCCGGTTTTAT 57.898 45.000 1.90 0.00 0.00 1.40
1983 6302 3.248495 TGACGTGATGCCGGTTTTATA 57.752 42.857 1.90 0.00 0.00 0.98
1984 6303 3.191669 TGACGTGATGCCGGTTTTATAG 58.808 45.455 1.90 0.00 0.00 1.31
1986 6305 1.871039 CGTGATGCCGGTTTTATAGGG 59.129 52.381 1.90 0.00 0.00 3.53
1988 6307 3.547746 GTGATGCCGGTTTTATAGGGAA 58.452 45.455 1.90 0.00 0.00 3.97
1990 6309 4.399934 GTGATGCCGGTTTTATAGGGAAAA 59.600 41.667 1.90 0.00 0.00 2.29
1991 6310 5.017490 TGATGCCGGTTTTATAGGGAAAAA 58.983 37.500 1.90 0.00 30.36 1.94
1992 6311 5.126384 TGATGCCGGTTTTATAGGGAAAAAG 59.874 40.000 1.90 0.00 30.36 2.27
1993 6312 4.664392 TGCCGGTTTTATAGGGAAAAAGA 58.336 39.130 1.90 0.00 30.36 2.52
1994 6313 5.265989 TGCCGGTTTTATAGGGAAAAAGAT 58.734 37.500 1.90 0.00 30.36 2.40
1995 6314 5.126384 TGCCGGTTTTATAGGGAAAAAGATG 59.874 40.000 1.90 0.00 30.36 2.90
1996 6315 5.358725 GCCGGTTTTATAGGGAAAAAGATGA 59.641 40.000 1.90 0.00 30.36 2.92
1997 6316 6.679638 GCCGGTTTTATAGGGAAAAAGATGAC 60.680 42.308 1.90 0.00 30.36 3.06
1998 6317 6.376018 CCGGTTTTATAGGGAAAAAGATGACA 59.624 38.462 0.00 0.00 30.36 3.58
1999 6318 7.248437 CGGTTTTATAGGGAAAAAGATGACAC 58.752 38.462 0.00 0.00 30.36 3.67
2000 6319 7.248437 GGTTTTATAGGGAAAAAGATGACACG 58.752 38.462 0.00 0.00 30.36 4.49
2001 6320 7.094506 GGTTTTATAGGGAAAAAGATGACACGT 60.095 37.037 0.00 0.00 30.36 4.49
2002 6321 8.938906 GTTTTATAGGGAAAAAGATGACACGTA 58.061 33.333 0.00 0.00 30.36 3.57
2003 6322 9.675464 TTTTATAGGGAAAAAGATGACACGTAT 57.325 29.630 0.00 0.00 0.00 3.06
2004 6323 9.675464 TTTATAGGGAAAAAGATGACACGTATT 57.325 29.630 0.00 0.00 0.00 1.89
2005 6324 7.787725 ATAGGGAAAAAGATGACACGTATTC 57.212 36.000 0.00 0.00 0.00 1.75
2006 6325 5.556915 AGGGAAAAAGATGACACGTATTCA 58.443 37.500 1.76 1.76 0.00 2.57
2007 6326 6.180472 AGGGAAAAAGATGACACGTATTCAT 58.820 36.000 10.78 10.78 36.37 2.57
2008 6327 6.659242 AGGGAAAAAGATGACACGTATTCATT 59.341 34.615 11.95 0.00 33.70 2.57
2009 6328 7.176690 AGGGAAAAAGATGACACGTATTCATTT 59.823 33.333 11.95 5.24 33.70 2.32
2010 6329 7.484959 GGGAAAAAGATGACACGTATTCATTTC 59.515 37.037 11.95 11.58 33.70 2.17
2011 6330 8.020819 GGAAAAAGATGACACGTATTCATTTCA 58.979 33.333 11.95 0.00 33.70 2.69
2012 6331 9.393249 GAAAAAGATGACACGTATTCATTTCAA 57.607 29.630 11.95 0.00 33.70 2.69
2013 6332 9.743057 AAAAAGATGACACGTATTCATTTCAAA 57.257 25.926 11.95 0.00 33.70 2.69
2014 6333 8.728088 AAAGATGACACGTATTCATTTCAAAC 57.272 30.769 11.95 1.01 33.70 2.93
2015 6334 7.672983 AGATGACACGTATTCATTTCAAACT 57.327 32.000 11.95 2.91 33.70 2.66
2016 6335 8.099364 AGATGACACGTATTCATTTCAAACTT 57.901 30.769 11.95 0.00 33.70 2.66
2017 6336 8.230486 AGATGACACGTATTCATTTCAAACTTC 58.770 33.333 11.95 0.00 33.70 3.01
2018 6337 7.252965 TGACACGTATTCATTTCAAACTTCA 57.747 32.000 0.00 0.00 0.00 3.02
2019 6338 7.698628 TGACACGTATTCATTTCAAACTTCAA 58.301 30.769 0.00 0.00 0.00 2.69
2020 6339 8.184848 TGACACGTATTCATTTCAAACTTCAAA 58.815 29.630 0.00 0.00 0.00 2.69
2021 6340 8.335256 ACACGTATTCATTTCAAACTTCAAAC 57.665 30.769 0.00 0.00 0.00 2.93
2022 6341 8.188139 ACACGTATTCATTTCAAACTTCAAACT 58.812 29.630 0.00 0.00 0.00 2.66
2023 6342 9.658475 CACGTATTCATTTCAAACTTCAAACTA 57.342 29.630 0.00 0.00 0.00 2.24
2030 6349 8.296713 TCATTTCAAACTTCAAACTATACCTGC 58.703 33.333 0.00 0.00 0.00 4.85
2031 6350 7.575414 TTTCAAACTTCAAACTATACCTGCA 57.425 32.000 0.00 0.00 0.00 4.41
2032 6351 6.801539 TCAAACTTCAAACTATACCTGCAG 57.198 37.500 6.78 6.78 0.00 4.41
2033 6352 6.296026 TCAAACTTCAAACTATACCTGCAGT 58.704 36.000 13.81 3.45 0.00 4.40
2034 6353 7.446769 TCAAACTTCAAACTATACCTGCAGTA 58.553 34.615 13.81 5.74 34.76 2.74
2035 6354 7.602644 TCAAACTTCAAACTATACCTGCAGTAG 59.397 37.037 13.81 10.45 33.42 2.57
2036 6355 6.607004 ACTTCAAACTATACCTGCAGTAGT 57.393 37.500 13.81 11.12 33.42 2.73
2037 6356 6.398918 ACTTCAAACTATACCTGCAGTAGTG 58.601 40.000 13.81 3.90 33.42 2.74
2056 6375 7.012704 CAGTAGTGCATAAATCCTATTTGCAGT 59.987 37.037 8.41 8.41 45.90 4.40
2088 6407 5.870978 GCATGAACCTTGCAATACTGAAAAT 59.129 36.000 0.00 0.00 39.90 1.82
2290 6609 3.998913 TTGGTCATGAGTAGCCATTCA 57.001 42.857 0.00 0.00 0.00 2.57
2307 6626 4.154737 CCATTCATGTCAAGTGATCGTTGT 59.845 41.667 7.33 0.00 0.00 3.32
2372 6691 3.437049 AGAACATCCTTTAAGAGCGTTGC 59.563 43.478 0.00 0.00 0.00 4.17
2386 6705 1.129811 GCGTTGCAACCCTACATGTAC 59.870 52.381 23.42 0.00 0.00 2.90
2389 6708 2.373540 TGCAACCCTACATGTACGTC 57.626 50.000 0.08 0.00 0.00 4.34
2431 6750 5.734720 ACTGGCCATATCCTAATGTTATCG 58.265 41.667 5.51 0.00 0.00 2.92
2444 6763 6.312426 CCTAATGTTATCGGATGCAAGATCTC 59.688 42.308 0.00 0.00 0.00 2.75
2459 6778 2.012673 GATCTCGCAATCACCAGCTTT 58.987 47.619 0.00 0.00 0.00 3.51
2513 6834 5.743026 TTTCTCAGTGACAATTAAACGCA 57.257 34.783 0.00 0.00 0.00 5.24
2567 6888 4.225942 ACCATGAGCTTCAATCTTACCTGA 59.774 41.667 0.00 0.00 0.00 3.86
2614 6935 0.242555 TTTTTCGCCATTTCGAGCCC 59.757 50.000 0.00 0.00 39.82 5.19
2645 6966 4.753516 TTTAATCTCTTGCAGGGATCGA 57.246 40.909 0.00 0.00 0.00 3.59
2788 7111 1.959042 ATATGCAGTGCTTCTTCCCG 58.041 50.000 17.60 0.00 0.00 5.14
2880 7203 6.432403 AATTTTCATACCTTTTCCCAGCAA 57.568 33.333 0.00 0.00 0.00 3.91
2916 7239 8.709386 CAGTAGTGTTTTCTTCTGCAGTATAT 57.291 34.615 14.67 0.00 0.00 0.86
2917 7240 9.803315 CAGTAGTGTTTTCTTCTGCAGTATATA 57.197 33.333 14.67 0.00 0.00 0.86
2936 7259 9.035890 AGTATATATGTAATAACAGAGCTGCCA 57.964 33.333 0.00 0.00 39.49 4.92
2989 7312 7.657354 AGCAATATGTTTCAGCGATGAATAGTA 59.343 33.333 17.94 10.26 0.00 1.82
2990 7313 7.742089 GCAATATGTTTCAGCGATGAATAGTAC 59.258 37.037 17.94 12.63 0.00 2.73
2991 7314 8.982685 CAATATGTTTCAGCGATGAATAGTACT 58.017 33.333 17.94 0.00 0.00 2.73
3063 7387 1.870167 GCCGCCGATAAGAAGAAGGAG 60.870 57.143 0.00 0.00 0.00 3.69
3135 7459 5.243283 AGTGACCTTACAACGTTAGTGATCT 59.757 40.000 0.00 0.00 0.00 2.75
3145 7469 3.262420 CGTTAGTGATCTTTCCACCTGG 58.738 50.000 0.00 0.00 35.23 4.45
3151 7475 2.041485 TGATCTTTCCACCTGGCAATGA 59.959 45.455 0.00 0.00 34.44 2.57
3158 7482 1.396653 CACCTGGCAATGATCTTCCC 58.603 55.000 0.00 0.00 0.00 3.97
3222 7546 6.844696 TGTCACTTATCTCTGTTGTTTGTC 57.155 37.500 0.00 0.00 0.00 3.18
3252 7576 3.760684 GCACAGATTTCAGGGATGAGTTT 59.239 43.478 0.00 0.00 0.00 2.66
3315 7639 3.000724 GCATGTTCATAGACTCGTGCTTC 59.999 47.826 0.00 0.00 0.00 3.86
3324 7648 1.372251 CTCGTGCTTCGCTCACTGT 60.372 57.895 0.00 0.00 39.67 3.55
3339 7663 1.067295 ACTGTCAATCTGGAGCCCAA 58.933 50.000 0.00 0.00 30.80 4.12
3358 7682 1.080093 GACTCGTGGAATGCCGACA 60.080 57.895 0.00 0.00 36.79 4.35
3401 7725 4.530710 TGGTACGTCTAGCAGTTTTGAT 57.469 40.909 0.00 0.00 0.00 2.57
3453 7777 8.751335 TCAGTTTCGAACAATTTTAAATCAAGC 58.249 29.630 0.00 0.00 0.00 4.01
3461 7785 7.725610 ACAATTTTAAATCAAGCGAGATTCG 57.274 32.000 7.06 0.00 43.89 3.34
3607 7933 2.192175 CCCGTATCCCTGCAACCC 59.808 66.667 0.00 0.00 0.00 4.11
3819 8146 8.792830 TGCTTACTGCTACTGAGAATAAAATT 57.207 30.769 0.00 0.00 43.37 1.82
3877 11411 8.117813 TGGTTATTTAGAATTGACAGGAAACC 57.882 34.615 0.00 0.00 33.69 3.27
3894 11428 9.914834 ACAGGAAACCATACTTGCTATTTATTA 57.085 29.630 0.00 0.00 0.00 0.98
3922 11456 7.483307 TCAGAAAACCAGATCTTTCAAAACTG 58.517 34.615 7.45 6.08 34.60 3.16
3933 11467 4.451096 TCTTTCAAAACTGATAGTCACGGC 59.549 41.667 0.00 0.00 0.00 5.68
3939 11473 0.465705 CTGATAGTCACGGCCCACAT 59.534 55.000 0.00 0.00 0.00 3.21
3956 11490 4.201980 CCCACATGTCATTAGCACATCAAG 60.202 45.833 0.00 0.00 31.83 3.02
4039 11573 9.298250 ACTAGTAGATGTTAGTTTTCTGAGACA 57.702 33.333 3.59 0.00 0.00 3.41
4040 11574 9.781834 CTAGTAGATGTTAGTTTTCTGAGACAG 57.218 37.037 0.00 0.00 0.00 3.51
4042 11576 8.643324 AGTAGATGTTAGTTTTCTGAGACAGTT 58.357 33.333 0.00 0.00 32.61 3.16
4043 11577 9.909644 GTAGATGTTAGTTTTCTGAGACAGTTA 57.090 33.333 0.00 0.00 32.61 2.24
4057 11591 9.569167 TCTGAGACAGTTATAGAAAATTGTACG 57.431 33.333 0.00 0.00 30.40 3.67
4058 11592 8.697846 TGAGACAGTTATAGAAAATTGTACGG 57.302 34.615 0.00 0.00 30.40 4.02
4060 11594 9.362539 GAGACAGTTATAGAAAATTGTACGGAA 57.637 33.333 0.00 0.00 30.40 4.30
4071 11605 9.503399 AGAAAATTGTACGGAATAGTTCTCTTT 57.497 29.630 0.00 0.00 0.00 2.52
4073 11607 9.893305 AAAATTGTACGGAATAGTTCTCTTTTG 57.107 29.630 0.00 0.00 0.00 2.44
4076 11610 5.929992 TGTACGGAATAGTTCTCTTTTGTGG 59.070 40.000 0.00 0.00 0.00 4.17
4077 11611 4.324267 ACGGAATAGTTCTCTTTTGTGGG 58.676 43.478 0.00 0.00 0.00 4.61
4078 11612 3.689649 CGGAATAGTTCTCTTTTGTGGGG 59.310 47.826 0.00 0.00 0.00 4.96
4079 11613 4.564821 CGGAATAGTTCTCTTTTGTGGGGA 60.565 45.833 0.00 0.00 0.00 4.81
4080 11614 5.321927 GGAATAGTTCTCTTTTGTGGGGAA 58.678 41.667 0.00 0.00 0.00 3.97
4081 11615 5.773176 GGAATAGTTCTCTTTTGTGGGGAAA 59.227 40.000 0.00 0.00 0.00 3.13
4082 11616 6.266786 GGAATAGTTCTCTTTTGTGGGGAAAA 59.733 38.462 0.00 0.00 0.00 2.29
4083 11617 7.039011 GGAATAGTTCTCTTTTGTGGGGAAAAT 60.039 37.037 0.00 0.00 0.00 1.82
4084 11618 8.950007 AATAGTTCTCTTTTGTGGGGAAAATA 57.050 30.769 0.00 0.00 0.00 1.40
4086 11620 7.290110 AGTTCTCTTTTGTGGGGAAAATAAG 57.710 36.000 0.00 0.00 0.00 1.73
4087 11621 7.066781 AGTTCTCTTTTGTGGGGAAAATAAGA 58.933 34.615 0.00 0.00 0.00 2.10
4088 11622 7.730332 AGTTCTCTTTTGTGGGGAAAATAAGAT 59.270 33.333 0.00 0.00 0.00 2.40
4089 11623 7.703058 TCTCTTTTGTGGGGAAAATAAGATC 57.297 36.000 0.00 0.00 0.00 2.75
4091 11625 8.611257 TCTCTTTTGTGGGGAAAATAAGATCTA 58.389 33.333 0.00 0.00 0.00 1.98
4093 11627 9.243105 TCTTTTGTGGGGAAAATAAGATCTAAG 57.757 33.333 0.00 0.00 0.00 2.18
4095 11629 8.575649 TTTGTGGGGAAAATAAGATCTAAGAC 57.424 34.615 0.00 0.00 0.00 3.01
4096 11630 6.346096 TGTGGGGAAAATAAGATCTAAGACG 58.654 40.000 0.00 0.00 0.00 4.18
4097 11631 6.070424 TGTGGGGAAAATAAGATCTAAGACGT 60.070 38.462 0.00 0.00 0.00 4.34
4098 11632 6.822170 GTGGGGAAAATAAGATCTAAGACGTT 59.178 38.462 0.00 0.00 0.00 3.99
4100 11634 7.886446 TGGGGAAAATAAGATCTAAGACGTTTT 59.114 33.333 0.00 0.00 0.00 2.43
4101 11635 9.387257 GGGGAAAATAAGATCTAAGACGTTTTA 57.613 33.333 0.00 0.00 0.00 1.52
4116 12059 3.285745 CGTTTTACGGTGAGAAACAAGC 58.714 45.455 13.27 0.00 38.08 4.01
4119 12062 2.512485 TACGGTGAGAAACAAGCGAA 57.488 45.000 0.92 0.00 40.35 4.70
4121 12064 3.034721 ACGGTGAGAAACAAGCGAATA 57.965 42.857 0.92 0.00 40.35 1.75
4125 12068 4.624024 CGGTGAGAAACAAGCGAATACTTA 59.376 41.667 0.00 0.00 39.55 2.24
4129 12072 7.174082 GTGAGAAACAAGCGAATACTTATGTC 58.826 38.462 0.00 0.00 0.00 3.06
4156 12100 9.918630 GTTTAAATATACGAGGGCATCTTAGTA 57.081 33.333 0.00 0.00 0.00 1.82
4164 12108 7.964604 ACGAGGGCATCTTAGTATAAAAATC 57.035 36.000 0.00 0.00 0.00 2.17
4165 12109 7.506114 ACGAGGGCATCTTAGTATAAAAATCA 58.494 34.615 0.00 0.00 0.00 2.57
4280 12227 9.685828 TTTGAAATAAACGGAATTACCTTCTTG 57.314 29.630 0.00 0.00 36.31 3.02
4288 12235 9.855021 AAACGGAATTACCTTCTTGAAAATATG 57.145 29.630 0.00 0.00 36.31 1.78
4290 12237 9.238368 ACGGAATTACCTTCTTGAAAATATGAA 57.762 29.630 0.00 0.00 36.31 2.57
4291 12238 9.503427 CGGAATTACCTTCTTGAAAATATGAAC 57.497 33.333 0.00 0.00 36.31 3.18
4350 12326 9.515020 GATCGCCTTTTGAAATAATTGAATACA 57.485 29.630 0.00 0.00 0.00 2.29
4506 12487 8.087982 ACACTAATTTCAGATGTACAGTTGTG 57.912 34.615 0.33 0.00 0.00 3.33
4507 12488 7.931407 ACACTAATTTCAGATGTACAGTTGTGA 59.069 33.333 0.33 0.00 0.00 3.58
4515 12496 8.173542 TCAGATGTACAGTTGTGAAGTTACTA 57.826 34.615 0.33 0.00 0.00 1.82
4595 12576 8.511604 AGAAATAGTTACTGAAATCACCCATG 57.488 34.615 0.00 0.00 0.00 3.66
4596 12577 8.109634 AGAAATAGTTACTGAAATCACCCATGT 58.890 33.333 0.00 0.00 0.00 3.21
4597 12578 9.391006 GAAATAGTTACTGAAATCACCCATGTA 57.609 33.333 0.00 0.00 0.00 2.29
4598 12579 9.920946 AAATAGTTACTGAAATCACCCATGTAT 57.079 29.630 0.00 0.00 0.00 2.29
4599 12580 8.908786 ATAGTTACTGAAATCACCCATGTATG 57.091 34.615 0.00 0.00 0.00 2.39
4600 12581 6.721318 AGTTACTGAAATCACCCATGTATGT 58.279 36.000 0.00 0.00 0.00 2.29
4601 12582 7.175104 AGTTACTGAAATCACCCATGTATGTT 58.825 34.615 0.00 0.00 0.00 2.71
4602 12583 7.669722 AGTTACTGAAATCACCCATGTATGTTT 59.330 33.333 0.00 0.00 0.00 2.83
4603 12584 6.916360 ACTGAAATCACCCATGTATGTTTT 57.084 33.333 0.00 0.00 0.00 2.43
4604 12585 7.301868 ACTGAAATCACCCATGTATGTTTTT 57.698 32.000 0.00 0.00 0.00 1.94
4605 12586 7.378181 ACTGAAATCACCCATGTATGTTTTTC 58.622 34.615 0.00 5.22 0.00 2.29
4606 12587 7.015098 ACTGAAATCACCCATGTATGTTTTTCA 59.985 33.333 16.72 16.72 32.92 2.69
4607 12588 7.730084 TGAAATCACCCATGTATGTTTTTCAA 58.270 30.769 16.05 7.69 31.95 2.69
4608 12589 8.206867 TGAAATCACCCATGTATGTTTTTCAAA 58.793 29.630 16.05 4.49 31.95 2.69
4609 12590 9.218440 GAAATCACCCATGTATGTTTTTCAAAT 57.782 29.630 13.45 0.00 0.00 2.32
4611 12592 9.651913 AATCACCCATGTATGTTTTTCAAATAC 57.348 29.630 0.00 0.00 0.00 1.89
4612 12593 8.415950 TCACCCATGTATGTTTTTCAAATACT 57.584 30.769 0.00 0.00 0.00 2.12
4613 12594 8.865090 TCACCCATGTATGTTTTTCAAATACTT 58.135 29.630 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.575576 CGACGGACGTCTCCTTCAGT 61.576 60.000 20.75 4.59 42.54 3.41
1 2 1.134901 CGACGGACGTCTCCTTCAG 59.865 63.158 20.75 1.84 42.54 3.02
2 3 2.330372 CCGACGGACGTCTCCTTCA 61.330 63.158 20.75 0.00 42.54 3.02
3 4 2.037136 TCCGACGGACGTCTCCTTC 61.037 63.158 13.88 2.50 42.54 3.46
4 5 2.033141 TCCGACGGACGTCTCCTT 59.967 61.111 13.88 0.00 42.54 3.36
26 27 1.600638 GGAATCGTCCGGAAACCCT 59.399 57.895 5.23 0.00 33.05 4.34
37 38 2.181021 GGTCTCACGCGGAATCGT 59.819 61.111 12.47 0.00 44.35 3.73
38 39 2.582498 GGGTCTCACGCGGAATCG 60.582 66.667 12.47 0.00 39.81 3.34
46 47 2.102357 CGACGATGGGGTCTCACG 59.898 66.667 0.00 0.00 34.75 4.35
157 159 2.467566 TCCAGACGGGCTTCTTAAAC 57.532 50.000 0.00 0.00 36.21 2.01
161 163 1.517832 CGATCCAGACGGGCTTCTT 59.482 57.895 0.00 0.00 36.21 2.52
165 167 2.257409 AAATGCGATCCAGACGGGCT 62.257 55.000 0.00 0.00 36.21 5.19
173 175 1.083489 GGTCACGAAAATGCGATCCA 58.917 50.000 0.00 0.00 34.83 3.41
180 182 1.194547 CACTGACCGGTCACGAAAATG 59.805 52.381 33.23 22.70 44.60 2.32
216 218 1.230324 AAAGCAGTCTCAAACGCCTC 58.770 50.000 0.00 0.00 0.00 4.70
217 219 1.680338 AAAAGCAGTCTCAAACGCCT 58.320 45.000 0.00 0.00 0.00 5.52
224 226 9.948818 TGAGAAAGGCTTGTAAAAGCAGTCTCA 62.949 40.741 27.14 27.14 45.50 3.27
232 234 7.875971 ACAACTATGAGAAAGGCTTGTAAAAG 58.124 34.615 0.00 0.00 0.00 2.27
236 238 7.272978 GGATACAACTATGAGAAAGGCTTGTA 58.727 38.462 0.00 0.00 0.00 2.41
237 239 6.116126 GGATACAACTATGAGAAAGGCTTGT 58.884 40.000 0.00 0.00 0.00 3.16
238 240 6.610741 GGATACAACTATGAGAAAGGCTTG 57.389 41.667 0.00 0.00 0.00 4.01
280 306 4.128925 TGTTATGCTTTGGTGCAAAACA 57.871 36.364 0.00 0.00 46.61 2.83
295 321 1.290203 AACTCGGAGCGCATGTTATG 58.710 50.000 11.47 0.00 0.00 1.90
310 1437 0.235926 GCTCCGCAGAACACAAACTC 59.764 55.000 0.00 0.00 0.00 3.01
359 1486 1.367471 CTGGCGAACACCACTGAGA 59.633 57.895 0.00 0.00 35.33 3.27
403 1530 1.324736 GCGAAGTAGCATCCAAACGAG 59.675 52.381 0.00 0.00 37.05 4.18
462 1591 1.796151 CATCACGGGCACACATGAC 59.204 57.895 0.00 0.00 0.00 3.06
637 1854 0.835941 CTCCTCTGCATGGTAAGCCT 59.164 55.000 0.00 0.00 35.27 4.58
666 1887 2.068837 AAATGCGCAACTGTGGAATG 57.931 45.000 17.11 0.00 0.00 2.67
735 1961 5.913534 AGCAAGGTATATATGGATGGCCTAT 59.086 40.000 3.32 0.00 34.31 2.57
736 1962 5.288687 AGCAAGGTATATATGGATGGCCTA 58.711 41.667 3.32 0.00 34.31 3.93
826 2057 1.457303 GGAGCGACATAAATAGCAGCG 59.543 52.381 0.00 0.00 0.00 5.18
845 2076 4.473520 CGTAGCTGGCCCTGGTGG 62.474 72.222 0.00 0.00 37.09 4.61
846 2077 4.473520 CCGTAGCTGGCCCTGGTG 62.474 72.222 0.00 0.00 0.00 4.17
848 2079 4.473520 CACCGTAGCTGGCCCTGG 62.474 72.222 0.00 0.00 0.00 4.45
1152 2424 0.244450 AATGTCATGGTGGCGCAAAG 59.756 50.000 10.83 0.00 0.00 2.77
1176 2452 2.285220 CCACGGTCGAATAGCAAGAATG 59.715 50.000 0.00 0.00 0.00 2.67
1184 2460 5.556470 CAAATGTTAACCACGGTCGAATAG 58.444 41.667 2.48 0.00 0.00 1.73
1186 2462 3.365565 GCAAATGTTAACCACGGTCGAAT 60.366 43.478 2.48 0.00 0.00 3.34
1187 2463 2.031857 GCAAATGTTAACCACGGTCGAA 60.032 45.455 2.48 0.00 0.00 3.71
1191 2467 2.034053 CACAGCAAATGTTAACCACGGT 59.966 45.455 2.48 0.00 41.41 4.83
1194 2470 2.794350 GTGCACAGCAAATGTTAACCAC 59.206 45.455 13.17 0.00 41.41 4.16
1215 2491 4.101448 CAGGAGCCGACCAAGGGG 62.101 72.222 0.00 0.00 41.29 4.79
1216 2492 4.101448 CCAGGAGCCGACCAAGGG 62.101 72.222 0.00 0.00 0.00 3.95
1217 2493 4.101448 CCCAGGAGCCGACCAAGG 62.101 72.222 0.00 0.00 0.00 3.61
1218 2494 4.785453 GCCCAGGAGCCGACCAAG 62.785 72.222 0.00 0.00 0.00 3.61
1376 2656 6.903419 AGAGATCGTTTCATTTCCAAAAGAC 58.097 36.000 0.00 0.00 0.00 3.01
1522 5821 1.704007 GCTGGCTGCCTCCTAGGATT 61.704 60.000 21.03 0.00 37.67 3.01
1531 5830 0.822164 GATTGAATTGCTGGCTGCCT 59.178 50.000 21.03 0.00 42.00 4.75
1543 5842 2.978156 ATGCCATACCGGGATTGAAT 57.022 45.000 6.32 0.00 45.07 2.57
1571 5870 2.361992 TGCATGAGGGCAAGGCAG 60.362 61.111 0.00 0.00 41.65 4.85
1603 5903 4.155826 CCGCCACATTGATCTGTTTTAGAA 59.844 41.667 0.00 0.00 39.30 2.10
1626 5926 8.090301 TTCAACAAGAAAATCGCAAAAGGTGC 62.090 38.462 0.00 0.00 40.81 5.01
1635 5935 3.920412 GGGTGATTCAACAAGAAAATCGC 59.080 43.478 3.73 0.00 40.22 4.58
1738 6038 3.248024 ACATACAGGGTCCACTTCTTCA 58.752 45.455 0.00 0.00 0.00 3.02
1751 6051 3.417069 TCCAAGTCCACAACATACAGG 57.583 47.619 0.00 0.00 0.00 4.00
1761 6061 4.989279 AATGCATACAATCCAAGTCCAC 57.011 40.909 0.00 0.00 0.00 4.02
1775 6075 8.033626 TGTCTTGCACATAAATGAAAATGCATA 58.966 29.630 0.00 0.00 42.23 3.14
1920 6227 5.165961 AGTTACCAGCAGTGAACATACAT 57.834 39.130 0.00 0.00 0.00 2.29
1928 6235 6.791867 AATGATACTAGTTACCAGCAGTGA 57.208 37.500 0.00 0.00 0.00 3.41
1960 6279 1.025812 AAACCGGCATCACGTCAAAA 58.974 45.000 0.00 0.00 0.00 2.44
1961 6280 1.025812 AAAACCGGCATCACGTCAAA 58.974 45.000 0.00 0.00 0.00 2.69
1962 6281 1.880271 TAAAACCGGCATCACGTCAA 58.120 45.000 0.00 0.00 0.00 3.18
1963 6282 2.102070 ATAAAACCGGCATCACGTCA 57.898 45.000 0.00 0.00 0.00 4.35
1964 6283 2.542595 CCTATAAAACCGGCATCACGTC 59.457 50.000 0.00 0.00 0.00 4.34
1966 6285 1.871039 CCCTATAAAACCGGCATCACG 59.129 52.381 0.00 0.00 0.00 4.35
1967 6286 3.202829 TCCCTATAAAACCGGCATCAC 57.797 47.619 0.00 0.00 0.00 3.06
1968 6287 3.935818 TTCCCTATAAAACCGGCATCA 57.064 42.857 0.00 0.00 0.00 3.07
1970 6289 5.265989 TCTTTTTCCCTATAAAACCGGCAT 58.734 37.500 0.00 0.00 0.00 4.40
1972 6291 5.358725 TCATCTTTTTCCCTATAAAACCGGC 59.641 40.000 0.00 0.00 0.00 6.13
1973 6292 6.376018 TGTCATCTTTTTCCCTATAAAACCGG 59.624 38.462 0.00 0.00 0.00 5.28
1975 6294 7.094506 ACGTGTCATCTTTTTCCCTATAAAACC 60.095 37.037 0.00 0.00 0.00 3.27
1976 6295 7.813645 ACGTGTCATCTTTTTCCCTATAAAAC 58.186 34.615 0.00 0.00 0.00 2.43
1977 6296 7.989416 ACGTGTCATCTTTTTCCCTATAAAA 57.011 32.000 0.00 0.00 0.00 1.52
1980 6299 8.479689 TGAATACGTGTCATCTTTTTCCCTATA 58.520 33.333 0.00 0.00 0.00 1.31
1981 6300 7.335627 TGAATACGTGTCATCTTTTTCCCTAT 58.664 34.615 0.00 0.00 0.00 2.57
1982 6301 6.703319 TGAATACGTGTCATCTTTTTCCCTA 58.297 36.000 0.00 0.00 0.00 3.53
1983 6302 5.556915 TGAATACGTGTCATCTTTTTCCCT 58.443 37.500 0.00 0.00 0.00 4.20
1984 6303 5.873179 TGAATACGTGTCATCTTTTTCCC 57.127 39.130 0.00 0.00 0.00 3.97
1986 6305 8.948853 TGAAATGAATACGTGTCATCTTTTTC 57.051 30.769 14.69 14.65 34.60 2.29
1988 6307 9.180678 GTTTGAAATGAATACGTGTCATCTTTT 57.819 29.630 14.69 7.14 34.60 2.27
1990 6309 8.099364 AGTTTGAAATGAATACGTGTCATCTT 57.901 30.769 14.69 11.56 34.60 2.40
1991 6310 7.672983 AGTTTGAAATGAATACGTGTCATCT 57.327 32.000 14.69 3.77 34.60 2.90
1992 6311 8.015087 TGAAGTTTGAAATGAATACGTGTCATC 58.985 33.333 14.69 7.18 34.60 2.92
1993 6312 7.870826 TGAAGTTTGAAATGAATACGTGTCAT 58.129 30.769 9.97 9.97 37.31 3.06
1994 6313 7.252965 TGAAGTTTGAAATGAATACGTGTCA 57.747 32.000 0.00 1.65 0.00 3.58
1995 6314 8.469125 GTTTGAAGTTTGAAATGAATACGTGTC 58.531 33.333 0.00 0.00 0.00 3.67
1996 6315 8.188139 AGTTTGAAGTTTGAAATGAATACGTGT 58.812 29.630 0.00 0.00 0.00 4.49
1997 6316 8.560576 AGTTTGAAGTTTGAAATGAATACGTG 57.439 30.769 0.00 0.00 0.00 4.49
2004 6323 8.296713 GCAGGTATAGTTTGAAGTTTGAAATGA 58.703 33.333 0.00 0.00 0.00 2.57
2005 6324 8.081633 TGCAGGTATAGTTTGAAGTTTGAAATG 58.918 33.333 0.00 0.00 0.00 2.32
2006 6325 8.177119 TGCAGGTATAGTTTGAAGTTTGAAAT 57.823 30.769 0.00 0.00 0.00 2.17
2007 6326 7.284489 ACTGCAGGTATAGTTTGAAGTTTGAAA 59.716 33.333 19.93 0.00 25.70 2.69
2008 6327 6.770785 ACTGCAGGTATAGTTTGAAGTTTGAA 59.229 34.615 19.93 0.00 25.70 2.69
2009 6328 6.296026 ACTGCAGGTATAGTTTGAAGTTTGA 58.704 36.000 19.93 0.00 25.70 2.69
2010 6329 6.560253 ACTGCAGGTATAGTTTGAAGTTTG 57.440 37.500 19.93 0.00 25.70 2.93
2011 6330 7.387948 CACTACTGCAGGTATAGTTTGAAGTTT 59.612 37.037 19.93 0.00 32.94 2.66
2012 6331 6.874134 CACTACTGCAGGTATAGTTTGAAGTT 59.126 38.462 19.93 0.00 32.94 2.66
2013 6332 6.398918 CACTACTGCAGGTATAGTTTGAAGT 58.601 40.000 19.93 0.00 35.02 3.01
2014 6333 5.292101 GCACTACTGCAGGTATAGTTTGAAG 59.708 44.000 19.93 5.90 43.62 3.02
2015 6334 5.175859 GCACTACTGCAGGTATAGTTTGAA 58.824 41.667 19.93 0.00 43.62 2.69
2016 6335 4.755411 GCACTACTGCAGGTATAGTTTGA 58.245 43.478 19.93 0.00 43.62 2.69
2029 6348 6.145535 GCAAATAGGATTTATGCACTACTGC 58.854 40.000 0.00 0.00 44.52 4.40
2030 6349 7.012704 ACTGCAAATAGGATTTATGCACTACTG 59.987 37.037 0.00 0.00 41.67 2.74
2031 6350 7.056635 ACTGCAAATAGGATTTATGCACTACT 58.943 34.615 0.00 0.00 41.67 2.57
2032 6351 7.264373 ACTGCAAATAGGATTTATGCACTAC 57.736 36.000 0.00 0.00 41.67 2.73
2033 6352 7.775093 AGAACTGCAAATAGGATTTATGCACTA 59.225 33.333 0.00 0.00 41.67 2.74
2034 6353 6.604795 AGAACTGCAAATAGGATTTATGCACT 59.395 34.615 0.00 0.00 41.67 4.40
2035 6354 6.799512 AGAACTGCAAATAGGATTTATGCAC 58.200 36.000 0.00 0.00 41.67 4.57
2036 6355 7.340232 AGAAGAACTGCAAATAGGATTTATGCA 59.660 33.333 0.00 0.00 44.07 3.96
2037 6356 7.710896 AGAAGAACTGCAAATAGGATTTATGC 58.289 34.615 0.00 0.00 37.52 3.14
2038 6357 9.512435 CAAGAAGAACTGCAAATAGGATTTATG 57.488 33.333 0.00 0.00 0.00 1.90
2039 6358 8.193438 GCAAGAAGAACTGCAAATAGGATTTAT 58.807 33.333 0.00 0.00 0.00 1.40
2040 6359 7.176515 TGCAAGAAGAACTGCAAATAGGATTTA 59.823 33.333 0.00 0.00 32.78 1.40
2043 6362 5.012239 TGCAAGAAGAACTGCAAATAGGAT 58.988 37.500 0.00 0.00 32.78 3.24
2047 6366 5.963176 TCATGCAAGAAGAACTGCAAATA 57.037 34.783 0.29 0.00 36.70 1.40
2056 6375 3.648339 GCAAGGTTCATGCAAGAAGAA 57.352 42.857 4.28 0.00 43.29 2.52
2077 6396 4.523943 TGCAGCACCTCAATTTTCAGTATT 59.476 37.500 0.00 0.00 0.00 1.89
2088 6407 2.203470 TGATGAATGCAGCACCTCAA 57.797 45.000 12.02 0.00 35.11 3.02
2158 6477 7.596248 GTCTTTGAATTTGTCACAATGCAGTAT 59.404 33.333 0.00 0.00 35.39 2.12
2290 6609 3.026630 ACGACAACGATCACTTGACAT 57.973 42.857 7.04 0.00 42.66 3.06
2307 6626 1.478916 TCCGTCCTGCAATGATAACGA 59.521 47.619 0.00 0.00 32.17 3.85
2372 6691 2.163010 AGACGACGTACATGTAGGGTTG 59.837 50.000 24.98 20.70 0.00 3.77
2386 6705 2.225963 ACTGTAAGGTCAGAAGACGACG 59.774 50.000 0.00 0.00 45.92 5.12
2389 6708 4.379603 CCAGTACTGTAAGGTCAGAAGACG 60.380 50.000 21.18 0.00 45.92 4.18
2444 6763 5.820131 TGAATTATAAAGCTGGTGATTGCG 58.180 37.500 0.00 0.00 0.00 4.85
2485 6806 7.323656 CGTTTAATTGTCACTGAGAAAATGGTC 59.676 37.037 0.00 0.00 34.35 4.02
2513 6834 5.010314 GGAAGAACCGGTGAAAATAAAAGGT 59.990 40.000 8.52 0.00 0.00 3.50
2593 6914 2.606108 GGCTCGAAATGGCGAAAAATT 58.394 42.857 0.00 0.00 40.13 1.82
2614 6935 6.102006 TGCAAGAGATTAAAACGGTTATCG 57.898 37.500 0.00 0.00 45.88 2.92
2645 6966 9.382275 GGTACATGAAGATGGCAAATTTTTAAT 57.618 29.630 0.00 0.00 33.39 1.40
2718 7039 1.320507 CTAGTAGAAGAGCGTCCCCC 58.679 60.000 0.00 0.00 0.00 5.40
2788 7111 0.895100 TTGTTGGGAGGACATGCTGC 60.895 55.000 0.00 0.00 0.00 5.25
2880 7203 2.205022 ACACTACTGCCATTGTGCAT 57.795 45.000 0.00 0.00 41.16 3.96
2916 7239 5.989477 ACTTGGCAGCTCTGTTATTACATA 58.011 37.500 0.00 0.00 32.86 2.29
2917 7240 4.848357 ACTTGGCAGCTCTGTTATTACAT 58.152 39.130 0.00 0.00 32.86 2.29
2918 7241 4.286297 ACTTGGCAGCTCTGTTATTACA 57.714 40.909 0.00 0.00 0.00 2.41
2919 7242 6.737254 TTTACTTGGCAGCTCTGTTATTAC 57.263 37.500 0.00 0.00 0.00 1.89
2920 7243 7.753309 TTTTTACTTGGCAGCTCTGTTATTA 57.247 32.000 0.00 0.00 0.00 0.98
2921 7244 6.648879 TTTTTACTTGGCAGCTCTGTTATT 57.351 33.333 0.00 0.00 0.00 1.40
2957 7280 4.215185 TCGCTGAAACATATTGCTTGAACA 59.785 37.500 0.00 0.00 0.00 3.18
2961 7284 4.912214 TCATCGCTGAAACATATTGCTTG 58.088 39.130 0.00 0.00 0.00 4.01
2968 7291 8.847196 ACTAGTACTATTCATCGCTGAAACATA 58.153 33.333 5.70 0.00 44.29 2.29
2989 7312 0.391263 GGCGCCAGCTTGTTACTAGT 60.391 55.000 24.80 0.00 44.37 2.57
2990 7313 0.108138 AGGCGCCAGCTTGTTACTAG 60.108 55.000 31.54 0.00 44.37 2.57
2991 7314 0.391130 CAGGCGCCAGCTTGTTACTA 60.391 55.000 31.54 0.00 44.30 1.82
3063 7387 0.603439 CAACCTTGCATTTGGCCCAC 60.603 55.000 0.00 0.00 43.89 4.61
3135 7459 2.905415 AGATCATTGCCAGGTGGAAA 57.095 45.000 0.00 0.00 37.09 3.13
3145 7469 2.260844 TCATCCGGGAAGATCATTGC 57.739 50.000 0.00 0.00 0.00 3.56
3151 7475 2.412591 AGTTGGATCATCCGGGAAGAT 58.587 47.619 14.22 14.22 40.17 2.40
3158 7482 4.395854 TGAACATCAAAGTTGGATCATCCG 59.604 41.667 0.00 0.00 40.17 4.18
3222 7546 3.998341 CCCTGAAATCTGTGCCAAAAATG 59.002 43.478 0.00 0.00 0.00 2.32
3252 7576 0.246635 GTTTAGGGAGCGCTGACAGA 59.753 55.000 18.48 0.00 0.00 3.41
3285 7609 6.490381 ACGAGTCTATGAACATGCCTATCTTA 59.510 38.462 0.00 0.00 0.00 2.10
3315 7639 1.638133 CTCCAGATTGACAGTGAGCG 58.362 55.000 0.00 0.00 0.00 5.03
3324 7648 1.556911 GAGTCTTGGGCTCCAGATTGA 59.443 52.381 0.00 0.00 33.81 2.57
3339 7663 1.215647 GTCGGCATTCCACGAGTCT 59.784 57.895 0.00 0.00 40.09 3.24
3358 7682 3.173965 TCTTCTGAATCGAAGGGGAACT 58.826 45.455 12.35 0.00 40.56 3.01
3401 7725 3.572255 GTCAGAAAACTGTTGGGCCAATA 59.428 43.478 23.95 19.38 0.00 1.90
3435 7759 8.306923 CGAATCTCGCTTGATTTAAAATTGTTC 58.693 33.333 0.00 0.00 36.86 3.18
3453 7777 3.163594 GCACATTTTTCACCGAATCTCG 58.836 45.455 0.00 0.00 40.07 4.04
3461 7785 2.131972 GGGTTTCGCACATTTTTCACC 58.868 47.619 0.00 0.00 0.00 4.02
3607 7933 2.743664 TCTTCATTGTCAATGCAGGACG 59.256 45.455 20.56 4.36 38.77 4.79
3819 8146 1.837439 AGTTCACACCACAACTCCTCA 59.163 47.619 0.00 0.00 0.00 3.86
3894 11428 9.317936 GTTTTGAAAGATCTGGTTTTCTGAAAT 57.682 29.630 3.31 0.00 35.02 2.17
3922 11456 0.178068 ACATGTGGGCCGTGACTATC 59.822 55.000 0.00 0.00 34.01 2.08
3933 11467 3.281158 TGATGTGCTAATGACATGTGGG 58.719 45.455 1.15 0.00 34.10 4.61
4014 11548 9.781834 CTGTCTCAGAAAACTAACATCTACTAG 57.218 37.037 0.00 0.00 32.44 2.57
4016 11550 8.184304 ACTGTCTCAGAAAACTAACATCTACT 57.816 34.615 3.70 0.00 35.18 2.57
4017 11551 8.819643 AACTGTCTCAGAAAACTAACATCTAC 57.180 34.615 3.70 0.00 35.18 2.59
4031 11565 9.569167 CGTACAATTTTCTATAACTGTCTCAGA 57.431 33.333 3.70 0.00 35.18 3.27
4032 11566 8.808529 CCGTACAATTTTCTATAACTGTCTCAG 58.191 37.037 0.00 0.00 37.52 3.35
4033 11567 8.525316 TCCGTACAATTTTCTATAACTGTCTCA 58.475 33.333 0.00 0.00 0.00 3.27
4034 11568 8.922058 TCCGTACAATTTTCTATAACTGTCTC 57.078 34.615 0.00 0.00 0.00 3.36
4045 11579 9.503399 AAAGAGAACTATTCCGTACAATTTTCT 57.497 29.630 0.00 0.00 0.00 2.52
4047 11581 9.893305 CAAAAGAGAACTATTCCGTACAATTTT 57.107 29.630 0.00 0.00 0.00 1.82
4049 11583 8.504005 CACAAAAGAGAACTATTCCGTACAATT 58.496 33.333 0.00 0.00 0.00 2.32
4050 11584 7.119262 CCACAAAAGAGAACTATTCCGTACAAT 59.881 37.037 0.00 0.00 0.00 2.71
4052 11586 5.929992 CCACAAAAGAGAACTATTCCGTACA 59.070 40.000 0.00 0.00 0.00 2.90
4053 11587 5.350640 CCCACAAAAGAGAACTATTCCGTAC 59.649 44.000 0.00 0.00 0.00 3.67
4055 11589 4.324267 CCCACAAAAGAGAACTATTCCGT 58.676 43.478 0.00 0.00 0.00 4.69
4056 11590 3.689649 CCCCACAAAAGAGAACTATTCCG 59.310 47.826 0.00 0.00 0.00 4.30
4057 11591 4.918588 TCCCCACAAAAGAGAACTATTCC 58.081 43.478 0.00 0.00 0.00 3.01
4058 11592 6.894339 TTTCCCCACAAAAGAGAACTATTC 57.106 37.500 0.00 0.00 0.00 1.75
4060 11594 8.950007 TTATTTTCCCCACAAAAGAGAACTAT 57.050 30.769 0.00 0.00 0.00 2.12
4064 11598 7.950124 AGATCTTATTTTCCCCACAAAAGAGAA 59.050 33.333 0.00 0.00 30.97 2.87
4065 11599 7.470192 AGATCTTATTTTCCCCACAAAAGAGA 58.530 34.615 0.00 0.00 31.37 3.10
4066 11600 7.709149 AGATCTTATTTTCCCCACAAAAGAG 57.291 36.000 0.00 0.00 0.00 2.85
4067 11601 9.243105 CTTAGATCTTATTTTCCCCACAAAAGA 57.757 33.333 0.00 0.00 0.00 2.52
4068 11602 9.243105 TCTTAGATCTTATTTTCCCCACAAAAG 57.757 33.333 0.00 0.00 0.00 2.27
4069 11603 9.020731 GTCTTAGATCTTATTTTCCCCACAAAA 57.979 33.333 0.00 0.00 0.00 2.44
4070 11604 7.335924 CGTCTTAGATCTTATTTTCCCCACAAA 59.664 37.037 0.00 0.00 0.00 2.83
4071 11605 6.821665 CGTCTTAGATCTTATTTTCCCCACAA 59.178 38.462 0.00 0.00 0.00 3.33
4072 11606 6.070424 ACGTCTTAGATCTTATTTTCCCCACA 60.070 38.462 0.00 0.00 0.00 4.17
4073 11607 6.346896 ACGTCTTAGATCTTATTTTCCCCAC 58.653 40.000 0.00 0.00 0.00 4.61
4077 11611 9.897349 CGTAAAACGTCTTAGATCTTATTTTCC 57.103 33.333 0.00 0.00 36.74 3.13
4078 11612 9.897349 CCGTAAAACGTCTTAGATCTTATTTTC 57.103 33.333 0.00 0.00 40.58 2.29
4079 11613 9.428097 ACCGTAAAACGTCTTAGATCTTATTTT 57.572 29.630 0.00 0.00 40.58 1.82
4080 11614 8.866956 CACCGTAAAACGTCTTAGATCTTATTT 58.133 33.333 0.00 0.00 40.58 1.40
4081 11615 8.246180 TCACCGTAAAACGTCTTAGATCTTATT 58.754 33.333 0.00 0.00 40.58 1.40
4082 11616 7.765307 TCACCGTAAAACGTCTTAGATCTTAT 58.235 34.615 0.00 0.00 40.58 1.73
4083 11617 7.119699 TCTCACCGTAAAACGTCTTAGATCTTA 59.880 37.037 0.00 0.00 40.58 2.10
4084 11618 6.017400 TCACCGTAAAACGTCTTAGATCTT 57.983 37.500 0.00 0.00 40.58 2.40
4086 11620 5.634896 TCTCACCGTAAAACGTCTTAGATC 58.365 41.667 0.00 0.00 40.58 2.75
4087 11621 5.633830 TCTCACCGTAAAACGTCTTAGAT 57.366 39.130 0.00 0.00 40.58 1.98
4088 11622 5.437289 TTCTCACCGTAAAACGTCTTAGA 57.563 39.130 0.00 0.00 40.58 2.10
4089 11623 5.459762 TGTTTCTCACCGTAAAACGTCTTAG 59.540 40.000 0.00 0.00 40.58 2.18
4091 11625 4.183101 TGTTTCTCACCGTAAAACGTCTT 58.817 39.130 0.00 0.00 40.58 3.01
4093 11627 4.511734 CTTGTTTCTCACCGTAAAACGTC 58.488 43.478 0.00 0.00 40.58 4.34
4095 11629 3.285745 GCTTGTTTCTCACCGTAAAACG 58.714 45.455 0.00 0.00 42.11 3.60
4096 11630 3.001533 TCGCTTGTTTCTCACCGTAAAAC 59.998 43.478 0.00 0.00 34.30 2.43
4097 11631 3.196463 TCGCTTGTTTCTCACCGTAAAA 58.804 40.909 0.00 0.00 0.00 1.52
4098 11632 2.823984 TCGCTTGTTTCTCACCGTAAA 58.176 42.857 0.00 0.00 0.00 2.01
4100 11634 2.512485 TTCGCTTGTTTCTCACCGTA 57.488 45.000 0.00 0.00 0.00 4.02
4101 11635 1.878953 ATTCGCTTGTTTCTCACCGT 58.121 45.000 0.00 0.00 0.00 4.83
4102 11636 2.993899 AGTATTCGCTTGTTTCTCACCG 59.006 45.455 0.00 0.00 0.00 4.94
4103 11637 6.092259 ACATAAGTATTCGCTTGTTTCTCACC 59.908 38.462 0.00 0.00 0.00 4.02
4104 11638 7.061752 ACATAAGTATTCGCTTGTTTCTCAC 57.938 36.000 0.00 0.00 0.00 3.51
4105 11639 6.034577 CGACATAAGTATTCGCTTGTTTCTCA 59.965 38.462 0.00 0.00 0.00 3.27
4106 11640 6.034683 ACGACATAAGTATTCGCTTGTTTCTC 59.965 38.462 0.00 0.00 36.18 2.87
4108 11642 6.091123 ACGACATAAGTATTCGCTTGTTTC 57.909 37.500 0.00 0.00 36.18 2.78
4109 11643 6.476243 AACGACATAAGTATTCGCTTGTTT 57.524 33.333 0.00 0.00 36.18 2.83
4121 12064 7.383300 GCCCTCGTATATTTAAACGACATAAGT 59.617 37.037 0.00 0.00 42.74 2.24
4125 12068 5.603596 TGCCCTCGTATATTTAAACGACAT 58.396 37.500 0.00 0.00 42.74 3.06
4129 12072 6.780706 AAGATGCCCTCGTATATTTAAACG 57.219 37.500 0.00 0.00 40.40 3.60
4141 12084 7.962964 TGATTTTTATACTAAGATGCCCTCG 57.037 36.000 0.00 0.00 0.00 4.63
4181 12125 8.744652 AGACTAGCATATGTAGCTTACCATTAG 58.255 37.037 4.29 0.00 43.25 1.73
4257 12202 9.902196 TTTCAAGAAGGTAATTCCGTTTATTTC 57.098 29.630 0.00 0.00 41.99 2.17
4265 12212 9.503427 GTTCATATTTTCAAGAAGGTAATTCCG 57.497 33.333 0.00 0.00 41.99 4.30
4308 12283 9.788960 AAAAGGCGATCTTAATTATTTTGAGAC 57.211 29.630 0.00 0.00 34.78 3.36
4309 12284 9.787532 CAAAAGGCGATCTTAATTATTTTGAGA 57.212 29.630 9.49 0.05 38.18 3.27
4310 12285 9.787532 TCAAAAGGCGATCTTAATTATTTTGAG 57.212 29.630 12.16 0.00 39.28 3.02
4474 12454 9.944663 TGTACATCTGAAATTAGTGTTTTCAAC 57.055 29.630 0.00 0.00 41.23 3.18
4481 12462 7.931407 TCACAACTGTACATCTGAAATTAGTGT 59.069 33.333 10.45 0.00 0.00 3.55
4487 12468 7.807977 AACTTCACAACTGTACATCTGAAAT 57.192 32.000 10.45 0.00 0.00 2.17
4488 12469 7.985184 AGTAACTTCACAACTGTACATCTGAAA 59.015 33.333 10.45 4.82 0.00 2.69
4491 12472 8.812147 TTAGTAACTTCACAACTGTACATCTG 57.188 34.615 0.00 0.00 0.00 2.90
4541 12522 3.136009 TCTCTACACGAGTGAAGTCCA 57.864 47.619 10.50 0.00 40.75 4.02
4569 12550 9.613428 CATGGGTGATTTCAGTAACTATTTCTA 57.387 33.333 0.00 0.00 0.00 2.10
4570 12551 8.109634 ACATGGGTGATTTCAGTAACTATTTCT 58.890 33.333 0.00 0.00 0.00 2.52
4571 12552 8.281212 ACATGGGTGATTTCAGTAACTATTTC 57.719 34.615 0.00 0.00 0.00 2.17
4572 12553 9.920946 ATACATGGGTGATTTCAGTAACTATTT 57.079 29.630 0.00 0.00 0.00 1.40
4573 12554 9.342308 CATACATGGGTGATTTCAGTAACTATT 57.658 33.333 0.00 0.00 0.00 1.73
4574 12555 8.494433 ACATACATGGGTGATTTCAGTAACTAT 58.506 33.333 0.00 0.00 0.00 2.12
4575 12556 7.857456 ACATACATGGGTGATTTCAGTAACTA 58.143 34.615 0.00 0.00 0.00 2.24
4576 12557 6.721318 ACATACATGGGTGATTTCAGTAACT 58.279 36.000 0.00 0.00 0.00 2.24
4577 12558 7.391148 AACATACATGGGTGATTTCAGTAAC 57.609 36.000 0.00 0.00 0.00 2.50
4578 12559 8.415950 AAAACATACATGGGTGATTTCAGTAA 57.584 30.769 0.00 0.00 0.00 2.24
4579 12560 8.415950 AAAAACATACATGGGTGATTTCAGTA 57.584 30.769 0.00 0.00 0.00 2.74
4580 12561 6.916360 AAAACATACATGGGTGATTTCAGT 57.084 33.333 0.00 0.00 0.00 3.41
4581 12562 7.377398 TGAAAAACATACATGGGTGATTTCAG 58.623 34.615 20.27 0.00 33.87 3.02
4582 12563 7.295322 TGAAAAACATACATGGGTGATTTCA 57.705 32.000 20.27 20.27 35.05 2.69
4583 12564 8.600449 TTTGAAAAACATACATGGGTGATTTC 57.400 30.769 17.65 17.65 0.00 2.17
4585 12566 9.651913 GTATTTGAAAAACATACATGGGTGATT 57.348 29.630 0.00 0.00 0.00 2.57
4586 12567 9.034800 AGTATTTGAAAAACATACATGGGTGAT 57.965 29.630 0.00 0.00 0.00 3.06
4587 12568 8.415950 AGTATTTGAAAAACATACATGGGTGA 57.584 30.769 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.