Multiple sequence alignment - TraesCS2B01G456500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G456500 chr2B 100.000 4389 0 0 1 4389 651358753 651363141 0.000000e+00 8106.0
1 TraesCS2B01G456500 chr2A 89.465 1908 120 38 1 1881 688623639 688621786 0.000000e+00 2335.0
2 TraesCS2B01G456500 chr2A 90.555 847 55 17 2003 2839 688621695 688620864 0.000000e+00 1098.0
3 TraesCS2B01G456500 chr2A 93.020 702 31 12 3036 3734 688620738 688620052 0.000000e+00 1009.0
4 TraesCS2B01G456500 chr2A 88.928 569 32 10 3822 4388 688620004 688619465 0.000000e+00 673.0
5 TraesCS2B01G456500 chr2A 100.000 36 0 0 2750 2785 688620526 688620491 2.830000e-07 67.6
6 TraesCS2B01G456500 chr2D 93.511 863 45 9 1 855 544880547 544881406 0.000000e+00 1273.0
7 TraesCS2B01G456500 chr2D 86.678 1171 99 39 1707 2839 544882970 544884121 0.000000e+00 1245.0
8 TraesCS2B01G456500 chr2D 89.646 792 40 16 3036 3823 544884247 544885000 0.000000e+00 970.0
9 TraesCS2B01G456500 chr2D 95.362 539 19 4 921 1457 544882007 544882541 0.000000e+00 852.0
10 TraesCS2B01G456500 chr2D 88.616 571 33 11 3819 4387 544885039 544885579 0.000000e+00 665.0
11 TraesCS2B01G456500 chr2D 93.056 144 10 0 1517 1660 544882687 544882830 1.240000e-50 211.0
12 TraesCS2B01G456500 chr2D 97.778 45 1 0 3777 3821 83967040 83967084 1.310000e-10 78.7
13 TraesCS2B01G456500 chrUn 97.414 116 3 0 2926 3041 408698783 408698668 9.630000e-47 198.0
14 TraesCS2B01G456500 chr6A 96.581 117 3 1 2918 3034 600702100 600702215 4.480000e-45 193.0
15 TraesCS2B01G456500 chr6A 95.690 116 5 0 2919 3034 116323139 116323254 2.080000e-43 187.0
16 TraesCS2B01G456500 chr4B 98.182 110 2 0 2927 3036 801216 801325 4.480000e-45 193.0
17 TraesCS2B01G456500 chr3A 97.345 113 3 0 2922 3034 57889061 57888949 4.480000e-45 193.0
18 TraesCS2B01G456500 chr5A 96.522 115 4 0 2920 3034 2407115 2407001 1.610000e-44 191.0
19 TraesCS2B01G456500 chr5A 93.750 48 3 0 3779 3826 548605213 548605166 6.090000e-09 73.1
20 TraesCS2B01G456500 chr1B 96.552 116 2 1 2927 3040 654080415 654080300 1.610000e-44 191.0
21 TraesCS2B01G456500 chr4A 94.309 123 5 2 2915 3037 684053326 684053206 2.080000e-43 187.0
22 TraesCS2B01G456500 chr4A 93.496 123 6 2 2915 3037 684026869 684026749 9.700000e-42 182.0
23 TraesCS2B01G456500 chr1D 96.078 51 0 2 3772 3821 305588264 305588313 1.010000e-11 82.4
24 TraesCS2B01G456500 chr1A 94.444 54 1 2 3768 3821 343398419 343398368 1.010000e-11 82.4
25 TraesCS2B01G456500 chr1A 96.078 51 0 2 3772 3821 384333693 384333742 1.010000e-11 82.4
26 TraesCS2B01G456500 chr1A 97.727 44 1 0 3778 3821 581594149 581594192 4.710000e-10 76.8
27 TraesCS2B01G456500 chr7B 100.000 43 0 0 3779 3821 255075400 255075442 3.640000e-11 80.5
28 TraesCS2B01G456500 chr7A 100.000 41 0 0 3779 3819 332446751 332446791 4.710000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G456500 chr2B 651358753 651363141 4388 False 8106.000000 8106 100.000000 1 4389 1 chr2B.!!$F1 4388
1 TraesCS2B01G456500 chr2A 688619465 688623639 4174 True 1036.520000 2335 92.393600 1 4388 5 chr2A.!!$R1 4387
2 TraesCS2B01G456500 chr2D 544880547 544885579 5032 False 869.333333 1273 91.144833 1 4387 6 chr2D.!!$F2 4386

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
903 1477 0.161870 GAAAAGCTGCGACACGAGTC 59.838 55.0 2.56 2.56 41.46 3.36 F
904 1478 0.529773 AAAAGCTGCGACACGAGTCA 60.530 50.0 13.46 0.00 45.23 3.41 F
1452 2039 1.185618 TGGAGTCGCAGCTAGGTTGT 61.186 55.0 0.00 0.00 0.00 3.32 F
2108 2929 0.322008 CTCCTTTGCCACTCCCACTC 60.322 60.0 0.00 0.00 0.00 3.51 F
3003 3855 0.250467 GCTCAAACCCAGCTGTCTGA 60.250 55.0 13.81 8.34 42.95 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1850 2636 0.168348 GCACTGATGTTGCAGAGCTG 59.832 55.0 0.00 0.0 45.23 4.24 R
1871 2657 0.251341 GTGAAGGGCCATGACAGGTT 60.251 55.0 6.18 0.0 0.00 3.50 R
2984 3836 0.250467 TCAGACAGCTGGGTTTGAGC 60.250 55.0 19.93 0.0 42.53 4.26 R
3174 4026 0.602638 TGACCAGCCACGTCATCAAC 60.603 55.0 0.00 0.0 35.35 3.18 R
4044 4941 0.698238 ACCCAGCTTGCACTCCATTA 59.302 50.0 0.00 0.0 0.00 1.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.256117 ACCAGCCAACTAACAGTCAC 57.744 50.000 0.00 0.00 0.00 3.67
325 327 2.975799 GGCGAAACCGGAGTTGCA 60.976 61.111 9.46 0.00 35.97 4.08
404 406 1.005805 TCCATTGGGTCCCTGATTGTG 59.994 52.381 10.00 0.00 34.93 3.33
618 624 2.895372 CATACGCTTGGGGTCCGC 60.895 66.667 0.00 0.00 0.00 5.54
647 653 6.457159 TTGGGAGTTTTTCCTTGATACCTA 57.543 37.500 0.00 0.00 45.98 3.08
661 667 7.660208 TCCTTGATACCTACAGAAACTGAAAAC 59.340 37.037 5.76 0.00 35.18 2.43
678 684 7.610865 ACTGAAAACTTTCCAGTGAAATTCAA 58.389 30.769 0.00 0.00 39.65 2.69
683 689 1.533625 TCCAGTGAAATTCAAGGGCG 58.466 50.000 13.52 0.00 0.00 6.13
689 695 1.622811 TGAAATTCAAGGGCGCCAAAT 59.377 42.857 30.85 18.17 0.00 2.32
716 728 3.873952 CGAAATTCCCCTTCTGAGACATC 59.126 47.826 0.00 0.00 0.00 3.06
721 733 3.251484 TCCCCTTCTGAGACATCTTGTT 58.749 45.455 0.00 0.00 0.00 2.83
731 743 2.808543 AGACATCTTGTTGAAGTTCCGC 59.191 45.455 0.00 0.00 0.00 5.54
796 808 1.661341 GAGCCATTTCTCGTGATGCT 58.339 50.000 0.00 0.00 0.00 3.79
827 842 7.464178 CGAACTTAGGTTCTGTATGAAATTCCG 60.464 40.741 14.94 0.00 46.84 4.30
891 1465 1.524008 CGCGGGGAAAAGGAAAAGCT 61.524 55.000 0.00 0.00 0.00 3.74
901 1475 0.946221 AGGAAAAGCTGCGACACGAG 60.946 55.000 0.00 0.00 0.00 4.18
903 1477 0.161870 GAAAAGCTGCGACACGAGTC 59.838 55.000 2.56 2.56 41.46 3.36
904 1478 0.529773 AAAAGCTGCGACACGAGTCA 60.530 50.000 13.46 0.00 45.23 3.41
905 1479 1.215655 AAAGCTGCGACACGAGTCAC 61.216 55.000 13.46 3.91 45.23 3.67
906 1480 3.461982 GCTGCGACACGAGTCACG 61.462 66.667 13.46 1.87 45.23 4.35
907 1481 2.251371 CTGCGACACGAGTCACGA 59.749 61.111 13.46 0.00 45.23 4.35
908 1482 2.051614 TGCGACACGAGTCACGAC 60.052 61.111 13.46 0.29 45.23 4.34
909 1483 2.251667 GCGACACGAGTCACGACT 59.748 61.111 13.46 0.00 45.23 4.18
910 1484 2.075489 GCGACACGAGTCACGACTG 61.075 63.158 13.46 0.21 45.23 3.51
979 1553 2.427245 CCCAACTCGATCTCCGGCT 61.427 63.158 0.00 0.00 39.14 5.52
980 1554 1.227089 CCAACTCGATCTCCGGCTG 60.227 63.158 0.00 0.00 39.14 4.85
981 1555 1.880340 CAACTCGATCTCCGGCTGC 60.880 63.158 0.00 0.00 39.14 5.25
1407 1984 1.292541 GGTCCAGGAGTTCGTCACC 59.707 63.158 0.00 0.00 0.00 4.02
1426 2003 4.796231 CCGCCGAGGAACAGGTCG 62.796 72.222 0.00 0.00 45.00 4.79
1430 2007 2.261671 CGAGGAACAGGTCGGTGG 59.738 66.667 0.00 0.00 32.40 4.61
1440 2017 2.567049 GTCGGTGGACTGGAGTCG 59.433 66.667 0.74 0.00 45.65 4.18
1445 2022 2.601666 TGGACTGGAGTCGCAGCT 60.602 61.111 8.13 0.00 45.65 4.24
1446 2023 1.304134 TGGACTGGAGTCGCAGCTA 60.304 57.895 8.13 0.00 45.65 3.32
1452 2039 1.185618 TGGAGTCGCAGCTAGGTTGT 61.186 55.000 0.00 0.00 0.00 3.32
1496 2169 5.480073 TGCTGCTAATAAATTTGGGTTGAGT 59.520 36.000 0.00 0.00 0.00 3.41
1513 2186 5.178809 GGTTGAGTAGCGTCTGTAATTTTGT 59.821 40.000 0.00 0.00 0.00 2.83
1514 2187 6.366877 GGTTGAGTAGCGTCTGTAATTTTGTA 59.633 38.462 0.00 0.00 0.00 2.41
1515 2188 7.064253 GGTTGAGTAGCGTCTGTAATTTTGTAT 59.936 37.037 0.00 0.00 0.00 2.29
1530 2203 5.420725 TTTTGTATCTTCTGCAGGAGCTA 57.579 39.130 17.99 9.49 42.74 3.32
1622 2295 7.594015 TGAGTTTCTGTATGAAGTAAGTTCGAC 59.406 37.037 0.00 0.00 38.09 4.20
1656 2329 4.916041 TGACCATCCAGATTGTTCTTCT 57.084 40.909 0.00 0.00 0.00 2.85
1660 2333 4.080638 ACCATCCAGATTGTTCTTCTCTCC 60.081 45.833 0.00 0.00 0.00 3.71
1662 2335 2.093973 TCCAGATTGTTCTTCTCTCCGC 60.094 50.000 0.00 0.00 0.00 5.54
1663 2336 2.354103 CCAGATTGTTCTTCTCTCCGCA 60.354 50.000 0.00 0.00 0.00 5.69
1669 2342 3.154710 TGTTCTTCTCTCCGCAACTCTA 58.845 45.455 0.00 0.00 0.00 2.43
1690 2363 1.538047 TTGCCCTTCTGCAATCAGTC 58.462 50.000 0.00 0.00 45.77 3.51
1693 2366 1.339438 GCCCTTCTGCAATCAGTCAGA 60.339 52.381 0.00 0.00 41.10 3.27
1707 2380 7.596749 AATCAGTCAGATTGGTTACGTTTAG 57.403 36.000 0.00 0.00 45.11 1.85
1708 2381 6.092955 TCAGTCAGATTGGTTACGTTTAGT 57.907 37.500 0.00 0.00 0.00 2.24
1709 2382 7.218228 TCAGTCAGATTGGTTACGTTTAGTA 57.782 36.000 0.00 0.00 0.00 1.82
1710 2383 7.310664 TCAGTCAGATTGGTTACGTTTAGTAG 58.689 38.462 0.00 0.00 36.56 2.57
1714 2387 8.239998 GTCAGATTGGTTACGTTTAGTAGTACT 58.760 37.037 8.14 8.14 36.56 2.73
1738 2512 4.992381 AATAAGTTCGCACTGTCAGTTC 57.008 40.909 1.67 0.00 31.60 3.01
1740 2514 2.604046 AGTTCGCACTGTCAGTTCTT 57.396 45.000 1.67 0.00 0.00 2.52
1741 2515 2.906354 AGTTCGCACTGTCAGTTCTTT 58.094 42.857 1.67 0.00 0.00 2.52
1744 2518 3.673746 TCGCACTGTCAGTTCTTTTTG 57.326 42.857 1.67 0.00 0.00 2.44
1809 2588 8.419076 TTTCTTCAGTACAAAATGAAAAAGGC 57.581 30.769 0.00 0.00 35.14 4.35
1812 2591 6.872920 TTCAGTACAAAATGAAAAAGGCACT 58.127 32.000 0.00 0.00 33.96 4.40
1850 2636 5.616488 ATTGCATTTTGCCTGATTTTGTC 57.384 34.783 0.00 0.00 44.23 3.18
1871 2657 1.730501 GCTCTGCAACATCAGTGCTA 58.269 50.000 9.66 0.00 45.14 3.49
1877 2663 2.154462 GCAACATCAGTGCTAACCTGT 58.846 47.619 0.00 0.00 0.00 4.00
1897 2683 1.702401 TCATGGCCCTTCACACTGTTA 59.298 47.619 0.00 0.00 0.00 2.41
1923 2709 5.404466 CCATTTTGGCAACTCTTATTCCA 57.596 39.130 0.00 0.00 37.61 3.53
1924 2710 5.413499 CCATTTTGGCAACTCTTATTCCAG 58.587 41.667 0.00 0.00 37.61 3.86
1925 2711 5.047092 CCATTTTGGCAACTCTTATTCCAGT 60.047 40.000 0.00 0.00 37.61 4.00
1926 2712 5.452078 TTTTGGCAACTCTTATTCCAGTG 57.548 39.130 0.00 0.00 37.61 3.66
1927 2713 3.788227 TGGCAACTCTTATTCCAGTGT 57.212 42.857 0.00 0.00 37.61 3.55
1928 2714 4.901197 TGGCAACTCTTATTCCAGTGTA 57.099 40.909 0.00 0.00 37.61 2.90
1929 2715 4.575885 TGGCAACTCTTATTCCAGTGTAC 58.424 43.478 0.00 0.00 37.61 2.90
1930 2716 4.041075 TGGCAACTCTTATTCCAGTGTACA 59.959 41.667 0.00 0.00 37.61 2.90
1931 2717 5.001232 GGCAACTCTTATTCCAGTGTACAA 58.999 41.667 0.00 0.00 0.00 2.41
1933 2719 6.151144 GGCAACTCTTATTCCAGTGTACAAAT 59.849 38.462 0.00 0.00 0.00 2.32
1934 2720 7.023575 GCAACTCTTATTCCAGTGTACAAATG 58.976 38.462 0.00 0.00 0.00 2.32
1935 2721 7.308589 GCAACTCTTATTCCAGTGTACAAATGT 60.309 37.037 0.00 0.00 0.00 2.71
1937 2723 9.436957 AACTCTTATTCCAGTGTACAAATGTAG 57.563 33.333 0.00 0.00 0.00 2.74
1938 2724 8.812972 ACTCTTATTCCAGTGTACAAATGTAGA 58.187 33.333 0.00 1.67 0.00 2.59
1939 2725 9.307121 CTCTTATTCCAGTGTACAAATGTAGAG 57.693 37.037 0.00 7.21 0.00 2.43
1940 2726 7.764443 TCTTATTCCAGTGTACAAATGTAGAGC 59.236 37.037 0.00 0.00 0.00 4.09
1944 2730 5.011635 TCCAGTGTACAAATGTAGAGCAGAA 59.988 40.000 0.00 0.00 0.00 3.02
1945 2731 5.349817 CCAGTGTACAAATGTAGAGCAGAAG 59.650 44.000 0.00 0.00 0.00 2.85
1991 2778 7.487829 CAGAACGAAAATTGGACAAAAGAAGAA 59.512 33.333 0.00 0.00 0.00 2.52
2011 2820 9.077885 AGAAGAATGCTTTATGAAGTTTTACCA 57.922 29.630 0.00 0.00 33.61 3.25
2017 2826 8.810652 TGCTTTATGAAGTTTTACCATGAAAC 57.189 30.769 0.00 0.00 37.28 2.78
2018 2827 7.870445 TGCTTTATGAAGTTTTACCATGAAACC 59.130 33.333 0.00 0.00 37.64 3.27
2033 2842 5.589855 CCATGAAACCATATGCAGTCAACTA 59.410 40.000 0.00 0.00 0.00 2.24
2035 2844 6.494893 TGAAACCATATGCAGTCAACTAAC 57.505 37.500 0.00 0.00 0.00 2.34
2036 2845 6.237901 TGAAACCATATGCAGTCAACTAACT 58.762 36.000 0.00 0.00 0.00 2.24
2039 2848 6.054860 ACCATATGCAGTCAACTAACTTCT 57.945 37.500 0.00 0.00 0.00 2.85
2047 2856 6.701841 TGCAGTCAACTAACTTCTTTCTGTAG 59.298 38.462 0.00 0.00 0.00 2.74
2049 2858 7.115663 GCAGTCAACTAACTTCTTTCTGTAGAG 59.884 40.741 0.00 0.00 0.00 2.43
2063 2884 5.654901 TCTGTAGAGAGGGATGATGTACT 57.345 43.478 0.00 0.00 0.00 2.73
2079 2900 7.667043 TGATGTACTATGAACAACTTTCCAC 57.333 36.000 0.00 0.00 0.00 4.02
2104 2925 2.439507 TCATATCTCCTTTGCCACTCCC 59.560 50.000 0.00 0.00 0.00 4.30
2105 2926 1.965414 TATCTCCTTTGCCACTCCCA 58.035 50.000 0.00 0.00 0.00 4.37
2106 2927 0.329596 ATCTCCTTTGCCACTCCCAC 59.670 55.000 0.00 0.00 0.00 4.61
2107 2928 0.768221 TCTCCTTTGCCACTCCCACT 60.768 55.000 0.00 0.00 0.00 4.00
2108 2929 0.322008 CTCCTTTGCCACTCCCACTC 60.322 60.000 0.00 0.00 0.00 3.51
2109 2930 1.059584 TCCTTTGCCACTCCCACTCA 61.060 55.000 0.00 0.00 0.00 3.41
2220 3041 1.151668 CGAAGCAGTTCTTGGGTGAG 58.848 55.000 0.00 0.00 34.56 3.51
2242 3063 6.313411 TGAGTTGCCATCTTTTGTTTCAAAAG 59.687 34.615 21.54 21.54 38.30 2.27
2247 3068 5.463392 GCCATCTTTTGTTTCAAAAGTCCTC 59.537 40.000 24.42 14.24 38.17 3.71
2274 3095 2.270352 TTGTGACATTCCCTGGTGTC 57.730 50.000 8.55 8.55 43.81 3.67
2323 3144 4.452825 TCAATTGACGGTAAGTTTCCACA 58.547 39.130 3.38 0.00 0.00 4.17
2326 3147 6.039941 TCAATTGACGGTAAGTTTCCACATTT 59.960 34.615 3.38 0.00 0.00 2.32
2351 3172 4.135747 CCACTGTTTTGGTTTCCATTGT 57.864 40.909 0.00 0.00 31.53 2.71
2353 3174 5.852827 CCACTGTTTTGGTTTCCATTGTAT 58.147 37.500 0.00 0.00 31.53 2.29
2354 3175 6.987386 CCACTGTTTTGGTTTCCATTGTATA 58.013 36.000 0.00 0.00 31.53 1.47
2356 3177 8.093927 CCACTGTTTTGGTTTCCATTGTATATT 58.906 33.333 0.00 0.00 31.53 1.28
2387 3208 8.001881 TGTAGCTTAAATTTCCTGTTTGTTGA 57.998 30.769 0.00 0.00 0.00 3.18
2459 3281 5.482908 ACAGTATTAGCTCTTGACAACCAG 58.517 41.667 0.00 0.00 0.00 4.00
2468 3290 4.058817 CTCTTGACAACCAGTGGTAGAAC 58.941 47.826 17.09 8.36 33.12 3.01
2648 3470 0.758734 TCCAAGTGTGGTCAGTGGAG 59.241 55.000 0.00 0.00 46.11 3.86
2682 3504 4.202441 AGTATCCAAGATCCACAATGCAC 58.798 43.478 0.00 0.00 0.00 4.57
2683 3505 1.452110 TCCAAGATCCACAATGCACG 58.548 50.000 0.00 0.00 0.00 5.34
2708 3530 5.068723 CGGAAAGCTGTATTTCTACCTCCTA 59.931 44.000 0.00 0.00 38.86 2.94
2737 3559 3.055819 TGTTACTCATGTCTGGAGAAGGC 60.056 47.826 0.00 0.00 36.26 4.35
2821 3646 6.417191 TTGTTCCTCTAAACATATCGTTGC 57.583 37.500 0.00 0.00 38.83 4.17
2828 3654 6.481976 CCTCTAAACATATCGTTGCCATACAA 59.518 38.462 0.00 0.00 38.07 2.41
2835 3661 8.840833 ACATATCGTTGCCATACAATAATACA 57.159 30.769 0.00 0.00 41.27 2.29
2850 3699 8.980143 ACAATAATACAAATGTAAGTGCCAAC 57.020 30.769 0.00 0.00 33.76 3.77
2860 3709 9.341899 CAAATGTAAGTGCCAACTAATTAACTC 57.658 33.333 0.00 0.00 34.77 3.01
2864 3713 5.148651 AGTGCCAACTAATTAACTCGTCT 57.851 39.130 0.00 0.00 33.79 4.18
2871 3720 7.545489 CCAACTAATTAACTCGTCTTACTCCT 58.455 38.462 0.00 0.00 0.00 3.69
2875 3724 5.662674 ATTAACTCGTCTTACTCCTGCTT 57.337 39.130 0.00 0.00 0.00 3.91
2882 3731 5.227908 TCGTCTTACTCCTGCTTTAAACAG 58.772 41.667 9.51 9.51 34.82 3.16
2883 3732 4.989168 CGTCTTACTCCTGCTTTAAACAGT 59.011 41.667 13.29 2.47 33.09 3.55
2892 3743 6.966021 TCCTGCTTTAAACAGTATTTCACAC 58.034 36.000 13.29 0.00 33.09 3.82
2894 3745 7.230510 TCCTGCTTTAAACAGTATTTCACACAT 59.769 33.333 13.29 0.00 33.09 3.21
2895 3746 7.326789 CCTGCTTTAAACAGTATTTCACACATG 59.673 37.037 13.29 0.00 33.09 3.21
2899 3750 9.607285 CTTTAAACAGTATTTCACACATGGTAC 57.393 33.333 0.00 0.00 0.00 3.34
2906 3757 7.173218 CAGTATTTCACACATGGTACTTCAACT 59.827 37.037 0.00 0.00 0.00 3.16
2931 3783 7.971004 GCAAGTTGCATAAATTAACTACTCC 57.029 36.000 22.90 0.00 44.26 3.85
2932 3784 6.972901 GCAAGTTGCATAAATTAACTACTCCC 59.027 38.462 22.90 0.00 44.26 4.30
2933 3785 7.148069 GCAAGTTGCATAAATTAACTACTCCCT 60.148 37.037 22.90 0.00 44.26 4.20
2934 3786 8.398665 CAAGTTGCATAAATTAACTACTCCCTC 58.601 37.037 0.00 0.00 33.82 4.30
2936 3788 7.770897 AGTTGCATAAATTAACTACTCCCTCTG 59.229 37.037 0.00 0.00 33.22 3.35
2937 3789 7.195374 TGCATAAATTAACTACTCCCTCTGT 57.805 36.000 0.00 0.00 0.00 3.41
2938 3790 7.630082 TGCATAAATTAACTACTCCCTCTGTT 58.370 34.615 0.00 0.00 0.00 3.16
2939 3791 7.769044 TGCATAAATTAACTACTCCCTCTGTTC 59.231 37.037 0.00 0.00 0.00 3.18
2940 3792 7.769044 GCATAAATTAACTACTCCCTCTGTTCA 59.231 37.037 0.00 0.00 0.00 3.18
2941 3793 9.099454 CATAAATTAACTACTCCCTCTGTTCAC 57.901 37.037 0.00 0.00 0.00 3.18
2942 3794 6.936968 AATTAACTACTCCCTCTGTTCACT 57.063 37.500 0.00 0.00 0.00 3.41
2943 3795 6.936968 ATTAACTACTCCCTCTGTTCACTT 57.063 37.500 0.00 0.00 0.00 3.16
2944 3796 8.431910 AATTAACTACTCCCTCTGTTCACTTA 57.568 34.615 0.00 0.00 0.00 2.24
2945 3797 8.611051 ATTAACTACTCCCTCTGTTCACTTAT 57.389 34.615 0.00 0.00 0.00 1.73
2946 3798 9.710818 ATTAACTACTCCCTCTGTTCACTTATA 57.289 33.333 0.00 0.00 0.00 0.98
2947 3799 9.710818 TTAACTACTCCCTCTGTTCACTTATAT 57.289 33.333 0.00 0.00 0.00 0.86
2949 3801 9.710818 AACTACTCCCTCTGTTCACTTATATAA 57.289 33.333 0.00 0.00 0.00 0.98
2950 3802 9.357161 ACTACTCCCTCTGTTCACTTATATAAG 57.643 37.037 18.99 18.99 39.18 1.73
2951 3803 9.575868 CTACTCCCTCTGTTCACTTATATAAGA 57.424 37.037 25.83 5.05 37.08 2.10
2952 3804 8.240267 ACTCCCTCTGTTCACTTATATAAGAC 57.760 38.462 25.83 15.30 37.08 3.01
2953 3805 7.013464 ACTCCCTCTGTTCACTTATATAAGACG 59.987 40.741 25.83 16.70 37.08 4.18
2954 3806 6.832384 TCCCTCTGTTCACTTATATAAGACGT 59.168 38.462 25.83 4.92 37.08 4.34
2955 3807 7.341256 TCCCTCTGTTCACTTATATAAGACGTT 59.659 37.037 25.83 3.75 37.08 3.99
2956 3808 7.980099 CCCTCTGTTCACTTATATAAGACGTTT 59.020 37.037 25.83 3.40 37.08 3.60
2957 3809 9.367444 CCTCTGTTCACTTATATAAGACGTTTT 57.633 33.333 25.83 2.71 37.08 2.43
2961 3813 9.642327 TGTTCACTTATATAAGACGTTTTAGCA 57.358 29.630 25.83 10.56 37.08 3.49
2969 3821 6.730960 ATAAGACGTTTTAGCAAATTCGGA 57.269 33.333 4.75 0.00 0.00 4.55
2970 3822 4.400036 AGACGTTTTAGCAAATTCGGAC 57.600 40.909 0.00 0.00 0.00 4.79
2971 3823 3.810941 AGACGTTTTAGCAAATTCGGACA 59.189 39.130 0.00 0.00 0.00 4.02
2972 3824 4.084013 AGACGTTTTAGCAAATTCGGACAG 60.084 41.667 0.00 0.00 0.00 3.51
2973 3825 3.562557 ACGTTTTAGCAAATTCGGACAGT 59.437 39.130 0.00 0.00 0.00 3.55
2974 3826 3.906008 CGTTTTAGCAAATTCGGACAGTG 59.094 43.478 0.00 0.00 0.00 3.66
2975 3827 4.553938 CGTTTTAGCAAATTCGGACAGTGT 60.554 41.667 0.00 0.00 0.00 3.55
2976 3828 5.333492 CGTTTTAGCAAATTCGGACAGTGTA 60.333 40.000 0.00 0.00 0.00 2.90
2977 3829 5.600908 TTTAGCAAATTCGGACAGTGTAC 57.399 39.130 0.00 0.00 0.00 2.90
2978 3830 3.402628 AGCAAATTCGGACAGTGTACT 57.597 42.857 3.47 0.00 0.00 2.73
2979 3831 4.530710 AGCAAATTCGGACAGTGTACTA 57.469 40.909 3.47 0.00 0.00 1.82
2980 3832 4.890088 AGCAAATTCGGACAGTGTACTAA 58.110 39.130 3.47 0.00 0.00 2.24
2981 3833 5.302360 AGCAAATTCGGACAGTGTACTAAA 58.698 37.500 3.47 0.00 0.00 1.85
2982 3834 5.178809 AGCAAATTCGGACAGTGTACTAAAC 59.821 40.000 3.47 0.00 0.00 2.01
2983 3835 5.049954 GCAAATTCGGACAGTGTACTAAACA 60.050 40.000 3.47 0.00 35.06 2.83
2984 3836 6.590357 CAAATTCGGACAGTGTACTAAACAG 58.410 40.000 3.47 0.00 39.29 3.16
2985 3837 3.293311 TCGGACAGTGTACTAAACAGC 57.707 47.619 3.47 0.00 39.29 4.40
2986 3838 2.889045 TCGGACAGTGTACTAAACAGCT 59.111 45.455 3.47 0.00 39.29 4.24
2987 3839 3.057736 TCGGACAGTGTACTAAACAGCTC 60.058 47.826 3.47 0.00 39.29 4.09
2988 3840 3.305131 CGGACAGTGTACTAAACAGCTCA 60.305 47.826 3.47 0.00 39.29 4.26
2989 3841 4.628074 GGACAGTGTACTAAACAGCTCAA 58.372 43.478 0.00 0.00 39.29 3.02
2990 3842 5.054477 GGACAGTGTACTAAACAGCTCAAA 58.946 41.667 0.00 0.00 39.29 2.69
2991 3843 5.050295 GGACAGTGTACTAAACAGCTCAAAC 60.050 44.000 0.00 0.00 39.29 2.93
2992 3844 4.814771 ACAGTGTACTAAACAGCTCAAACC 59.185 41.667 0.00 0.00 39.29 3.27
2993 3845 4.213482 CAGTGTACTAAACAGCTCAAACCC 59.787 45.833 0.00 0.00 39.29 4.11
2994 3846 4.131596 GTGTACTAAACAGCTCAAACCCA 58.868 43.478 0.00 0.00 39.29 4.51
2995 3847 4.213482 GTGTACTAAACAGCTCAAACCCAG 59.787 45.833 0.00 0.00 39.29 4.45
2996 3848 2.230660 ACTAAACAGCTCAAACCCAGC 58.769 47.619 0.00 0.00 37.12 4.85
3000 3852 4.809070 AGCTCAAACCCAGCTGTC 57.191 55.556 13.81 0.00 45.85 3.51
3001 3853 2.149530 AGCTCAAACCCAGCTGTCT 58.850 52.632 13.81 0.00 45.85 3.41
3002 3854 0.250640 AGCTCAAACCCAGCTGTCTG 60.251 55.000 13.81 3.19 45.85 3.51
3003 3855 0.250467 GCTCAAACCCAGCTGTCTGA 60.250 55.000 13.81 8.34 42.95 3.27
3004 3856 1.815408 GCTCAAACCCAGCTGTCTGAA 60.815 52.381 13.81 0.00 42.95 3.02
3005 3857 2.575532 CTCAAACCCAGCTGTCTGAAA 58.424 47.619 13.81 0.00 42.95 2.69
3006 3858 2.291741 CTCAAACCCAGCTGTCTGAAAC 59.708 50.000 13.81 0.00 42.95 2.78
3007 3859 1.002468 CAAACCCAGCTGTCTGAAACG 60.002 52.381 13.81 0.00 42.95 3.60
3008 3860 1.166531 AACCCAGCTGTCTGAAACGC 61.167 55.000 13.81 0.00 42.95 4.84
3009 3861 2.328099 CCCAGCTGTCTGAAACGCC 61.328 63.158 13.81 0.00 42.95 5.68
3010 3862 1.302033 CCAGCTGTCTGAAACGCCT 60.302 57.895 13.81 0.00 42.95 5.52
3011 3863 0.886490 CCAGCTGTCTGAAACGCCTT 60.886 55.000 13.81 0.00 42.95 4.35
3012 3864 1.608025 CCAGCTGTCTGAAACGCCTTA 60.608 52.381 13.81 0.00 42.95 2.69
3013 3865 2.350522 CAGCTGTCTGAAACGCCTTAT 58.649 47.619 5.25 0.00 42.95 1.73
3014 3866 3.521560 CAGCTGTCTGAAACGCCTTATA 58.478 45.455 5.25 0.00 42.95 0.98
3015 3867 3.932710 CAGCTGTCTGAAACGCCTTATAA 59.067 43.478 5.25 0.00 42.95 0.98
3016 3868 4.391830 CAGCTGTCTGAAACGCCTTATAAA 59.608 41.667 5.25 0.00 42.95 1.40
3017 3869 5.001232 AGCTGTCTGAAACGCCTTATAAAA 58.999 37.500 0.00 0.00 0.00 1.52
3018 3870 5.472137 AGCTGTCTGAAACGCCTTATAAAAA 59.528 36.000 0.00 0.00 0.00 1.94
3019 3871 5.567915 GCTGTCTGAAACGCCTTATAAAAAC 59.432 40.000 0.00 0.00 0.00 2.43
3020 3872 5.681880 TGTCTGAAACGCCTTATAAAAACG 58.318 37.500 1.22 1.22 0.00 3.60
3021 3873 5.466058 TGTCTGAAACGCCTTATAAAAACGA 59.534 36.000 8.05 0.00 0.00 3.85
3022 3874 6.018098 TGTCTGAAACGCCTTATAAAAACGAA 60.018 34.615 8.05 0.00 0.00 3.85
3023 3875 6.301607 GTCTGAAACGCCTTATAAAAACGAAC 59.698 38.462 8.05 1.79 0.00 3.95
3024 3876 5.138788 TGAAACGCCTTATAAAAACGAACG 58.861 37.500 8.05 0.00 0.00 3.95
3025 3877 3.727780 ACGCCTTATAAAAACGAACGG 57.272 42.857 8.05 0.00 0.00 4.44
3026 3878 3.324993 ACGCCTTATAAAAACGAACGGA 58.675 40.909 8.05 0.00 0.00 4.69
3027 3879 3.368843 ACGCCTTATAAAAACGAACGGAG 59.631 43.478 8.05 0.00 0.00 4.63
3028 3880 3.242188 CGCCTTATAAAAACGAACGGAGG 60.242 47.826 0.00 0.00 0.00 4.30
3029 3881 3.064408 GCCTTATAAAAACGAACGGAGGG 59.936 47.826 0.00 0.00 0.00 4.30
3030 3882 4.506758 CCTTATAAAAACGAACGGAGGGA 58.493 43.478 0.00 0.00 0.00 4.20
3031 3883 4.569564 CCTTATAAAAACGAACGGAGGGAG 59.430 45.833 0.00 0.00 0.00 4.30
3032 3884 3.690475 ATAAAAACGAACGGAGGGAGT 57.310 42.857 0.00 0.00 0.00 3.85
3033 3885 4.806640 ATAAAAACGAACGGAGGGAGTA 57.193 40.909 0.00 0.00 0.00 2.59
3034 3886 3.690475 AAAAACGAACGGAGGGAGTAT 57.310 42.857 0.00 0.00 0.00 2.12
3071 3923 7.667219 CAGGAAGCCTGTATATGTTGGATAAAT 59.333 37.037 5.31 0.00 45.82 1.40
3073 3925 9.686683 GGAAGCCTGTATATGTTGGATAAATAT 57.313 33.333 0.00 0.00 0.00 1.28
3108 3960 9.480053 AACCATACATTTTTGACAATTCTTCTG 57.520 29.630 0.00 0.00 0.00 3.02
3114 3966 9.736023 ACATTTTTGACAATTCTTCTGTTCTAC 57.264 29.630 0.00 0.00 0.00 2.59
3115 3967 9.956720 CATTTTTGACAATTCTTCTGTTCTACT 57.043 29.630 0.00 0.00 0.00 2.57
3117 3969 7.730364 TTTGACAATTCTTCTGTTCTACTCC 57.270 36.000 0.00 0.00 0.00 3.85
3174 4026 8.964476 AATAGTTGTAATGTGATCCTTGTAGG 57.036 34.615 0.00 0.00 36.46 3.18
3216 4068 7.322699 GTCAAGTCATTAAAAGAAATTCGCGAA 59.677 33.333 25.66 25.66 0.00 4.70
3255 4107 2.549754 CGAAAGGTCTGCTGTCAATTGT 59.450 45.455 5.13 0.00 0.00 2.71
3261 4113 3.693085 GGTCTGCTGTCAATTGTCATCAT 59.307 43.478 9.15 0.00 0.00 2.45
3346 4200 1.352352 CAGGTGAGGATGGGTCTTTGT 59.648 52.381 0.00 0.00 0.00 2.83
3400 4254 8.043113 TCACAGAGCAAGTAAGATATCAACATT 58.957 33.333 5.32 0.00 0.00 2.71
3501 4355 3.054361 GGTGGGTGATGTTTCATAGGACT 60.054 47.826 0.00 0.00 33.56 3.85
3502 4356 3.941483 GTGGGTGATGTTTCATAGGACTG 59.059 47.826 0.00 0.00 33.56 3.51
3607 4461 5.839621 TCTTGTAGCGAACTAAGTTTGAGT 58.160 37.500 0.00 0.00 0.00 3.41
3626 4480 8.455903 TTTGAGTCTGAAATTCTCAAATGAGT 57.544 30.769 13.85 2.26 46.31 3.41
3757 4611 9.138596 TGTGGAATTCAATGATATCATGTCAAT 57.861 29.630 18.85 13.32 36.56 2.57
3786 4640 4.406003 TCTGGAACTAAATGCTACTCCCTC 59.594 45.833 0.00 0.00 0.00 4.30
3787 4641 4.362677 TGGAACTAAATGCTACTCCCTCT 58.637 43.478 0.00 0.00 0.00 3.69
3803 4657 5.251700 ACTCCCTCTGTTCCATAATTCTTGT 59.748 40.000 0.00 0.00 0.00 3.16
3805 4659 5.250543 TCCCTCTGTTCCATAATTCTTGTCA 59.749 40.000 0.00 0.00 0.00 3.58
3814 4668 9.573133 GTTCCATAATTCTTGTCATGGTTTTAG 57.427 33.333 3.23 0.00 39.21 1.85
3870 4767 6.831727 TGCTCAATGTTTCATTTGAACTTG 57.168 33.333 0.00 0.00 33.13 3.16
3880 4777 4.362279 TCATTTGAACTTGAGTGCTTTGC 58.638 39.130 0.00 0.00 0.00 3.68
3927 4824 3.215151 TGCTGGTTTTGTTGACGGATTA 58.785 40.909 0.00 0.00 0.00 1.75
3941 4838 4.335874 TGACGGATTAGAGCTACTGTTCTC 59.664 45.833 0.00 0.00 35.40 2.87
3942 4839 4.528920 ACGGATTAGAGCTACTGTTCTCT 58.471 43.478 14.01 14.01 41.97 3.10
3962 4859 4.623863 TCTGCAGCTATATCATGGGGATA 58.376 43.478 9.47 0.00 42.50 2.59
4000 4897 6.447162 GTTTGAGGCTTGTAGTAATTTGCTT 58.553 36.000 0.00 0.00 0.00 3.91
4117 5014 9.896645 ACTTTCATATCTAGAATGCTGAAGAAA 57.103 29.630 0.00 0.00 0.00 2.52
4119 5016 9.671279 TTTCATATCTAGAATGCTGAAGAAACA 57.329 29.630 0.00 0.00 0.00 2.83
4120 5017 9.842775 TTCATATCTAGAATGCTGAAGAAACAT 57.157 29.630 0.00 0.00 0.00 2.71
4121 5018 9.842775 TCATATCTAGAATGCTGAAGAAACATT 57.157 29.630 0.00 0.00 36.74 2.71
4133 5030 9.844790 TGCTGAAGAAACATTTACATCATTAAG 57.155 29.630 0.00 0.00 0.00 1.85
4162 5059 9.991906 GGCTGTATAAGTATAACCTTGTGATAA 57.008 33.333 0.00 0.00 0.00 1.75
4202 5099 8.924691 ACATTTTACATGAATGTTTTCCGAATG 58.075 29.630 0.00 6.46 43.23 2.67
4203 5100 8.924691 CATTTTACATGAATGTTTTCCGAATGT 58.075 29.630 0.00 0.00 41.97 2.71
4204 5101 8.879342 TTTTACATGAATGTTTTCCGAATGTT 57.121 26.923 0.00 0.00 41.97 2.71
4205 5102 8.879342 TTTACATGAATGTTTTCCGAATGTTT 57.121 26.923 0.00 0.00 41.97 2.83
4286 5183 2.352814 GCGTACTCACATGTCAGGTCTT 60.353 50.000 0.55 0.00 0.00 3.01
4291 5188 5.398603 ACTCACATGTCAGGTCTTAGAAG 57.601 43.478 0.55 0.00 0.00 2.85
4295 5192 6.688578 TCACATGTCAGGTCTTAGAAGTAAC 58.311 40.000 0.00 0.00 0.00 2.50
4296 5193 6.266786 TCACATGTCAGGTCTTAGAAGTAACA 59.733 38.462 0.00 0.00 0.00 2.41
4334 5231 5.604758 CTGGTTCTTCATCCAGTAGATCA 57.395 43.478 0.00 0.00 44.19 2.92
4335 5232 6.172136 CTGGTTCTTCATCCAGTAGATCAT 57.828 41.667 0.00 0.00 44.19 2.45
4363 5260 4.859245 TCTCGATCTCAACATCTTGTTTCG 59.141 41.667 6.06 6.06 38.77 3.46
4367 5265 5.613358 ATCTCAACATCTTGTTTCGTTCC 57.387 39.130 0.00 0.00 38.77 3.62
4388 5286 2.537214 CGATGGATGCGGATATTGATCG 59.463 50.000 0.00 0.00 32.28 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
325 327 5.086621 AGAAAACCAATAGCCAGAACCATT 58.913 37.500 0.00 0.00 0.00 3.16
482 484 3.133003 TCTGGATTCCTAAGGCTCGAAAG 59.867 47.826 3.95 0.00 0.00 2.62
618 624 4.161377 TCAAGGAAAAACTCCCAAGGTTTG 59.839 41.667 0.00 0.00 46.81 2.93
647 653 5.710099 TCACTGGAAAGTTTTCAGTTTCTGT 59.290 36.000 24.34 2.84 40.81 3.41
661 667 3.612479 CGCCCTTGAATTTCACTGGAAAG 60.612 47.826 14.61 2.97 45.58 2.62
678 684 1.906105 TTCGGTCTATTTGGCGCCCT 61.906 55.000 26.77 11.49 0.00 5.19
683 689 2.361119 GGGGAATTTCGGTCTATTTGGC 59.639 50.000 0.00 0.00 0.00 4.52
689 695 3.446968 TCAGAAGGGGAATTTCGGTCTA 58.553 45.455 0.00 0.00 0.00 2.59
716 728 0.661020 AACCGCGGAACTTCAACAAG 59.339 50.000 35.90 0.00 35.50 3.16
721 733 0.745128 AACACAACCGCGGAACTTCA 60.745 50.000 35.90 0.00 0.00 3.02
731 743 1.269517 CCCACATTCCAAACACAACCG 60.270 52.381 0.00 0.00 0.00 4.44
807 822 5.687166 ACCGGAATTTCATACAGAACCTA 57.313 39.130 9.46 0.00 35.56 3.08
827 842 3.681593 TGCTCAGGGTGTTACATAAACC 58.318 45.455 0.00 0.00 37.27 3.27
1005 1582 2.092882 GCGCGTGTACCCAGACTTC 61.093 63.158 8.43 0.00 0.00 3.01
1356 1933 3.815569 GATGCCGAGCTCCGACGAG 62.816 68.421 8.47 0.00 41.76 4.18
1426 2003 2.262915 CTGCGACTCCAGTCCACC 59.737 66.667 1.01 0.00 41.86 4.61
1430 2007 1.316706 ACCTAGCTGCGACTCCAGTC 61.317 60.000 0.00 0.00 41.47 3.51
1440 2017 2.409948 ATGGAAGACAACCTAGCTGC 57.590 50.000 0.00 0.00 0.00 5.25
1445 2022 1.339631 CCGCCAATGGAAGACAACCTA 60.340 52.381 2.05 0.00 0.00 3.08
1446 2023 0.609131 CCGCCAATGGAAGACAACCT 60.609 55.000 2.05 0.00 0.00 3.50
1452 2039 2.342650 GCAAGCCGCCAATGGAAGA 61.343 57.895 2.05 0.00 32.94 2.87
1496 2169 7.010183 GCAGAAGATACAAAATTACAGACGCTA 59.990 37.037 0.00 0.00 0.00 4.26
1513 2186 3.181471 GCAAGTAGCTCCTGCAGAAGATA 60.181 47.826 17.39 3.93 42.74 1.98
1514 2187 2.419851 GCAAGTAGCTCCTGCAGAAGAT 60.420 50.000 17.39 5.30 42.74 2.40
1515 2188 1.066573 GCAAGTAGCTCCTGCAGAAGA 60.067 52.381 17.39 3.59 42.74 2.87
1530 2203 4.469883 CTGTCCACAGCAGCAAGT 57.530 55.556 0.00 0.00 37.15 3.16
1622 2295 7.303182 TCTGGATGGTCATATACTTACAAGG 57.697 40.000 0.00 0.00 0.00 3.61
1662 2335 3.084039 TGCAGAAGGGCAAATAGAGTTG 58.916 45.455 0.00 0.00 41.65 3.16
1663 2336 3.439857 TGCAGAAGGGCAAATAGAGTT 57.560 42.857 0.00 0.00 41.65 3.01
1686 2359 7.088905 ACTACTAAACGTAACCAATCTGACTG 58.911 38.462 0.00 0.00 0.00 3.51
1705 2378 9.778993 CAGTGCGAACTTATTTTAGTACTACTA 57.221 33.333 0.91 0.00 0.00 1.82
1706 2379 8.302438 ACAGTGCGAACTTATTTTAGTACTACT 58.698 33.333 0.91 0.00 0.00 2.57
1707 2380 8.458212 ACAGTGCGAACTTATTTTAGTACTAC 57.542 34.615 0.91 0.00 0.00 2.73
1708 2381 8.298854 TGACAGTGCGAACTTATTTTAGTACTA 58.701 33.333 0.00 0.00 0.00 1.82
1709 2382 7.149973 TGACAGTGCGAACTTATTTTAGTACT 58.850 34.615 0.00 0.00 0.00 2.73
1710 2383 7.115947 ACTGACAGTGCGAACTTATTTTAGTAC 59.884 37.037 7.47 0.00 0.00 2.73
1714 2387 6.704493 AGAACTGACAGTGCGAACTTATTTTA 59.296 34.615 9.33 0.00 0.00 1.52
1716 2490 5.057149 AGAACTGACAGTGCGAACTTATTT 58.943 37.500 9.33 0.00 0.00 1.40
1719 2493 3.728076 AGAACTGACAGTGCGAACTTA 57.272 42.857 9.33 0.00 0.00 2.24
1723 2497 3.438781 ACAAAAAGAACTGACAGTGCGAA 59.561 39.130 9.33 0.00 0.00 4.70
1726 2500 5.229921 TGTACAAAAAGAACTGACAGTGC 57.770 39.130 9.33 7.26 0.00 4.40
1809 2588 5.749588 TGCAATTGACATTTTTGAGTGAGTG 59.250 36.000 10.34 0.00 0.00 3.51
1812 2591 7.789273 AAATGCAATTGACATTTTTGAGTGA 57.211 28.000 23.46 0.00 43.42 3.41
1850 2636 0.168348 GCACTGATGTTGCAGAGCTG 59.832 55.000 0.00 0.00 45.23 4.24
1858 2644 3.402110 TGACAGGTTAGCACTGATGTTG 58.598 45.455 0.00 0.00 39.24 3.33
1860 2646 3.603532 CATGACAGGTTAGCACTGATGT 58.396 45.455 0.00 0.00 39.24 3.06
1871 2657 0.251341 GTGAAGGGCCATGACAGGTT 60.251 55.000 6.18 0.00 0.00 3.50
1877 2663 0.478072 AACAGTGTGAAGGGCCATGA 59.522 50.000 6.18 0.00 0.00 3.07
1907 2693 3.788227 ACACTGGAATAAGAGTTGCCA 57.212 42.857 0.00 0.00 0.00 4.92
1918 2704 5.804639 TGCTCTACATTTGTACACTGGAAT 58.195 37.500 0.00 0.00 0.00 3.01
1919 2705 5.011635 TCTGCTCTACATTTGTACACTGGAA 59.988 40.000 0.00 0.00 0.00 3.53
1921 2707 4.820897 TCTGCTCTACATTTGTACACTGG 58.179 43.478 0.00 0.00 0.00 4.00
1922 2708 6.159293 TCTTCTGCTCTACATTTGTACACTG 58.841 40.000 0.00 0.00 0.00 3.66
1923 2709 6.346477 TCTTCTGCTCTACATTTGTACACT 57.654 37.500 0.00 0.00 0.00 3.55
1924 2710 7.421530 TTTCTTCTGCTCTACATTTGTACAC 57.578 36.000 0.00 0.00 0.00 2.90
1925 2711 8.445275 TTTTTCTTCTGCTCTACATTTGTACA 57.555 30.769 0.00 0.00 0.00 2.90
1951 2737 3.719924 TCGTTCTGTACACCGACATTTT 58.280 40.909 0.00 0.00 0.00 1.82
1953 2739 3.374220 TTCGTTCTGTACACCGACATT 57.626 42.857 6.95 0.00 0.00 2.71
1954 2740 3.374220 TTTCGTTCTGTACACCGACAT 57.626 42.857 6.95 0.00 0.00 3.06
1955 2741 2.867287 TTTCGTTCTGTACACCGACA 57.133 45.000 6.95 0.00 0.00 4.35
1956 2742 4.451557 CAATTTTCGTTCTGTACACCGAC 58.548 43.478 6.95 0.00 0.00 4.79
1958 2744 3.495377 TCCAATTTTCGTTCTGTACACCG 59.505 43.478 0.00 0.00 0.00 4.94
1967 2754 7.749539 TTCTTCTTTTGTCCAATTTTCGTTC 57.250 32.000 0.00 0.00 0.00 3.95
1991 2778 9.423061 GTTTCATGGTAAAACTTCATAAAGCAT 57.577 29.630 0.00 0.00 35.81 3.79
2007 2816 5.109500 TGACTGCATATGGTTTCATGGTA 57.891 39.130 4.56 0.00 34.96 3.25
2011 2820 6.886459 AGTTAGTTGACTGCATATGGTTTCAT 59.114 34.615 4.56 0.00 37.40 2.57
2017 2826 6.992063 AAGAAGTTAGTTGACTGCATATGG 57.008 37.500 4.56 0.00 0.00 2.74
2018 2827 8.173775 CAGAAAGAAGTTAGTTGACTGCATATG 58.826 37.037 0.00 0.00 0.00 1.78
2033 2842 6.019748 TCATCCCTCTCTACAGAAAGAAGTT 58.980 40.000 0.00 0.00 0.00 2.66
2035 2844 6.098124 ACATCATCCCTCTCTACAGAAAGAAG 59.902 42.308 0.00 0.00 0.00 2.85
2036 2845 5.960811 ACATCATCCCTCTCTACAGAAAGAA 59.039 40.000 0.00 0.00 0.00 2.52
2039 2848 6.436027 AGTACATCATCCCTCTCTACAGAAA 58.564 40.000 0.00 0.00 0.00 2.52
2047 2856 6.656632 TGTTCATAGTACATCATCCCTCTC 57.343 41.667 0.00 0.00 0.00 3.20
2049 2858 6.821388 AGTTGTTCATAGTACATCATCCCTC 58.179 40.000 0.00 0.00 0.00 4.30
2079 2900 4.521146 AGTGGCAAAGGAGATATGAACTG 58.479 43.478 0.00 0.00 0.00 3.16
2220 3041 6.421377 ACTTTTGAAACAAAAGATGGCAAC 57.579 33.333 30.38 0.00 39.04 4.17
2242 3063 4.749245 ATGTCACAATTTTGTCGAGGAC 57.251 40.909 0.00 0.00 39.91 3.85
2247 3068 4.229096 CAGGGAATGTCACAATTTTGTCG 58.771 43.478 0.00 0.00 39.91 4.35
2274 3095 4.037923 ACCAGTTTGCCAGTACAATTCTTG 59.962 41.667 0.00 0.00 0.00 3.02
2360 3181 6.447162 ACAAACAGGAAATTTAAGCTACAGC 58.553 36.000 0.00 0.00 42.49 4.40
2387 3208 3.134442 TCCGTAATTAGGCCGTACCAAAT 59.866 43.478 0.00 0.00 43.14 2.32
2459 3281 4.392138 GCACAATCAGGTTAGTTCTACCAC 59.608 45.833 0.00 0.00 38.16 4.16
2648 3470 5.537300 TCTTGGATACTACCTTCATCAGC 57.463 43.478 0.00 0.00 37.61 4.26
2682 3504 2.284417 GGTAGAAATACAGCTTTCCGCG 59.716 50.000 0.00 0.00 45.59 6.46
2683 3505 3.532542 AGGTAGAAATACAGCTTTCCGC 58.467 45.455 0.00 0.00 36.06 5.54
2708 3530 4.532126 TCCAGACATGAGTAACATTGACCT 59.468 41.667 0.00 0.00 37.07 3.85
2815 3640 7.990917 ACATTTGTATTATTGTATGGCAACGA 58.009 30.769 0.00 0.00 40.28 3.85
2821 3646 9.677567 GGCACTTACATTTGTATTATTGTATGG 57.322 33.333 0.00 0.00 0.00 2.74
2835 3661 8.234546 CGAGTTAATTAGTTGGCACTTACATTT 58.765 33.333 0.00 0.00 34.06 2.32
2850 3699 6.797454 AGCAGGAGTAAGACGAGTTAATTAG 58.203 40.000 0.00 0.00 0.00 1.73
2853 3702 5.662674 AAGCAGGAGTAAGACGAGTTAAT 57.337 39.130 0.00 0.00 0.00 1.40
2860 3709 4.989168 ACTGTTTAAAGCAGGAGTAAGACG 59.011 41.667 16.79 0.00 38.22 4.18
2864 3713 8.780249 GTGAAATACTGTTTAAAGCAGGAGTAA 58.220 33.333 16.79 3.76 38.22 2.24
2871 3720 7.144661 CCATGTGTGAAATACTGTTTAAAGCA 58.855 34.615 0.00 0.00 0.00 3.91
2875 3724 8.911918 AGTACCATGTGTGAAATACTGTTTAA 57.088 30.769 0.00 0.00 0.00 1.52
2882 3731 7.298122 CAGTTGAAGTACCATGTGTGAAATAC 58.702 38.462 0.00 0.00 0.00 1.89
2883 3732 6.072728 GCAGTTGAAGTACCATGTGTGAAATA 60.073 38.462 0.00 0.00 0.00 1.40
2892 3743 4.836125 AACTTGCAGTTGAAGTACCATG 57.164 40.909 1.44 0.00 37.00 3.66
2912 3764 7.630082 ACAGAGGGAGTAGTTAATTTATGCAA 58.370 34.615 0.00 0.00 0.00 4.08
2914 3766 7.769044 TGAACAGAGGGAGTAGTTAATTTATGC 59.231 37.037 0.00 0.00 0.00 3.14
2930 3782 7.040473 ACGTCTTATATAAGTGAACAGAGGG 57.960 40.000 19.58 3.74 34.93 4.30
2931 3783 8.928270 AAACGTCTTATATAAGTGAACAGAGG 57.072 34.615 19.58 8.80 34.93 3.69
2943 3795 9.531942 TCCGAATTTGCTAAAACGTCTTATATA 57.468 29.630 0.00 0.00 0.00 0.86
2944 3796 8.333186 GTCCGAATTTGCTAAAACGTCTTATAT 58.667 33.333 0.00 0.00 0.00 0.86
2945 3797 7.331440 TGTCCGAATTTGCTAAAACGTCTTATA 59.669 33.333 0.00 0.00 0.00 0.98
2946 3798 6.148150 TGTCCGAATTTGCTAAAACGTCTTAT 59.852 34.615 0.00 0.00 0.00 1.73
2947 3799 5.466058 TGTCCGAATTTGCTAAAACGTCTTA 59.534 36.000 0.00 0.00 0.00 2.10
2948 3800 4.273969 TGTCCGAATTTGCTAAAACGTCTT 59.726 37.500 0.00 0.00 0.00 3.01
2949 3801 3.810941 TGTCCGAATTTGCTAAAACGTCT 59.189 39.130 0.00 0.00 0.00 4.18
2950 3802 4.136517 TGTCCGAATTTGCTAAAACGTC 57.863 40.909 0.00 3.95 0.00 4.34
2951 3803 3.562557 ACTGTCCGAATTTGCTAAAACGT 59.437 39.130 8.50 0.00 0.00 3.99
2952 3804 3.906008 CACTGTCCGAATTTGCTAAAACG 59.094 43.478 0.00 3.98 0.00 3.60
2953 3805 4.855531 ACACTGTCCGAATTTGCTAAAAC 58.144 39.130 0.00 0.00 0.00 2.43
2954 3806 5.761234 AGTACACTGTCCGAATTTGCTAAAA 59.239 36.000 0.00 0.00 0.00 1.52
2955 3807 5.302360 AGTACACTGTCCGAATTTGCTAAA 58.698 37.500 0.00 0.00 0.00 1.85
2956 3808 4.890088 AGTACACTGTCCGAATTTGCTAA 58.110 39.130 0.00 0.00 0.00 3.09
2957 3809 4.530710 AGTACACTGTCCGAATTTGCTA 57.469 40.909 0.00 0.00 0.00 3.49
2958 3810 3.402628 AGTACACTGTCCGAATTTGCT 57.597 42.857 0.00 0.00 0.00 3.91
2959 3811 5.049954 TGTTTAGTACACTGTCCGAATTTGC 60.050 40.000 0.00 0.00 0.00 3.68
2960 3812 6.533819 TGTTTAGTACACTGTCCGAATTTG 57.466 37.500 0.00 0.00 0.00 2.32
2961 3813 5.178809 GCTGTTTAGTACACTGTCCGAATTT 59.821 40.000 0.00 0.00 32.10 1.82
2962 3814 4.689345 GCTGTTTAGTACACTGTCCGAATT 59.311 41.667 0.00 0.00 32.10 2.17
2963 3815 4.021368 AGCTGTTTAGTACACTGTCCGAAT 60.021 41.667 0.00 0.00 32.10 3.34
2964 3816 3.319972 AGCTGTTTAGTACACTGTCCGAA 59.680 43.478 0.00 0.00 32.10 4.30
2965 3817 2.889045 AGCTGTTTAGTACACTGTCCGA 59.111 45.455 0.00 0.00 32.10 4.55
2966 3818 3.243336 GAGCTGTTTAGTACACTGTCCG 58.757 50.000 0.00 0.00 32.10 4.79
2967 3819 4.252971 TGAGCTGTTTAGTACACTGTCC 57.747 45.455 0.00 0.00 32.10 4.02
2968 3820 5.050295 GGTTTGAGCTGTTTAGTACACTGTC 60.050 44.000 0.00 0.00 32.10 3.51
2969 3821 4.814771 GGTTTGAGCTGTTTAGTACACTGT 59.185 41.667 0.00 0.00 32.10 3.55
2970 3822 4.213482 GGGTTTGAGCTGTTTAGTACACTG 59.787 45.833 0.00 0.00 32.10 3.66
2971 3823 4.141574 TGGGTTTGAGCTGTTTAGTACACT 60.142 41.667 0.00 0.00 32.10 3.55
2972 3824 4.131596 TGGGTTTGAGCTGTTTAGTACAC 58.868 43.478 0.00 0.00 32.10 2.90
2973 3825 4.385825 CTGGGTTTGAGCTGTTTAGTACA 58.614 43.478 0.00 0.00 34.95 2.90
2974 3826 3.188667 GCTGGGTTTGAGCTGTTTAGTAC 59.811 47.826 0.00 0.00 33.37 2.73
2975 3827 3.072476 AGCTGGGTTTGAGCTGTTTAGTA 59.928 43.478 0.00 0.00 45.28 1.82
2976 3828 2.158608 AGCTGGGTTTGAGCTGTTTAGT 60.159 45.455 0.00 0.00 45.28 2.24
2977 3829 2.508526 AGCTGGGTTTGAGCTGTTTAG 58.491 47.619 0.00 0.00 45.28 1.85
2978 3830 2.656947 AGCTGGGTTTGAGCTGTTTA 57.343 45.000 0.00 0.00 45.28 2.01
2979 3831 3.520623 AGCTGGGTTTGAGCTGTTT 57.479 47.368 0.00 0.00 45.28 2.83
2984 3836 0.250467 TCAGACAGCTGGGTTTGAGC 60.250 55.000 19.93 0.00 42.53 4.26
2985 3837 2.260844 TTCAGACAGCTGGGTTTGAG 57.739 50.000 19.93 0.51 42.53 3.02
2986 3838 2.297701 GTTTCAGACAGCTGGGTTTGA 58.702 47.619 19.93 12.51 42.53 2.69
2987 3839 1.002468 CGTTTCAGACAGCTGGGTTTG 60.002 52.381 19.93 10.35 42.53 2.93
2988 3840 1.308998 CGTTTCAGACAGCTGGGTTT 58.691 50.000 19.93 0.00 42.53 3.27
2989 3841 1.166531 GCGTTTCAGACAGCTGGGTT 61.167 55.000 19.93 0.00 42.53 4.11
2990 3842 1.598130 GCGTTTCAGACAGCTGGGT 60.598 57.895 19.93 0.66 42.53 4.51
2991 3843 2.328099 GGCGTTTCAGACAGCTGGG 61.328 63.158 19.93 7.33 42.53 4.45
2992 3844 0.886490 AAGGCGTTTCAGACAGCTGG 60.886 55.000 19.93 0.00 42.53 4.85
2993 3845 1.795768 TAAGGCGTTTCAGACAGCTG 58.204 50.000 13.48 13.48 43.67 4.24
2994 3846 2.770164 ATAAGGCGTTTCAGACAGCT 57.230 45.000 0.00 0.00 0.00 4.24
2995 3847 4.939509 TTTATAAGGCGTTTCAGACAGC 57.060 40.909 0.00 0.00 0.00 4.40
2996 3848 5.788531 CGTTTTTATAAGGCGTTTCAGACAG 59.211 40.000 0.00 0.00 0.00 3.51
2997 3849 5.466058 TCGTTTTTATAAGGCGTTTCAGACA 59.534 36.000 0.00 0.00 0.00 3.41
2998 3850 5.919196 TCGTTTTTATAAGGCGTTTCAGAC 58.081 37.500 0.00 0.00 0.00 3.51
2999 3851 6.365050 GTTCGTTTTTATAAGGCGTTTCAGA 58.635 36.000 0.00 0.00 0.00 3.27
3000 3852 5.279751 CGTTCGTTTTTATAAGGCGTTTCAG 59.720 40.000 0.00 0.00 0.00 3.02
3001 3853 5.138788 CGTTCGTTTTTATAAGGCGTTTCA 58.861 37.500 0.00 0.00 0.00 2.69
3002 3854 4.550744 CCGTTCGTTTTTATAAGGCGTTTC 59.449 41.667 0.00 0.00 0.00 2.78
3003 3855 4.213059 TCCGTTCGTTTTTATAAGGCGTTT 59.787 37.500 0.00 0.00 0.00 3.60
3004 3856 3.745458 TCCGTTCGTTTTTATAAGGCGTT 59.255 39.130 0.00 0.00 0.00 4.84
3005 3857 3.324993 TCCGTTCGTTTTTATAAGGCGT 58.675 40.909 5.68 0.00 0.00 5.68
3006 3858 3.242188 CCTCCGTTCGTTTTTATAAGGCG 60.242 47.826 0.00 0.00 0.00 5.52
3007 3859 3.064408 CCCTCCGTTCGTTTTTATAAGGC 59.936 47.826 0.00 0.00 0.00 4.35
3008 3860 4.506758 TCCCTCCGTTCGTTTTTATAAGG 58.493 43.478 0.00 0.00 0.00 2.69
3009 3861 5.173664 ACTCCCTCCGTTCGTTTTTATAAG 58.826 41.667 0.00 0.00 0.00 1.73
3010 3862 5.151297 ACTCCCTCCGTTCGTTTTTATAA 57.849 39.130 0.00 0.00 0.00 0.98
3011 3863 4.806640 ACTCCCTCCGTTCGTTTTTATA 57.193 40.909 0.00 0.00 0.00 0.98
3012 3864 3.690475 ACTCCCTCCGTTCGTTTTTAT 57.310 42.857 0.00 0.00 0.00 1.40
3013 3865 4.806640 ATACTCCCTCCGTTCGTTTTTA 57.193 40.909 0.00 0.00 0.00 1.52
3014 3866 3.690475 ATACTCCCTCCGTTCGTTTTT 57.310 42.857 0.00 0.00 0.00 1.94
3015 3867 3.690475 AATACTCCCTCCGTTCGTTTT 57.310 42.857 0.00 0.00 0.00 2.43
3016 3868 3.690475 AAATACTCCCTCCGTTCGTTT 57.310 42.857 0.00 0.00 0.00 3.60
3017 3869 3.690475 AAAATACTCCCTCCGTTCGTT 57.310 42.857 0.00 0.00 0.00 3.85
3018 3870 3.690475 AAAAATACTCCCTCCGTTCGT 57.310 42.857 0.00 0.00 0.00 3.85
3083 3935 8.641541 ACAGAAGAATTGTCAAAAATGTATGGT 58.358 29.630 0.00 0.00 0.00 3.55
3084 3936 9.480053 AACAGAAGAATTGTCAAAAATGTATGG 57.520 29.630 0.00 0.00 0.00 2.74
3089 3941 9.956720 AGTAGAACAGAAGAATTGTCAAAAATG 57.043 29.630 0.00 0.00 0.00 2.32
3092 3944 7.042051 CGGAGTAGAACAGAAGAATTGTCAAAA 60.042 37.037 0.00 0.00 0.00 2.44
3097 3949 5.470047 ACGGAGTAGAACAGAAGAATTGT 57.530 39.130 0.00 0.00 41.94 2.71
3114 3966 7.870826 TGCATCATTTGGTATTAAATACGGAG 58.129 34.615 0.00 0.00 36.61 4.63
3115 3967 7.809546 TGCATCATTTGGTATTAAATACGGA 57.190 32.000 0.00 0.00 36.61 4.69
3116 3968 7.918033 TGTTGCATCATTTGGTATTAAATACGG 59.082 33.333 0.00 0.00 36.61 4.02
3117 3969 8.848948 TGTTGCATCATTTGGTATTAAATACG 57.151 30.769 0.00 0.00 36.61 3.06
3174 4026 0.602638 TGACCAGCCACGTCATCAAC 60.603 55.000 0.00 0.00 35.35 3.18
3216 4068 4.426736 TTCGTAAAGTGAAGGAAACCCT 57.573 40.909 0.00 0.00 34.97 4.34
3274 4126 5.329399 ACCAGCCACATCAAATACCTTTTA 58.671 37.500 0.00 0.00 0.00 1.52
3276 4128 3.778265 ACCAGCCACATCAAATACCTTT 58.222 40.909 0.00 0.00 0.00 3.11
3346 4200 6.594547 CACAAAATTGCCCATATTCACATTCA 59.405 34.615 0.00 0.00 0.00 2.57
3414 4268 5.294552 GGTGTAGCAGGTAATGTTCAAGATC 59.705 44.000 0.00 0.00 0.00 2.75
3501 4355 4.165372 ACTTTCCTTAGTTGGAGTGGTTCA 59.835 41.667 0.00 0.00 37.43 3.18
3502 4356 4.715713 ACTTTCCTTAGTTGGAGTGGTTC 58.284 43.478 0.00 0.00 37.43 3.62
3607 4461 7.991084 ACATGACTCATTTGAGAATTTCAGA 57.009 32.000 14.29 0.00 44.74 3.27
3626 4480 1.004862 TCCGGGTGGCAAATTACATGA 59.995 47.619 0.00 0.00 34.14 3.07
3728 4582 7.420002 ACATGATATCATTGAATTCCACAACG 58.580 34.615 15.74 2.36 33.61 4.10
3757 4611 7.769044 GGAGTAGCATTTAGTTCCAGAATAACA 59.231 37.037 0.00 0.00 0.00 2.41
3814 4668 6.145048 CCAGCAGTGAAAGAATCATTTTGAAC 59.855 38.462 0.00 0.00 40.97 3.18
3870 4767 3.616379 GTCAGAGATACAGCAAAGCACTC 59.384 47.826 0.00 0.00 0.00 3.51
3902 4799 2.996621 CCGTCAACAAAACCAGCAAAAA 59.003 40.909 0.00 0.00 0.00 1.94
3927 4824 1.204467 GCTGCAGAGAACAGTAGCTCT 59.796 52.381 20.43 0.96 41.95 4.09
3941 4838 3.928005 ATCCCCATGATATAGCTGCAG 57.072 47.619 10.11 10.11 0.00 4.41
3942 4839 4.365368 AGTATCCCCATGATATAGCTGCA 58.635 43.478 1.02 0.00 38.21 4.41
3962 4859 2.548067 CCTCAAACGTACAGCCTGAAGT 60.548 50.000 0.00 0.00 0.00 3.01
4000 4897 6.373005 TTTGGAATCACTCAGATCAAGGTA 57.627 37.500 0.00 0.00 35.39 3.08
4029 4926 6.595716 GCACTCCATTATTTGTTCTCTGTACT 59.404 38.462 0.00 0.00 0.00 2.73
4030 4927 6.371548 TGCACTCCATTATTTGTTCTCTGTAC 59.628 38.462 0.00 0.00 0.00 2.90
4031 4928 6.472016 TGCACTCCATTATTTGTTCTCTGTA 58.528 36.000 0.00 0.00 0.00 2.74
4032 4929 5.316167 TGCACTCCATTATTTGTTCTCTGT 58.684 37.500 0.00 0.00 0.00 3.41
4033 4930 5.885230 TGCACTCCATTATTTGTTCTCTG 57.115 39.130 0.00 0.00 0.00 3.35
4034 4931 5.105997 GCTTGCACTCCATTATTTGTTCTCT 60.106 40.000 0.00 0.00 0.00 3.10
4035 4932 5.098211 GCTTGCACTCCATTATTTGTTCTC 58.902 41.667 0.00 0.00 0.00 2.87
4036 4933 4.768968 AGCTTGCACTCCATTATTTGTTCT 59.231 37.500 0.00 0.00 0.00 3.01
4037 4934 4.860907 CAGCTTGCACTCCATTATTTGTTC 59.139 41.667 0.00 0.00 0.00 3.18
4038 4935 4.322198 CCAGCTTGCACTCCATTATTTGTT 60.322 41.667 0.00 0.00 0.00 2.83
4039 4936 3.194116 CCAGCTTGCACTCCATTATTTGT 59.806 43.478 0.00 0.00 0.00 2.83
4040 4937 3.429822 CCCAGCTTGCACTCCATTATTTG 60.430 47.826 0.00 0.00 0.00 2.32
4041 4938 2.762327 CCCAGCTTGCACTCCATTATTT 59.238 45.455 0.00 0.00 0.00 1.40
4043 4940 1.285962 ACCCAGCTTGCACTCCATTAT 59.714 47.619 0.00 0.00 0.00 1.28
4044 4941 0.698238 ACCCAGCTTGCACTCCATTA 59.302 50.000 0.00 0.00 0.00 1.90
4045 4942 0.698238 TACCCAGCTTGCACTCCATT 59.302 50.000 0.00 0.00 0.00 3.16
4046 4943 0.698238 TTACCCAGCTTGCACTCCAT 59.302 50.000 0.00 0.00 0.00 3.41
4047 4944 0.698238 ATTACCCAGCTTGCACTCCA 59.302 50.000 0.00 0.00 0.00 3.86
4048 4945 1.340017 TGATTACCCAGCTTGCACTCC 60.340 52.381 0.00 0.00 0.00 3.85
4093 4990 9.671279 TGTTTCTTCAGCATTCTAGATATGAAA 57.329 29.630 15.05 6.59 0.00 2.69
4117 5014 7.466746 ACAGCCAACTTAATGATGTAAATGT 57.533 32.000 0.00 0.00 0.00 2.71
4121 5018 9.899661 ACTTATACAGCCAACTTAATGATGTAA 57.100 29.630 0.00 0.00 31.00 2.41
4133 5030 7.767198 TCACAAGGTTATACTTATACAGCCAAC 59.233 37.037 0.00 0.00 0.00 3.77
4195 5092 2.029739 TGAGACGCTGTAAACATTCGGA 60.030 45.455 8.89 0.00 0.00 4.55
4196 5093 2.333926 TGAGACGCTGTAAACATTCGG 58.666 47.619 8.89 0.00 0.00 4.30
4197 5094 2.987149 ACTGAGACGCTGTAAACATTCG 59.013 45.455 0.00 4.16 0.00 3.34
4198 5095 4.031878 GCTACTGAGACGCTGTAAACATTC 59.968 45.833 0.00 0.00 31.62 2.67
4199 5096 3.927142 GCTACTGAGACGCTGTAAACATT 59.073 43.478 0.00 0.00 31.62 2.71
4200 5097 3.056821 TGCTACTGAGACGCTGTAAACAT 60.057 43.478 0.00 0.00 31.62 2.71
4201 5098 2.295070 TGCTACTGAGACGCTGTAAACA 59.705 45.455 0.00 0.00 31.62 2.83
4202 5099 2.942710 TGCTACTGAGACGCTGTAAAC 58.057 47.619 0.00 0.00 31.62 2.01
4203 5100 3.243602 TGTTGCTACTGAGACGCTGTAAA 60.244 43.478 0.00 0.00 31.62 2.01
4204 5101 2.295070 TGTTGCTACTGAGACGCTGTAA 59.705 45.455 0.00 0.00 31.62 2.41
4205 5102 1.883926 TGTTGCTACTGAGACGCTGTA 59.116 47.619 0.00 0.00 0.00 2.74
4240 5137 7.975616 GCCATTGTTAATGAAGTGTACATCAAT 59.024 33.333 0.00 0.00 41.46 2.57
4258 5155 2.742053 GACATGTGAGTACGCCATTGTT 59.258 45.455 1.15 0.00 0.00 2.83
4262 5159 1.134699 CCTGACATGTGAGTACGCCAT 60.135 52.381 11.54 0.00 0.00 4.40
4286 5183 4.379186 GCAGCGTAGACAGTGTTACTTCTA 60.379 45.833 0.00 0.00 0.00 2.10
4291 5188 1.986378 CTGCAGCGTAGACAGTGTTAC 59.014 52.381 0.00 1.67 0.00 2.50
4295 5192 3.468007 GCTGCAGCGTAGACAGTG 58.532 61.111 25.23 0.00 33.87 3.66
4331 5228 6.436847 AGATGTTGAGATCGAGACCATATGAT 59.563 38.462 3.65 0.00 0.00 2.45
4334 5231 6.041409 ACAAGATGTTGAGATCGAGACCATAT 59.959 38.462 9.96 0.00 37.10 1.78
4335 5232 5.360999 ACAAGATGTTGAGATCGAGACCATA 59.639 40.000 9.96 0.00 37.10 2.74
4367 5265 2.537214 CGATCAATATCCGCATCCATCG 59.463 50.000 0.00 0.00 0.00 3.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.