Multiple sequence alignment - TraesCS2B01G456400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G456400 chr2B 100.000 9773 0 0 1 9773 651350239 651360011 0.000000e+00 18048.0
1 TraesCS2B01G456400 chr2B 88.571 70 7 1 6810 6878 532079692 532079623 6.290000e-12 84.2
2 TraesCS2B01G456400 chr2A 94.389 2923 106 31 6866 9773 688625286 688622407 0.000000e+00 4436.0
3 TraesCS2B01G456400 chr2A 94.310 1775 70 17 3928 5681 688627226 688625462 0.000000e+00 2689.0
4 TraesCS2B01G456400 chr2A 95.923 1349 51 2 2135 3479 688628832 688627484 0.000000e+00 2183.0
5 TraesCS2B01G456400 chr2A 82.770 1538 93 83 2 1446 688631161 688629703 0.000000e+00 1214.0
6 TraesCS2B01G456400 chr2A 86.695 699 58 10 1465 2136 688629616 688628926 0.000000e+00 743.0
7 TraesCS2B01G456400 chr2A 96.386 249 9 0 3510 3758 688627483 688627235 2.540000e-110 411.0
8 TraesCS2B01G456400 chr2A 95.882 170 7 0 6643 6812 688625454 688625285 9.670000e-70 276.0
9 TraesCS2B01G456400 chr2D 95.172 2527 88 14 6866 9369 544878891 544881406 0.000000e+00 3960.0
10 TraesCS2B01G456400 chr2D 96.864 2296 59 7 1465 3758 544874691 544876975 0.000000e+00 3829.0
11 TraesCS2B01G456400 chr2D 96.707 1397 33 7 3920 5308 544876974 544878365 0.000000e+00 2313.0
12 TraesCS2B01G456400 chr2D 87.808 1501 65 53 1 1446 544873168 544874605 0.000000e+00 1650.0
13 TraesCS2B01G456400 chr2D 95.628 366 9 1 5347 5712 544878364 544878722 1.830000e-161 580.0
14 TraesCS2B01G456400 chr2D 96.755 339 8 1 9435 9773 544882007 544882342 6.630000e-156 562.0
15 TraesCS2B01G456400 chr2D 97.714 175 4 0 3750 3924 554128380 554128206 1.600000e-77 302.0
16 TraesCS2B01G456400 chr2D 97.661 171 2 1 6642 6812 544878724 544878892 9.600000e-75 292.0
17 TraesCS2B01G456400 chr3D 96.474 936 28 5 5712 6644 29694798 29693865 0.000000e+00 1541.0
18 TraesCS2B01G456400 chr3D 96.034 933 33 3 5712 6643 448747130 448746201 0.000000e+00 1515.0
19 TraesCS2B01G456400 chr3D 94.831 948 41 6 5702 6644 32345516 32346460 0.000000e+00 1472.0
20 TraesCS2B01G456400 chr3D 94.888 939 38 7 5710 6644 377922849 377923781 0.000000e+00 1459.0
21 TraesCS2B01G456400 chr3D 95.032 926 42 3 5710 6634 434914332 434915254 0.000000e+00 1452.0
22 TraesCS2B01G456400 chr3D 96.739 184 3 3 3747 3928 7607383 7607565 4.440000e-78 303.0
23 TraesCS2B01G456400 chr3D 84.615 91 4 4 6803 6885 104086908 104086996 2.260000e-11 82.4
24 TraesCS2B01G456400 chr4D 95.396 934 37 5 5712 6643 391832491 391833420 0.000000e+00 1482.0
25 TraesCS2B01G456400 chr7D 95.662 922 34 6 5712 6632 204619684 204618768 0.000000e+00 1476.0
26 TraesCS2B01G456400 chr7D 95.161 930 39 4 5715 6643 148303595 148304519 0.000000e+00 1463.0
27 TraesCS2B01G456400 chr7D 90.654 214 11 9 3723 3929 546102318 546102529 9.670000e-70 276.0
28 TraesCS2B01G456400 chr1D 94.759 935 42 5 5713 6644 95189202 95190132 0.000000e+00 1448.0
29 TraesCS2B01G456400 chr1D 96.648 179 3 3 3757 3933 178466306 178466483 2.670000e-75 294.0
30 TraesCS2B01G456400 chr1D 96.591 176 6 0 3747 3922 238940206 238940381 9.600000e-75 292.0
31 TraesCS2B01G456400 chr7A 90.347 404 31 6 4684 5081 47399581 47399982 3.130000e-144 523.0
32 TraesCS2B01G456400 chr7A 90.625 64 4 2 6808 6869 713130252 713130315 6.290000e-12 84.2
33 TraesCS2B01G456400 chr6D 97.701 174 4 0 3751 3924 392897145 392896972 5.740000e-77 300.0
34 TraesCS2B01G456400 chr6D 97.126 174 5 0 3748 3921 406391532 406391359 2.670000e-75 294.0
35 TraesCS2B01G456400 chr6D 89.706 68 2 3 6807 6869 457728078 457728145 2.260000e-11 82.4
36 TraesCS2B01G456400 chr3B 96.610 177 4 2 3750 3925 62970101 62969926 9.600000e-75 292.0
37 TraesCS2B01G456400 chr5D 94.624 186 8 2 3745 3929 388330739 388330555 4.470000e-73 287.0
38 TraesCS2B01G456400 chr5D 93.443 61 0 3 6811 6867 553059297 553059357 4.860000e-13 87.9
39 TraesCS2B01G456400 chr1A 95.238 63 0 2 6811 6870 540148899 540148837 8.080000e-16 97.1
40 TraesCS2B01G456400 chr6A 96.491 57 1 1 6811 6867 182304825 182304770 1.050000e-14 93.5
41 TraesCS2B01G456400 chr6B 93.220 59 2 1 6810 6868 211160489 211160545 1.750000e-12 86.1
42 TraesCS2B01G456400 chr1B 92.063 63 1 2 6811 6869 660597059 660597121 1.750000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G456400 chr2B 651350239 651360011 9772 False 18048.000000 18048 100.000000 1 9773 1 chr2B.!!$F1 9772
1 TraesCS2B01G456400 chr2A 688622407 688631161 8754 True 1707.428571 4436 92.336429 2 9773 7 chr2A.!!$R1 9771
2 TraesCS2B01G456400 chr2D 544873168 544882342 9174 False 1883.714286 3960 95.227857 1 9773 7 chr2D.!!$F1 9772
3 TraesCS2B01G456400 chr3D 29693865 29694798 933 True 1541.000000 1541 96.474000 5712 6644 1 chr3D.!!$R1 932
4 TraesCS2B01G456400 chr3D 448746201 448747130 929 True 1515.000000 1515 96.034000 5712 6643 1 chr3D.!!$R2 931
5 TraesCS2B01G456400 chr3D 32345516 32346460 944 False 1472.000000 1472 94.831000 5702 6644 1 chr3D.!!$F2 942
6 TraesCS2B01G456400 chr3D 377922849 377923781 932 False 1459.000000 1459 94.888000 5710 6644 1 chr3D.!!$F4 934
7 TraesCS2B01G456400 chr3D 434914332 434915254 922 False 1452.000000 1452 95.032000 5710 6634 1 chr3D.!!$F5 924
8 TraesCS2B01G456400 chr4D 391832491 391833420 929 False 1482.000000 1482 95.396000 5712 6643 1 chr4D.!!$F1 931
9 TraesCS2B01G456400 chr7D 204618768 204619684 916 True 1476.000000 1476 95.662000 5712 6632 1 chr7D.!!$R1 920
10 TraesCS2B01G456400 chr7D 148303595 148304519 924 False 1463.000000 1463 95.161000 5715 6643 1 chr7D.!!$F1 928
11 TraesCS2B01G456400 chr1D 95189202 95190132 930 False 1448.000000 1448 94.759000 5713 6644 1 chr1D.!!$F1 931

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
751 846 1.271597 GGAATCCCAATCCGATCCCAG 60.272 57.143 0.00 0.00 0.00 4.45 F
1240 1352 0.572590 GGATCGTCGAATTGCTGTCG 59.427 55.000 0.00 0.00 39.88 4.35 F
1822 2036 0.986270 TTATCGTGTAGTGCGTTGCG 59.014 50.000 0.00 0.00 0.00 4.85 F
1948 2162 1.474077 GCCCACAATGATGGAGTTGAC 59.526 52.381 3.92 0.00 43.02 3.18 F
3771 4106 2.244252 ACATACTACTCCCTCCGTTCCT 59.756 50.000 0.00 0.00 0.00 3.36 F
4823 5163 1.462616 TTGCCATACATGCTGGTGTC 58.537 50.000 14.54 1.73 36.10 3.67 F
5428 5788 1.915489 AGACCCATGTGCAAGGACATA 59.085 47.619 6.89 0.00 34.69 2.29 F
5961 6325 0.047176 TCTCCTCCCTCTCCCTCTCT 59.953 60.000 0.00 0.00 0.00 3.10 F
7509 7896 0.320771 CTACCAGATGCATACCCCGC 60.321 60.000 0.00 0.00 0.00 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1822 2036 1.591863 GATGTCCGCCGTTAGCCTC 60.592 63.158 0.00 0.0 38.78 4.70 R
3131 3464 3.519510 ACCTCAAGCAATAGTTAGCCAGA 59.480 43.478 0.00 0.0 0.00 3.86 R
3800 4135 2.742348 ACATCCGTATGTGGTAGTCCA 58.258 47.619 0.00 0.0 44.79 4.02 R
3856 4191 2.139323 AGTGGCTACATACGGAGACA 57.861 50.000 2.02 0.0 0.00 3.41 R
4884 5224 0.593128 AGCACAGCAACGCCTAAAAG 59.407 50.000 0.00 0.0 0.00 2.27 R
5961 6325 2.486203 GAGTGTGAGAGAAAGCGAGAGA 59.514 50.000 0.00 0.0 0.00 3.10 R
6750 7126 3.149196 AGTGTACACAGGGAGCATTTTG 58.851 45.455 27.06 0.0 0.00 2.44 R
7547 7934 1.141657 GAGCCATGAATGCCTCCACTA 59.858 52.381 0.00 0.0 0.00 2.74 R
9230 9634 0.661020 AACCGCGGAACTTCAACAAG 59.339 50.000 35.90 0.0 35.50 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 108 2.726180 GATACATCGCGCGCGTCT 60.726 61.111 46.54 33.80 40.74 4.18
123 129 1.536907 TCTCCCCCGTGCTAACCAA 60.537 57.895 0.00 0.00 0.00 3.67
133 139 2.732500 CGTGCTAACCAATGACACGTAA 59.267 45.455 5.73 0.00 46.56 3.18
168 174 2.441750 ACACACCCACAATGAGGTTACT 59.558 45.455 0.00 0.00 32.72 2.24
169 175 2.813754 CACACCCACAATGAGGTTACTG 59.186 50.000 0.00 0.00 32.72 2.74
202 208 2.889503 CCAGCGCAGTCAGCTAGC 60.890 66.667 11.47 6.62 44.06 3.42
203 209 2.125793 CAGCGCAGTCAGCTAGCA 60.126 61.111 18.83 0.00 44.06 3.49
204 210 2.165940 CAGCGCAGTCAGCTAGCAG 61.166 63.158 18.83 9.54 44.06 4.24
219 225 5.638657 CAGCTAGCAGGATAGAATAAGCAAG 59.361 44.000 18.83 0.00 0.00 4.01
220 226 4.391523 GCTAGCAGGATAGAATAAGCAAGC 59.608 45.833 10.63 0.00 0.00 4.01
223 229 4.820716 AGCAGGATAGAATAAGCAAGCAAG 59.179 41.667 0.00 0.00 0.00 4.01
225 231 5.049543 GCAGGATAGAATAAGCAAGCAAGAG 60.050 44.000 0.00 0.00 0.00 2.85
226 232 6.054295 CAGGATAGAATAAGCAAGCAAGAGT 58.946 40.000 0.00 0.00 0.00 3.24
229 235 7.070571 AGGATAGAATAAGCAAGCAAGAGTAGT 59.929 37.037 0.00 0.00 0.00 2.73
233 239 3.662247 AAGCAAGCAAGAGTAGTACGT 57.338 42.857 0.00 0.00 0.00 3.57
234 240 4.778534 AAGCAAGCAAGAGTAGTACGTA 57.221 40.909 0.00 0.00 0.00 3.57
235 241 4.358494 AGCAAGCAAGAGTAGTACGTAG 57.642 45.455 0.00 0.00 0.00 3.51
282 319 3.525609 TGGTTGGTGCTTATCTTCCCATA 59.474 43.478 0.00 0.00 0.00 2.74
288 325 6.354130 TGGTGCTTATCTTCCCATAAACTAC 58.646 40.000 0.00 0.00 0.00 2.73
296 336 9.851686 TTATCTTCCCATAAACTACGAGTAGTA 57.148 33.333 15.33 2.75 44.96 1.82
365 405 1.835494 TCCACACGGGAAACAAAACA 58.165 45.000 0.00 0.00 44.80 2.83
421 472 6.931281 AGAAAAGAAAAGCCAAGGAAAATAGC 59.069 34.615 0.00 0.00 0.00 2.97
447 499 2.920912 AGGAACACGAGCGGGGAA 60.921 61.111 0.00 0.00 0.00 3.97
576 643 3.487576 CCGAATCGGGGATCCAAAA 57.512 52.632 14.91 0.00 44.15 2.44
676 771 3.426963 CCGCCGTTGTTGCAGTAATTAAT 60.427 43.478 0.00 0.00 0.00 1.40
677 772 4.162812 CGCCGTTGTTGCAGTAATTAATT 58.837 39.130 5.89 5.89 0.00 1.40
719 814 4.473520 CTGCCGAGCCCAATCCGT 62.474 66.667 0.00 0.00 0.00 4.69
722 817 4.891727 CCGAGCCCAATCCGTCGG 62.892 72.222 4.39 4.39 45.48 4.79
723 818 4.143333 CGAGCCCAATCCGTCGGT 62.143 66.667 11.88 0.00 0.00 4.69
725 820 4.143333 AGCCCAATCCGTCGGTCG 62.143 66.667 11.88 0.73 39.52 4.79
751 846 1.271597 GGAATCCCAATCCGATCCCAG 60.272 57.143 0.00 0.00 0.00 4.45
786 881 2.108362 GGGATTACTGCCCGTCCG 59.892 66.667 0.00 0.00 35.50 4.79
888 1000 2.407616 CTGTGATCGTCGCCGCTA 59.592 61.111 0.00 0.00 0.00 4.26
1164 1276 1.268896 CGCATAAGCAAGCTTCATGGG 60.269 52.381 11.05 15.45 42.27 4.00
1200 1312 1.757699 GTACGCCTCATTCTCCTCCTT 59.242 52.381 0.00 0.00 0.00 3.36
1201 1313 0.827368 ACGCCTCATTCTCCTCCTTC 59.173 55.000 0.00 0.00 0.00 3.46
1203 1315 1.202510 CGCCTCATTCTCCTCCTTCTG 60.203 57.143 0.00 0.00 0.00 3.02
1204 1316 1.474855 GCCTCATTCTCCTCCTTCTGC 60.475 57.143 0.00 0.00 0.00 4.26
1205 1317 2.117865 CCTCATTCTCCTCCTTCTGCT 58.882 52.381 0.00 0.00 0.00 4.24
1207 1319 3.033184 CTCATTCTCCTCCTTCTGCTCT 58.967 50.000 0.00 0.00 0.00 4.09
1208 1320 4.214310 CTCATTCTCCTCCTTCTGCTCTA 58.786 47.826 0.00 0.00 0.00 2.43
1209 1321 4.813809 TCATTCTCCTCCTTCTGCTCTAT 58.186 43.478 0.00 0.00 0.00 1.98
1210 1322 4.832266 TCATTCTCCTCCTTCTGCTCTATC 59.168 45.833 0.00 0.00 0.00 2.08
1211 1323 4.534647 TTCTCCTCCTTCTGCTCTATCT 57.465 45.455 0.00 0.00 0.00 1.98
1222 1334 1.757118 TGCTCTATCTGTTCCTTCCGG 59.243 52.381 0.00 0.00 0.00 5.14
1233 1345 1.108776 TCCTTCCGGATCGTCGAATT 58.891 50.000 4.15 0.00 33.30 2.17
1240 1352 0.572590 GGATCGTCGAATTGCTGTCG 59.427 55.000 0.00 0.00 39.88 4.35
1245 1357 1.286501 GTCGAATTGCTGTCGCCATA 58.713 50.000 0.00 0.00 38.39 2.74
1248 1360 1.806247 CGAATTGCTGTCGCCATAGGA 60.806 52.381 0.00 0.00 34.43 2.94
1249 1361 1.869767 GAATTGCTGTCGCCATAGGAG 59.130 52.381 0.00 0.00 34.43 3.69
1367 1487 4.013267 AGCATGTTTAGTCAACTGCTCT 57.987 40.909 7.77 0.00 41.87 4.09
1395 1515 3.617284 TCGTCTGTATGAACTAGCAGGA 58.383 45.455 0.00 0.00 0.00 3.86
1423 1543 6.609212 AGAGTGCTGGAGTTTCATAGAAGATA 59.391 38.462 0.00 0.00 0.00 1.98
1529 1718 1.213296 TCAGCATTCCCCTAAGTCCC 58.787 55.000 0.00 0.00 0.00 4.46
1533 1722 2.175715 AGCATTCCCCTAAGTCCCAATC 59.824 50.000 0.00 0.00 0.00 2.67
1580 1769 3.423344 TTTTTGCGGGGTTCAGCTA 57.577 47.368 0.00 0.00 0.00 3.32
1669 1882 7.665145 ACTTTTAAGCAACATTTATGGGCAAAT 59.335 29.630 10.05 0.00 35.52 2.32
1762 1976 9.042008 TGTCTCACTTATTTGTTACAACTCTTC 57.958 33.333 0.00 0.00 0.00 2.87
1780 1994 5.352569 ACTCTTCTTCCATATGCTTTTGTCG 59.647 40.000 0.00 0.00 0.00 4.35
1787 2001 2.873170 TATGCTTTTGTCGTTCAGCG 57.127 45.000 0.00 0.00 43.01 5.18
1822 2036 0.986270 TTATCGTGTAGTGCGTTGCG 59.014 50.000 0.00 0.00 0.00 4.85
1948 2162 1.474077 GCCCACAATGATGGAGTTGAC 59.526 52.381 3.92 0.00 43.02 3.18
2045 2281 6.073447 TCCCCATTAGCTTTGTTTCATCTA 57.927 37.500 0.00 0.00 0.00 1.98
2204 2535 9.846248 AAGTATGTTCATCTTGAAATTTGCTAC 57.154 29.630 0.00 0.00 38.22 3.58
2293 2624 2.663119 GCTTCCAATTTTGATGTCACGC 59.337 45.455 0.00 0.00 0.00 5.34
2386 2717 3.306571 GGCTGAGCATGACTAGCATATCA 60.307 47.826 6.82 2.64 37.89 2.15
2747 3080 4.808558 TGTGTATTGCCTTTGAAATGCTC 58.191 39.130 6.73 0.00 0.00 4.26
2785 3118 9.334947 GTAAGTTTACTTCTGTAGGACCTTTTT 57.665 33.333 0.00 0.00 37.40 1.94
3663 3998 4.090027 AGGACTACCCTTATTTCCTGGT 57.910 45.455 0.00 0.00 44.85 4.00
3762 4097 9.439500 CTAGTTCTGTATCTACATACTACTCCC 57.561 40.741 7.72 0.00 36.55 4.30
3764 4099 8.158789 AGTTCTGTATCTACATACTACTCCCTC 58.841 40.741 4.40 0.00 36.55 4.30
3766 4101 5.802465 TGTATCTACATACTACTCCCTCCG 58.198 45.833 0.00 0.00 36.55 4.63
3767 4102 4.997545 ATCTACATACTACTCCCTCCGT 57.002 45.455 0.00 0.00 0.00 4.69
3768 4103 4.785346 TCTACATACTACTCCCTCCGTT 57.215 45.455 0.00 0.00 0.00 4.44
3769 4104 4.712476 TCTACATACTACTCCCTCCGTTC 58.288 47.826 0.00 0.00 0.00 3.95
3770 4105 2.664015 ACATACTACTCCCTCCGTTCC 58.336 52.381 0.00 0.00 0.00 3.62
3771 4106 2.244252 ACATACTACTCCCTCCGTTCCT 59.756 50.000 0.00 0.00 0.00 3.36
3772 4107 3.461085 ACATACTACTCCCTCCGTTCCTA 59.539 47.826 0.00 0.00 0.00 2.94
3773 4108 4.079558 ACATACTACTCCCTCCGTTCCTAA 60.080 45.833 0.00 0.00 0.00 2.69
3774 4109 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
3775 4110 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
3776 4111 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
3777 4112 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
3778 4113 6.141790 ACTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
3779 4114 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
3780 4115 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
3781 4116 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
3782 4117 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
3783 4118 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
3784 4119 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
3785 4120 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
3786 4121 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
3787 4122 8.520351 CCTCCGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
3804 4139 9.965824 TTGTCTTTTTAGAGATTTCAAATGGAC 57.034 29.630 0.00 0.00 0.00 4.02
3805 4140 9.354673 TGTCTTTTTAGAGATTTCAAATGGACT 57.645 29.630 0.00 0.00 0.00 3.85
3821 4156 3.900971 TGGACTACCACATACGGATGTA 58.099 45.455 14.23 0.00 44.82 2.29
3822 4157 4.476297 TGGACTACCACATACGGATGTAT 58.524 43.478 14.23 7.46 44.82 2.29
3823 4158 5.633117 TGGACTACCACATACGGATGTATA 58.367 41.667 14.23 8.27 44.82 1.47
3824 4159 6.250711 TGGACTACCACATACGGATGTATAT 58.749 40.000 14.23 4.37 44.82 0.86
3825 4160 7.404481 TGGACTACCACATACGGATGTATATA 58.596 38.462 14.23 5.36 44.82 0.86
3826 4161 7.555195 TGGACTACCACATACGGATGTATATAG 59.445 40.741 14.23 16.35 44.82 1.31
3827 4162 7.772292 GGACTACCACATACGGATGTATATAGA 59.228 40.741 22.62 5.04 44.82 1.98
3828 4163 8.503458 ACTACCACATACGGATGTATATAGAC 57.497 38.462 22.62 0.00 44.82 2.59
3829 4164 8.105197 ACTACCACATACGGATGTATATAGACA 58.895 37.037 22.62 2.07 44.82 3.41
3830 4165 7.956328 ACCACATACGGATGTATATAGACAT 57.044 36.000 14.23 12.70 44.82 3.06
3832 4167 9.642343 ACCACATACGGATGTATATAGACATAT 57.358 33.333 14.23 5.08 44.82 1.78
3862 4197 6.402222 AGTGTAGATTCACTCATTTGTCTCC 58.598 40.000 0.00 0.00 44.07 3.71
3863 4198 5.289675 GTGTAGATTCACTCATTTGTCTCCG 59.710 44.000 0.00 0.00 35.68 4.63
3864 4199 4.543590 AGATTCACTCATTTGTCTCCGT 57.456 40.909 0.00 0.00 0.00 4.69
3865 4200 5.661056 AGATTCACTCATTTGTCTCCGTA 57.339 39.130 0.00 0.00 0.00 4.02
3866 4201 6.227298 AGATTCACTCATTTGTCTCCGTAT 57.773 37.500 0.00 0.00 0.00 3.06
3867 4202 6.045318 AGATTCACTCATTTGTCTCCGTATG 58.955 40.000 0.00 0.00 0.00 2.39
3868 4203 4.801330 TCACTCATTTGTCTCCGTATGT 57.199 40.909 0.00 0.00 0.00 2.29
3869 4204 5.907866 TCACTCATTTGTCTCCGTATGTA 57.092 39.130 0.00 0.00 0.00 2.29
3870 4205 5.891451 TCACTCATTTGTCTCCGTATGTAG 58.109 41.667 0.00 0.00 0.00 2.74
3871 4206 4.504461 CACTCATTTGTCTCCGTATGTAGC 59.496 45.833 0.00 0.00 0.00 3.58
3872 4207 4.051922 CTCATTTGTCTCCGTATGTAGCC 58.948 47.826 0.00 0.00 0.00 3.93
3873 4208 3.449377 TCATTTGTCTCCGTATGTAGCCA 59.551 43.478 0.00 0.00 0.00 4.75
3874 4209 2.953466 TTGTCTCCGTATGTAGCCAC 57.047 50.000 0.00 0.00 0.00 5.01
3875 4210 2.139323 TGTCTCCGTATGTAGCCACT 57.861 50.000 0.00 0.00 0.00 4.00
3876 4211 2.453521 TGTCTCCGTATGTAGCCACTT 58.546 47.619 0.00 0.00 0.00 3.16
3877 4212 2.165641 TGTCTCCGTATGTAGCCACTTG 59.834 50.000 0.00 0.00 0.00 3.16
3878 4213 2.165845 GTCTCCGTATGTAGCCACTTGT 59.834 50.000 0.00 0.00 0.00 3.16
3879 4214 2.829720 TCTCCGTATGTAGCCACTTGTT 59.170 45.455 0.00 0.00 0.00 2.83
3880 4215 2.930040 CTCCGTATGTAGCCACTTGTTG 59.070 50.000 0.00 0.00 0.00 3.33
3881 4216 2.563620 TCCGTATGTAGCCACTTGTTGA 59.436 45.455 0.00 0.00 0.00 3.18
3882 4217 3.007074 TCCGTATGTAGCCACTTGTTGAA 59.993 43.478 0.00 0.00 0.00 2.69
3883 4218 3.749088 CCGTATGTAGCCACTTGTTGAAA 59.251 43.478 0.00 0.00 0.00 2.69
3884 4219 4.394920 CCGTATGTAGCCACTTGTTGAAAT 59.605 41.667 0.00 0.00 0.00 2.17
3885 4220 5.447279 CCGTATGTAGCCACTTGTTGAAATC 60.447 44.000 0.00 0.00 0.00 2.17
3886 4221 5.351465 CGTATGTAGCCACTTGTTGAAATCT 59.649 40.000 0.00 0.00 0.00 2.40
3887 4222 5.886960 ATGTAGCCACTTGTTGAAATCTC 57.113 39.130 0.00 0.00 0.00 2.75
3888 4223 4.973168 TGTAGCCACTTGTTGAAATCTCT 58.027 39.130 0.00 0.00 0.00 3.10
3889 4224 6.109156 TGTAGCCACTTGTTGAAATCTCTA 57.891 37.500 0.00 0.00 0.00 2.43
3890 4225 6.166279 TGTAGCCACTTGTTGAAATCTCTAG 58.834 40.000 0.00 0.00 0.00 2.43
3891 4226 5.489792 AGCCACTTGTTGAAATCTCTAGA 57.510 39.130 0.00 0.00 0.00 2.43
3892 4227 5.869579 AGCCACTTGTTGAAATCTCTAGAA 58.130 37.500 0.00 0.00 0.00 2.10
3893 4228 6.299141 AGCCACTTGTTGAAATCTCTAGAAA 58.701 36.000 0.00 0.00 0.00 2.52
3894 4229 6.429385 AGCCACTTGTTGAAATCTCTAGAAAG 59.571 38.462 0.00 0.00 0.00 2.62
3895 4230 6.428159 GCCACTTGTTGAAATCTCTAGAAAGA 59.572 38.462 0.00 0.00 0.00 2.52
3896 4231 7.572168 GCCACTTGTTGAAATCTCTAGAAAGAC 60.572 40.741 0.00 0.00 0.00 3.01
3897 4232 7.442364 CCACTTGTTGAAATCTCTAGAAAGACA 59.558 37.037 0.00 0.00 0.00 3.41
3898 4233 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
3899 4234 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
3912 4247 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
3913 4248 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
3914 4249 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
3915 4250 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
3916 4251 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
3917 4252 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
3918 4253 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
3919 4254 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
3920 4255 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
3921 4256 7.072076 ACAAATATTTAGGAACGGAGGGAGTAT 59.928 37.037 0.00 0.00 0.00 2.12
3922 4257 7.628501 AATATTTAGGAACGGAGGGAGTATT 57.371 36.000 0.00 0.00 0.00 1.89
3923 4258 8.731591 AATATTTAGGAACGGAGGGAGTATTA 57.268 34.615 0.00 0.00 0.00 0.98
3924 4259 8.912614 ATATTTAGGAACGGAGGGAGTATTAT 57.087 34.615 0.00 0.00 0.00 1.28
3925 4260 6.415206 TTTAGGAACGGAGGGAGTATTATG 57.585 41.667 0.00 0.00 0.00 1.90
3926 4261 3.924922 AGGAACGGAGGGAGTATTATGT 58.075 45.455 0.00 0.00 0.00 2.29
3978 4313 9.066892 TCTGCTGAGTTTAATGTTGTTAATCTT 57.933 29.630 0.00 0.00 0.00 2.40
3979 4314 9.121517 CTGCTGAGTTTAATGTTGTTAATCTTG 57.878 33.333 0.00 0.00 0.00 3.02
3995 4331 8.357402 TGTTAATCTTGCCCTTTTTAGTTCTTC 58.643 33.333 0.00 0.00 0.00 2.87
4047 4383 7.467267 CGAGCTTTACCATGTTATAATGCTTGT 60.467 37.037 16.44 3.39 40.14 3.16
4048 4384 8.066612 AGCTTTACCATGTTATAATGCTTGTT 57.933 30.769 12.48 0.00 38.12 2.83
4124 4460 4.945246 TGCTAAGGGAAGCTAAGAATACG 58.055 43.478 0.00 0.00 43.19 3.06
4342 4678 3.119137 CCAAAAGGCCGAAATTAGGGAAG 60.119 47.826 0.00 0.00 0.00 3.46
4796 5136 3.954904 TCTGCTCCCTGTCAGTATAGTTC 59.045 47.826 0.00 0.00 0.00 3.01
4823 5163 1.462616 TTGCCATACATGCTGGTGTC 58.537 50.000 14.54 1.73 36.10 3.67
4849 5189 7.255139 CCCTCTTGAGTTGTAATTTCGTCTTTT 60.255 37.037 0.00 0.00 0.00 2.27
4865 5205 5.175491 TCGTCTTTTGAAAGCAATGCATTTC 59.825 36.000 9.83 14.21 35.99 2.17
4884 5224 4.628963 TTCGCCCCTATAAAGGTTATCC 57.371 45.455 0.00 0.00 41.89 2.59
4945 5294 7.008901 CACGAACGATAAACTAGATGCAACTTA 59.991 37.037 0.30 0.00 0.00 2.24
5135 5484 5.468072 TGATTCAGAGACAGAAAAAGCAGAC 59.532 40.000 0.00 0.00 0.00 3.51
5277 5626 8.364142 TGTAAAGGTTGGGACTTCAATATTTTG 58.636 33.333 0.00 0.00 0.00 2.44
5320 5669 9.685276 ATTATGTCAGGTTAAGTTGATGAATCA 57.315 29.630 0.00 0.00 34.44 2.57
5428 5788 1.915489 AGACCCATGTGCAAGGACATA 59.085 47.619 6.89 0.00 34.69 2.29
5441 5801 7.176515 TGTGCAAGGACATAATTTGTACAATCT 59.823 33.333 9.56 2.19 42.18 2.40
5698 6058 6.907212 GGCTGTGACAAATAAACTTATCATCG 59.093 38.462 0.00 0.00 0.00 3.84
5770 6131 5.950758 AAACACAACACACACTCTTAACA 57.049 34.783 0.00 0.00 0.00 2.41
5960 6324 0.478507 CTCTCCTCCCTCTCCCTCTC 59.521 65.000 0.00 0.00 0.00 3.20
5961 6325 0.047176 TCTCCTCCCTCTCCCTCTCT 59.953 60.000 0.00 0.00 0.00 3.10
6047 6411 5.535030 AGGTATGCATGTGTAGTTCTCGATA 59.465 40.000 10.16 0.00 0.00 2.92
6116 6480 0.373716 CGCCGCCTGTATGAAAGAAC 59.626 55.000 0.00 0.00 0.00 3.01
6568 6944 2.086869 ACTGCGGGTTGATTTCATGAG 58.913 47.619 0.00 0.00 0.00 2.90
6750 7126 8.223769 CACTAATCGACAAACCTATCAATATGC 58.776 37.037 0.00 0.00 0.00 3.14
6810 7186 7.660617 CAGGTTGCATCATTGATCTTAGTAGAT 59.339 37.037 0.00 0.00 43.85 1.98
6811 7187 8.874156 AGGTTGCATCATTGATCTTAGTAGATA 58.126 33.333 0.00 0.00 41.23 1.98
6812 7188 8.930760 GGTTGCATCATTGATCTTAGTAGATAC 58.069 37.037 0.00 0.00 41.23 2.24
6813 7189 9.703892 GTTGCATCATTGATCTTAGTAGATACT 57.296 33.333 0.00 0.00 41.23 2.12
6814 7190 9.920133 TTGCATCATTGATCTTAGTAGATACTC 57.080 33.333 0.00 0.00 41.23 2.59
6815 7191 8.526978 TGCATCATTGATCTTAGTAGATACTCC 58.473 37.037 0.00 0.00 41.23 3.85
6816 7192 7.978975 GCATCATTGATCTTAGTAGATACTCCC 59.021 40.741 0.00 0.00 41.23 4.30
6817 7193 9.253832 CATCATTGATCTTAGTAGATACTCCCT 57.746 37.037 0.00 0.00 41.23 4.20
6818 7194 8.871629 TCATTGATCTTAGTAGATACTCCCTC 57.128 38.462 0.00 0.00 41.23 4.30
6819 7195 7.891183 TCATTGATCTTAGTAGATACTCCCTCC 59.109 40.741 0.00 0.00 41.23 4.30
6820 7196 5.806818 TGATCTTAGTAGATACTCCCTCCG 58.193 45.833 0.00 0.00 41.23 4.63
6821 7197 5.310068 TGATCTTAGTAGATACTCCCTCCGT 59.690 44.000 0.00 0.00 41.23 4.69
6822 7198 5.643421 TCTTAGTAGATACTCCCTCCGTT 57.357 43.478 0.00 0.00 37.73 4.44
6823 7199 5.619220 TCTTAGTAGATACTCCCTCCGTTC 58.381 45.833 0.00 0.00 37.73 3.95
6824 7200 3.226682 AGTAGATACTCCCTCCGTTCC 57.773 52.381 0.00 0.00 0.00 3.62
6825 7201 2.512896 AGTAGATACTCCCTCCGTTCCA 59.487 50.000 0.00 0.00 0.00 3.53
6826 7202 2.544844 AGATACTCCCTCCGTTCCAA 57.455 50.000 0.00 0.00 0.00 3.53
6827 7203 2.829023 AGATACTCCCTCCGTTCCAAA 58.171 47.619 0.00 0.00 0.00 3.28
6828 7204 3.178865 AGATACTCCCTCCGTTCCAAAA 58.821 45.455 0.00 0.00 0.00 2.44
6829 7205 3.780850 AGATACTCCCTCCGTTCCAAAAT 59.219 43.478 0.00 0.00 0.00 1.82
6830 7206 4.966805 AGATACTCCCTCCGTTCCAAAATA 59.033 41.667 0.00 0.00 0.00 1.40
6831 7207 5.607171 AGATACTCCCTCCGTTCCAAAATAT 59.393 40.000 0.00 0.00 0.00 1.28
6832 7208 6.785963 AGATACTCCCTCCGTTCCAAAATATA 59.214 38.462 0.00 0.00 0.00 0.86
6833 7209 5.703730 ACTCCCTCCGTTCCAAAATATAA 57.296 39.130 0.00 0.00 0.00 0.98
6834 7210 6.069705 ACTCCCTCCGTTCCAAAATATAAA 57.930 37.500 0.00 0.00 0.00 1.40
6835 7211 6.120220 ACTCCCTCCGTTCCAAAATATAAAG 58.880 40.000 0.00 0.00 0.00 1.85
6836 7212 6.069705 TCCCTCCGTTCCAAAATATAAAGT 57.930 37.500 0.00 0.00 0.00 2.66
6837 7213 6.486941 TCCCTCCGTTCCAAAATATAAAGTT 58.513 36.000 0.00 0.00 0.00 2.66
6838 7214 6.376018 TCCCTCCGTTCCAAAATATAAAGTTG 59.624 38.462 0.00 0.00 0.00 3.16
6839 7215 6.405397 CCCTCCGTTCCAAAATATAAAGTTGG 60.405 42.308 6.23 6.23 42.70 3.77
6840 7216 6.405397 CCTCCGTTCCAAAATATAAAGTTGGG 60.405 42.308 10.79 0.00 41.82 4.12
6841 7217 6.011481 TCCGTTCCAAAATATAAAGTTGGGT 58.989 36.000 10.79 0.00 41.82 4.51
6842 7218 6.151480 TCCGTTCCAAAATATAAAGTTGGGTC 59.849 38.462 10.79 5.70 41.82 4.46
6843 7219 6.071840 CCGTTCCAAAATATAAAGTTGGGTCA 60.072 38.462 10.79 0.00 41.82 4.02
6844 7220 7.363443 CCGTTCCAAAATATAAAGTTGGGTCAT 60.363 37.037 10.79 0.00 41.82 3.06
6845 7221 7.700656 CGTTCCAAAATATAAAGTTGGGTCATC 59.299 37.037 10.79 0.00 41.82 2.92
6846 7222 8.749354 GTTCCAAAATATAAAGTTGGGTCATCT 58.251 33.333 10.79 0.00 41.82 2.90
6847 7223 9.983024 TTCCAAAATATAAAGTTGGGTCATCTA 57.017 29.630 10.79 0.00 41.82 1.98
6855 7231 8.893563 ATAAAGTTGGGTCATCTATTTTGGAA 57.106 30.769 0.00 0.00 0.00 3.53
6856 7232 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
6857 7233 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
6858 7234 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
6859 7235 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
6860 7236 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
6861 7237 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
6862 7238 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
6863 7239 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
6864 7240 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
6961 7345 6.620877 TTCTTTCTCAAGCCTATCCTGTTA 57.379 37.500 0.00 0.00 0.00 2.41
7150 7534 7.255590 CCATTAGAACTGAAATGTCCTGTGTTT 60.256 37.037 0.00 0.00 32.34 2.83
7212 7599 4.045022 TCCTAACCCCTATCCTCCAAAAG 58.955 47.826 0.00 0.00 0.00 2.27
7322 7709 7.448469 GGAAGCTATGGTGATGTTAATAATGGT 59.552 37.037 0.00 0.00 0.00 3.55
7437 7824 1.590932 CATTCGATTGAGCCCTGGAG 58.409 55.000 0.95 0.00 0.00 3.86
7509 7896 0.320771 CTACCAGATGCATACCCCGC 60.321 60.000 0.00 0.00 0.00 6.13
7547 7934 0.913451 ATGGCTCTGGTTCTCCTGCT 60.913 55.000 0.00 0.00 33.50 4.24
7590 7977 0.681175 ATTGGGAAAAGCTGCACCAC 59.319 50.000 1.02 0.00 0.00 4.16
7769 8156 2.496070 TGGTCATTCTAGTTGGAGACCG 59.504 50.000 0.00 0.00 46.45 4.79
7900 8287 3.307269 CCGGATACATCAGCTCCATCAAT 60.307 47.826 0.00 0.00 0.00 2.57
8076 8463 2.996631 AGCAGCAACCTTCATCTTAGG 58.003 47.619 0.00 0.00 38.79 2.69
8244 8632 5.901853 TGACAGAATATCTTGAGATGTCCCT 59.098 40.000 3.79 0.00 36.05 4.20
8304 8697 6.313905 AGAATCAAGACATAACAATCCACGTC 59.686 38.462 0.00 0.00 0.00 4.34
8348 8741 9.353999 CCAAGTTATGGCAACTAATTACTTTTC 57.646 33.333 0.00 0.00 43.80 2.29
8365 8758 8.773404 TTACTTTTCTTTCGCTTCTTAGCTAT 57.227 30.769 0.00 0.00 45.51 2.97
8383 8776 1.901591 ATGGAGCAGGTCAACAACTG 58.098 50.000 1.20 0.00 37.76 3.16
8395 8788 0.882042 AACAACTGCACTCAGGCTCG 60.882 55.000 0.00 0.00 44.54 5.03
8500 8893 3.876914 GTCGCCATGGACATCAATTTCTA 59.123 43.478 18.40 0.00 36.91 2.10
8533 8926 2.256117 ACCAGCCAACTAACAGTCAC 57.744 50.000 0.00 0.00 0.00 3.67
8839 9233 2.975799 GGCGAAACCGGAGTTGCA 60.976 61.111 9.46 0.00 35.97 4.08
8918 9312 1.005805 TCCATTGGGTCCCTGATTGTG 59.994 52.381 10.00 0.00 34.93 3.33
9132 9530 2.895372 CATACGCTTGGGGTCCGC 60.895 66.667 0.00 0.00 0.00 5.54
9161 9559 6.457159 TTGGGAGTTTTTCCTTGATACCTA 57.543 37.500 0.00 0.00 45.98 3.08
9175 9573 7.660208 TCCTTGATACCTACAGAAACTGAAAAC 59.340 37.037 5.76 0.00 35.18 2.43
9192 9590 7.610865 ACTGAAAACTTTCCAGTGAAATTCAA 58.389 30.769 0.00 0.00 39.65 2.69
9197 9595 1.533625 TCCAGTGAAATTCAAGGGCG 58.466 50.000 13.52 0.00 0.00 6.13
9203 9601 1.622811 TGAAATTCAAGGGCGCCAAAT 59.377 42.857 30.85 18.17 0.00 2.32
9230 9634 3.873952 CGAAATTCCCCTTCTGAGACATC 59.126 47.826 0.00 0.00 0.00 3.06
9235 9639 3.251484 TCCCCTTCTGAGACATCTTGTT 58.749 45.455 0.00 0.00 0.00 2.83
9245 9649 2.808543 AGACATCTTGTTGAAGTTCCGC 59.191 45.455 0.00 0.00 0.00 5.54
9310 9714 1.661341 GAGCCATTTCTCGTGATGCT 58.339 50.000 0.00 0.00 0.00 3.79
9341 9748 7.464178 CGAACTTAGGTTCTGTATGAAATTCCG 60.464 40.741 14.94 0.00 46.84 4.30
9405 10371 1.524008 CGCGGGGAAAAGGAAAAGCT 61.524 55.000 0.00 0.00 0.00 3.74
9406 10372 0.038251 GCGGGGAAAAGGAAAAGCTG 60.038 55.000 0.00 0.00 0.00 4.24
9407 10373 0.038251 CGGGGAAAAGGAAAAGCTGC 60.038 55.000 0.00 0.00 0.00 5.25
9408 10374 0.038251 GGGGAAAAGGAAAAGCTGCG 60.038 55.000 0.00 0.00 0.00 5.18
9409 10375 0.958822 GGGAAAAGGAAAAGCTGCGA 59.041 50.000 0.00 0.00 0.00 5.10
9410 10376 1.335964 GGGAAAAGGAAAAGCTGCGAC 60.336 52.381 0.00 0.00 0.00 5.19
9411 10377 1.336755 GGAAAAGGAAAAGCTGCGACA 59.663 47.619 0.00 0.00 0.00 4.35
9412 10378 2.385315 GAAAAGGAAAAGCTGCGACAC 58.615 47.619 0.00 0.00 0.00 3.67
9413 10379 0.307760 AAAGGAAAAGCTGCGACACG 59.692 50.000 0.00 0.00 0.00 4.49
9414 10380 0.531974 AAGGAAAAGCTGCGACACGA 60.532 50.000 0.00 0.00 0.00 4.35
9415 10381 0.946221 AGGAAAAGCTGCGACACGAG 60.946 55.000 0.00 0.00 0.00 4.18
9416 10382 1.222115 GGAAAAGCTGCGACACGAGT 61.222 55.000 0.00 0.00 0.00 4.18
9418 10384 0.529773 AAAAGCTGCGACACGAGTCA 60.530 50.000 13.46 0.00 45.23 3.41
9419 10385 1.215655 AAAGCTGCGACACGAGTCAC 61.216 55.000 13.46 3.91 45.23 3.67
9420 10386 3.461982 GCTGCGACACGAGTCACG 61.462 66.667 13.46 1.87 45.23 4.35
9421 10387 2.251371 CTGCGACACGAGTCACGA 59.749 61.111 13.46 0.00 45.23 4.35
9422 10388 2.051614 TGCGACACGAGTCACGAC 60.052 61.111 13.46 0.29 45.23 4.34
9423 10389 2.251667 GCGACACGAGTCACGACT 59.748 61.111 13.46 0.00 45.23 4.18
9424 10390 2.075489 GCGACACGAGTCACGACTG 61.075 63.158 13.46 0.21 45.23 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 108 1.202099 TCATTGGTTAGCACGGGGGA 61.202 55.000 0.00 0.00 0.00 4.81
110 111 0.802494 GTGTCATTGGTTAGCACGGG 59.198 55.000 0.00 0.00 0.00 5.28
111 112 0.442310 CGTGTCATTGGTTAGCACGG 59.558 55.000 7.39 0.00 45.96 4.94
112 113 3.947279 CGTGTCATTGGTTAGCACG 57.053 52.632 0.00 0.00 44.88 5.34
114 115 3.331150 CCTTACGTGTCATTGGTTAGCA 58.669 45.455 0.00 0.00 0.00 3.49
115 116 2.095372 GCCTTACGTGTCATTGGTTAGC 59.905 50.000 0.00 0.00 0.00 3.09
118 119 1.530323 GGCCTTACGTGTCATTGGTT 58.470 50.000 0.00 0.00 0.00 3.67
123 129 1.298667 GGTGGGCCTTACGTGTCAT 59.701 57.895 4.53 0.00 0.00 3.06
168 174 1.000827 CTGGCCGTTGTTTTACATGCA 60.001 47.619 0.00 0.00 0.00 3.96
169 175 1.696988 CTGGCCGTTGTTTTACATGC 58.303 50.000 0.00 0.00 0.00 4.06
202 208 6.054295 ACTCTTGCTTGCTTATTCTATCCTG 58.946 40.000 0.00 0.00 0.00 3.86
203 209 6.245890 ACTCTTGCTTGCTTATTCTATCCT 57.754 37.500 0.00 0.00 0.00 3.24
204 210 7.213678 ACTACTCTTGCTTGCTTATTCTATCC 58.786 38.462 0.00 0.00 0.00 2.59
219 225 4.190772 ACTCTCCTACGTACTACTCTTGC 58.809 47.826 0.00 0.00 0.00 4.01
220 226 6.815641 TGTTACTCTCCTACGTACTACTCTTG 59.184 42.308 0.00 0.00 0.00 3.02
223 229 7.602517 TTTGTTACTCTCCTACGTACTACTC 57.397 40.000 0.00 0.00 0.00 2.59
288 325 6.632035 GGTGTTTGATTATCGACTACTACTCG 59.368 42.308 0.00 0.00 0.00 4.18
296 336 6.761714 GGTGATTAGGTGTTTGATTATCGACT 59.238 38.462 0.00 0.00 0.00 4.18
365 405 3.508012 GCCCCCTGTTTTGTTTTGTTTTT 59.492 39.130 0.00 0.00 0.00 1.94
447 499 4.042934 TCCCTTCCGAAATTTCTTCTTCCT 59.957 41.667 15.92 0.00 0.00 3.36
518 585 3.157949 GCTCGGAGGGAGGAAGGG 61.158 72.222 7.20 0.00 43.36 3.95
576 643 3.083997 GGTGGACTGGCTCCGGAT 61.084 66.667 3.57 0.00 43.03 4.18
676 771 4.120792 GGGTTTTGTCCCGTTTGTTTAA 57.879 40.909 0.00 0.00 37.93 1.52
677 772 3.797451 GGGTTTTGTCCCGTTTGTTTA 57.203 42.857 0.00 0.00 37.93 2.01
703 798 4.467084 GACGGATTGGGCTCGGCA 62.467 66.667 0.00 0.00 31.36 5.69
725 820 2.203494 GATTGGGATTCCGGGGGC 60.203 66.667 0.00 0.00 35.24 5.80
731 826 0.771127 TGGGATCGGATTGGGATTCC 59.229 55.000 0.00 0.00 39.62 3.01
732 827 1.421646 ACTGGGATCGGATTGGGATTC 59.578 52.381 0.00 0.00 0.00 2.52
733 828 1.522900 ACTGGGATCGGATTGGGATT 58.477 50.000 0.00 0.00 0.00 3.01
995 1107 3.536917 CGCTCCCCTCCATACGCA 61.537 66.667 0.00 0.00 0.00 5.24
1164 1276 1.670967 CGTACCGGTTTCCTCTTGACC 60.671 57.143 15.04 0.00 0.00 4.02
1200 1312 2.690497 CGGAAGGAACAGATAGAGCAGA 59.310 50.000 0.00 0.00 0.00 4.26
1201 1313 3.090952 CGGAAGGAACAGATAGAGCAG 57.909 52.381 0.00 0.00 0.00 4.24
1222 1334 0.043822 GCGACAGCAATTCGACGATC 60.044 55.000 0.00 0.00 44.35 3.69
1240 1352 2.623889 TCGAAGAGCTAACTCCTATGGC 59.376 50.000 0.00 0.00 44.65 4.40
1245 1357 3.677424 GCAACATCGAAGAGCTAACTCCT 60.677 47.826 0.00 0.00 44.65 3.69
1248 1360 3.056536 TCAGCAACATCGAAGAGCTAACT 60.057 43.478 10.83 0.00 43.63 2.24
1249 1361 3.254060 TCAGCAACATCGAAGAGCTAAC 58.746 45.455 10.83 0.00 43.63 2.34
1286 1398 6.237942 CGATGACCAGTTAAAAGCTACATCAG 60.238 42.308 0.00 0.00 33.61 2.90
1300 1412 3.090037 ACTAGTGCTACGATGACCAGTT 58.910 45.455 0.00 0.00 0.00 3.16
1305 1417 3.992260 ATGGACTAGTGCTACGATGAC 57.008 47.619 15.92 0.00 0.00 3.06
1367 1487 7.372714 TGCTAGTTCATACAGACGAAACTAAA 58.627 34.615 0.00 0.00 0.00 1.85
1395 1515 6.798427 TCTATGAAACTCCAGCACTCTAAT 57.202 37.500 0.00 0.00 0.00 1.73
1529 1718 1.136141 GCTGAACAGTGAGCACGATTG 60.136 52.381 0.00 0.00 35.15 2.67
1533 1722 1.723542 CTTAGCTGAACAGTGAGCACG 59.276 52.381 0.00 0.00 37.70 5.34
1566 1755 2.046314 GCTTAGCTGAACCCCGCA 60.046 61.111 0.00 0.00 0.00 5.69
1580 1769 6.206829 GGAGAAGTTTACCTACAACATTGCTT 59.793 38.462 0.00 0.00 0.00 3.91
1616 1805 4.100529 GGATGATGTCTTGTTCAAATGCG 58.899 43.478 0.00 0.00 0.00 4.73
1669 1882 7.412563 GCGCATACAAACAAACTAGTGAGAATA 60.413 37.037 0.30 0.00 0.00 1.75
1749 1963 6.711277 AGCATATGGAAGAAGAGTTGTAACA 58.289 36.000 4.56 0.00 0.00 2.41
1762 1976 5.295431 TGAACGACAAAAGCATATGGAAG 57.705 39.130 4.56 0.00 0.00 3.46
1787 2001 2.284190 GATAAGAAGTGTCAGCTGGCC 58.716 52.381 17.28 7.30 0.00 5.36
1822 2036 1.591863 GATGTCCGCCGTTAGCCTC 60.592 63.158 0.00 0.00 38.78 4.70
1948 2162 3.899052 ATGAGGTCCCAATTTGCATTG 57.101 42.857 0.00 0.00 39.79 2.82
1993 2207 5.160607 ACCTCCGATTTGATGTCTTGTTA 57.839 39.130 0.00 0.00 0.00 2.41
2204 2535 6.199908 TCAATTACTTGTCAACAAAAATGCCG 59.800 34.615 0.00 0.00 35.15 5.69
2243 2574 8.773645 CGGTTCATCTAACTTAAATGCATATGA 58.226 33.333 6.97 0.00 38.23 2.15
2293 2624 5.007332 CCGATTTATTAACAGAACTTCCGGG 59.993 44.000 0.00 0.00 0.00 5.73
2386 2717 9.971922 CAAAATGAGAAAGAGGTAAAGTTCAAT 57.028 29.630 0.00 0.00 0.00 2.57
2599 2930 9.265901 GGTGAGCTATCGCATATATTAATGAAT 57.734 33.333 0.00 0.00 37.70 2.57
2747 3080 8.009974 CAGAAGTAAACTTACAGATTTTGACCG 58.990 37.037 2.63 0.00 36.11 4.79
2777 3110 7.962598 AGGAATGAACCTACTACCAAAAAGGTC 60.963 40.741 0.00 0.00 43.93 3.85
2785 3118 7.981142 ACTAAAAAGGAATGAACCTACTACCA 58.019 34.615 0.00 0.00 39.62 3.25
3131 3464 3.519510 ACCTCAAGCAATAGTTAGCCAGA 59.480 43.478 0.00 0.00 0.00 3.86
3758 4093 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
3760 4095 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
3761 4096 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
3778 4113 9.965824 GTCCATTTGAAATCTCTAAAAAGACAA 57.034 29.630 0.00 0.00 0.00 3.18
3779 4114 9.354673 AGTCCATTTGAAATCTCTAAAAAGACA 57.645 29.630 0.00 0.00 0.00 3.41
3783 4118 9.581289 TGGTAGTCCATTTGAAATCTCTAAAAA 57.419 29.630 0.00 0.00 39.03 1.94
3784 4119 9.010029 GTGGTAGTCCATTTGAAATCTCTAAAA 57.990 33.333 0.00 0.00 46.20 1.52
3785 4120 8.160765 TGTGGTAGTCCATTTGAAATCTCTAAA 58.839 33.333 0.00 0.00 46.20 1.85
3786 4121 7.685481 TGTGGTAGTCCATTTGAAATCTCTAA 58.315 34.615 0.00 0.00 46.20 2.10
3787 4122 7.252612 TGTGGTAGTCCATTTGAAATCTCTA 57.747 36.000 0.00 0.00 46.20 2.43
3788 4123 6.126863 TGTGGTAGTCCATTTGAAATCTCT 57.873 37.500 0.00 0.00 46.20 3.10
3789 4124 7.254455 CGTATGTGGTAGTCCATTTGAAATCTC 60.254 40.741 0.00 0.00 46.20 2.75
3790 4125 6.538742 CGTATGTGGTAGTCCATTTGAAATCT 59.461 38.462 0.00 0.00 46.20 2.40
3791 4126 6.238374 CCGTATGTGGTAGTCCATTTGAAATC 60.238 42.308 0.00 0.00 46.20 2.17
3792 4127 5.588648 CCGTATGTGGTAGTCCATTTGAAAT 59.411 40.000 0.00 0.00 46.20 2.17
3793 4128 4.938832 CCGTATGTGGTAGTCCATTTGAAA 59.061 41.667 0.00 0.00 46.20 2.69
3794 4129 4.223255 TCCGTATGTGGTAGTCCATTTGAA 59.777 41.667 0.00 0.00 46.20 2.69
3795 4130 3.770388 TCCGTATGTGGTAGTCCATTTGA 59.230 43.478 0.00 0.00 46.20 2.69
3796 4131 4.131649 TCCGTATGTGGTAGTCCATTTG 57.868 45.455 0.00 0.00 46.20 2.32
3797 4132 4.163458 ACATCCGTATGTGGTAGTCCATTT 59.837 41.667 0.00 0.00 44.79 2.32
3798 4133 3.709653 ACATCCGTATGTGGTAGTCCATT 59.290 43.478 0.00 0.00 44.79 3.16
3799 4134 3.305720 ACATCCGTATGTGGTAGTCCAT 58.694 45.455 0.00 0.00 44.79 3.41
3800 4135 2.742348 ACATCCGTATGTGGTAGTCCA 58.258 47.619 0.00 0.00 44.79 4.02
3801 4136 6.770746 ATATACATCCGTATGTGGTAGTCC 57.229 41.667 3.56 0.00 45.99 3.85
3802 4137 8.610896 GTCTATATACATCCGTATGTGGTAGTC 58.389 40.741 3.56 0.00 45.99 2.59
3803 4138 8.105197 TGTCTATATACATCCGTATGTGGTAGT 58.895 37.037 3.56 0.00 45.99 2.73
3804 4139 8.502105 TGTCTATATACATCCGTATGTGGTAG 57.498 38.462 3.56 3.93 45.99 3.18
3806 4141 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
3839 4174 5.289675 CGGAGACAAATGAGTGAATCTACAC 59.710 44.000 0.00 0.00 40.60 2.90
3840 4175 5.047306 ACGGAGACAAATGAGTGAATCTACA 60.047 40.000 0.00 0.00 0.00 2.74
3841 4176 5.411781 ACGGAGACAAATGAGTGAATCTAC 58.588 41.667 0.00 0.00 0.00 2.59
3842 4177 5.661056 ACGGAGACAAATGAGTGAATCTA 57.339 39.130 0.00 0.00 0.00 1.98
3843 4178 4.543590 ACGGAGACAAATGAGTGAATCT 57.456 40.909 0.00 0.00 0.00 2.40
3844 4179 5.812642 ACATACGGAGACAAATGAGTGAATC 59.187 40.000 0.00 0.00 0.00 2.52
3845 4180 5.734720 ACATACGGAGACAAATGAGTGAAT 58.265 37.500 0.00 0.00 0.00 2.57
3846 4181 5.147330 ACATACGGAGACAAATGAGTGAA 57.853 39.130 0.00 0.00 0.00 3.18
3847 4182 4.801330 ACATACGGAGACAAATGAGTGA 57.199 40.909 0.00 0.00 0.00 3.41
3848 4183 4.504461 GCTACATACGGAGACAAATGAGTG 59.496 45.833 0.00 0.00 0.00 3.51
3849 4184 4.441634 GGCTACATACGGAGACAAATGAGT 60.442 45.833 0.00 0.00 0.00 3.41
3850 4185 4.051922 GGCTACATACGGAGACAAATGAG 58.948 47.826 0.00 0.00 0.00 2.90
3851 4186 3.449377 TGGCTACATACGGAGACAAATGA 59.551 43.478 0.00 0.00 0.00 2.57
3852 4187 3.555956 GTGGCTACATACGGAGACAAATG 59.444 47.826 0.00 0.00 30.76 2.32
3853 4188 3.451178 AGTGGCTACATACGGAGACAAAT 59.549 43.478 2.02 0.00 30.76 2.32
3854 4189 2.829720 AGTGGCTACATACGGAGACAAA 59.170 45.455 2.02 0.00 30.76 2.83
3855 4190 2.453521 AGTGGCTACATACGGAGACAA 58.546 47.619 2.02 0.00 30.76 3.18
3856 4191 2.139323 AGTGGCTACATACGGAGACA 57.861 50.000 2.02 0.00 0.00 3.41
3857 4192 2.165845 ACAAGTGGCTACATACGGAGAC 59.834 50.000 2.02 0.00 0.00 3.36
3858 4193 2.453521 ACAAGTGGCTACATACGGAGA 58.546 47.619 2.02 0.00 0.00 3.71
3859 4194 2.930040 CAACAAGTGGCTACATACGGAG 59.070 50.000 2.02 0.00 0.00 4.63
3860 4195 2.563620 TCAACAAGTGGCTACATACGGA 59.436 45.455 2.02 0.00 0.00 4.69
3861 4196 2.967362 TCAACAAGTGGCTACATACGG 58.033 47.619 2.02 0.00 0.00 4.02
3862 4197 5.351465 AGATTTCAACAAGTGGCTACATACG 59.649 40.000 2.02 0.00 0.00 3.06
3863 4198 6.595716 AGAGATTTCAACAAGTGGCTACATAC 59.404 38.462 2.02 0.00 0.00 2.39
3864 4199 6.711277 AGAGATTTCAACAAGTGGCTACATA 58.289 36.000 2.02 0.00 0.00 2.29
3865 4200 5.564550 AGAGATTTCAACAAGTGGCTACAT 58.435 37.500 2.02 0.00 0.00 2.29
3866 4201 4.973168 AGAGATTTCAACAAGTGGCTACA 58.027 39.130 2.02 0.00 0.00 2.74
3867 4202 6.398918 TCTAGAGATTTCAACAAGTGGCTAC 58.601 40.000 0.00 0.00 0.00 3.58
3868 4203 6.605471 TCTAGAGATTTCAACAAGTGGCTA 57.395 37.500 0.00 0.00 0.00 3.93
3869 4204 5.489792 TCTAGAGATTTCAACAAGTGGCT 57.510 39.130 0.00 0.00 0.00 4.75
3870 4205 6.428159 TCTTTCTAGAGATTTCAACAAGTGGC 59.572 38.462 0.00 0.00 0.00 5.01
3871 4206 7.442364 TGTCTTTCTAGAGATTTCAACAAGTGG 59.558 37.037 0.00 0.00 0.00 4.00
3872 4207 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
3873 4208 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
3886 4221 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
3887 4222 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
3888 4223 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
3889 4224 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
3890 4225 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
3891 4226 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
3892 4227 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
3893 4228 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
3894 4229 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
3895 4230 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
3896 4231 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
3897 4232 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
3898 4233 7.628501 AATACTCCCTCCGTTCCTAAATATT 57.371 36.000 0.00 0.00 0.00 1.28
3899 4234 8.759782 CATAATACTCCCTCCGTTCCTAAATAT 58.240 37.037 0.00 0.00 0.00 1.28
3900 4235 7.731688 ACATAATACTCCCTCCGTTCCTAAATA 59.268 37.037 0.00 0.00 0.00 1.40
3901 4236 6.557633 ACATAATACTCCCTCCGTTCCTAAAT 59.442 38.462 0.00 0.00 0.00 1.40
3902 4237 5.901276 ACATAATACTCCCTCCGTTCCTAAA 59.099 40.000 0.00 0.00 0.00 1.85
3903 4238 5.461327 ACATAATACTCCCTCCGTTCCTAA 58.539 41.667 0.00 0.00 0.00 2.69
3904 4239 5.070823 ACATAATACTCCCTCCGTTCCTA 57.929 43.478 0.00 0.00 0.00 2.94
3905 4240 3.924922 ACATAATACTCCCTCCGTTCCT 58.075 45.455 0.00 0.00 0.00 3.36
3906 4241 5.245526 ACATACATAATACTCCCTCCGTTCC 59.754 44.000 0.00 0.00 0.00 3.62
3907 4242 6.015688 TGACATACATAATACTCCCTCCGTTC 60.016 42.308 0.00 0.00 0.00 3.95
3908 4243 5.836898 TGACATACATAATACTCCCTCCGTT 59.163 40.000 0.00 0.00 0.00 4.44
3909 4244 5.391256 TGACATACATAATACTCCCTCCGT 58.609 41.667 0.00 0.00 0.00 4.69
3910 4245 5.622460 GCTGACATACATAATACTCCCTCCG 60.622 48.000 0.00 0.00 0.00 4.63
3911 4246 5.246203 TGCTGACATACATAATACTCCCTCC 59.754 44.000 0.00 0.00 0.00 4.30
3912 4247 6.346477 TGCTGACATACATAATACTCCCTC 57.654 41.667 0.00 0.00 0.00 4.30
3913 4248 6.705302 CATGCTGACATACATAATACTCCCT 58.295 40.000 0.00 0.00 33.67 4.20
3914 4249 5.352569 GCATGCTGACATACATAATACTCCC 59.647 44.000 11.37 0.00 33.67 4.30
3915 4250 6.169094 AGCATGCTGACATACATAATACTCC 58.831 40.000 21.98 0.00 33.67 3.85
3916 4251 8.763049 TTAGCATGCTGACATACATAATACTC 57.237 34.615 30.42 0.00 33.67 2.59
3917 4252 9.212641 CTTTAGCATGCTGACATACATAATACT 57.787 33.333 30.42 0.00 33.67 2.12
3918 4253 7.959651 GCTTTAGCATGCTGACATACATAATAC 59.040 37.037 30.42 4.56 41.59 1.89
3919 4254 8.032952 GCTTTAGCATGCTGACATACATAATA 57.967 34.615 30.42 1.71 41.59 0.98
3920 4255 6.906659 GCTTTAGCATGCTGACATACATAAT 58.093 36.000 30.42 1.08 41.59 1.28
3921 4256 6.304356 GCTTTAGCATGCTGACATACATAA 57.696 37.500 30.42 10.07 41.59 1.90
3922 4257 5.929697 GCTTTAGCATGCTGACATACATA 57.070 39.130 30.42 3.38 41.59 2.29
3923 4258 4.825546 GCTTTAGCATGCTGACATACAT 57.174 40.909 30.42 2.70 41.59 2.29
3948 4283 2.350522 ACATTAAACTCAGCAGAGGCG 58.649 47.619 11.18 0.00 46.44 5.52
3978 4313 4.142038 GACCAGAAGAACTAAAAAGGGCA 58.858 43.478 0.00 0.00 0.00 5.36
3979 4314 4.142038 TGACCAGAAGAACTAAAAAGGGC 58.858 43.478 0.00 0.00 0.00 5.19
3995 4331 7.584987 CCTGTGTAAATTTCTTAACTGACCAG 58.415 38.462 0.00 0.00 0.00 4.00
4154 4490 1.774254 TGTGCCCCAATACCCAGATAG 59.226 52.381 0.00 0.00 0.00 2.08
4286 4622 6.153510 TGGTATAGATAGTAAGGCAGAGCATG 59.846 42.308 0.00 0.00 0.00 4.06
4405 4741 3.595173 ACAAAAAGACAAACCTGGCAAC 58.405 40.909 0.00 0.00 30.13 4.17
4598 4936 5.102313 GTGATTTCCCAAAATCCGATCAAC 58.898 41.667 8.07 0.00 46.84 3.18
4650 4989 6.970484 AGCCTGACAAAACTACAATTTACTG 58.030 36.000 0.00 0.00 0.00 2.74
4688 5027 8.403236 ACACAACTTTGACTACCAAGTTTTATC 58.597 33.333 0.00 0.00 35.56 1.75
4796 5136 6.036300 CACCAGCATGTATGGCAAATTAAAAG 59.964 38.462 16.37 0.00 41.87 2.27
4823 5163 5.238583 AGACGAAATTACAACTCAAGAGGG 58.761 41.667 1.73 0.00 0.00 4.30
4884 5224 0.593128 AGCACAGCAACGCCTAAAAG 59.407 50.000 0.00 0.00 0.00 2.27
4886 5226 1.948508 CAGCACAGCAACGCCTAAA 59.051 52.632 0.00 0.00 0.00 1.85
4945 5294 1.958288 ATGACCACTAACCCTGAGCT 58.042 50.000 0.00 0.00 0.00 4.09
5135 5484 0.796312 AATCAACTAACAGCACGCGG 59.204 50.000 12.47 0.00 0.00 6.46
5411 5771 4.081531 ACAAATTATGTCCTTGCACATGGG 60.082 41.667 0.00 0.00 37.96 4.00
5428 5788 7.826690 ACGCCTGAAATAAGATTGTACAAATT 58.173 30.769 13.23 12.75 0.00 1.82
5698 6058 7.593825 TCTTTTGCTAGTAAAAATCAAGAGGC 58.406 34.615 17.74 0.00 0.00 4.70
5770 6131 3.136443 TGGTCTTGAGTGATGGTTGTTCT 59.864 43.478 0.00 0.00 0.00 3.01
5960 6324 2.487762 AGTGTGAGAGAAAGCGAGAGAG 59.512 50.000 0.00 0.00 0.00 3.20
5961 6325 2.486203 GAGTGTGAGAGAAAGCGAGAGA 59.514 50.000 0.00 0.00 0.00 3.10
6116 6480 2.677199 ACTATAGCGCACGATCCATTG 58.323 47.619 11.47 0.00 0.00 2.82
6506 6877 6.085328 CCGAACCGTTATTTTACAGTTTTTCG 59.915 38.462 0.00 0.00 0.00 3.46
6750 7126 3.149196 AGTGTACACAGGGAGCATTTTG 58.851 45.455 27.06 0.00 0.00 2.44
6810 7186 6.811634 TTATATTTTGGAACGGAGGGAGTA 57.188 37.500 0.00 0.00 0.00 2.59
6811 7187 5.703730 TTATATTTTGGAACGGAGGGAGT 57.296 39.130 0.00 0.00 0.00 3.85
6812 7188 6.120220 ACTTTATATTTTGGAACGGAGGGAG 58.880 40.000 0.00 0.00 0.00 4.30
6813 7189 6.069705 ACTTTATATTTTGGAACGGAGGGA 57.930 37.500 0.00 0.00 0.00 4.20
6814 7190 6.405397 CCAACTTTATATTTTGGAACGGAGGG 60.405 42.308 0.00 0.00 42.17 4.30
6815 7191 6.405397 CCCAACTTTATATTTTGGAACGGAGG 60.405 42.308 8.44 0.00 42.17 4.30
6816 7192 6.152154 ACCCAACTTTATATTTTGGAACGGAG 59.848 38.462 8.44 0.00 42.17 4.63
6817 7193 6.011481 ACCCAACTTTATATTTTGGAACGGA 58.989 36.000 8.44 0.00 42.17 4.69
6818 7194 6.071840 TGACCCAACTTTATATTTTGGAACGG 60.072 38.462 8.44 0.00 42.17 4.44
6819 7195 6.915349 TGACCCAACTTTATATTTTGGAACG 58.085 36.000 8.44 0.00 42.17 3.95
6820 7196 8.749354 AGATGACCCAACTTTATATTTTGGAAC 58.251 33.333 8.44 4.29 42.17 3.62
6821 7197 8.893563 AGATGACCCAACTTTATATTTTGGAA 57.106 30.769 8.44 0.00 42.17 3.53
6829 7205 9.983024 TTCCAAAATAGATGACCCAACTTTATA 57.017 29.630 0.00 0.00 0.00 0.98
6830 7206 8.749354 GTTCCAAAATAGATGACCCAACTTTAT 58.251 33.333 0.00 0.00 0.00 1.40
6831 7207 7.094549 CGTTCCAAAATAGATGACCCAACTTTA 60.095 37.037 0.00 0.00 0.00 1.85
6832 7208 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
6833 7209 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
6834 7210 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
6835 7211 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
6836 7212 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
6837 7213 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
6838 7214 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
6839 7215 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
6840 7216 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
6841 7217 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
6842 7218 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
6843 7219 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
6844 7220 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
6845 7221 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
6846 7222 6.612456 TCTTATACTCCCTCCGTTCCAAAATA 59.388 38.462 0.00 0.00 0.00 1.40
6847 7223 5.427481 TCTTATACTCCCTCCGTTCCAAAAT 59.573 40.000 0.00 0.00 0.00 1.82
6848 7224 4.778958 TCTTATACTCCCTCCGTTCCAAAA 59.221 41.667 0.00 0.00 0.00 2.44
6849 7225 4.355549 TCTTATACTCCCTCCGTTCCAAA 58.644 43.478 0.00 0.00 0.00 3.28
6850 7226 3.985127 TCTTATACTCCCTCCGTTCCAA 58.015 45.455 0.00 0.00 0.00 3.53
6851 7227 3.675348 TCTTATACTCCCTCCGTTCCA 57.325 47.619 0.00 0.00 0.00 3.53
6852 7228 4.158209 GCTATCTTATACTCCCTCCGTTCC 59.842 50.000 0.00 0.00 0.00 3.62
6853 7229 5.011586 AGCTATCTTATACTCCCTCCGTTC 58.988 45.833 0.00 0.00 0.00 3.95
6854 7230 5.000570 AGCTATCTTATACTCCCTCCGTT 57.999 43.478 0.00 0.00 0.00 4.44
6855 7231 4.661247 AGCTATCTTATACTCCCTCCGT 57.339 45.455 0.00 0.00 0.00 4.69
6856 7232 5.712917 AGAAAGCTATCTTATACTCCCTCCG 59.287 44.000 0.00 0.00 31.02 4.63
6857 7233 7.123098 GGTAGAAAGCTATCTTATACTCCCTCC 59.877 44.444 0.00 0.00 30.95 4.30
6858 7234 7.891712 AGGTAGAAAGCTATCTTATACTCCCTC 59.108 40.741 0.00 0.00 34.35 4.30
6859 7235 7.771673 AGGTAGAAAGCTATCTTATACTCCCT 58.228 38.462 0.00 0.00 34.35 4.20
6860 7236 8.425237 AAGGTAGAAAGCTATCTTATACTCCC 57.575 38.462 0.00 0.00 44.30 4.30
6949 7333 6.699575 ACACAAATCAATAACAGGATAGGC 57.300 37.500 0.00 0.00 0.00 3.93
6961 7345 5.531634 CAACAGGCTACAACACAAATCAAT 58.468 37.500 0.00 0.00 0.00 2.57
7130 7514 8.871686 AATTAAAACACAGGACATTTCAGTTC 57.128 30.769 0.00 0.00 0.00 3.01
7212 7599 5.254115 ACTACTCCCATAAGAAAAAGGCAC 58.746 41.667 0.00 0.00 0.00 5.01
7322 7709 7.016858 GGACCTAATGGGGAGTAATACATGTTA 59.983 40.741 2.30 0.00 40.03 2.41
7437 7824 2.031495 AGAGACATAGGCCCCATACC 57.969 55.000 0.00 0.00 0.00 2.73
7509 7896 4.392940 CCATGCTTCCCAGTAGAATTAGG 58.607 47.826 0.00 0.00 0.00 2.69
7547 7934 1.141657 GAGCCATGAATGCCTCCACTA 59.858 52.381 0.00 0.00 0.00 2.74
7590 7977 2.435805 TCCTCTTGCTGTATTGGCCTAG 59.564 50.000 3.32 0.00 0.00 3.02
7769 8156 2.019984 CCACTCCTGGAAGCTATTTGC 58.980 52.381 0.00 0.00 40.55 3.68
8076 8463 0.524862 CTGGCTGACAAGTTGCATCC 59.475 55.000 1.81 7.83 0.00 3.51
8086 8473 2.685017 AGATCCGCCTGGCTGACA 60.685 61.111 15.26 0.00 34.14 3.58
8106 8493 0.608035 TTTGGGCACGGGTTGATCTC 60.608 55.000 0.00 0.00 0.00 2.75
8304 8697 5.943706 CTTGGAAAGGAGCAGATCATATG 57.056 43.478 0.00 0.00 41.27 1.78
8332 8725 7.803659 AGAAGCGAAAGAAAAGTAATTAGTTGC 59.196 33.333 6.31 4.16 0.00 4.17
8365 8758 0.819259 GCAGTTGTTGACCTGCTCCA 60.819 55.000 4.48 0.00 39.48 3.86
8371 8764 1.475751 CCTGAGTGCAGTTGTTGACCT 60.476 52.381 0.00 0.00 40.63 3.85
8383 8776 3.200593 CCATGCGAGCCTGAGTGC 61.201 66.667 1.96 0.00 0.00 4.40
8500 8893 1.338769 GGCTGGTTGTATCTCGGTTGT 60.339 52.381 0.00 0.00 0.00 3.32
8839 9233 5.086621 AGAAAACCAATAGCCAGAACCATT 58.913 37.500 0.00 0.00 0.00 3.16
8996 9390 3.133003 TCTGGATTCCTAAGGCTCGAAAG 59.867 47.826 3.95 0.00 0.00 2.62
9132 9530 4.161377 TCAAGGAAAAACTCCCAAGGTTTG 59.839 41.667 0.00 0.00 46.81 2.93
9161 9559 5.710099 TCACTGGAAAGTTTTCAGTTTCTGT 59.290 36.000 24.34 2.84 40.81 3.41
9175 9573 3.612479 CGCCCTTGAATTTCACTGGAAAG 60.612 47.826 14.61 2.97 45.58 2.62
9192 9590 1.906105 TTCGGTCTATTTGGCGCCCT 61.906 55.000 26.77 11.49 0.00 5.19
9197 9595 2.361119 GGGGAATTTCGGTCTATTTGGC 59.639 50.000 0.00 0.00 0.00 4.52
9203 9601 3.446968 TCAGAAGGGGAATTTCGGTCTA 58.553 45.455 0.00 0.00 0.00 2.59
9230 9634 0.661020 AACCGCGGAACTTCAACAAG 59.339 50.000 35.90 0.00 35.50 3.16
9235 9639 0.745128 AACACAACCGCGGAACTTCA 60.745 50.000 35.90 0.00 0.00 3.02
9245 9649 1.269517 CCCACATTCCAAACACAACCG 60.270 52.381 0.00 0.00 0.00 4.44
9321 9728 5.687166 ACCGGAATTTCATACAGAACCTA 57.313 39.130 9.46 0.00 35.56 3.08
9341 9748 3.681593 TGCTCAGGGTGTTACATAAACC 58.318 45.455 0.00 0.00 37.27 3.27
9406 10372 2.075489 CAGTCGTGACTCGTGTCGC 61.075 63.158 18.64 18.64 45.70 5.19
9407 10373 2.075489 GCAGTCGTGACTCGTGTCG 61.075 63.158 12.54 3.04 45.70 4.35
9408 10374 1.729838 GGCAGTCGTGACTCGTGTC 60.730 63.158 10.62 10.62 40.20 3.67
9409 10375 2.335369 GGCAGTCGTGACTCGTGT 59.665 61.111 0.00 0.00 40.20 4.49
9410 10376 2.801162 CGGCAGTCGTGACTCGTG 60.801 66.667 0.00 0.00 40.20 4.35
9411 10377 4.702081 GCGGCAGTCGTGACTCGT 62.702 66.667 11.25 0.00 40.20 4.18
9519 10485 2.092882 GCGCGTGTACCCAGACTTC 61.093 63.158 8.43 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.