Multiple sequence alignment - TraesCS2B01G456300
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS2B01G456300
chr2B
100.000
4336
0
0
1
4336
651072547
651068212
0.000000e+00
8008.0
1
TraesCS2B01G456300
chr2B
91.289
287
23
2
41
325
373728410
373728124
1.460000e-104
390.0
2
TraesCS2B01G456300
chr2B
85.644
202
19
8
305
499
373728098
373727900
2.040000e-48
204.0
3
TraesCS2B01G456300
chr2B
100.000
39
0
0
1
39
373741442
373741404
6.010000e-09
73.1
4
TraesCS2B01G456300
chr2D
96.641
2233
57
7
2106
4336
544849710
544847494
0.000000e+00
3692.0
5
TraesCS2B01G456300
chr2D
93.103
1450
54
14
496
1926
544851470
544850048
0.000000e+00
2082.0
6
TraesCS2B01G456300
chr2D
93.989
183
10
1
1922
2103
544849969
544849787
4.270000e-70
276.0
7
TraesCS2B01G456300
chr2A
91.524
1640
80
14
496
2103
688635211
688636823
0.000000e+00
2204.0
8
TraesCS2B01G456300
chr2A
97.306
891
24
0
2919
3809
688637759
688638649
0.000000e+00
1513.0
9
TraesCS2B01G456300
chr2A
96.206
817
29
2
2106
2921
688636900
688637715
0.000000e+00
1336.0
10
TraesCS2B01G456300
chr2A
92.929
297
14
2
4041
4336
688641135
688641425
4.010000e-115
425.0
11
TraesCS2B01G456300
chr2A
92.032
251
13
2
3802
4045
688640584
688640834
3.210000e-91
346.0
12
TraesCS2B01G456300
chr6B
92.857
392
25
3
1
391
562464489
562464100
2.260000e-157
566.0
13
TraesCS2B01G456300
chr6A
91.930
285
23
0
41
325
142946725
142947009
2.430000e-107
399.0
14
TraesCS2B01G456300
chr6A
87.778
180
15
5
325
497
41928889
41928710
2.040000e-48
204.0
15
TraesCS2B01G456300
chr6A
100.000
29
0
0
511
539
607677226
607677254
2.000000e-03
54.7
16
TraesCS2B01G456300
chr1B
87.719
285
26
5
41
325
124699434
124699709
1.500000e-84
324.0
17
TraesCS2B01G456300
chr1B
81.614
223
35
5
89
306
664344909
664345130
3.450000e-41
180.0
18
TraesCS2B01G456300
chr3A
86.010
193
20
3
323
508
265181640
265181448
2.640000e-47
200.0
19
TraesCS2B01G456300
chrUn
78.646
192
32
6
311
494
445254118
445253928
7.620000e-23
119.0
20
TraesCS2B01G456300
chr6D
100.000
39
0
0
1
39
366687540
366687502
6.010000e-09
73.1
21
TraesCS2B01G456300
chr5D
85.484
62
9
0
436
497
442661230
442661291
1.010000e-06
65.8
22
TraesCS2B01G456300
chr1D
100.000
31
0
0
747
777
471859995
471860025
1.680000e-04
58.4
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS2B01G456300
chr2B
651068212
651072547
4335
True
8008.000000
8008
100.000000
1
4336
1
chr2B.!!$R2
4335
1
TraesCS2B01G456300
chr2B
373727900
373728410
510
True
297.000000
390
88.466500
41
499
2
chr2B.!!$R3
458
2
TraesCS2B01G456300
chr2D
544847494
544851470
3976
True
2016.666667
3692
94.577667
496
4336
3
chr2D.!!$R1
3840
3
TraesCS2B01G456300
chr2A
688635211
688641425
6214
False
1164.800000
2204
93.999400
496
4336
5
chr2A.!!$F1
3840
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
71
72
0.588252
GAGACAATGCGTGCAGTTGT
59.412
50.0
16.80
16.80
38.66
3.32
F
1304
1379
0.333993
ATATGGGGCCATGAGGATGC
59.666
55.0
4.39
0.00
37.82
3.91
F
2318
2569
0.106868
CTGAGGAAGGCCATGCATCA
60.107
55.0
5.01
6.09
36.29
3.07
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1717
1800
1.005037
CGGTTGGCTAGAGCACACA
60.005
57.895
3.54
0.0
44.36
3.72
R
3050
3349
0.820871
AAACGCCACAACACCAATGT
59.179
45.000
0.00
0.0
42.46
2.71
R
4238
6799
0.108585
GTCAGCACCCAGTTTCCAGA
59.891
55.000
0.00
0.0
0.00
3.86
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
21
22
2.568623
ACCATGAAAAAGACGCTCCT
57.431
45.000
0.00
0.00
0.00
3.69
22
23
2.154462
ACCATGAAAAAGACGCTCCTG
58.846
47.619
0.00
0.00
0.00
3.86
23
24
2.224523
ACCATGAAAAAGACGCTCCTGA
60.225
45.455
0.00
0.00
0.00
3.86
24
25
3.012518
CCATGAAAAAGACGCTCCTGAT
58.987
45.455
0.00
0.00
0.00
2.90
25
26
3.441572
CCATGAAAAAGACGCTCCTGATT
59.558
43.478
0.00
0.00
0.00
2.57
26
27
4.437930
CCATGAAAAAGACGCTCCTGATTC
60.438
45.833
0.00
0.00
0.00
2.52
27
28
4.008074
TGAAAAAGACGCTCCTGATTCT
57.992
40.909
0.00
0.00
0.00
2.40
28
29
3.748048
TGAAAAAGACGCTCCTGATTCTG
59.252
43.478
0.00
0.00
0.00
3.02
29
30
3.409026
AAAAGACGCTCCTGATTCTGT
57.591
42.857
0.00
0.00
0.00
3.41
30
31
4.537135
AAAAGACGCTCCTGATTCTGTA
57.463
40.909
0.00
0.00
0.00
2.74
31
32
3.791973
AAGACGCTCCTGATTCTGTAG
57.208
47.619
0.00
0.00
0.00
2.74
32
33
2.729194
AGACGCTCCTGATTCTGTAGT
58.271
47.619
0.00
0.00
0.00
2.73
33
34
3.887352
AGACGCTCCTGATTCTGTAGTA
58.113
45.455
0.00
0.00
0.00
1.82
34
35
4.465886
AGACGCTCCTGATTCTGTAGTAT
58.534
43.478
0.00
0.00
0.00
2.12
35
36
4.277174
AGACGCTCCTGATTCTGTAGTATG
59.723
45.833
0.00
0.00
0.00
2.39
36
37
3.954904
ACGCTCCTGATTCTGTAGTATGT
59.045
43.478
0.00
0.00
0.00
2.29
37
38
4.202060
ACGCTCCTGATTCTGTAGTATGTG
60.202
45.833
0.00
0.00
0.00
3.21
38
39
4.202060
CGCTCCTGATTCTGTAGTATGTGT
60.202
45.833
0.00
0.00
0.00
3.72
39
40
5.285651
GCTCCTGATTCTGTAGTATGTGTC
58.714
45.833
0.00
0.00
0.00
3.67
44
45
6.461648
CCTGATTCTGTAGTATGTGTCGGAAT
60.462
42.308
0.00
0.00
38.21
3.01
62
63
3.721625
TCGGAAGAGAGACAATGCG
57.278
52.632
0.00
0.00
34.84
4.73
70
71
0.870393
AGAGACAATGCGTGCAGTTG
59.130
50.000
0.00
7.84
0.00
3.16
71
72
0.588252
GAGACAATGCGTGCAGTTGT
59.412
50.000
16.80
16.80
38.66
3.32
114
115
6.369065
GGTGTATTCTTTTTCTGAGATCGTGT
59.631
38.462
0.00
0.00
0.00
4.49
120
121
6.277605
TCTTTTTCTGAGATCGTGTGTGTTA
58.722
36.000
0.00
0.00
0.00
2.41
143
144
4.585879
TGTAGGCCAAGTCCTTATGTTTC
58.414
43.478
5.01
0.00
37.66
2.78
215
216
8.746922
TTTCAAAATCAAACATGCTAGTCATC
57.253
30.769
0.00
0.00
31.79
2.92
264
265
9.862585
AATAATGTTCTCGAAAATTGCAAAAAC
57.137
25.926
1.71
0.00
31.20
2.43
265
266
5.710613
TGTTCTCGAAAATTGCAAAAACC
57.289
34.783
1.71
0.00
0.00
3.27
272
273
6.846350
TCGAAAATTGCAAAAACCACATTTT
58.154
28.000
1.71
2.84
42.55
1.82
336
384
7.489435
TGAAAGACTATTCTGATGAACGATGTC
59.511
37.037
0.00
0.00
34.71
3.06
366
414
6.016777
AGGTTTCTTCACATTCACACTTCATC
60.017
38.462
0.00
0.00
0.00
2.92
376
424
4.286297
TCACACTTCATCGAGGGAAAAT
57.714
40.909
0.00
0.00
0.00
1.82
400
455
9.614792
AATGATACTCAGGTTACCTTATTGTTC
57.385
33.333
0.00
0.00
0.00
3.18
403
458
5.861727
ACTCAGGTTACCTTATTGTTCGTT
58.138
37.500
0.00
0.00
0.00
3.85
427
482
8.647226
GTTAAAATTGGATATGTGAAGTGTTGC
58.353
33.333
0.00
0.00
0.00
4.17
433
488
4.814234
GGATATGTGAAGTGTTGCGGAATA
59.186
41.667
0.00
0.00
0.00
1.75
444
499
2.689553
TGCGGAATAGCACATTGAGA
57.310
45.000
0.00
0.00
42.92
3.27
460
515
9.860898
GCACATTGAGAAGGTTCTATTAATTTT
57.139
29.630
0.00
0.00
37.73
1.82
466
521
9.052759
TGAGAAGGTTCTATTAATTTTATCGCC
57.947
33.333
0.00
0.00
37.73
5.54
468
523
7.996644
AGAAGGTTCTATTAATTTTATCGCCCA
59.003
33.333
0.00
0.00
35.34
5.36
469
524
7.745620
AGGTTCTATTAATTTTATCGCCCAG
57.254
36.000
0.00
0.00
0.00
4.45
572
627
6.539826
TGAGCATATTCATCAAACTCACGAAT
59.460
34.615
0.00
0.00
0.00
3.34
703
758
4.262249
CGAAAGGAAATAAAAACAGGGGCA
60.262
41.667
0.00
0.00
0.00
5.36
933
993
1.377725
CCAACGCCAGGCATCTCTT
60.378
57.895
13.30
0.00
0.00
2.85
934
994
1.372087
CCAACGCCAGGCATCTCTTC
61.372
60.000
13.30
0.00
0.00
2.87
935
995
1.078143
AACGCCAGGCATCTCTTCC
60.078
57.895
13.30
0.00
0.00
3.46
936
996
2.203126
CGCCAGGCATCTCTTCCC
60.203
66.667
13.30
0.00
0.00
3.97
937
997
2.203126
GCCAGGCATCTCTTCCCG
60.203
66.667
6.55
0.00
0.00
5.14
938
998
2.203126
CCAGGCATCTCTTCCCGC
60.203
66.667
0.00
0.00
0.00
6.13
1158
1218
0.976641
TCTTTGCCATCCAGAGACGT
59.023
50.000
0.00
0.00
30.39
4.34
1165
1225
0.803768
CATCCAGAGACGTTGCTCGG
60.804
60.000
0.00
0.00
44.69
4.63
1304
1379
0.333993
ATATGGGGCCATGAGGATGC
59.666
55.000
4.39
0.00
37.82
3.91
1348
1423
4.046286
TCCAACTGGATTGCTATTGGTT
57.954
40.909
9.61
0.00
40.61
3.67
1493
1571
7.063308
GCATTTAACTGACAAATAACCATGGTG
59.937
37.037
20.60
8.06
0.00
4.17
1496
1574
8.693120
TTAACTGACAAATAACCATGGTGTAA
57.307
30.769
20.60
7.79
0.00
2.41
1586
1664
5.033589
AGCTACCGAGTACTATACTGTGT
57.966
43.478
0.00
0.00
39.59
3.72
1610
1691
8.065007
TGTTAAATTTAGGGGATAAGGAGCAAT
58.935
33.333
0.00
0.00
0.00
3.56
1674
1757
4.515567
CCTTTTAGAAGAAACAAGGCGTCT
59.484
41.667
0.00
0.00
34.71
4.18
1717
1800
1.485066
CGGGTGGGTAAGCTTACAGAT
59.515
52.381
31.98
0.00
35.37
2.90
1806
1899
4.889409
TCAAGCTCCAAAATCAGAAAGTGT
59.111
37.500
0.00
0.00
0.00
3.55
2007
2184
0.975887
ACGTAACCCCGGCTCTAAAA
59.024
50.000
0.00
0.00
0.00
1.52
2035
2212
6.827586
TTAGTTCAACAACACCAAGAAAGT
57.172
33.333
0.00
0.00
34.60
2.66
2054
2231
6.318900
AGAAAGTCTTTAGTCCCAAACAAGTG
59.681
38.462
0.00
0.00
0.00
3.16
2086
2263
5.337975
GCTAGATCTGAAACCCATAGGATCC
60.338
48.000
2.48
2.48
36.73
3.36
2123
2374
5.448654
TGGCAATTTGACTGGATAATAGCT
58.551
37.500
3.47
0.00
0.00
3.32
2189
2440
9.674824
CATAAGATGGTCAAAAAGAATATGAGC
57.325
33.333
0.00
0.00
40.88
4.26
2229
2480
3.499202
CCATACTAGCCCAGCCAAATCAT
60.499
47.826
0.00
0.00
0.00
2.45
2270
2521
2.709475
CTATTTGCTCACCGGCGC
59.291
61.111
0.00
0.00
34.52
6.53
2316
2567
1.455217
GCTGAGGAAGGCCATGCAT
60.455
57.895
5.01
0.00
36.29
3.96
2318
2569
0.106868
CTGAGGAAGGCCATGCATCA
60.107
55.000
5.01
6.09
36.29
3.07
2447
2700
6.367983
AGAACATTACCATGCATAGATTGGT
58.632
36.000
13.24
13.24
45.48
3.67
2449
2702
4.279169
ACATTACCATGCATAGATTGGTGC
59.721
41.667
17.36
0.00
43.45
5.01
2474
2727
8.349983
GCCCGCTTCTTTATTTCATTTATCTTA
58.650
33.333
0.00
0.00
0.00
2.10
2871
3124
1.199327
CTCTGCATGTGCTCCAACTTG
59.801
52.381
6.55
0.00
42.66
3.16
2921
3220
7.886629
AAACATGGTGATAGTTCTGCATAAT
57.113
32.000
0.00
0.00
0.00
1.28
3050
3349
9.542462
GCAATCCAGTATCTACAGTTGTATTTA
57.458
33.333
0.00
0.00
0.00
1.40
3378
3677
4.537135
AGTTATTGAGTCCTCGCTTTCA
57.463
40.909
0.00
0.00
0.00
2.69
3723
4022
7.775120
AGTTTTGAGAATTGTGTTTGAGTCAT
58.225
30.769
0.00
0.00
0.00
3.06
3762
4061
2.418746
GGGCATCTCACGTCTTACACAT
60.419
50.000
0.00
0.00
0.00
3.21
3874
6123
5.820947
TGTTCAGGAGGTACAGTTTCTTTTC
59.179
40.000
0.00
0.00
0.00
2.29
3878
6127
6.542370
TCAGGAGGTACAGTTTCTTTTCTTTG
59.458
38.462
0.00
0.00
0.00
2.77
3972
6228
6.753279
AGATACATTGGAATCGCAAATTTGTG
59.247
34.615
22.90
22.90
39.93
3.33
4022
6278
9.724839
TTACAAACTGCACAAAGTAAGAAATAC
57.275
29.630
0.00
0.00
34.52
1.89
4093
6654
2.662866
CCAATCCATGAGCTCATTGGT
58.337
47.619
27.80
19.79
33.61
3.67
4202
6763
0.179108
GGTCACCAGCGATACAGACC
60.179
60.000
0.00
2.49
38.77
3.85
4222
6783
6.150474
CAGACCGTTTTTGTCCCTTATAATGT
59.850
38.462
0.00
0.00
33.09
2.71
4223
6784
7.334921
CAGACCGTTTTTGTCCCTTATAATGTA
59.665
37.037
0.00
0.00
33.09
2.29
4224
6785
7.884354
AGACCGTTTTTGTCCCTTATAATGTAA
59.116
33.333
0.00
0.00
33.09
2.41
4225
6786
8.406730
ACCGTTTTTGTCCCTTATAATGTAAA
57.593
30.769
0.00
0.00
0.00
2.01
4226
6787
9.027202
ACCGTTTTTGTCCCTTATAATGTAAAT
57.973
29.630
0.00
0.00
0.00
1.40
4252
6813
6.780457
AAATATGAATCTGGAAACTGGGTG
57.220
37.500
0.00
0.00
0.00
4.61
4257
6818
0.108585
TCTGGAAACTGGGTGCTGAC
59.891
55.000
0.00
0.00
0.00
3.51
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
0
1
3.751175
CAGGAGCGTCTTTTTCATGGTTA
59.249
43.478
0.00
0.00
0.00
2.85
1
2
2.554032
CAGGAGCGTCTTTTTCATGGTT
59.446
45.455
0.00
0.00
0.00
3.67
2
3
2.154462
CAGGAGCGTCTTTTTCATGGT
58.846
47.619
0.00
0.00
0.00
3.55
3
4
2.426522
TCAGGAGCGTCTTTTTCATGG
58.573
47.619
0.00
0.00
0.00
3.66
4
5
4.394300
AGAATCAGGAGCGTCTTTTTCATG
59.606
41.667
0.00
0.00
0.00
3.07
5
6
4.394300
CAGAATCAGGAGCGTCTTTTTCAT
59.606
41.667
0.00
0.00
0.00
2.57
6
7
3.748048
CAGAATCAGGAGCGTCTTTTTCA
59.252
43.478
0.00
0.00
0.00
2.69
7
8
3.748568
ACAGAATCAGGAGCGTCTTTTTC
59.251
43.478
0.00
0.00
0.00
2.29
8
9
3.744660
ACAGAATCAGGAGCGTCTTTTT
58.255
40.909
0.00
0.00
0.00
1.94
9
10
3.409026
ACAGAATCAGGAGCGTCTTTT
57.591
42.857
0.00
0.00
0.00
2.27
10
11
3.511934
ACTACAGAATCAGGAGCGTCTTT
59.488
43.478
0.00
0.00
0.00
2.52
11
12
3.093057
ACTACAGAATCAGGAGCGTCTT
58.907
45.455
0.00
0.00
0.00
3.01
12
13
2.729194
ACTACAGAATCAGGAGCGTCT
58.271
47.619
0.00
0.00
0.00
4.18
13
14
4.036971
ACATACTACAGAATCAGGAGCGTC
59.963
45.833
0.00
0.00
0.00
5.19
14
15
3.954904
ACATACTACAGAATCAGGAGCGT
59.045
43.478
0.00
0.00
0.00
5.07
15
16
4.202060
ACACATACTACAGAATCAGGAGCG
60.202
45.833
0.00
0.00
0.00
5.03
16
17
5.269505
ACACATACTACAGAATCAGGAGC
57.730
43.478
0.00
0.00
0.00
4.70
17
18
5.506483
CCGACACATACTACAGAATCAGGAG
60.506
48.000
0.00
0.00
0.00
3.69
18
19
4.338400
CCGACACATACTACAGAATCAGGA
59.662
45.833
0.00
0.00
0.00
3.86
19
20
4.338400
TCCGACACATACTACAGAATCAGG
59.662
45.833
0.00
0.00
0.00
3.86
20
21
5.500645
TCCGACACATACTACAGAATCAG
57.499
43.478
0.00
0.00
0.00
2.90
21
22
5.907866
TTCCGACACATACTACAGAATCA
57.092
39.130
0.00
0.00
0.00
2.57
22
23
5.625721
CGATTCCGACACATACTACAGAATC
59.374
44.000
0.00
0.00
38.22
2.52
23
24
5.507482
CCGATTCCGACACATACTACAGAAT
60.507
44.000
0.00
0.00
38.22
2.40
24
25
4.201980
CCGATTCCGACACATACTACAGAA
60.202
45.833
0.00
0.00
38.22
3.02
25
26
3.314357
CCGATTCCGACACATACTACAGA
59.686
47.826
0.00
0.00
38.22
3.41
26
27
3.314357
TCCGATTCCGACACATACTACAG
59.686
47.826
0.00
0.00
38.22
2.74
27
28
3.281158
TCCGATTCCGACACATACTACA
58.719
45.455
0.00
0.00
38.22
2.74
28
29
3.976793
TCCGATTCCGACACATACTAC
57.023
47.619
0.00
0.00
38.22
2.73
29
30
4.201657
TCTTCCGATTCCGACACATACTA
58.798
43.478
0.00
0.00
38.22
1.82
30
31
3.021695
TCTTCCGATTCCGACACATACT
58.978
45.455
0.00
0.00
38.22
2.12
31
32
3.066342
TCTCTTCCGATTCCGACACATAC
59.934
47.826
0.00
0.00
38.22
2.39
32
33
3.284617
TCTCTTCCGATTCCGACACATA
58.715
45.455
0.00
0.00
38.22
2.29
33
34
2.099921
CTCTCTTCCGATTCCGACACAT
59.900
50.000
0.00
0.00
38.22
3.21
34
35
1.472878
CTCTCTTCCGATTCCGACACA
59.527
52.381
0.00
0.00
38.22
3.72
35
36
1.743958
TCTCTCTTCCGATTCCGACAC
59.256
52.381
0.00
0.00
38.22
3.67
36
37
1.743958
GTCTCTCTTCCGATTCCGACA
59.256
52.381
0.00
0.00
38.22
4.35
37
38
1.743958
TGTCTCTCTTCCGATTCCGAC
59.256
52.381
0.00
0.00
38.22
4.79
38
39
2.124277
TGTCTCTCTTCCGATTCCGA
57.876
50.000
0.00
0.00
38.22
4.55
39
40
2.941453
TTGTCTCTCTTCCGATTCCG
57.059
50.000
0.00
0.00
0.00
4.30
44
45
0.888619
ACGCATTGTCTCTCTTCCGA
59.111
50.000
0.00
0.00
0.00
4.55
56
57
0.661187
GACCACAACTGCACGCATTG
60.661
55.000
10.59
10.59
0.00
2.82
58
59
1.227943
AGACCACAACTGCACGCAT
60.228
52.632
0.00
0.00
0.00
4.73
62
63
0.463654
TGGTGAGACCACAACTGCAC
60.464
55.000
0.00
0.00
44.79
4.57
70
71
2.104963
ACCTTCTTTCTGGTGAGACCAC
59.895
50.000
0.00
0.00
44.79
4.16
105
106
3.797256
GCCTACATAACACACACGATCTC
59.203
47.826
0.00
0.00
0.00
2.75
109
110
1.619332
TGGCCTACATAACACACACGA
59.381
47.619
3.32
0.00
0.00
4.35
114
115
2.910319
AGGACTTGGCCTACATAACACA
59.090
45.455
3.32
0.00
36.22
3.72
120
121
4.862641
AACATAAGGACTTGGCCTACAT
57.137
40.909
3.32
0.00
37.26
2.29
143
144
0.394352
ACTCTATTTGGGCTTGCCCG
60.394
55.000
23.81
10.66
0.00
6.13
247
248
5.655893
ATGTGGTTTTTGCAATTTTCGAG
57.344
34.783
0.00
0.00
0.00
4.04
276
277
8.918961
TTGTTGTTCAGAATAACACGAATTTT
57.081
26.923
21.46
0.00
41.30
1.82
279
280
8.918961
TTTTTGTTGTTCAGAATAACACGAAT
57.081
26.923
21.46
0.00
41.30
3.34
314
317
6.456795
TGACATCGTTCATCAGAATAGTCT
57.543
37.500
0.00
0.00
35.92
3.24
336
384
3.503748
GTGAATGTGAAGAAACCTCCCTG
59.496
47.826
0.00
0.00
0.00
4.45
376
424
7.093640
ACGAACAATAAGGTAACCTGAGTATCA
60.094
37.037
0.00
0.00
46.23
2.15
400
455
8.849490
CAACACTTCACATATCCAATTTTAACG
58.151
33.333
0.00
0.00
0.00
3.18
403
458
7.026562
CGCAACACTTCACATATCCAATTTTA
58.973
34.615
0.00
0.00
0.00
1.52
427
482
3.535561
ACCTTCTCAATGTGCTATTCCG
58.464
45.455
0.00
0.00
0.00
4.30
433
488
8.814038
AATTAATAGAACCTTCTCAATGTGCT
57.186
30.769
0.00
0.00
38.70
4.40
444
499
7.778382
ACTGGGCGATAAAATTAATAGAACCTT
59.222
33.333
0.00
0.00
0.00
3.50
485
540
9.132521
CATGCTTTTGAAAATAACTAGGACAAG
57.867
33.333
0.00
0.00
0.00
3.16
621
676
6.578023
TGTTCGGGATTTCAAACAAAAATCT
58.422
32.000
8.10
0.00
41.04
2.40
727
782
0.107268
AAGGTACGCACGGGACTTTT
59.893
50.000
0.00
0.00
0.00
2.27
924
984
2.110006
GGAGCGGGAAGAGATGCC
59.890
66.667
0.00
0.00
35.86
4.40
1158
1218
2.735151
TCTAGACAATCTCCCGAGCAA
58.265
47.619
0.00
0.00
0.00
3.91
1165
1225
8.158789
ACCAGTAGTAGTATCTAGACAATCTCC
58.841
40.741
0.00
0.00
0.00
3.71
1304
1379
3.924073
TCAGACGAAACGACACATATTGG
59.076
43.478
0.00
0.00
0.00
3.16
1417
1492
6.539173
ACACCGATTATTATGCAAATAGGGA
58.461
36.000
11.28
0.00
33.56
4.20
1493
1571
4.839668
ATAGATCGGACAGCAGAGTTAC
57.160
45.455
0.00
0.00
0.00
2.50
1496
1574
3.192422
GCATATAGATCGGACAGCAGAGT
59.808
47.826
0.00
0.00
0.00
3.24
1717
1800
1.005037
CGGTTGGCTAGAGCACACA
60.005
57.895
3.54
0.00
44.36
3.72
1849
1942
8.591072
AGGAAATTAATTCATCAGGCATATTGG
58.409
33.333
0.10
0.00
39.98
3.16
1990
2167
3.555527
AGATTTTAGAGCCGGGGTTAC
57.444
47.619
2.18
0.00
0.00
2.50
2007
2184
7.639113
TCTTGGTGTTGTTGAACTAAAAGAT
57.361
32.000
0.00
0.00
32.79
2.40
2026
2203
5.592688
TGTTTGGGACTAAAGACTTTCTTGG
59.407
40.000
3.07
0.00
36.71
3.61
2103
2280
8.843262
TGATTGAGCTATTATCCAGTCAAATTG
58.157
33.333
0.00
0.00
0.00
2.32
2104
2281
8.985315
TGATTGAGCTATTATCCAGTCAAATT
57.015
30.769
0.00
0.00
0.00
1.82
2123
2374
9.613428
ACCTACGATTATGAATTTTCTGATTGA
57.387
29.630
0.00
0.00
0.00
2.57
2156
2407
8.231692
TCTTTTTGACCATCTTATGTGTCAAA
57.768
30.769
20.50
20.50
46.39
2.69
2189
2440
1.080569
GGCAACATCCAAACAGCCG
60.081
57.895
0.00
0.00
31.88
5.52
2279
2530
3.632145
CAGCTCACTTTTACACCAAACCT
59.368
43.478
0.00
0.00
0.00
3.50
2290
2541
1.546548
GGCCTTCCTCAGCTCACTTTT
60.547
52.381
0.00
0.00
0.00
2.27
2331
2583
4.895668
ATGTTTGGATGAGCACCAATTT
57.104
36.364
0.00
0.00
45.09
1.82
2447
2700
4.799564
AAATGAAATAAAGAAGCGGGCA
57.200
36.364
0.00
0.00
0.00
5.36
2921
3220
8.265055
AGAACATACTTTAGCAGCTATAACCAA
58.735
33.333
2.02
0.00
0.00
3.67
3050
3349
0.820871
AAACGCCACAACACCAATGT
59.179
45.000
0.00
0.00
42.46
2.71
3345
3644
8.232913
AGGACTCAATAACTTACTTTGCAAAA
57.767
30.769
13.84
0.00
0.00
2.44
3346
3645
7.307751
CGAGGACTCAATAACTTACTTTGCAAA
60.308
37.037
12.14
12.14
0.00
3.68
3378
3677
1.603802
CACGGTGTGAACAGAATGCTT
59.396
47.619
0.00
0.00
35.74
3.91
3616
3915
2.277084
GTGGTAAGGCGGACTTGTATG
58.723
52.381
6.30
0.00
40.37
2.39
3723
4022
2.394930
CCACAACATGGTATGGTCGA
57.605
50.000
0.00
0.00
44.46
4.20
3830
6079
8.267620
TGAACAAATCTGTCACGATATGATTT
57.732
30.769
0.00
0.00
40.28
2.17
3831
6080
7.011763
CCTGAACAAATCTGTCACGATATGATT
59.988
37.037
0.00
0.00
40.28
2.57
3832
6081
6.481313
CCTGAACAAATCTGTCACGATATGAT
59.519
38.462
0.00
0.00
40.28
2.45
3833
6082
5.812127
CCTGAACAAATCTGTCACGATATGA
59.188
40.000
0.00
0.00
33.45
2.15
3834
6083
5.812127
TCCTGAACAAATCTGTCACGATATG
59.188
40.000
0.00
0.00
33.45
1.78
3835
6084
5.977635
TCCTGAACAAATCTGTCACGATAT
58.022
37.500
0.00
0.00
33.45
1.63
3836
6085
5.400066
TCCTGAACAAATCTGTCACGATA
57.600
39.130
0.00
0.00
33.45
2.92
3837
6086
4.248859
CTCCTGAACAAATCTGTCACGAT
58.751
43.478
0.00
0.00
33.45
3.73
3851
6100
6.056236
AGAAAAGAAACTGTACCTCCTGAAC
58.944
40.000
0.00
0.00
0.00
3.18
3874
6123
9.553064
ACCTATAGAAGCACAATATCTTCAAAG
57.447
33.333
0.00
0.16
40.72
2.77
3878
6127
6.876257
CCCACCTATAGAAGCACAATATCTTC
59.124
42.308
0.00
0.00
39.08
2.87
3953
6202
5.389859
TCTCACAAATTTGCGATTCCAAT
57.610
34.783
18.12
0.00
0.00
3.16
3954
6203
4.844998
TCTCACAAATTTGCGATTCCAA
57.155
36.364
18.12
0.00
0.00
3.53
4022
6278
1.783284
TCAGCAGCTAGAACAACACG
58.217
50.000
0.00
0.00
0.00
4.49
4068
6629
0.179062
GAGCTCATGGATTGGCGACT
60.179
55.000
9.40
0.00
0.00
4.18
4093
6654
6.783708
AAATACTGGTTGGTTCAAGACAAA
57.216
33.333
0.00
0.00
0.00
2.83
4226
6787
9.573166
CACCCAGTTTCCAGATTCATATTTATA
57.427
33.333
0.00
0.00
0.00
0.98
4227
6788
7.014615
GCACCCAGTTTCCAGATTCATATTTAT
59.985
37.037
0.00
0.00
0.00
1.40
4238
6799
0.108585
GTCAGCACCCAGTTTCCAGA
59.891
55.000
0.00
0.00
0.00
3.86
4257
6818
9.438291
CGTTGCCTATAATAAAAATGAAGACAG
57.562
33.333
0.00
0.00
0.00
3.51
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.