Multiple sequence alignment - TraesCS2B01G455400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G455400 chr2B 100.000 3478 0 0 1 3478 649973553 649977030 0.000000e+00 6423.0
1 TraesCS2B01G455400 chr2B 85.714 161 23 0 1613 1773 649670205 649670365 1.660000e-38 171.0
2 TraesCS2B01G455400 chr2B 100.000 28 0 0 2869 2896 649976448 649976475 6.000000e-03 52.8
3 TraesCS2B01G455400 chr2D 89.724 2569 178 32 1 2505 544581529 544584075 0.000000e+00 3203.0
4 TraesCS2B01G455400 chr2D 96.537 231 6 1 2502 2730 544584213 544584443 7.040000e-102 381.0
5 TraesCS2B01G455400 chr2D 83.851 161 26 0 1613 1773 544259889 544260049 1.670000e-33 154.0
6 TraesCS2B01G455400 chr2A 93.774 1044 39 10 824 1851 686822555 686823588 0.000000e+00 1544.0
7 TraesCS2B01G455400 chr2A 85.835 946 74 33 1871 2779 686823641 686824563 0.000000e+00 950.0
8 TraesCS2B01G455400 chr2A 90.367 218 13 4 265 474 686816442 686816659 2.640000e-71 279.0
9 TraesCS2B01G455400 chr2A 91.500 200 15 2 626 823 686816728 686816927 1.230000e-69 274.0
10 TraesCS2B01G455400 chr2A 75.992 529 88 33 1617 2120 686777750 686777236 1.610000e-58 237.0
11 TraesCS2B01G455400 chr2A 85.000 200 16 7 73 269 686815980 686816168 1.270000e-44 191.0
12 TraesCS2B01G455400 chr2A 84.472 161 25 0 1613 1773 686797566 686797726 3.590000e-35 159.0
13 TraesCS2B01G455400 chr5A 88.966 580 60 3 2897 3475 3238150 3238726 0.000000e+00 713.0
14 TraesCS2B01G455400 chr5A 86.411 574 73 5 2905 3478 311537429 311536861 1.060000e-174 623.0
15 TraesCS2B01G455400 chr4B 89.336 572 55 5 2905 3475 441667556 441668122 0.000000e+00 713.0
16 TraesCS2B01G455400 chr4B 82.934 334 51 4 2946 3276 23401194 23400864 2.620000e-76 296.0
17 TraesCS2B01G455400 chr3A 87.805 574 65 4 2905 3478 705315861 705315293 0.000000e+00 667.0
18 TraesCS2B01G455400 chr3A 81.625 566 95 7 2911 3475 38336488 38337045 8.800000e-126 460.0
19 TraesCS2B01G455400 chr5B 87.175 577 68 5 2900 3475 325805871 325806442 0.000000e+00 651.0
20 TraesCS2B01G455400 chr5B 86.137 541 72 2 2933 3472 325744501 325745039 6.470000e-162 580.0
21 TraesCS2B01G455400 chr5B 83.824 68 10 1 377 443 455756151 455756084 2.900000e-06 63.9
22 TraesCS2B01G455400 chr3D 82.343 572 95 6 2905 3475 28987128 28987694 3.120000e-135 492.0
23 TraesCS2B01G455400 chr3D 81.308 428 68 11 2910 3331 57172854 57172433 1.550000e-88 337.0
24 TraesCS2B01G455400 chr3B 80.541 591 103 8 2888 3475 49411343 49411924 8.860000e-121 444.0
25 TraesCS2B01G455400 chr6A 82.540 189 29 4 1875 2061 571683601 571683787 2.780000e-36 163.0
26 TraesCS2B01G455400 chr6D 82.011 189 30 4 1875 2061 426984491 426984677 1.290000e-34 158.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G455400 chr2B 649973553 649977030 3477 False 3237.9 6423 100.000000 1 3478 2 chr2B.!!$F2 3477
1 TraesCS2B01G455400 chr2D 544581529 544584443 2914 False 1792.0 3203 93.130500 1 2730 2 chr2D.!!$F2 2729
2 TraesCS2B01G455400 chr2A 686822555 686824563 2008 False 1247.0 1544 89.804500 824 2779 2 chr2A.!!$F3 1955
3 TraesCS2B01G455400 chr2A 686815980 686816927 947 False 248.0 279 88.955667 73 823 3 chr2A.!!$F2 750
4 TraesCS2B01G455400 chr2A 686777236 686777750 514 True 237.0 237 75.992000 1617 2120 1 chr2A.!!$R1 503
5 TraesCS2B01G455400 chr5A 3238150 3238726 576 False 713.0 713 88.966000 2897 3475 1 chr5A.!!$F1 578
6 TraesCS2B01G455400 chr5A 311536861 311537429 568 True 623.0 623 86.411000 2905 3478 1 chr5A.!!$R1 573
7 TraesCS2B01G455400 chr4B 441667556 441668122 566 False 713.0 713 89.336000 2905 3475 1 chr4B.!!$F1 570
8 TraesCS2B01G455400 chr3A 705315293 705315861 568 True 667.0 667 87.805000 2905 3478 1 chr3A.!!$R1 573
9 TraesCS2B01G455400 chr3A 38336488 38337045 557 False 460.0 460 81.625000 2911 3475 1 chr3A.!!$F1 564
10 TraesCS2B01G455400 chr5B 325805871 325806442 571 False 651.0 651 87.175000 2900 3475 1 chr5B.!!$F2 575
11 TraesCS2B01G455400 chr5B 325744501 325745039 538 False 580.0 580 86.137000 2933 3472 1 chr5B.!!$F1 539
12 TraesCS2B01G455400 chr3D 28987128 28987694 566 False 492.0 492 82.343000 2905 3475 1 chr3D.!!$F1 570
13 TraesCS2B01G455400 chr3B 49411343 49411924 581 False 444.0 444 80.541000 2888 3475 1 chr3B.!!$F1 587

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
936 1254 0.304705 CCATCTTGCGTCGCCATTAC 59.695 55.0 15.88 0.0 0.0 1.89 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2751 3371 0.535102 ACCACGTTCAGCTTGGAAGG 60.535 55.0 8.39 6.66 38.67 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 6.061441 TGGTACATGTATGATCCAATTGACC 58.939 40.000 9.18 3.78 33.86 4.02
45 46 7.065120 TCCAATTGACCAAATTCACAAGATT 57.935 32.000 7.12 0.00 36.28 2.40
47 48 7.992033 TCCAATTGACCAAATTCACAAGATTTT 59.008 29.630 7.12 0.00 36.28 1.82
49 50 8.828644 CAATTGACCAAATTCACAAGATTTTCA 58.171 29.630 0.00 0.00 36.28 2.69
208 211 0.976641 TTGAGCTCATCTCGGTTGGT 59.023 50.000 19.04 0.00 44.86 3.67
218 221 2.695359 TCTCGGTTGGTTGACTTATGC 58.305 47.619 0.00 0.00 0.00 3.14
219 222 2.037902 TCTCGGTTGGTTGACTTATGCA 59.962 45.455 0.00 0.00 0.00 3.96
225 228 5.564651 CGGTTGGTTGACTTATGCAATCTTT 60.565 40.000 0.00 0.00 0.00 2.52
299 581 6.038603 TCTCAACCGAATCAAATGATGGATTC 59.961 38.462 6.74 9.01 43.68 2.52
312 594 2.299993 TGGATTCGAGCTAACTGCAG 57.700 50.000 13.48 13.48 45.94 4.41
360 658 3.857157 TGCAACAAACCTCTAGAACCT 57.143 42.857 0.00 0.00 0.00 3.50
373 671 3.755378 TCTAGAACCTGTAGTTGGTCGTC 59.245 47.826 0.00 0.00 39.40 4.20
375 673 2.557490 AGAACCTGTAGTTGGTCGTCTC 59.443 50.000 0.00 0.00 39.40 3.36
425 724 0.533491 CTCAACCGTCCGGACCATAA 59.467 55.000 28.52 9.80 38.96 1.90
455 761 3.242349 ACGTGTTTTGTTATTCAACGCGA 60.242 39.130 15.93 0.00 37.86 5.87
477 783 1.955529 CTGCATTGGTCCGTTCGACG 61.956 60.000 0.00 0.00 42.99 5.12
489 795 4.912485 TCGACGGCCCAAACGCAA 62.912 61.111 0.00 0.00 34.00 4.85
490 796 3.955101 CGACGGCCCAAACGCAAA 61.955 61.111 0.00 0.00 34.00 3.68
491 797 2.413765 GACGGCCCAAACGCAAAA 59.586 55.556 0.00 0.00 34.00 2.44
492 798 1.227002 GACGGCCCAAACGCAAAAA 60.227 52.632 0.00 0.00 34.00 1.94
494 800 0.674534 ACGGCCCAAACGCAAAAATA 59.325 45.000 0.00 0.00 34.00 1.40
495 801 1.068741 ACGGCCCAAACGCAAAAATAA 59.931 42.857 0.00 0.00 34.00 1.40
496 802 2.289133 ACGGCCCAAACGCAAAAATAAT 60.289 40.909 0.00 0.00 34.00 1.28
497 803 3.056749 ACGGCCCAAACGCAAAAATAATA 60.057 39.130 0.00 0.00 34.00 0.98
498 804 3.927142 CGGCCCAAACGCAAAAATAATAA 59.073 39.130 0.00 0.00 0.00 1.40
499 805 4.568760 CGGCCCAAACGCAAAAATAATAAT 59.431 37.500 0.00 0.00 0.00 1.28
500 806 5.064071 CGGCCCAAACGCAAAAATAATAATT 59.936 36.000 0.00 0.00 0.00 1.40
501 807 6.482835 GGCCCAAACGCAAAAATAATAATTC 58.517 36.000 0.00 0.00 0.00 2.17
502 808 6.092807 GGCCCAAACGCAAAAATAATAATTCA 59.907 34.615 0.00 0.00 0.00 2.57
536 842 3.699134 CTAGGGAAGGGGGTTGCGC 62.699 68.421 0.00 0.00 0.00 6.09
562 868 3.842925 AACCGTTGCCATGTCCGCT 62.843 57.895 0.00 0.00 0.00 5.52
564 870 2.625823 CCGTTGCCATGTCCGCTTT 61.626 57.895 0.00 0.00 0.00 3.51
579 885 1.401905 CGCTTTTGACTAATCTGGCCC 59.598 52.381 0.00 0.00 0.00 5.80
581 887 3.026694 GCTTTTGACTAATCTGGCCCAT 58.973 45.455 0.00 0.00 0.00 4.00
585 891 4.314522 TTGACTAATCTGGCCCATCAAA 57.685 40.909 0.00 0.00 0.00 2.69
599 905 2.805671 CCATCAAAAACCTTTTTCCCGC 59.194 45.455 0.00 0.00 38.23 6.13
615 921 3.202001 GCGCCCGCATGCTTTCTA 61.202 61.111 17.13 0.00 41.49 2.10
679 985 0.386476 ACGGCGAGCGGTGAAATATA 59.614 50.000 16.62 0.00 0.00 0.86
704 1010 8.962884 ATTTGCATCAGTATAACACATCAGTA 57.037 30.769 0.00 0.00 0.00 2.74
705 1011 8.424274 TTTGCATCAGTATAACACATCAGTAG 57.576 34.615 0.00 0.00 0.00 2.57
936 1254 0.304705 CCATCTTGCGTCGCCATTAC 59.695 55.000 15.88 0.00 0.00 1.89
937 1255 1.290203 CATCTTGCGTCGCCATTACT 58.710 50.000 15.88 0.00 0.00 2.24
938 1256 1.004610 CATCTTGCGTCGCCATTACTG 60.005 52.381 15.88 1.14 0.00 2.74
1083 1410 1.563435 CGGCATCGATCCTCATGTGC 61.563 60.000 0.00 0.00 39.00 4.57
1104 1431 1.917336 TTGACCCCGGTAATCCTGCC 61.917 60.000 0.00 0.00 0.00 4.85
1149 1481 2.380084 TATCCTTCACTTGACCGTGC 57.620 50.000 0.00 0.00 34.92 5.34
1150 1482 0.321653 ATCCTTCACTTGACCGTGCC 60.322 55.000 0.00 0.00 34.92 5.01
1151 1483 1.966451 CCTTCACTTGACCGTGCCC 60.966 63.158 0.00 0.00 34.92 5.36
1152 1484 2.280524 TTCACTTGACCGTGCCCG 60.281 61.111 0.00 0.00 34.92 6.13
1193 1525 3.570550 ACTACAGTCACTCACTTCACTCC 59.429 47.826 0.00 0.00 30.26 3.85
1194 1526 1.338337 ACAGTCACTCACTTCACTCCG 59.662 52.381 0.00 0.00 30.26 4.63
1329 1661 2.925162 GATACTGTGGGGGCAGACGC 62.925 65.000 0.00 0.00 39.62 5.19
1331 1663 4.641645 CTGTGGGGGCAGACGCAA 62.642 66.667 0.00 0.00 41.24 4.85
1366 1698 3.822192 CGGCGACCAGACCATCGA 61.822 66.667 0.00 0.00 40.86 3.59
1368 1700 2.711922 GGCGACCAGACCATCGAGT 61.712 63.158 0.00 0.00 40.86 4.18
1428 1760 1.203313 AGACCTCCTACCTCTTTGCCA 60.203 52.381 0.00 0.00 0.00 4.92
1569 1906 9.216117 AGTTCCTCGCAAATTAATGGTATATAC 57.784 33.333 4.14 4.14 0.00 1.47
1798 2135 2.025155 GACGAGATCCTGTAAGCCTCA 58.975 52.381 0.00 0.00 0.00 3.86
1804 2141 3.964031 AGATCCTGTAAGCCTCACCTTAG 59.036 47.826 0.00 0.00 0.00 2.18
1855 2286 6.705302 TGTCTGAAACTCTGAATGCTAAGAT 58.295 36.000 0.00 0.00 0.00 2.40
1858 2289 9.973450 GTCTGAAACTCTGAATGCTAAGATATA 57.027 33.333 0.00 0.00 0.00 0.86
1869 2300 9.851686 TGAATGCTAAGATATAATTGGTCTGTT 57.148 29.630 0.00 0.00 0.00 3.16
2392 2836 9.211485 CTTGGCAAGAACATTATTTCATTCTTT 57.789 29.630 22.64 0.00 38.93 2.52
2431 2875 5.988310 ATGGCAATTCAGAGTTTGATTCA 57.012 34.783 0.00 0.00 35.27 2.57
2438 2882 7.473366 CAATTCAGAGTTTGATTCATGGAGAG 58.527 38.462 0.00 0.00 35.27 3.20
2441 2885 6.772605 TCAGAGTTTGATTCATGGAGAGAAA 58.227 36.000 0.00 0.00 0.00 2.52
2572 3188 5.821470 TCGTACTACTAACATAGAGCAAGCT 59.179 40.000 0.00 0.00 0.00 3.74
2644 3260 1.810030 GGGAGTAAAGACGCCGCTG 60.810 63.158 0.00 0.00 45.99 5.18
2688 3307 1.071471 AAGTTCCGAGGCCAGTGTG 59.929 57.895 5.01 0.00 0.00 3.82
2741 3361 1.287730 GATGCCGCGATCTGCTTAGG 61.288 60.000 8.23 3.72 43.27 2.69
2756 3376 3.372660 CTTAGGTAGCACGATCCTTCC 57.627 52.381 0.00 0.00 33.34 3.46
2757 3377 2.447408 TAGGTAGCACGATCCTTCCA 57.553 50.000 0.00 0.00 33.34 3.53
2762 3382 0.392193 AGCACGATCCTTCCAAGCTG 60.392 55.000 0.00 0.00 0.00 4.24
2765 3385 1.734465 CACGATCCTTCCAAGCTGAAC 59.266 52.381 0.00 0.00 0.00 3.18
2773 3393 0.034337 TCCAAGCTGAACGTGGTACC 59.966 55.000 4.43 4.43 46.93 3.34
2775 3395 0.034896 CAAGCTGAACGTGGTACCCT 59.965 55.000 10.07 0.00 0.00 4.34
2777 3397 1.079336 GCTGAACGTGGTACCCTCC 60.079 63.158 10.07 0.00 0.00 4.30
2778 3398 1.214589 CTGAACGTGGTACCCTCCG 59.785 63.158 10.07 11.57 0.00 4.63
2779 3399 1.228521 TGAACGTGGTACCCTCCGA 60.229 57.895 18.93 0.00 0.00 4.55
2780 3400 0.612732 TGAACGTGGTACCCTCCGAT 60.613 55.000 18.93 9.73 0.00 4.18
2781 3401 0.101939 GAACGTGGTACCCTCCGATC 59.898 60.000 18.93 13.90 0.00 3.69
2782 3402 0.612732 AACGTGGTACCCTCCGATCA 60.613 55.000 18.93 0.00 0.00 2.92
2783 3403 0.396695 ACGTGGTACCCTCCGATCAT 60.397 55.000 18.93 0.00 0.00 2.45
2784 3404 1.133699 ACGTGGTACCCTCCGATCATA 60.134 52.381 18.93 0.00 0.00 2.15
2785 3405 2.168496 CGTGGTACCCTCCGATCATAT 58.832 52.381 10.07 0.00 0.00 1.78
2786 3406 2.561419 CGTGGTACCCTCCGATCATATT 59.439 50.000 10.07 0.00 0.00 1.28
2787 3407 3.760151 CGTGGTACCCTCCGATCATATTA 59.240 47.826 10.07 0.00 0.00 0.98
2788 3408 4.219070 CGTGGTACCCTCCGATCATATTAA 59.781 45.833 10.07 0.00 0.00 1.40
2789 3409 5.476614 GTGGTACCCTCCGATCATATTAAC 58.523 45.833 10.07 0.00 0.00 2.01
2790 3410 5.245526 GTGGTACCCTCCGATCATATTAACT 59.754 44.000 10.07 0.00 0.00 2.24
2791 3411 5.245301 TGGTACCCTCCGATCATATTAACTG 59.755 44.000 10.07 0.00 0.00 3.16
2792 3412 5.245526 GGTACCCTCCGATCATATTAACTGT 59.754 44.000 0.00 0.00 0.00 3.55
2793 3413 6.435277 GGTACCCTCCGATCATATTAACTGTA 59.565 42.308 0.00 0.00 0.00 2.74
2794 3414 6.342338 ACCCTCCGATCATATTAACTGTAC 57.658 41.667 0.00 0.00 0.00 2.90
2795 3415 5.245526 ACCCTCCGATCATATTAACTGTACC 59.754 44.000 0.00 0.00 0.00 3.34
2796 3416 5.480772 CCCTCCGATCATATTAACTGTACCT 59.519 44.000 0.00 0.00 0.00 3.08
2797 3417 6.350277 CCCTCCGATCATATTAACTGTACCTC 60.350 46.154 0.00 0.00 0.00 3.85
2798 3418 6.208797 CCTCCGATCATATTAACTGTACCTCA 59.791 42.308 0.00 0.00 0.00 3.86
2799 3419 7.255836 CCTCCGATCATATTAACTGTACCTCAA 60.256 40.741 0.00 0.00 0.00 3.02
2800 3420 8.014070 TCCGATCATATTAACTGTACCTCAAA 57.986 34.615 0.00 0.00 0.00 2.69
2801 3421 8.479689 TCCGATCATATTAACTGTACCTCAAAA 58.520 33.333 0.00 0.00 0.00 2.44
2802 3422 8.765219 CCGATCATATTAACTGTACCTCAAAAG 58.235 37.037 0.00 0.00 0.00 2.27
2834 3454 9.627395 TTTTTAAACGAGTCAAAAGATTTGTCA 57.373 25.926 0.00 0.00 0.00 3.58
2835 3455 9.796120 TTTTAAACGAGTCAAAAGATTTGTCAT 57.204 25.926 0.00 0.00 0.00 3.06
2836 3456 9.796120 TTTAAACGAGTCAAAAGATTTGTCATT 57.204 25.926 0.00 0.00 0.00 2.57
2837 3457 7.914537 AAACGAGTCAAAAGATTTGTCATTC 57.085 32.000 0.00 0.00 0.00 2.67
2838 3458 6.867662 ACGAGTCAAAAGATTTGTCATTCT 57.132 33.333 0.00 0.00 0.00 2.40
2839 3459 6.892691 ACGAGTCAAAAGATTTGTCATTCTC 58.107 36.000 0.00 0.00 0.00 2.87
2840 3460 6.483307 ACGAGTCAAAAGATTTGTCATTCTCA 59.517 34.615 0.00 0.00 0.00 3.27
2841 3461 7.173907 ACGAGTCAAAAGATTTGTCATTCTCAT 59.826 33.333 0.00 0.00 0.00 2.90
2842 3462 8.019669 CGAGTCAAAAGATTTGTCATTCTCATT 58.980 33.333 3.06 0.00 0.00 2.57
2843 3463 9.125906 GAGTCAAAAGATTTGTCATTCTCATTG 57.874 33.333 3.06 0.00 0.00 2.82
2844 3464 8.853126 AGTCAAAAGATTTGTCATTCTCATTGA 58.147 29.630 3.06 8.72 31.10 2.57
2845 3465 9.635520 GTCAAAAGATTTGTCATTCTCATTGAT 57.364 29.630 12.57 0.00 33.78 2.57
2850 3470 9.902684 AAGATTTGTCATTCTCATTGATAGAGT 57.097 29.630 0.00 0.00 34.73 3.24
2851 3471 9.902684 AGATTTGTCATTCTCATTGATAGAGTT 57.097 29.630 0.00 0.00 34.73 3.01
2852 3472 9.932699 GATTTGTCATTCTCATTGATAGAGTTG 57.067 33.333 0.00 0.00 34.73 3.16
2853 3473 6.915544 TGTCATTCTCATTGATAGAGTTGC 57.084 37.500 0.00 0.00 34.73 4.17
2854 3474 5.819379 TGTCATTCTCATTGATAGAGTTGCC 59.181 40.000 0.00 0.00 34.73 4.52
2855 3475 5.238214 GTCATTCTCATTGATAGAGTTGCCC 59.762 44.000 0.00 0.00 34.73 5.36
2856 3476 3.459232 TCTCATTGATAGAGTTGCCCG 57.541 47.619 0.00 0.00 34.73 6.13
2857 3477 2.103094 TCTCATTGATAGAGTTGCCCGG 59.897 50.000 0.00 0.00 34.73 5.73
2858 3478 1.837439 TCATTGATAGAGTTGCCCGGT 59.163 47.619 0.00 0.00 0.00 5.28
2859 3479 2.238646 TCATTGATAGAGTTGCCCGGTT 59.761 45.455 0.00 0.00 0.00 4.44
2860 3480 3.452990 TCATTGATAGAGTTGCCCGGTTA 59.547 43.478 0.00 0.00 0.00 2.85
2861 3481 3.985019 TTGATAGAGTTGCCCGGTTAA 57.015 42.857 0.00 0.00 0.00 2.01
2862 3482 4.497291 TTGATAGAGTTGCCCGGTTAAT 57.503 40.909 0.00 0.00 0.00 1.40
2863 3483 4.497291 TGATAGAGTTGCCCGGTTAATT 57.503 40.909 0.00 0.00 0.00 1.40
2864 3484 5.617528 TGATAGAGTTGCCCGGTTAATTA 57.382 39.130 0.00 0.00 0.00 1.40
2865 3485 5.607477 TGATAGAGTTGCCCGGTTAATTAG 58.393 41.667 0.00 0.00 0.00 1.73
2866 3486 5.364446 TGATAGAGTTGCCCGGTTAATTAGA 59.636 40.000 0.00 0.00 0.00 2.10
2867 3487 4.138487 AGAGTTGCCCGGTTAATTAGAG 57.862 45.455 0.00 0.00 0.00 2.43
2868 3488 3.773119 AGAGTTGCCCGGTTAATTAGAGA 59.227 43.478 0.00 0.00 0.00 3.10
2869 3489 4.224370 AGAGTTGCCCGGTTAATTAGAGAA 59.776 41.667 0.00 0.00 0.00 2.87
2870 3490 4.913784 AGTTGCCCGGTTAATTAGAGAAA 58.086 39.130 0.00 0.00 0.00 2.52
2871 3491 5.318630 AGTTGCCCGGTTAATTAGAGAAAA 58.681 37.500 0.00 0.00 0.00 2.29
2872 3492 5.771165 AGTTGCCCGGTTAATTAGAGAAAAA 59.229 36.000 0.00 0.00 0.00 1.94
2873 3493 5.632244 TGCCCGGTTAATTAGAGAAAAAC 57.368 39.130 0.00 0.00 0.00 2.43
2874 3494 4.460034 TGCCCGGTTAATTAGAGAAAAACC 59.540 41.667 0.00 0.00 36.95 3.27
2882 3502 9.121517 GGTTAATTAGAGAAAAACCGTAAAAGC 57.878 33.333 0.00 0.00 31.09 3.51
2883 3503 9.121517 GTTAATTAGAGAAAAACCGTAAAAGCC 57.878 33.333 0.00 0.00 0.00 4.35
2884 3504 7.520451 AATTAGAGAAAAACCGTAAAAGCCT 57.480 32.000 0.00 0.00 0.00 4.58
2885 3505 8.625786 AATTAGAGAAAAACCGTAAAAGCCTA 57.374 30.769 0.00 0.00 0.00 3.93
2886 3506 7.662604 TTAGAGAAAAACCGTAAAAGCCTAG 57.337 36.000 0.00 0.00 0.00 3.02
2887 3507 5.861727 AGAGAAAAACCGTAAAAGCCTAGA 58.138 37.500 0.00 0.00 0.00 2.43
2888 3508 6.473758 AGAGAAAAACCGTAAAAGCCTAGAT 58.526 36.000 0.00 0.00 0.00 1.98
2889 3509 6.940867 AGAGAAAAACCGTAAAAGCCTAGATT 59.059 34.615 0.00 0.00 0.00 2.40
2890 3510 8.098912 AGAGAAAAACCGTAAAAGCCTAGATTA 58.901 33.333 0.00 0.00 0.00 1.75
2891 3511 8.803397 AGAAAAACCGTAAAAGCCTAGATTAT 57.197 30.769 0.00 0.00 0.00 1.28
2892 3512 9.895138 AGAAAAACCGTAAAAGCCTAGATTATA 57.105 29.630 0.00 0.00 0.00 0.98
2903 3523 7.933215 AAGCCTAGATTATAACAAAAACCGT 57.067 32.000 0.00 0.00 0.00 4.83
2959 3583 2.499214 GACAACCTGGCCACAAACA 58.501 52.632 0.00 0.00 0.00 2.83
3001 3626 2.244117 GAGGACATGGCAGCTCCGAA 62.244 60.000 0.00 0.00 37.80 4.30
3002 3627 1.153086 GGACATGGCAGCTCCGAAT 60.153 57.895 0.00 0.00 37.80 3.34
3165 3790 2.140065 TCTCTGTCACAGCACGAAAG 57.860 50.000 0.00 0.00 0.00 2.62
3169 3794 0.461870 TGTCACAGCACGAAAGCAGT 60.462 50.000 0.00 0.00 36.85 4.40
3170 3795 4.907946 CACAGCACGAAAGCAGTG 57.092 55.556 9.36 9.36 43.80 3.66
3188 3813 1.268992 TGTAGGCGTACCCATTGGCT 61.269 55.000 13.68 1.76 41.76 4.75
3200 3825 3.605749 ATTGGCTCACCGGACCGTG 62.606 63.158 9.46 11.26 39.70 4.94
3220 3845 1.003580 GGACATCAGAAGGACAAGCCA 59.996 52.381 0.00 0.00 40.02 4.75
3226 3851 2.027625 GAAGGACAAGCCACGACCG 61.028 63.158 0.00 0.00 40.02 4.79
3244 3869 3.477224 GAGCTCCGCTCGCCACTAG 62.477 68.421 0.87 0.00 45.85 2.57
3245 3870 3.518998 GCTCCGCTCGCCACTAGA 61.519 66.667 0.00 0.00 0.00 2.43
3276 3901 2.594962 CGAGTCGCAACGCCAAACT 61.595 57.895 0.00 0.00 0.00 2.66
3283 3908 3.591835 AACGCCAAACTGCCCACG 61.592 61.111 0.00 0.00 0.00 4.94
3306 3931 0.467474 TCGGACAGATACCAGCCGAT 60.467 55.000 0.00 0.00 45.18 4.18
3321 3946 0.109827 CCGATCGCAATGTTGTGCAA 60.110 50.000 10.32 0.00 45.19 4.08
3350 3975 1.322538 GCCGGAAGCACCAATGGAAT 61.323 55.000 5.05 0.00 42.97 3.01
3357 3982 4.161001 GGAAGCACCAATGGAATCAAGATT 59.839 41.667 6.16 0.00 38.79 2.40
3358 3983 4.730949 AGCACCAATGGAATCAAGATTG 57.269 40.909 6.16 0.00 0.00 2.67
3404 4029 2.356553 AACGCTAAAGACGCCGCA 60.357 55.556 0.00 0.00 0.00 5.69
3475 4100 1.078848 GGAGTTGAGGATGCGCAGT 60.079 57.895 18.32 2.08 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 6.709846 CCAATGGGTACATGTTGTTTCAAAAT 59.290 34.615 2.30 0.00 37.40 1.82
225 228 5.051153 TGTAAGTACACGCATGACAGAAAA 58.949 37.500 0.00 0.00 0.00 2.29
229 232 2.923655 CCTGTAAGTACACGCATGACAG 59.076 50.000 0.00 0.00 34.07 3.51
299 581 2.346847 GTGATTCACTGCAGTTAGCTCG 59.653 50.000 18.94 4.77 45.94 5.03
360 658 1.246056 CCCCGAGACGACCAACTACA 61.246 60.000 0.00 0.00 0.00 2.74
373 671 1.521681 GGCGTTGAAGATCCCCGAG 60.522 63.158 0.00 0.00 0.00 4.63
375 673 2.890474 CGGCGTTGAAGATCCCCG 60.890 66.667 0.00 0.00 0.00 5.73
425 724 0.107557 AACAAAACACGTCCGGACCT 60.108 50.000 28.52 14.95 0.00 3.85
455 761 0.744414 CGAACGGACCAATGCAGGAT 60.744 55.000 0.00 0.00 0.00 3.24
477 783 6.092807 TGAATTATTATTTTTGCGTTTGGGCC 59.907 34.615 0.00 0.00 0.00 5.80
496 802 8.582437 CCTAGTATGTCTCCGGTTTATGAATTA 58.418 37.037 0.00 0.00 0.00 1.40
497 803 7.442656 CCTAGTATGTCTCCGGTTTATGAATT 58.557 38.462 0.00 0.00 0.00 2.17
498 804 6.014499 CCCTAGTATGTCTCCGGTTTATGAAT 60.014 42.308 0.00 0.00 0.00 2.57
499 805 5.303589 CCCTAGTATGTCTCCGGTTTATGAA 59.696 44.000 0.00 0.00 0.00 2.57
500 806 4.831155 CCCTAGTATGTCTCCGGTTTATGA 59.169 45.833 0.00 0.00 0.00 2.15
501 807 4.831155 TCCCTAGTATGTCTCCGGTTTATG 59.169 45.833 0.00 0.00 0.00 1.90
502 808 5.070823 TCCCTAGTATGTCTCCGGTTTAT 57.929 43.478 0.00 0.00 0.00 1.40
516 822 0.979187 CGCAACCCCCTTCCCTAGTA 60.979 60.000 0.00 0.00 0.00 1.82
537 843 4.973055 TGGCAACGGTTCGGACGG 62.973 66.667 0.00 0.00 42.51 4.79
562 868 4.314522 TGATGGGCCAGATTAGTCAAAA 57.685 40.909 13.78 0.00 0.00 2.44
564 870 4.314522 TTTGATGGGCCAGATTAGTCAA 57.685 40.909 13.78 13.13 0.00 3.18
579 885 2.474735 CGCGGGAAAAAGGTTTTTGATG 59.525 45.455 5.17 0.00 40.21 3.07
581 887 1.803252 GCGCGGGAAAAAGGTTTTTGA 60.803 47.619 8.83 0.00 40.21 2.69
585 891 2.732016 GGCGCGGGAAAAAGGTTT 59.268 55.556 8.83 0.00 0.00 3.27
599 905 3.017323 CTAGAAAGCATGCGGGCG 58.983 61.111 13.01 0.00 39.27 6.13
614 920 2.270205 GCAGCTGGCTTCTGGCTA 59.730 61.111 17.12 0.00 41.46 3.93
679 985 7.870509 ACTGATGTGTTATACTGATGCAAAT 57.129 32.000 0.00 0.00 0.00 2.32
760 1075 6.601332 ACATTGGAAATATGGACGGTTAGAT 58.399 36.000 0.00 0.00 0.00 1.98
761 1076 5.996644 ACATTGGAAATATGGACGGTTAGA 58.003 37.500 0.00 0.00 0.00 2.10
762 1077 6.017934 CAGACATTGGAAATATGGACGGTTAG 60.018 42.308 0.00 0.00 0.00 2.34
765 1080 4.199310 CAGACATTGGAAATATGGACGGT 58.801 43.478 0.00 0.00 0.00 4.83
767 1084 3.879295 AGCAGACATTGGAAATATGGACG 59.121 43.478 0.00 0.00 0.00 4.79
768 1085 5.008415 CAGAGCAGACATTGGAAATATGGAC 59.992 44.000 0.00 0.00 0.00 4.02
809 1126 2.996249 ATACTGCATCTGTGACTGGG 57.004 50.000 0.00 0.00 0.00 4.45
936 1254 1.140852 TGTTGGAGGGTTCACAGTCAG 59.859 52.381 0.00 0.00 0.00 3.51
937 1255 1.208706 TGTTGGAGGGTTCACAGTCA 58.791 50.000 0.00 0.00 0.00 3.41
938 1256 2.568623 ATGTTGGAGGGTTCACAGTC 57.431 50.000 0.00 0.00 0.00 3.51
1002 1329 4.994852 TCTTGGAGGATGTAAACAAGTTCG 59.005 41.667 0.00 0.00 39.49 3.95
1083 1410 1.967319 CAGGATTACCGGGGTCAATG 58.033 55.000 6.32 0.06 41.83 2.82
1104 1431 0.455295 GACTCGACTGAGAAGGTGCG 60.455 60.000 0.00 0.00 45.57 5.34
1194 1526 2.124736 TAACGCCATGGCTCCTGC 60.125 61.111 33.07 7.25 39.32 4.85
1208 1540 1.740905 GAGGCCCTCCGTAGCTAAC 59.259 63.158 0.00 0.00 37.47 2.34
1307 1639 0.252696 TCTGCCCCCACAGTATCTGT 60.253 55.000 0.00 0.00 46.51 3.41
1329 1661 1.771073 TTGCCGTCGTTGAGCACTTG 61.771 55.000 0.00 0.00 35.96 3.16
1331 1663 2.108157 TTGCCGTCGTTGAGCACT 59.892 55.556 0.00 0.00 35.96 4.40
1366 1698 1.672356 GCGTGGTCCAGCATCAACT 60.672 57.895 0.00 0.00 0.00 3.16
1368 1700 2.359850 GGCGTGGTCCAGCATCAA 60.360 61.111 13.25 0.00 34.54 2.57
1428 1760 1.135139 CTTGATGTCCACGTCGATCCT 59.865 52.381 0.00 0.00 34.69 3.24
1556 1890 7.010645 CACAGCACACAACGTATATACCATTAA 59.989 37.037 7.30 0.00 0.00 1.40
1569 1906 2.024588 GCACCACAGCACACAACG 59.975 61.111 0.00 0.00 0.00 4.10
1723 2060 0.976073 GGGTGGGATCGAACCAGAGA 60.976 60.000 14.28 0.00 39.00 3.10
1798 2135 2.043992 TGCTGGTGTGTACACTAAGGT 58.956 47.619 25.60 0.00 45.73 3.50
1819 2156 3.059884 GTTTCAGACATGTCGAGCAGAA 58.940 45.455 19.85 15.73 34.09 3.02
1855 2286 6.061022 TCCTGCAGAAACAGACCAATTATA 57.939 37.500 17.39 0.00 40.25 0.98
1858 2289 3.228188 TCCTGCAGAAACAGACCAATT 57.772 42.857 17.39 0.00 40.25 2.32
1861 2292 1.003580 GGATCCTGCAGAAACAGACCA 59.996 52.381 17.39 0.00 40.25 4.02
1864 2295 1.280133 CCAGGATCCTGCAGAAACAGA 59.720 52.381 32.97 3.29 42.35 3.41
1869 2300 0.547471 TCCACCAGGATCCTGCAGAA 60.547 55.000 32.97 16.77 42.35 3.02
1937 2368 2.751688 GGCTGGTACACCGGGAAA 59.248 61.111 6.32 0.00 42.72 3.13
1974 2405 2.659244 GTCGTCGGCGTTCCACAA 60.659 61.111 10.18 0.00 39.49 3.33
2043 2474 1.680207 GTAGTTCCGGAAGTAGGCGAT 59.320 52.381 28.32 6.24 0.00 4.58
2392 2836 8.804912 AATTGCCATTCATAAATAGCCAAAAA 57.195 26.923 0.00 0.00 29.53 1.94
2410 2854 5.336929 CCATGAATCAAACTCTGAATTGCCA 60.337 40.000 0.00 0.00 37.67 4.92
2483 2927 8.897457 ATAATTAATCTCTGCATCGTAGTACG 57.103 34.615 16.65 16.65 44.19 3.67
2670 3289 1.071471 CACACTGGCCTCGGAACTT 59.929 57.895 3.32 0.00 0.00 2.66
2688 3307 8.660373 CCTTCGCTTGGATAAATTATCAGTATC 58.340 37.037 14.19 0.00 36.91 2.24
2741 3361 1.134670 AGCTTGGAAGGATCGTGCTAC 60.135 52.381 0.00 0.00 0.00 3.58
2751 3371 0.535102 ACCACGTTCAGCTTGGAAGG 60.535 55.000 8.39 6.66 38.67 3.46
2773 3393 6.208797 TGAGGTACAGTTAATATGATCGGAGG 59.791 42.308 0.00 0.00 0.00 4.30
2775 3395 7.591421 TTGAGGTACAGTTAATATGATCGGA 57.409 36.000 0.00 0.00 0.00 4.55
2777 3397 8.765219 CCTTTTGAGGTACAGTTAATATGATCG 58.235 37.037 0.00 0.00 0.00 3.69
2778 3398 9.614792 ACCTTTTGAGGTACAGTTAATATGATC 57.385 33.333 0.00 0.00 41.04 2.92
2808 3428 9.627395 TGACAAATCTTTTGACTCGTTTAAAAA 57.373 25.926 6.96 0.00 0.00 1.94
2809 3429 9.796120 ATGACAAATCTTTTGACTCGTTTAAAA 57.204 25.926 6.96 0.00 0.00 1.52
2810 3430 9.796120 AATGACAAATCTTTTGACTCGTTTAAA 57.204 25.926 6.96 0.00 0.00 1.52
2811 3431 9.445786 GAATGACAAATCTTTTGACTCGTTTAA 57.554 29.630 6.96 0.00 0.00 1.52
2812 3432 8.836413 AGAATGACAAATCTTTTGACTCGTTTA 58.164 29.630 6.96 0.00 0.00 2.01
2813 3433 7.707104 AGAATGACAAATCTTTTGACTCGTTT 58.293 30.769 6.96 0.00 0.00 3.60
2814 3434 7.012327 TGAGAATGACAAATCTTTTGACTCGTT 59.988 33.333 6.96 3.19 0.00 3.85
2815 3435 6.483307 TGAGAATGACAAATCTTTTGACTCGT 59.517 34.615 6.96 0.00 0.00 4.18
2816 3436 6.891624 TGAGAATGACAAATCTTTTGACTCG 58.108 36.000 6.96 0.00 0.00 4.18
2817 3437 9.125906 CAATGAGAATGACAAATCTTTTGACTC 57.874 33.333 6.96 0.00 0.00 3.36
2818 3438 8.853126 TCAATGAGAATGACAAATCTTTTGACT 58.147 29.630 6.96 0.00 0.00 3.41
2819 3439 9.635520 ATCAATGAGAATGACAAATCTTTTGAC 57.364 29.630 15.42 1.79 0.00 3.18
2824 3444 9.902684 ACTCTATCAATGAGAATGACAAATCTT 57.097 29.630 0.00 0.00 35.66 2.40
2825 3445 9.902684 AACTCTATCAATGAGAATGACAAATCT 57.097 29.630 0.00 0.00 35.66 2.40
2826 3446 9.932699 CAACTCTATCAATGAGAATGACAAATC 57.067 33.333 0.00 0.00 35.66 2.17
2827 3447 8.404000 GCAACTCTATCAATGAGAATGACAAAT 58.596 33.333 0.00 0.00 35.66 2.32
2828 3448 7.148188 GGCAACTCTATCAATGAGAATGACAAA 60.148 37.037 0.00 0.00 33.51 2.83
2829 3449 6.317140 GGCAACTCTATCAATGAGAATGACAA 59.683 38.462 0.00 0.00 33.51 3.18
2830 3450 5.819379 GGCAACTCTATCAATGAGAATGACA 59.181 40.000 0.00 0.00 33.51 3.58
2831 3451 5.238214 GGGCAACTCTATCAATGAGAATGAC 59.762 44.000 0.00 0.00 35.66 3.06
2832 3452 5.371526 GGGCAACTCTATCAATGAGAATGA 58.628 41.667 0.00 0.00 35.66 2.57
2833 3453 4.212847 CGGGCAACTCTATCAATGAGAATG 59.787 45.833 0.00 0.00 35.66 2.67
2834 3454 4.384056 CGGGCAACTCTATCAATGAGAAT 58.616 43.478 0.00 0.00 35.66 2.40
2835 3455 3.432186 CCGGGCAACTCTATCAATGAGAA 60.432 47.826 0.00 0.00 35.66 2.87
2836 3456 2.103094 CCGGGCAACTCTATCAATGAGA 59.897 50.000 0.00 0.00 35.66 3.27
2837 3457 2.158900 ACCGGGCAACTCTATCAATGAG 60.159 50.000 6.32 0.00 37.55 2.90
2838 3458 1.837439 ACCGGGCAACTCTATCAATGA 59.163 47.619 6.32 0.00 0.00 2.57
2839 3459 2.332063 ACCGGGCAACTCTATCAATG 57.668 50.000 6.32 0.00 0.00 2.82
2840 3460 4.497291 TTAACCGGGCAACTCTATCAAT 57.503 40.909 6.32 0.00 0.00 2.57
2841 3461 3.985019 TTAACCGGGCAACTCTATCAA 57.015 42.857 6.32 0.00 0.00 2.57
2842 3462 4.497291 AATTAACCGGGCAACTCTATCA 57.503 40.909 6.32 0.00 0.00 2.15
2843 3463 5.850614 TCTAATTAACCGGGCAACTCTATC 58.149 41.667 6.32 0.00 0.00 2.08
2844 3464 5.601313 TCTCTAATTAACCGGGCAACTCTAT 59.399 40.000 6.32 0.00 0.00 1.98
2845 3465 4.957954 TCTCTAATTAACCGGGCAACTCTA 59.042 41.667 6.32 0.00 0.00 2.43
2846 3466 3.773119 TCTCTAATTAACCGGGCAACTCT 59.227 43.478 6.32 0.00 0.00 3.24
2847 3467 4.133013 TCTCTAATTAACCGGGCAACTC 57.867 45.455 6.32 0.00 0.00 3.01
2848 3468 4.563140 TTCTCTAATTAACCGGGCAACT 57.437 40.909 6.32 0.00 0.00 3.16
2849 3469 5.632244 TTTTCTCTAATTAACCGGGCAAC 57.368 39.130 6.32 0.00 0.00 4.17
2850 3470 5.047872 GGTTTTTCTCTAATTAACCGGGCAA 60.048 40.000 6.32 0.00 0.00 4.52
2851 3471 4.460034 GGTTTTTCTCTAATTAACCGGGCA 59.540 41.667 6.32 0.00 0.00 5.36
2852 3472 4.990257 GGTTTTTCTCTAATTAACCGGGC 58.010 43.478 6.32 0.00 0.00 6.13
2856 3476 9.121517 GCTTTTACGGTTTTTCTCTAATTAACC 57.878 33.333 0.00 0.00 35.91 2.85
2857 3477 9.121517 GGCTTTTACGGTTTTTCTCTAATTAAC 57.878 33.333 0.00 0.00 0.00 2.01
2858 3478 9.070179 AGGCTTTTACGGTTTTTCTCTAATTAA 57.930 29.630 0.00 0.00 0.00 1.40
2859 3479 8.625786 AGGCTTTTACGGTTTTTCTCTAATTA 57.374 30.769 0.00 0.00 0.00 1.40
2860 3480 7.520451 AGGCTTTTACGGTTTTTCTCTAATT 57.480 32.000 0.00 0.00 0.00 1.40
2861 3481 8.098912 TCTAGGCTTTTACGGTTTTTCTCTAAT 58.901 33.333 0.00 0.00 0.00 1.73
2862 3482 7.444299 TCTAGGCTTTTACGGTTTTTCTCTAA 58.556 34.615 0.00 0.00 0.00 2.10
2863 3483 6.996509 TCTAGGCTTTTACGGTTTTTCTCTA 58.003 36.000 0.00 0.00 0.00 2.43
2864 3484 5.861727 TCTAGGCTTTTACGGTTTTTCTCT 58.138 37.500 0.00 0.00 0.00 3.10
2865 3485 6.738832 ATCTAGGCTTTTACGGTTTTTCTC 57.261 37.500 0.00 0.00 0.00 2.87
2866 3486 8.803397 ATAATCTAGGCTTTTACGGTTTTTCT 57.197 30.769 0.00 0.00 0.00 2.52
2869 3489 9.452287 TGTTATAATCTAGGCTTTTACGGTTTT 57.548 29.630 0.00 0.00 0.00 2.43
2870 3490 9.452287 TTGTTATAATCTAGGCTTTTACGGTTT 57.548 29.630 0.00 0.00 0.00 3.27
2871 3491 9.452287 TTTGTTATAATCTAGGCTTTTACGGTT 57.548 29.630 0.00 0.00 0.00 4.44
2872 3492 9.452287 TTTTGTTATAATCTAGGCTTTTACGGT 57.548 29.630 0.00 0.00 0.00 4.83
2877 3497 8.799367 ACGGTTTTTGTTATAATCTAGGCTTTT 58.201 29.630 0.00 0.00 0.00 2.27
2878 3498 8.344446 ACGGTTTTTGTTATAATCTAGGCTTT 57.656 30.769 0.00 0.00 0.00 3.51
2879 3499 7.933215 ACGGTTTTTGTTATAATCTAGGCTT 57.067 32.000 0.00 0.00 0.00 4.35
2880 3500 9.452287 TTTACGGTTTTTGTTATAATCTAGGCT 57.548 29.630 0.00 0.00 0.00 4.58
2885 3505 8.799367 AGGCTTTTACGGTTTTTGTTATAATCT 58.201 29.630 0.00 0.00 0.00 2.40
2886 3506 8.975410 AGGCTTTTACGGTTTTTGTTATAATC 57.025 30.769 0.00 0.00 0.00 1.75
2888 3508 9.282569 TCTAGGCTTTTACGGTTTTTGTTATAA 57.717 29.630 0.00 0.00 0.00 0.98
2889 3509 8.845413 TCTAGGCTTTTACGGTTTTTGTTATA 57.155 30.769 0.00 0.00 0.00 0.98
2890 3510 7.748691 TCTAGGCTTTTACGGTTTTTGTTAT 57.251 32.000 0.00 0.00 0.00 1.89
2891 3511 7.748691 ATCTAGGCTTTTACGGTTTTTGTTA 57.251 32.000 0.00 0.00 0.00 2.41
2892 3512 6.644248 ATCTAGGCTTTTACGGTTTTTGTT 57.356 33.333 0.00 0.00 0.00 2.83
2893 3513 6.644248 AATCTAGGCTTTTACGGTTTTTGT 57.356 33.333 0.00 0.00 0.00 2.83
2903 3523 7.284820 GTGGGGTGTTATAATCTAGGCTTTTA 58.715 38.462 0.00 0.00 0.00 1.52
2908 3530 3.556423 CCGTGGGGTGTTATAATCTAGGC 60.556 52.174 0.00 0.00 0.00 3.93
2939 3563 0.755327 GTTTGTGGCCAGGTTGTCCT 60.755 55.000 5.11 0.00 46.37 3.85
2959 3583 0.872388 GCTTCGGTCGATTGTTTGGT 59.128 50.000 0.00 0.00 0.00 3.67
3165 3790 0.107848 AATGGGTACGCCTACACTGC 60.108 55.000 7.55 0.00 34.45 4.40
3169 3794 1.222387 GCCAATGGGTACGCCTACA 59.778 57.895 7.55 0.00 36.17 2.74
3170 3795 0.532196 GAGCCAATGGGTACGCCTAC 60.532 60.000 3.03 0.00 36.17 3.18
3188 3813 2.602267 ATGTCCACGGTCCGGTGA 60.602 61.111 17.28 8.60 40.38 4.02
3200 3825 1.003580 TGGCTTGTCCTTCTGATGTCC 59.996 52.381 0.00 0.00 35.26 4.02
3242 3867 1.632948 CTCGTGTGGCGACGACTCTA 61.633 60.000 0.65 0.00 45.68 2.43
3244 3869 2.502080 CTCGTGTGGCGACGACTC 60.502 66.667 0.65 0.00 45.68 3.36
3245 3870 3.251318 GACTCGTGTGGCGACGACT 62.251 63.158 0.65 0.00 45.68 4.18
3283 3908 0.248539 GCTGGTATCTGTCCGACGAC 60.249 60.000 0.00 0.00 39.66 4.34
3293 3918 0.681733 ATTGCGATCGGCTGGTATCT 59.318 50.000 18.30 0.00 44.05 1.98
3306 3931 0.310543 GGACTTGCACAACATTGCGA 59.689 50.000 0.00 0.00 46.20 5.10
3350 3975 1.428448 CGCCGTCTTGACAATCTTGA 58.572 50.000 1.59 0.00 0.00 3.02
3357 3982 2.102109 TTTAGGGCGCCGTCTTGACA 62.102 55.000 27.35 3.46 0.00 3.58
3358 3983 1.359459 CTTTAGGGCGCCGTCTTGAC 61.359 60.000 27.35 6.72 0.00 3.18
3404 4029 3.782443 CTTTAGGGTCGGGCGGCT 61.782 66.667 9.56 0.00 0.00 5.52
3418 4043 2.076863 CGAAAGTCAAGATCCCGCTTT 58.923 47.619 0.00 0.00 32.81 3.51
3419 4044 1.726853 CGAAAGTCAAGATCCCGCTT 58.273 50.000 0.00 0.00 0.00 4.68
3432 4057 1.275291 TCAAGATCTTCGGGCGAAAGT 59.725 47.619 4.57 0.00 33.34 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.