Multiple sequence alignment - TraesCS2B01G453900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G453900 chr2B 100.000 3851 0 0 1 3851 647744517 647740667 0.000000e+00 7112.0
1 TraesCS2B01G453900 chr2B 89.050 895 70 12 2268 3137 647707145 647706254 0.000000e+00 1085.0
2 TraesCS2B01G453900 chr2B 87.220 446 45 5 2633 3070 647735235 647734794 7.430000e-137 497.0
3 TraesCS2B01G453900 chr2B 91.292 356 27 2 2633 2985 647703964 647703610 2.080000e-132 483.0
4 TraesCS2B01G453900 chr2B 81.711 596 82 17 2396 2975 647684839 647684255 4.500000e-129 472.0
5 TraesCS2B01G453900 chr2B 87.004 277 26 9 3286 3557 494169958 494169687 1.740000e-78 303.0
6 TraesCS2B01G453900 chr2A 89.963 2162 123 45 1609 3750 685752193 685750106 0.000000e+00 2704.0
7 TraesCS2B01G453900 chr2A 85.304 939 77 23 418 1296 685753489 685752552 0.000000e+00 913.0
8 TraesCS2B01G453900 chr2A 90.756 476 29 4 822 1296 137271682 137271221 4.230000e-174 621.0
9 TraesCS2B01G453900 chr2A 90.316 475 32 1 822 1296 660107862 660108322 9.150000e-171 610.0
10 TraesCS2B01G453900 chr2A 84.006 619 63 21 1295 1904 137271195 137270604 2.600000e-156 562.0
11 TraesCS2B01G453900 chr2A 83.199 619 69 20 1295 1904 660108348 660108940 5.660000e-148 534.0
12 TraesCS2B01G453900 chr2A 86.728 437 47 7 2633 3062 685741400 685740968 3.480000e-130 475.0
13 TraesCS2B01G453900 chr2A 85.092 436 56 8 2634 3068 685696602 685696175 1.640000e-118 436.0
14 TraesCS2B01G453900 chr2A 90.071 282 25 3 99 378 685753774 685753494 2.830000e-96 363.0
15 TraesCS2B01G453900 chr2D 94.304 1387 61 10 1610 2985 543047153 543045774 0.000000e+00 2108.0
16 TraesCS2B01G453900 chr2D 86.296 737 64 16 584 1296 543048260 543047537 0.000000e+00 767.0
17 TraesCS2B01G453900 chr2D 82.625 800 111 16 2293 3074 542946385 542945596 0.000000e+00 682.0
18 TraesCS2B01G453900 chr2D 90.023 441 39 4 1 437 543055157 543054718 2.010000e-157 566.0
19 TraesCS2B01G453900 chr2D 87.534 369 32 8 2717 3074 543043600 543043235 7.700000e-112 414.0
20 TraesCS2B01G453900 chr2D 87.970 266 25 5 3290 3551 331661030 331660768 1.340000e-79 307.0
21 TraesCS2B01G453900 chr6D 85.076 1119 90 31 822 1904 4873571 4872494 0.000000e+00 1070.0
22 TraesCS2B01G453900 chr6D 87.732 269 26 6 3288 3552 445829409 445829144 1.340000e-79 307.0
23 TraesCS2B01G453900 chr4B 82.617 1001 98 22 1015 1980 662856194 662857153 0.000000e+00 815.0
24 TraesCS2B01G453900 chr4B 87.365 277 26 8 3286 3556 175175885 175175612 3.740000e-80 309.0
25 TraesCS2B01G453900 chr4B 80.292 137 21 6 21 154 415115164 415115297 8.800000e-17 99.0
26 TraesCS2B01G453900 chr5A 90.105 475 33 1 822 1296 12620332 12620792 4.260000e-169 604.0
27 TraesCS2B01G453900 chr5A 89.263 475 35 10 822 1296 69012726 69012268 7.170000e-162 580.0
28 TraesCS2B01G453900 chr5A 84.168 619 63 20 1295 1904 69012242 69011650 5.580000e-158 568.0
29 TraesCS2B01G453900 chr5A 83.683 619 66 20 1295 1904 12620818 12621410 5.620000e-153 551.0
30 TraesCS2B01G453900 chr1A 89.895 475 34 1 822 1296 310699968 310700428 1.980000e-167 599.0
31 TraesCS2B01G453900 chr1A 83.199 619 69 20 1295 1904 310700454 310701046 5.660000e-148 534.0
32 TraesCS2B01G453900 chr1B 92.395 263 19 1 1685 1947 519302032 519302293 1.310000e-99 374.0
33 TraesCS2B01G453900 chr1B 87.681 276 28 4 3290 3559 376076469 376076194 2.230000e-82 316.0
34 TraesCS2B01G453900 chr6B 88.235 272 25 4 3285 3551 556282541 556282810 6.210000e-83 318.0
35 TraesCS2B01G453900 chr6B 86.957 276 28 6 3282 3552 300031320 300031048 1.740000e-78 303.0
36 TraesCS2B01G453900 chr6A 87.726 277 27 5 3286 3557 158463608 158463882 2.230000e-82 316.0
37 TraesCS2B01G453900 chr7A 88.015 267 27 3 3290 3552 564832698 564832433 1.040000e-80 311.0
38 TraesCS2B01G453900 chr5D 92.308 39 3 0 550 588 311804711 311804673 5.370000e-04 56.5
39 TraesCS2B01G453900 chr3D 100.000 30 0 0 3593 3622 67721274 67721303 5.370000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G453900 chr2B 647740667 647744517 3850 True 7112.000000 7112 100.0000 1 3851 1 chr2B.!!$R4 3850
1 TraesCS2B01G453900 chr2B 647703610 647707145 3535 True 784.000000 1085 90.1710 2268 3137 2 chr2B.!!$R5 869
2 TraesCS2B01G453900 chr2B 647684255 647684839 584 True 472.000000 472 81.7110 2396 2975 1 chr2B.!!$R2 579
3 TraesCS2B01G453900 chr2A 685750106 685753774 3668 True 1326.666667 2704 88.4460 99 3750 3 chr2A.!!$R4 3651
4 TraesCS2B01G453900 chr2A 137270604 137271682 1078 True 591.500000 621 87.3810 822 1904 2 chr2A.!!$R3 1082
5 TraesCS2B01G453900 chr2A 660107862 660108940 1078 False 572.000000 610 86.7575 822 1904 2 chr2A.!!$F1 1082
6 TraesCS2B01G453900 chr2D 543043235 543048260 5025 True 1096.333333 2108 89.3780 584 3074 3 chr2D.!!$R4 2490
7 TraesCS2B01G453900 chr2D 542945596 542946385 789 True 682.000000 682 82.6250 2293 3074 1 chr2D.!!$R2 781
8 TraesCS2B01G453900 chr6D 4872494 4873571 1077 True 1070.000000 1070 85.0760 822 1904 1 chr6D.!!$R1 1082
9 TraesCS2B01G453900 chr4B 662856194 662857153 959 False 815.000000 815 82.6170 1015 1980 1 chr4B.!!$F2 965
10 TraesCS2B01G453900 chr5A 12620332 12621410 1078 False 577.500000 604 86.8940 822 1904 2 chr5A.!!$F1 1082
11 TraesCS2B01G453900 chr5A 69011650 69012726 1076 True 574.000000 580 86.7155 822 1904 2 chr5A.!!$R1 1082
12 TraesCS2B01G453900 chr1A 310699968 310701046 1078 False 566.500000 599 86.5470 822 1904 2 chr1A.!!$F1 1082

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
491 494 0.037017 CATTGGTTACACCGACCCCA 59.963 55.0 0.00 0.0 42.58 4.96 F
817 887 0.103208 CGAACCCTAGCAAGCGAGAT 59.897 55.0 3.65 0.0 0.00 2.75 F
1431 1536 0.038159 GCGTCACTGCTAGACAACCT 60.038 55.0 0.00 0.0 35.77 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1396 1501 0.318107 ACGCACAGCACAAAAGCATC 60.318 50.000 0.0 0.0 36.85 3.91 R
2183 2331 1.821136 GCCTGAAGCAGTAAAATGGCT 59.179 47.619 0.0 0.0 42.97 4.75 R
3234 3473 1.202855 ACATCCTTGCAGAACAGCACT 60.203 47.619 0.0 0.0 45.61 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.386413 AAGGTCAAGCCAGCTTCG 57.614 55.556 0.90 0.00 40.61 3.79
18 19 1.302832 AAGGTCAAGCCAGCTTCGG 60.303 57.895 0.90 0.00 40.61 4.30
19 20 2.032681 GGTCAAGCCAGCTTCGGT 59.967 61.111 0.90 0.00 37.17 4.69
20 21 1.192146 AGGTCAAGCCAGCTTCGGTA 61.192 55.000 0.90 0.00 40.61 4.02
21 22 0.741221 GGTCAAGCCAGCTTCGGTAG 60.741 60.000 0.90 0.00 37.17 3.18
22 23 0.741221 GTCAAGCCAGCTTCGGTAGG 60.741 60.000 0.90 0.00 33.42 3.18
23 24 1.450312 CAAGCCAGCTTCGGTAGGG 60.450 63.158 0.90 0.00 33.42 3.53
24 25 1.918800 AAGCCAGCTTCGGTAGGGT 60.919 57.895 0.00 0.00 0.00 4.34
25 26 0.616679 AAGCCAGCTTCGGTAGGGTA 60.617 55.000 0.00 0.00 0.00 3.69
26 27 1.043673 AGCCAGCTTCGGTAGGGTAG 61.044 60.000 0.00 0.00 0.00 3.18
27 28 1.442148 CCAGCTTCGGTAGGGTAGC 59.558 63.158 0.00 0.00 0.00 3.58
33 34 4.261781 CGGTAGGGTAGCGGCGAC 62.262 72.222 12.98 4.52 45.08 5.19
34 35 3.142838 GGTAGGGTAGCGGCGACA 61.143 66.667 12.98 0.00 0.00 4.35
35 36 2.713967 GGTAGGGTAGCGGCGACAA 61.714 63.158 12.98 0.00 0.00 3.18
36 37 1.517913 GTAGGGTAGCGGCGACAAC 60.518 63.158 12.98 4.41 0.00 3.32
37 38 3.055080 TAGGGTAGCGGCGACAACG 62.055 63.158 12.98 0.00 42.93 4.10
38 39 4.424566 GGGTAGCGGCGACAACGA 62.425 66.667 12.98 0.00 42.66 3.85
39 40 3.177249 GGTAGCGGCGACAACGAC 61.177 66.667 12.98 0.00 45.02 4.34
54 55 4.831307 GACGCGTCGACGGCTCAT 62.831 66.667 36.13 11.33 38.32 2.90
55 56 4.415332 ACGCGTCGACGGCTCATT 62.415 61.111 36.13 9.37 40.23 2.57
56 57 3.607987 CGCGTCGACGGCTCATTC 61.608 66.667 36.13 18.23 40.23 2.67
57 58 3.255379 GCGTCGACGGCTCATTCC 61.255 66.667 36.13 15.40 40.23 3.01
64 65 2.579201 CGGCTCATTCCGGTGACT 59.421 61.111 0.00 0.00 45.38 3.41
65 66 1.811266 CGGCTCATTCCGGTGACTG 60.811 63.158 0.00 0.00 45.38 3.51
66 67 1.296715 GGCTCATTCCGGTGACTGT 59.703 57.895 0.00 0.00 0.00 3.55
67 68 0.535335 GGCTCATTCCGGTGACTGTA 59.465 55.000 0.00 0.00 0.00 2.74
68 69 1.066430 GGCTCATTCCGGTGACTGTAA 60.066 52.381 0.00 0.00 0.00 2.41
69 70 2.420129 GGCTCATTCCGGTGACTGTAAT 60.420 50.000 0.00 0.00 0.00 1.89
70 71 2.609459 GCTCATTCCGGTGACTGTAATG 59.391 50.000 0.00 3.57 0.00 1.90
71 72 3.198068 CTCATTCCGGTGACTGTAATGG 58.802 50.000 9.42 0.00 0.00 3.16
72 73 2.569853 TCATTCCGGTGACTGTAATGGT 59.430 45.455 9.42 0.00 0.00 3.55
73 74 3.008594 TCATTCCGGTGACTGTAATGGTT 59.991 43.478 9.42 0.00 0.00 3.67
74 75 2.465860 TCCGGTGACTGTAATGGTTG 57.534 50.000 0.00 0.00 0.00 3.77
75 76 0.802494 CCGGTGACTGTAATGGTTGC 59.198 55.000 0.00 0.00 0.00 4.17
76 77 1.610624 CCGGTGACTGTAATGGTTGCT 60.611 52.381 0.00 0.00 0.00 3.91
77 78 1.732259 CGGTGACTGTAATGGTTGCTC 59.268 52.381 0.00 0.00 0.00 4.26
78 79 2.778299 GGTGACTGTAATGGTTGCTCA 58.222 47.619 0.00 0.00 0.00 4.26
79 80 3.146066 GGTGACTGTAATGGTTGCTCAA 58.854 45.455 0.00 0.00 0.00 3.02
80 81 3.758554 GGTGACTGTAATGGTTGCTCAAT 59.241 43.478 0.00 0.00 0.00 2.57
81 82 4.379813 GGTGACTGTAATGGTTGCTCAATG 60.380 45.833 0.00 0.00 0.00 2.82
82 83 4.455533 GTGACTGTAATGGTTGCTCAATGA 59.544 41.667 0.00 0.00 0.00 2.57
83 84 5.124457 GTGACTGTAATGGTTGCTCAATGAT 59.876 40.000 0.00 0.00 0.00 2.45
84 85 5.355071 TGACTGTAATGGTTGCTCAATGATC 59.645 40.000 0.00 0.00 0.00 2.92
85 86 4.641989 ACTGTAATGGTTGCTCAATGATCC 59.358 41.667 0.00 0.00 0.00 3.36
86 87 3.627123 TGTAATGGTTGCTCAATGATCCG 59.373 43.478 0.00 0.00 0.00 4.18
87 88 1.683943 ATGGTTGCTCAATGATCCGG 58.316 50.000 0.00 0.00 0.00 5.14
88 89 0.617935 TGGTTGCTCAATGATCCGGA 59.382 50.000 6.61 6.61 0.00 5.14
89 90 1.303309 GGTTGCTCAATGATCCGGAG 58.697 55.000 11.34 0.00 0.00 4.63
90 91 1.134401 GGTTGCTCAATGATCCGGAGA 60.134 52.381 11.34 0.00 0.00 3.71
91 92 2.486191 GGTTGCTCAATGATCCGGAGAT 60.486 50.000 11.34 0.86 34.57 2.75
106 107 8.833231 GATCCGGAGATCTCAATGTAATTTTA 57.167 34.615 23.85 0.00 44.78 1.52
203 205 6.905609 GCAACTCGCTTTAATGGTTACTATTC 59.094 38.462 0.00 0.00 37.77 1.75
230 232 2.882927 TTCATCGTAGAACATCCCCG 57.117 50.000 0.00 0.00 43.58 5.73
251 253 5.218885 CCGTGTGCATTCAAATGAACTTTA 58.781 37.500 13.64 0.00 43.93 1.85
260 262 7.254387 GCATTCAAATGAACTTTAGTTTGTGCA 60.254 33.333 6.91 0.00 38.56 4.57
294 297 9.750125 AACATCAATTGGTTTACTCTTCTTTTC 57.250 29.630 5.42 0.00 0.00 2.29
301 304 8.801882 TTGGTTTACTCTTCTTTTCTGAGAAA 57.198 30.769 3.02 3.02 35.38 2.52
328 331 7.936496 TTGATTCTCCTTTGTACATATTGCA 57.064 32.000 0.00 0.00 0.00 4.08
331 334 8.970020 TGATTCTCCTTTGTACATATTGCATTT 58.030 29.630 0.00 0.00 0.00 2.32
348 351 5.474825 TGCATTTAATTTTTCGAGGGGTTC 58.525 37.500 0.00 0.00 0.00 3.62
378 381 4.993705 TGGTTCAAATCCAAGTACTCCT 57.006 40.909 0.00 0.00 31.50 3.69
380 383 6.442541 TGGTTCAAATCCAAGTACTCCTTA 57.557 37.500 0.00 0.00 31.50 2.69
381 384 7.027874 TGGTTCAAATCCAAGTACTCCTTAT 57.972 36.000 0.00 0.00 31.50 1.73
382 385 6.884295 TGGTTCAAATCCAAGTACTCCTTATG 59.116 38.462 0.00 0.00 31.50 1.90
383 386 6.884836 GGTTCAAATCCAAGTACTCCTTATGT 59.115 38.462 0.00 0.00 0.00 2.29
384 387 7.393515 GGTTCAAATCCAAGTACTCCTTATGTT 59.606 37.037 0.00 0.00 0.00 2.71
385 388 8.451748 GTTCAAATCCAAGTACTCCTTATGTTC 58.548 37.037 0.00 0.00 0.00 3.18
386 389 7.110155 TCAAATCCAAGTACTCCTTATGTTCC 58.890 38.462 0.00 0.00 0.00 3.62
387 390 6.893020 AATCCAAGTACTCCTTATGTTCCT 57.107 37.500 0.00 0.00 0.00 3.36
388 391 7.989947 AATCCAAGTACTCCTTATGTTCCTA 57.010 36.000 0.00 0.00 0.00 2.94
389 392 7.989947 ATCCAAGTACTCCTTATGTTCCTAA 57.010 36.000 0.00 0.00 0.00 2.69
390 393 7.179076 TCCAAGTACTCCTTATGTTCCTAAC 57.821 40.000 0.00 0.00 0.00 2.34
391 394 6.958192 TCCAAGTACTCCTTATGTTCCTAACT 59.042 38.462 0.00 0.00 0.00 2.24
392 395 7.456902 TCCAAGTACTCCTTATGTTCCTAACTT 59.543 37.037 0.00 0.00 0.00 2.66
393 396 8.755977 CCAAGTACTCCTTATGTTCCTAACTTA 58.244 37.037 0.00 0.00 0.00 2.24
446 449 8.786826 AACAAAACGACTTATATTCAGGATCA 57.213 30.769 0.00 0.00 0.00 2.92
447 450 8.197988 ACAAAACGACTTATATTCAGGATCAC 57.802 34.615 0.00 0.00 0.00 3.06
451 454 5.011125 ACGACTTATATTCAGGATCACAGGG 59.989 44.000 0.00 0.00 0.00 4.45
467 470 7.653713 GGATCACAGGGAGTATATTATATTGCG 59.346 40.741 0.00 0.00 0.00 4.85
488 491 3.607542 CGAAAACATTGGTTACACCGACC 60.608 47.826 0.00 0.00 42.58 4.79
489 492 1.900245 AACATTGGTTACACCGACCC 58.100 50.000 0.00 0.00 42.58 4.46
491 494 0.037017 CATTGGTTACACCGACCCCA 59.963 55.000 0.00 0.00 42.58 4.96
497 500 1.071228 GTTACACCGACCCCAGAAGTT 59.929 52.381 0.00 0.00 0.00 2.66
516 533 3.438087 AGTTGTCGAAATCTGCCTTCATG 59.562 43.478 0.00 0.00 0.00 3.07
538 555 4.008330 GGGCTAACAAAAGTTACTCCCTC 58.992 47.826 11.03 0.00 0.00 4.30
547 564 7.440198 ACAAAAGTTACTCCCTCTGTAAGTAC 58.560 38.462 0.00 0.00 33.83 2.73
557 575 7.498570 ACTCCCTCTGTAAGTACTATCTAAACG 59.501 40.741 0.00 0.00 33.76 3.60
561 579 8.189460 CCTCTGTAAGTACTATCTAAACGCTTT 58.811 37.037 0.00 0.00 33.76 3.51
576 594 9.241317 TCTAAACGCTTTTATATTTCTCTACGG 57.759 33.333 0.00 0.00 0.00 4.02
577 595 9.241317 CTAAACGCTTTTATATTTCTCTACGGA 57.759 33.333 0.00 0.00 0.00 4.69
578 596 7.695869 AACGCTTTTATATTTCTCTACGGAG 57.304 36.000 0.00 0.00 40.73 4.63
579 597 6.214399 ACGCTTTTATATTTCTCTACGGAGG 58.786 40.000 0.00 0.00 39.86 4.30
581 599 6.516194 CGCTTTTATATTTCTCTACGGAGGGA 60.516 42.308 0.00 0.00 39.86 4.20
582 600 6.645827 GCTTTTATATTTCTCTACGGAGGGAC 59.354 42.308 0.00 0.00 39.86 4.46
598 618 4.160065 GGAGGGACTACAGGTCTAGTTTTC 59.840 50.000 0.00 0.00 40.63 2.29
602 622 6.329460 AGGGACTACAGGTCTAGTTTTCTTTT 59.671 38.462 0.00 0.00 43.97 2.27
605 625 6.296803 ACTACAGGTCTAGTTTTCTTTTGGG 58.703 40.000 0.00 0.00 0.00 4.12
613 633 3.989056 AGTTTTCTTTTGGGTTCCTCCA 58.011 40.909 0.00 0.00 38.11 3.86
630 651 1.621317 TCCACATTCGCTCAAGTACCA 59.379 47.619 0.00 0.00 0.00 3.25
653 674 2.038387 AACCCATTCGCTCGCTATTT 57.962 45.000 0.00 0.00 0.00 1.40
658 679 3.745975 CCCATTCGCTCGCTATTTATCAA 59.254 43.478 0.00 0.00 0.00 2.57
680 731 8.401046 TCAAAGTGGAAAAAGAACAAAATACG 57.599 30.769 0.00 0.00 0.00 3.06
681 732 7.489757 TCAAAGTGGAAAAAGAACAAAATACGG 59.510 33.333 0.00 0.00 0.00 4.02
682 733 6.702716 AGTGGAAAAAGAACAAAATACGGA 57.297 33.333 0.00 0.00 0.00 4.69
683 734 6.735130 AGTGGAAAAAGAACAAAATACGGAG 58.265 36.000 0.00 0.00 0.00 4.63
748 799 0.534203 AAGCCCGTATGCCATTACCG 60.534 55.000 0.00 0.00 0.00 4.02
750 801 1.448497 CCCGTATGCCATTACCGGT 59.552 57.895 13.98 13.98 0.00 5.28
768 819 2.439156 GCCCTGCACACTCCATCC 60.439 66.667 0.00 0.00 0.00 3.51
779 849 3.002583 TCCATCCAGCCACTCGCA 61.003 61.111 0.00 0.00 41.38 5.10
815 885 1.078759 CACGAACCCTAGCAAGCGAG 61.079 60.000 0.00 0.00 0.00 5.03
817 887 0.103208 CGAACCCTAGCAAGCGAGAT 59.897 55.000 3.65 0.00 0.00 2.75
1193 1266 1.815196 CTCAGGTCAGATCGCTGCT 59.185 57.895 0.00 0.00 42.01 4.24
1228 1301 0.318120 CCAATGCCCTTTGCTCGTTT 59.682 50.000 0.00 0.00 42.00 3.60
1275 1348 0.517316 CAAACTTGCTACCTGCGGTC 59.483 55.000 3.45 0.00 46.63 4.79
1289 1362 1.479323 TGCGGTCCTACCACTGATTAC 59.521 52.381 0.00 0.00 38.47 1.89
1297 1370 6.158598 GTCCTACCACTGATTACGTTTTGTA 58.841 40.000 0.00 0.00 0.00 2.41
1334 1437 2.766828 ACCTTTCTTCAGTCGATAGGGG 59.233 50.000 0.00 0.00 34.94 4.79
1358 1463 4.270834 AGACTGATCGGAGTTTAGCAGTA 58.729 43.478 9.00 0.00 36.79 2.74
1360 1465 3.130693 ACTGATCGGAGTTTAGCAGTACC 59.869 47.826 9.00 0.00 35.09 3.34
1364 1469 4.644103 TCGGAGTTTAGCAGTACCATAC 57.356 45.455 0.00 0.00 0.00 2.39
1372 1477 5.777850 TTAGCAGTACCATACGCAAGATA 57.222 39.130 0.00 0.00 43.62 1.98
1379 1484 6.478673 CAGTACCATACGCAAGATATGTTCAA 59.521 38.462 0.00 0.00 43.62 2.69
1393 1498 7.830739 AGATATGTTCAAACCTGTCCATTTTC 58.169 34.615 0.00 0.00 0.00 2.29
1394 1499 7.671398 AGATATGTTCAAACCTGTCCATTTTCT 59.329 33.333 0.00 0.00 0.00 2.52
1396 1501 5.659463 TGTTCAAACCTGTCCATTTTCTTG 58.341 37.500 0.00 0.00 0.00 3.02
1414 1519 0.318022 TGATGCTTTTGTGCTGTGCG 60.318 50.000 0.00 0.00 0.00 5.34
1416 1521 0.318107 ATGCTTTTGTGCTGTGCGTC 60.318 50.000 0.00 0.00 0.00 5.19
1430 1535 0.319555 TGCGTCACTGCTAGACAACC 60.320 55.000 0.00 0.00 35.77 3.77
1431 1536 0.038159 GCGTCACTGCTAGACAACCT 60.038 55.000 0.00 0.00 35.77 3.50
1434 1539 3.439293 CGTCACTGCTAGACAACCTATG 58.561 50.000 0.00 0.00 35.77 2.23
1448 1553 6.814954 ACAACCTATGTCCATGTAGAATCT 57.185 37.500 0.00 0.00 37.96 2.40
1451 1556 5.615289 ACCTATGTCCATGTAGAATCTTGC 58.385 41.667 0.00 0.00 0.00 4.01
1467 1574 8.635765 AGAATCTTGCTAGTTGTTTAATTCCA 57.364 30.769 0.00 0.00 0.00 3.53
1468 1575 8.734386 AGAATCTTGCTAGTTGTTTAATTCCAG 58.266 33.333 0.00 0.00 0.00 3.86
1469 1576 8.635765 AATCTTGCTAGTTGTTTAATTCCAGA 57.364 30.769 0.00 0.00 0.00 3.86
1470 1577 8.814038 ATCTTGCTAGTTGTTTAATTCCAGAT 57.186 30.769 0.00 0.00 0.00 2.90
1471 1578 8.635765 TCTTGCTAGTTGTTTAATTCCAGATT 57.364 30.769 0.00 0.00 0.00 2.40
1496 1609 7.843490 TTTGTTATGCTCTAGTCCAACATAC 57.157 36.000 0.00 0.00 0.00 2.39
1514 1629 4.037208 ACATACGTACCACTACCACATAGC 59.963 45.833 0.00 0.00 33.73 2.97
1516 1631 2.426024 ACGTACCACTACCACATAGCTG 59.574 50.000 0.00 0.00 33.73 4.24
1522 1637 4.101119 ACCACTACCACATAGCTGTAATCC 59.899 45.833 0.00 0.00 33.73 3.01
1541 1656 6.939132 AATCCAGCTTTAGTGATCATTGAG 57.061 37.500 0.00 0.00 0.00 3.02
1556 1671 5.947228 TCATTGAGATGTTGGTGTTTCTC 57.053 39.130 0.00 0.00 36.09 2.87
1565 1680 1.444933 TGGTGTTTCTCCCTGATGGT 58.555 50.000 0.00 0.00 34.77 3.55
1573 1688 6.483640 GTGTTTCTCCCTGATGGTATCATTAC 59.516 42.308 0.00 0.00 38.85 1.89
1575 1690 6.425210 TTCTCCCTGATGGTATCATTACTG 57.575 41.667 0.00 0.00 38.85 2.74
1577 1692 5.777223 TCTCCCTGATGGTATCATTACTGAG 59.223 44.000 0.00 0.00 38.85 3.35
1578 1693 5.467738 TCCCTGATGGTATCATTACTGAGT 58.532 41.667 0.00 0.00 38.85 3.41
1595 1710 2.226674 TGAGTGTGCTCTCAGTAACGAG 59.773 50.000 0.00 0.00 42.13 4.18
1597 1712 2.885266 AGTGTGCTCTCAGTAACGAGAA 59.115 45.455 0.00 0.00 41.43 2.87
1598 1713 2.981140 GTGTGCTCTCAGTAACGAGAAC 59.019 50.000 0.00 0.00 41.43 3.01
1599 1714 2.885266 TGTGCTCTCAGTAACGAGAACT 59.115 45.455 0.00 0.00 41.43 3.01
1600 1715 3.318275 TGTGCTCTCAGTAACGAGAACTT 59.682 43.478 0.00 0.00 41.43 2.66
1601 1716 4.202121 TGTGCTCTCAGTAACGAGAACTTT 60.202 41.667 0.00 0.00 41.43 2.66
1602 1717 4.149046 GTGCTCTCAGTAACGAGAACTTTG 59.851 45.833 0.00 0.00 41.43 2.77
1604 1719 4.745620 GCTCTCAGTAACGAGAACTTTGTT 59.254 41.667 0.00 0.00 41.43 2.83
1605 1720 5.919141 GCTCTCAGTAACGAGAACTTTGTTA 59.081 40.000 0.00 0.00 41.43 2.41
1606 1721 6.420008 GCTCTCAGTAACGAGAACTTTGTTAA 59.580 38.462 0.00 0.00 41.43 2.01
1721 1867 0.529119 CGTATCCGTGGGTAAGGCAC 60.529 60.000 0.00 0.00 0.00 5.01
1768 1914 4.128643 CTGCATTGATTTGGGTTTGTGTT 58.871 39.130 0.00 0.00 0.00 3.32
1770 1916 3.498018 GCATTGATTTGGGTTTGTGTTCC 59.502 43.478 0.00 0.00 0.00 3.62
1893 2040 6.022315 TGGGTTGATCAATTATTTGGTCCTT 58.978 36.000 12.12 0.00 41.48 3.36
1956 2103 5.582269 TGATTACTGATGCTCACTGCTAAAC 59.418 40.000 0.00 0.00 43.37 2.01
1959 2106 3.999663 ACTGATGCTCACTGCTAAACTTC 59.000 43.478 0.00 0.00 43.37 3.01
1961 2108 4.582869 TGATGCTCACTGCTAAACTTCAT 58.417 39.130 0.00 0.00 43.37 2.57
1964 2111 5.112220 TGCTCACTGCTAAACTTCATTTG 57.888 39.130 0.00 0.00 43.37 2.32
2052 2199 2.436542 AGCCATATGTTGCTTACGGGTA 59.563 45.455 1.24 0.00 32.94 3.69
2058 2205 6.653320 CCATATGTTGCTTACGGGTATGTTAT 59.347 38.462 1.24 0.00 0.00 1.89
2103 2251 4.771590 TGAATGCATTCCTGTTGTCTTC 57.228 40.909 31.35 8.89 35.97 2.87
2104 2252 3.507233 TGAATGCATTCCTGTTGTCTTCC 59.493 43.478 31.35 7.81 35.97 3.46
2105 2253 2.957402 TGCATTCCTGTTGTCTTCCT 57.043 45.000 0.00 0.00 0.00 3.36
2106 2254 3.228188 TGCATTCCTGTTGTCTTCCTT 57.772 42.857 0.00 0.00 0.00 3.36
2109 2257 3.057946 GCATTCCTGTTGTCTTCCTTGTC 60.058 47.826 0.00 0.00 0.00 3.18
2162 2310 5.476091 TTTGGTTGGATGAATTTACCACC 57.524 39.130 0.00 0.00 38.53 4.61
2183 2331 6.317140 CCACCGTGTTATCTACTGTCTACTAA 59.683 42.308 0.00 0.00 0.00 2.24
2204 2352 1.134995 GCCATTTTACTGCTTCAGGCC 60.135 52.381 0.00 0.00 40.92 5.19
2206 2354 2.562298 CCATTTTACTGCTTCAGGCCAA 59.438 45.455 5.01 0.00 40.92 4.52
2224 2372 2.545742 CCAACTTGTTTAGCCACTTGCC 60.546 50.000 0.00 0.00 42.71 4.52
2239 2387 4.329801 CCACTTGCCAAGTCTTTTGAAAAC 59.670 41.667 7.22 0.00 40.46 2.43
2256 2405 6.131544 TGAAAACTTTAGTCTGAAACCTGC 57.868 37.500 0.00 0.00 0.00 4.85
2306 2455 7.703058 AGCAATTATGTTAGTTTAGCTGGTT 57.297 32.000 0.00 0.00 0.00 3.67
2309 2458 8.860128 GCAATTATGTTAGTTTAGCTGGTTTTC 58.140 33.333 0.00 0.00 0.00 2.29
2361 2511 7.936496 TCATTTTTCTCATATGTAGTGCCAA 57.064 32.000 1.90 0.00 0.00 4.52
2578 2729 5.768164 GGAGGTTTGTTTCTTCAACCATAGA 59.232 40.000 3.27 0.00 33.97 1.98
2586 2740 2.002586 CTTCAACCATAGACCTGTGCG 58.997 52.381 0.00 0.00 0.00 5.34
2715 2880 1.763770 CCCACACTTCAAGGAGGCT 59.236 57.895 0.00 0.00 0.00 4.58
2799 2964 0.323178 ACTACGTCGAGGGTGGTGAT 60.323 55.000 10.27 0.00 0.00 3.06
2811 2976 4.120331 GGTGATGCTGGCAACCGC 62.120 66.667 0.00 1.82 37.44 5.68
2986 3158 7.557719 GATGAAATCCCACATTTCCTCTAGAAA 59.442 37.037 0.00 0.00 42.42 2.52
3121 3313 3.328382 AGGCACGCAAATCTTGTACTA 57.672 42.857 0.00 0.00 0.00 1.82
3178 3417 3.879427 TCTTGTTTTAATCGCACAACGG 58.121 40.909 0.00 0.00 43.89 4.44
3182 3421 4.421948 TGTTTTAATCGCACAACGGTTTT 58.578 34.783 0.00 0.00 44.52 2.43
3183 3422 4.499758 TGTTTTAATCGCACAACGGTTTTC 59.500 37.500 0.00 0.00 44.52 2.29
3184 3423 3.965292 TTAATCGCACAACGGTTTTCA 57.035 38.095 0.00 0.00 44.52 2.69
3187 3426 2.853731 TCGCACAACGGTTTTCATTT 57.146 40.000 0.00 0.00 43.89 2.32
3194 3433 6.508721 CGCACAACGGTTTTCATTTTTGTATT 60.509 34.615 0.00 0.00 38.44 1.89
3283 3522 5.064707 AGTTATACATGTTCAATCCGTGCAC 59.935 40.000 6.82 6.82 0.00 4.57
3292 3531 6.375377 TGTTCAATCCGTGCACTTTTTATAC 58.625 36.000 16.19 6.40 0.00 1.47
3293 3532 6.205853 TGTTCAATCCGTGCACTTTTTATACT 59.794 34.615 16.19 0.00 0.00 2.12
3294 3533 6.417191 TCAATCCGTGCACTTTTTATACTC 57.583 37.500 16.19 0.00 0.00 2.59
3295 3534 6.170506 TCAATCCGTGCACTTTTTATACTCT 58.829 36.000 16.19 0.00 0.00 3.24
3296 3535 6.312918 TCAATCCGTGCACTTTTTATACTCTC 59.687 38.462 16.19 0.00 0.00 3.20
3298 3537 5.408356 TCCGTGCACTTTTTATACTCTCTC 58.592 41.667 16.19 0.00 0.00 3.20
3299 3538 4.567159 CCGTGCACTTTTTATACTCTCTCC 59.433 45.833 16.19 0.00 0.00 3.71
3301 3540 5.869888 CGTGCACTTTTTATACTCTCTCCTT 59.130 40.000 16.19 0.00 0.00 3.36
3302 3541 6.369065 CGTGCACTTTTTATACTCTCTCCTTT 59.631 38.462 16.19 0.00 0.00 3.11
3303 3542 7.412020 CGTGCACTTTTTATACTCTCTCCTTTC 60.412 40.741 16.19 0.00 0.00 2.62
3304 3543 6.879458 TGCACTTTTTATACTCTCTCCTTTCC 59.121 38.462 0.00 0.00 0.00 3.13
3305 3544 7.106890 GCACTTTTTATACTCTCTCCTTTCCT 58.893 38.462 0.00 0.00 0.00 3.36
3362 3602 8.903570 TCCAAAATATAAAGTGTATTGCGTTG 57.096 30.769 0.00 0.00 0.00 4.10
3363 3603 7.486551 TCCAAAATATAAAGTGTATTGCGTTGC 59.513 33.333 0.00 0.00 0.00 4.17
3364 3604 7.274468 CCAAAATATAAAGTGTATTGCGTTGCA 59.726 33.333 0.00 0.00 36.47 4.08
3421 3661 9.617975 GATTACATTTTCTTATATCAGGCAAGC 57.382 33.333 0.00 0.00 0.00 4.01
3422 3662 8.752005 TTACATTTTCTTATATCAGGCAAGCT 57.248 30.769 0.00 0.00 0.00 3.74
3423 3663 7.269477 ACATTTTCTTATATCAGGCAAGCTC 57.731 36.000 0.00 0.00 0.00 4.09
3424 3664 6.264067 ACATTTTCTTATATCAGGCAAGCTCC 59.736 38.462 0.00 0.00 0.00 4.70
3425 3665 5.636903 TTTCTTATATCAGGCAAGCTCCT 57.363 39.130 0.00 0.00 36.78 3.69
3426 3666 4.881019 TCTTATATCAGGCAAGCTCCTC 57.119 45.455 0.00 0.00 33.25 3.71
3427 3667 4.487804 TCTTATATCAGGCAAGCTCCTCT 58.512 43.478 0.00 0.00 33.25 3.69
3428 3668 5.645201 TCTTATATCAGGCAAGCTCCTCTA 58.355 41.667 0.00 0.00 33.25 2.43
3429 3669 6.259893 TCTTATATCAGGCAAGCTCCTCTAT 58.740 40.000 0.00 0.00 33.25 1.98
3430 3670 6.728164 TCTTATATCAGGCAAGCTCCTCTATT 59.272 38.462 0.00 0.00 33.25 1.73
3431 3671 5.839517 ATATCAGGCAAGCTCCTCTATTT 57.160 39.130 0.00 0.00 33.25 1.40
3432 3672 6.942163 ATATCAGGCAAGCTCCTCTATTTA 57.058 37.500 0.00 0.00 33.25 1.40
3433 3673 4.408182 TCAGGCAAGCTCCTCTATTTAC 57.592 45.455 0.00 0.00 33.25 2.01
3434 3674 4.033709 TCAGGCAAGCTCCTCTATTTACT 58.966 43.478 0.00 0.00 33.25 2.24
3435 3675 4.100189 TCAGGCAAGCTCCTCTATTTACTC 59.900 45.833 0.00 0.00 33.25 2.59
3460 3700 7.981789 TCATGTCAATTAGTCAGGTGTAATCTC 59.018 37.037 0.00 0.00 0.00 2.75
3462 3702 6.071560 TGTCAATTAGTCAGGTGTAATCTCGT 60.072 38.462 0.00 0.00 0.00 4.18
3463 3703 6.812160 GTCAATTAGTCAGGTGTAATCTCGTT 59.188 38.462 0.00 0.00 0.00 3.85
3469 3709 5.465724 AGTCAGGTGTAATCTCGTTCAAAAC 59.534 40.000 0.00 0.00 0.00 2.43
3472 3712 6.018262 TCAGGTGTAATCTCGTTCAAAACTTG 60.018 38.462 0.00 0.00 0.00 3.16
3478 3718 8.237949 TGTAATCTCGTTCAAAACTTGTGAAAA 58.762 29.630 0.00 0.00 36.77 2.29
3484 3724 8.527567 TCGTTCAAAACTTGTGAAAATTTTCT 57.472 26.923 26.73 7.94 36.77 2.52
3494 3734 6.601741 TGTGAAAATTTTCTTTCATGTGCC 57.398 33.333 26.73 2.36 44.76 5.01
3497 3737 7.336427 TGTGAAAATTTTCTTTCATGTGCCTTT 59.664 29.630 26.73 0.00 44.76 3.11
3498 3738 8.183536 GTGAAAATTTTCTTTCATGTGCCTTTT 58.816 29.630 26.73 0.00 44.76 2.27
3528 3768 8.851541 TTTCCGTGTTAAAAACTATACATCCT 57.148 30.769 0.00 0.00 0.00 3.24
3529 3769 9.941325 TTTCCGTGTTAAAAACTATACATCCTA 57.059 29.630 0.00 0.00 0.00 2.94
3531 3771 9.537192 TCCGTGTTAAAAACTATACATCCTATG 57.463 33.333 0.00 0.00 0.00 2.23
3532 3772 9.321562 CCGTGTTAAAAACTATACATCCTATGT 57.678 33.333 0.00 0.00 46.92 2.29
3548 3788 6.500589 TCCTATGTTTAAGAATGGAGGGAG 57.499 41.667 0.00 0.00 0.00 4.30
3564 3804 4.586001 GGAGGGAGTATGTATTAACGGTCA 59.414 45.833 0.00 0.00 0.00 4.02
3576 3816 5.950758 ATTAACGGTCAAAGTTGTGCATA 57.049 34.783 0.00 0.00 33.42 3.14
3583 3823 4.515191 GGTCAAAGTTGTGCATAAGAGACA 59.485 41.667 14.53 0.00 0.00 3.41
3630 3882 4.906618 GGGAGTATCACTTTCAACTTGGA 58.093 43.478 0.00 0.00 33.91 3.53
3631 3883 5.501156 GGGAGTATCACTTTCAACTTGGAT 58.499 41.667 0.00 0.00 33.91 3.41
3635 3887 6.542821 AGTATCACTTTCAACTTGGATCCAA 58.457 36.000 25.53 25.53 0.00 3.53
3657 3909 3.270877 TCTTTGGCGCTAATTTCCTCTC 58.729 45.455 7.14 0.00 0.00 3.20
3711 3974 7.033791 TGCTAGTCAGTTGTACTAATGTTAGC 58.966 38.462 22.53 22.53 34.09 3.09
3712 3975 6.476053 GCTAGTCAGTTGTACTAATGTTAGCC 59.524 42.308 20.68 11.20 34.09 3.93
3730 3993 2.817258 AGCCTGTATACAAGCGCAAAAA 59.183 40.909 18.42 0.00 38.30 1.94
3734 3997 2.490115 TGTATACAAGCGCAAAAAGGGG 59.510 45.455 11.47 0.00 0.00 4.79
3754 4017 2.814336 GGTTCCTTGCTGTTCTTGTAGG 59.186 50.000 0.00 0.00 0.00 3.18
3756 4019 2.054799 TCCTTGCTGTTCTTGTAGGGT 58.945 47.619 0.00 0.00 0.00 4.34
3757 4020 2.154462 CCTTGCTGTTCTTGTAGGGTG 58.846 52.381 0.00 0.00 0.00 4.61
3758 4021 2.487265 CCTTGCTGTTCTTGTAGGGTGT 60.487 50.000 0.00 0.00 0.00 4.16
3759 4022 2.254546 TGCTGTTCTTGTAGGGTGTG 57.745 50.000 0.00 0.00 0.00 3.82
3762 4025 2.949644 GCTGTTCTTGTAGGGTGTGTTT 59.050 45.455 0.00 0.00 0.00 2.83
3765 4028 5.362105 TGTTCTTGTAGGGTGTGTTTAGT 57.638 39.130 0.00 0.00 0.00 2.24
3766 4029 5.747342 TGTTCTTGTAGGGTGTGTTTAGTT 58.253 37.500 0.00 0.00 0.00 2.24
3767 4030 6.181908 TGTTCTTGTAGGGTGTGTTTAGTTT 58.818 36.000 0.00 0.00 0.00 2.66
3768 4031 6.316890 TGTTCTTGTAGGGTGTGTTTAGTTTC 59.683 38.462 0.00 0.00 0.00 2.78
3769 4032 6.243216 TCTTGTAGGGTGTGTTTAGTTTCT 57.757 37.500 0.00 0.00 0.00 2.52
3770 4033 7.364149 TCTTGTAGGGTGTGTTTAGTTTCTA 57.636 36.000 0.00 0.00 0.00 2.10
3771 4034 7.970102 TCTTGTAGGGTGTGTTTAGTTTCTAT 58.030 34.615 0.00 0.00 0.00 1.98
3772 4035 8.092687 TCTTGTAGGGTGTGTTTAGTTTCTATC 58.907 37.037 0.00 0.00 0.00 2.08
3773 4036 7.305813 TGTAGGGTGTGTTTAGTTTCTATCA 57.694 36.000 0.00 0.00 0.00 2.15
3775 4038 5.557866 AGGGTGTGTTTAGTTTCTATCACC 58.442 41.667 0.00 0.00 41.99 4.02
3778 4041 5.411669 GGTGTGTTTAGTTTCTATCACCAGG 59.588 44.000 0.00 0.00 42.20 4.45
3779 4042 5.995897 GTGTGTTTAGTTTCTATCACCAGGT 59.004 40.000 0.00 0.00 0.00 4.00
3782 4045 5.308497 TGTTTAGTTTCTATCACCAGGTGGA 59.692 40.000 20.14 6.34 38.94 4.02
3784 4047 6.636454 TTAGTTTCTATCACCAGGTGGAAT 57.364 37.500 20.14 9.29 38.94 3.01
3785 4048 7.743116 TTAGTTTCTATCACCAGGTGGAATA 57.257 36.000 20.14 9.95 38.94 1.75
3786 4049 6.831664 AGTTTCTATCACCAGGTGGAATAT 57.168 37.500 20.14 8.18 38.94 1.28
3787 4050 7.931015 AGTTTCTATCACCAGGTGGAATATA 57.069 36.000 20.14 8.91 38.94 0.86
3788 4051 8.331931 AGTTTCTATCACCAGGTGGAATATAA 57.668 34.615 20.14 7.27 38.94 0.98
3789 4052 8.949421 AGTTTCTATCACCAGGTGGAATATAAT 58.051 33.333 20.14 6.35 38.94 1.28
3790 4053 9.003658 GTTTCTATCACCAGGTGGAATATAATG 57.996 37.037 20.14 0.21 38.94 1.90
3791 4054 7.257790 TCTATCACCAGGTGGAATATAATGG 57.742 40.000 20.14 6.02 38.94 3.16
3792 4055 4.722526 TCACCAGGTGGAATATAATGGG 57.277 45.455 20.14 0.00 38.94 4.00
3793 4056 4.051478 TCACCAGGTGGAATATAATGGGT 58.949 43.478 20.14 0.00 38.94 4.51
3794 4057 4.104102 TCACCAGGTGGAATATAATGGGTC 59.896 45.833 20.14 0.00 38.94 4.46
3795 4058 3.397955 ACCAGGTGGAATATAATGGGTCC 59.602 47.826 2.10 0.00 38.94 4.46
3796 4059 3.559171 CCAGGTGGAATATAATGGGTCCG 60.559 52.174 0.00 0.00 37.39 4.79
3797 4060 3.326588 CAGGTGGAATATAATGGGTCCGA 59.673 47.826 0.00 0.00 32.45 4.55
3799 4062 3.558533 GGTGGAATATAATGGGTCCGACC 60.559 52.174 9.30 9.30 37.60 4.79
3809 4072 4.530857 GTCCGACCCGCATCCAGG 62.531 72.222 0.00 0.00 0.00 4.45
3810 4073 4.770362 TCCGACCCGCATCCAGGA 62.770 66.667 0.00 0.00 0.00 3.86
3811 4074 4.530857 CCGACCCGCATCCAGGAC 62.531 72.222 0.00 0.00 0.00 3.85
3813 4076 2.501610 GACCCGCATCCAGGACTC 59.498 66.667 0.00 0.00 0.00 3.36
3814 4077 3.432051 GACCCGCATCCAGGACTCG 62.432 68.421 0.00 0.00 0.00 4.18
3817 4080 1.519455 CCGCATCCAGGACTCGTTC 60.519 63.158 10.35 0.00 0.00 3.95
3818 4081 1.874019 CGCATCCAGGACTCGTTCG 60.874 63.158 0.00 0.00 0.00 3.95
3819 4082 1.511305 GCATCCAGGACTCGTTCGA 59.489 57.895 0.00 0.00 0.00 3.71
3820 4083 0.526524 GCATCCAGGACTCGTTCGAG 60.527 60.000 18.66 18.66 38.17 4.04
3822 4085 0.811915 ATCCAGGACTCGTTCGAGTG 59.188 55.000 28.20 15.81 44.47 3.51
3825 4088 1.269621 CCAGGACTCGTTCGAGTGTTT 60.270 52.381 28.20 12.96 44.47 2.83
3828 4091 1.537562 GGACTCGTTCGAGTGTTTGGT 60.538 52.381 28.20 6.65 44.47 3.67
3829 4092 2.199236 GACTCGTTCGAGTGTTTGGTT 58.801 47.619 28.20 5.17 44.47 3.67
3830 4093 1.931172 ACTCGTTCGAGTGTTTGGTTG 59.069 47.619 23.80 0.00 43.05 3.77
3831 4094 1.260561 CTCGTTCGAGTGTTTGGTTGG 59.739 52.381 13.18 0.00 0.00 3.77
3833 4096 1.385528 GTTCGAGTGTTTGGTTGGGT 58.614 50.000 0.00 0.00 0.00 4.51
3834 4097 1.332686 GTTCGAGTGTTTGGTTGGGTC 59.667 52.381 0.00 0.00 0.00 4.46
3836 4099 0.531090 CGAGTGTTTGGTTGGGTCGA 60.531 55.000 0.00 0.00 0.00 4.20
3837 4100 1.226746 GAGTGTTTGGTTGGGTCGAG 58.773 55.000 0.00 0.00 0.00 4.04
3838 4101 0.179029 AGTGTTTGGTTGGGTCGAGG 60.179 55.000 0.00 0.00 0.00 4.63
3840 4103 1.602605 GTTTGGTTGGGTCGAGGGG 60.603 63.158 0.00 0.00 0.00 4.79
3842 4105 3.795977 TTGGTTGGGTCGAGGGGGA 62.796 63.158 0.00 0.00 0.00 4.81
3843 4106 3.400054 GGTTGGGTCGAGGGGGAG 61.400 72.222 0.00 0.00 0.00 4.30
3844 4107 2.284405 GTTGGGTCGAGGGGGAGA 60.284 66.667 0.00 0.00 0.00 3.71
3845 4108 1.916777 GTTGGGTCGAGGGGGAGAA 60.917 63.158 0.00 0.00 0.00 2.87
3846 4109 1.916777 TTGGGTCGAGGGGGAGAAC 60.917 63.158 0.00 0.00 0.00 3.01
3848 4111 2.284405 GGTCGAGGGGGAGAACCA 60.284 66.667 0.00 0.00 42.91 3.67
3850 4113 1.295746 GTCGAGGGGGAGAACCAAC 59.704 63.158 0.00 0.00 42.91 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.302832 CCGAAGCTGGCTTGACCTT 60.303 57.895 12.79 0.00 40.22 3.50
1 2 1.192146 TACCGAAGCTGGCTTGACCT 61.192 55.000 12.79 0.00 40.22 3.85
2 3 0.741221 CTACCGAAGCTGGCTTGACC 60.741 60.000 12.79 0.00 36.26 4.02
3 4 0.741221 CCTACCGAAGCTGGCTTGAC 60.741 60.000 12.79 0.00 36.26 3.18
5 6 1.450312 CCCTACCGAAGCTGGCTTG 60.450 63.158 12.79 2.09 36.26 4.01
6 7 0.616679 TACCCTACCGAAGCTGGCTT 60.617 55.000 7.60 7.60 39.23 4.35
7 8 1.001248 TACCCTACCGAAGCTGGCT 59.999 57.895 0.00 0.00 0.00 4.75
8 9 1.442148 CTACCCTACCGAAGCTGGC 59.558 63.158 0.00 0.00 0.00 4.85
9 10 1.442148 GCTACCCTACCGAAGCTGG 59.558 63.158 0.00 0.00 32.18 4.85
10 11 1.065928 CGCTACCCTACCGAAGCTG 59.934 63.158 0.00 0.00 32.73 4.24
11 12 2.125961 CCGCTACCCTACCGAAGCT 61.126 63.158 0.00 0.00 32.73 3.74
12 13 2.416260 CCGCTACCCTACCGAAGC 59.584 66.667 0.00 0.00 0.00 3.86
13 14 2.416260 GCCGCTACCCTACCGAAG 59.584 66.667 0.00 0.00 0.00 3.79
14 15 3.520862 CGCCGCTACCCTACCGAA 61.521 66.667 0.00 0.00 0.00 4.30
15 16 4.488136 TCGCCGCTACCCTACCGA 62.488 66.667 0.00 0.00 0.00 4.69
16 17 4.261781 GTCGCCGCTACCCTACCG 62.262 72.222 0.00 0.00 0.00 4.02
17 18 2.713967 TTGTCGCCGCTACCCTACC 61.714 63.158 0.00 0.00 0.00 3.18
18 19 1.517913 GTTGTCGCCGCTACCCTAC 60.518 63.158 0.00 0.00 0.00 3.18
19 20 2.887360 GTTGTCGCCGCTACCCTA 59.113 61.111 0.00 0.00 0.00 3.53
20 21 4.430765 CGTTGTCGCCGCTACCCT 62.431 66.667 0.00 0.00 0.00 4.34
21 22 4.424566 TCGTTGTCGCCGCTACCC 62.425 66.667 0.00 0.00 36.96 3.69
22 23 3.177249 GTCGTTGTCGCCGCTACC 61.177 66.667 0.00 0.00 36.96 3.18
23 24 3.530104 CGTCGTTGTCGCCGCTAC 61.530 66.667 0.00 0.00 36.96 3.58
37 38 4.831307 ATGAGCCGTCGACGCGTC 62.831 66.667 31.73 28.96 38.18 5.19
38 39 4.415332 AATGAGCCGTCGACGCGT 62.415 61.111 31.73 20.42 38.18 6.01
39 40 3.607987 GAATGAGCCGTCGACGCG 61.608 66.667 31.73 24.17 38.18 6.01
40 41 3.255379 GGAATGAGCCGTCGACGC 61.255 66.667 31.73 25.08 38.18 5.19
41 42 2.949678 CGGAATGAGCCGTCGACG 60.950 66.667 30.33 30.33 46.07 5.12
48 49 0.535335 TACAGTCACCGGAATGAGCC 59.465 55.000 9.46 0.00 41.49 4.70
49 50 2.380084 TTACAGTCACCGGAATGAGC 57.620 50.000 9.46 0.00 41.49 4.26
50 51 3.198068 CCATTACAGTCACCGGAATGAG 58.802 50.000 9.46 0.00 41.49 2.90
51 52 2.569853 ACCATTACAGTCACCGGAATGA 59.430 45.455 9.46 0.00 41.49 2.57
52 53 2.985896 ACCATTACAGTCACCGGAATG 58.014 47.619 9.46 5.55 44.38 2.67
53 54 3.343617 CAACCATTACAGTCACCGGAAT 58.656 45.455 9.46 0.00 0.00 3.01
54 55 2.773487 CAACCATTACAGTCACCGGAA 58.227 47.619 9.46 0.00 0.00 4.30
55 56 1.609580 GCAACCATTACAGTCACCGGA 60.610 52.381 9.46 0.00 0.00 5.14
56 57 0.802494 GCAACCATTACAGTCACCGG 59.198 55.000 0.00 0.00 0.00 5.28
57 58 1.732259 GAGCAACCATTACAGTCACCG 59.268 52.381 0.00 0.00 0.00 4.94
58 59 2.778299 TGAGCAACCATTACAGTCACC 58.222 47.619 0.00 0.00 0.00 4.02
59 60 4.455533 TCATTGAGCAACCATTACAGTCAC 59.544 41.667 0.00 0.00 0.00 3.67
60 61 4.650734 TCATTGAGCAACCATTACAGTCA 58.349 39.130 0.00 0.00 0.00 3.41
61 62 5.220931 GGATCATTGAGCAACCATTACAGTC 60.221 44.000 4.07 0.00 0.00 3.51
62 63 4.641989 GGATCATTGAGCAACCATTACAGT 59.358 41.667 4.07 0.00 0.00 3.55
63 64 4.260907 CGGATCATTGAGCAACCATTACAG 60.261 45.833 4.07 0.00 0.00 2.74
64 65 3.627123 CGGATCATTGAGCAACCATTACA 59.373 43.478 4.07 0.00 0.00 2.41
65 66 3.003689 CCGGATCATTGAGCAACCATTAC 59.996 47.826 0.00 0.00 0.00 1.89
66 67 3.118075 TCCGGATCATTGAGCAACCATTA 60.118 43.478 0.00 0.00 0.00 1.90
67 68 2.026641 CCGGATCATTGAGCAACCATT 58.973 47.619 0.00 0.00 0.00 3.16
68 69 1.212688 TCCGGATCATTGAGCAACCAT 59.787 47.619 0.00 0.00 0.00 3.55
69 70 0.617935 TCCGGATCATTGAGCAACCA 59.382 50.000 0.00 0.00 0.00 3.67
70 71 1.134401 TCTCCGGATCATTGAGCAACC 60.134 52.381 3.57 0.00 0.00 3.77
71 72 2.315925 TCTCCGGATCATTGAGCAAC 57.684 50.000 3.57 0.00 0.00 4.17
72 73 3.117491 GATCTCCGGATCATTGAGCAA 57.883 47.619 3.57 0.00 45.54 3.91
73 74 2.827800 GATCTCCGGATCATTGAGCA 57.172 50.000 3.57 0.00 45.54 4.26
81 82 7.736447 AAAATTACATTGAGATCTCCGGATC 57.264 36.000 20.03 0.00 46.33 3.36
82 83 9.799106 ATTAAAATTACATTGAGATCTCCGGAT 57.201 29.630 20.03 8.64 34.45 4.18
83 84 9.627123 AATTAAAATTACATTGAGATCTCCGGA 57.373 29.630 20.03 2.93 0.00 5.14
152 154 9.846248 CTTTGAAAGGTTTCCATAATTCACTAG 57.154 33.333 0.00 0.00 36.36 2.57
156 158 7.060383 TGCTTTGAAAGGTTTCCATAATTCA 57.940 32.000 7.09 0.00 36.36 2.57
203 205 7.254795 GGGGATGTTCTACGATGAATTTTGTAG 60.255 40.741 0.00 0.00 36.49 2.74
212 214 1.407618 CACGGGGATGTTCTACGATGA 59.592 52.381 0.00 0.00 0.00 2.92
230 232 7.698836 AACTAAAGTTCATTTGAATGCACAC 57.301 32.000 8.73 2.28 35.43 3.82
269 271 9.136323 AGAAAAGAAGAGTAAACCAATTGATGT 57.864 29.630 7.12 0.00 0.00 3.06
301 304 9.807649 GCAATATGTACAAAGGAGAATCAAATT 57.192 29.630 0.00 0.00 36.25 1.82
328 331 6.867519 ATGGAACCCCTCGAAAAATTAAAT 57.132 33.333 0.00 0.00 0.00 1.40
331 334 5.326069 TGAATGGAACCCCTCGAAAAATTA 58.674 37.500 0.00 0.00 0.00 1.40
333 336 3.773560 TGAATGGAACCCCTCGAAAAAT 58.226 40.909 0.00 0.00 0.00 1.82
422 425 7.822334 TGTGATCCTGAATATAAGTCGTTTTGT 59.178 33.333 0.00 0.00 0.00 2.83
429 432 6.268847 ACTCCCTGTGATCCTGAATATAAGTC 59.731 42.308 0.00 0.00 0.00 3.01
446 449 9.216117 GTTTTCGCAATATAATATACTCCCTGT 57.784 33.333 0.00 0.00 0.00 4.00
447 450 9.214957 TGTTTTCGCAATATAATATACTCCCTG 57.785 33.333 0.00 0.00 0.00 4.45
458 461 8.676454 GTGTAACCAATGTTTTCGCAATATAA 57.324 30.769 0.00 0.00 35.87 0.98
488 491 2.160417 GCAGATTTCGACAACTTCTGGG 59.840 50.000 3.56 0.00 35.47 4.45
489 492 2.160417 GGCAGATTTCGACAACTTCTGG 59.840 50.000 3.56 0.00 35.47 3.86
491 494 3.409026 AGGCAGATTTCGACAACTTCT 57.591 42.857 0.00 0.00 0.00 2.85
497 500 2.358957 CCATGAAGGCAGATTTCGACA 58.641 47.619 0.00 0.00 0.00 4.35
557 575 6.645827 GTCCCTCCGTAGAGAAATATAAAAGC 59.354 42.308 0.00 0.00 43.39 3.51
561 579 7.520798 TGTAGTCCCTCCGTAGAGAAATATAA 58.479 38.462 0.00 0.00 43.39 0.98
567 585 2.092538 CCTGTAGTCCCTCCGTAGAGAA 60.093 54.545 0.00 0.00 43.39 2.87
569 587 1.212441 ACCTGTAGTCCCTCCGTAGAG 59.788 57.143 0.00 0.00 40.09 2.43
571 589 1.677942 GACCTGTAGTCCCTCCGTAG 58.322 60.000 0.00 0.00 39.84 3.51
573 591 4.759893 GACCTGTAGTCCCTCCGT 57.240 61.111 0.00 0.00 39.84 4.69
581 599 6.126565 ACCCAAAAGAAAACTAGACCTGTAGT 60.127 38.462 0.00 0.00 34.56 2.73
582 600 6.296803 ACCCAAAAGAAAACTAGACCTGTAG 58.703 40.000 0.00 0.00 0.00 2.74
598 618 2.228822 CGAATGTGGAGGAACCCAAAAG 59.771 50.000 0.00 0.00 38.06 2.27
602 622 1.002624 GCGAATGTGGAGGAACCCA 60.003 57.895 0.00 0.00 38.00 4.51
605 625 1.734465 CTTGAGCGAATGTGGAGGAAC 59.266 52.381 0.00 0.00 0.00 3.62
613 633 3.678056 TTCTGGTACTTGAGCGAATGT 57.322 42.857 0.00 0.00 0.00 2.71
630 651 0.321653 AGCGAGCGAATGGGTTTTCT 60.322 50.000 0.00 0.00 0.00 2.52
658 679 7.102847 TCCGTATTTTGTTCTTTTTCCACTT 57.897 32.000 0.00 0.00 0.00 3.16
679 730 2.094734 GCGGTTGTTACCAAATACTCCG 59.905 50.000 0.00 0.00 45.31 4.63
680 731 3.075884 TGCGGTTGTTACCAAATACTCC 58.924 45.455 0.00 0.00 45.31 3.85
681 732 4.752661 TTGCGGTTGTTACCAAATACTC 57.247 40.909 0.00 0.00 45.31 2.59
682 733 4.555116 CGTTTGCGGTTGTTACCAAATACT 60.555 41.667 0.00 0.00 45.31 2.12
683 734 3.664947 CGTTTGCGGTTGTTACCAAATAC 59.335 43.478 0.00 0.00 45.31 1.89
684 735 3.562973 TCGTTTGCGGTTGTTACCAAATA 59.437 39.130 0.00 0.00 45.31 1.40
685 736 2.358267 TCGTTTGCGGTTGTTACCAAAT 59.642 40.909 0.00 0.00 45.31 2.32
750 801 2.352422 GATGGAGTGTGCAGGGCA 59.648 61.111 0.00 0.00 35.60 5.36
768 819 3.414700 GACGGTTGCGAGTGGCTG 61.415 66.667 0.00 0.00 44.05 4.85
795 865 2.100631 CGCTTGCTAGGGTTCGTGG 61.101 63.158 4.06 0.00 0.00 4.94
797 867 1.215647 CTCGCTTGCTAGGGTTCGT 59.784 57.895 11.65 0.00 35.88 3.85
954 1027 4.280677 AGATCCTTCAGGCTTAGATCGAAG 59.719 45.833 10.92 10.92 38.67 3.79
955 1028 4.038522 CAGATCCTTCAGGCTTAGATCGAA 59.961 45.833 0.00 0.00 38.67 3.71
1153 1226 0.820891 TCATACTCCCCGGCGTACTC 60.821 60.000 6.01 0.00 0.00 2.59
1193 1266 1.102978 TTGGATCGAGCGAGACATGA 58.897 50.000 0.00 0.00 0.00 3.07
1228 1301 6.182627 AGCAAGAATCTAATCAACATCCACA 58.817 36.000 0.00 0.00 0.00 4.17
1275 1348 6.814644 TGATACAAAACGTAATCAGTGGTAGG 59.185 38.462 0.00 0.00 32.59 3.18
1289 1362 9.925268 GGTAAACCATATAGTTGATACAAAACG 57.075 33.333 0.00 0.00 35.64 3.60
1309 1412 5.811100 CCCTATCGACTGAAGAAAGGTAAAC 59.189 44.000 0.00 0.00 0.00 2.01
1334 1437 4.109050 CTGCTAAACTCCGATCAGTCTTC 58.891 47.826 0.00 0.00 0.00 2.87
1358 1463 5.065988 GGTTTGAACATATCTTGCGTATGGT 59.934 40.000 0.00 0.00 34.58 3.55
1360 1465 6.183360 ACAGGTTTGAACATATCTTGCGTATG 60.183 38.462 0.00 0.00 36.01 2.39
1364 1469 4.437390 GGACAGGTTTGAACATATCTTGCG 60.437 45.833 0.00 0.00 0.00 4.85
1372 1477 6.098124 TCAAGAAAATGGACAGGTTTGAACAT 59.902 34.615 0.00 0.00 0.00 2.71
1379 1484 4.154942 AGCATCAAGAAAATGGACAGGTT 58.845 39.130 0.00 0.00 0.00 3.50
1393 1498 1.790623 GCACAGCACAAAAGCATCAAG 59.209 47.619 0.00 0.00 36.85 3.02
1394 1499 1.855513 GCACAGCACAAAAGCATCAA 58.144 45.000 0.00 0.00 36.85 2.57
1396 1501 0.318107 ACGCACAGCACAAAAGCATC 60.318 50.000 0.00 0.00 36.85 3.91
1414 1519 4.457834 ACATAGGTTGTCTAGCAGTGAC 57.542 45.455 0.00 0.00 30.89 3.67
1425 1530 6.814954 AGATTCTACATGGACATAGGTTGT 57.185 37.500 0.00 0.00 42.79 3.32
1430 1535 7.665690 ACTAGCAAGATTCTACATGGACATAG 58.334 38.462 0.00 0.00 0.00 2.23
1431 1536 7.603180 ACTAGCAAGATTCTACATGGACATA 57.397 36.000 0.00 0.00 0.00 2.29
1434 1539 6.109359 ACAACTAGCAAGATTCTACATGGAC 58.891 40.000 0.00 0.00 0.00 4.02
1445 1550 8.814038 ATCTGGAATTAAACAACTAGCAAGAT 57.186 30.769 0.00 0.00 0.00 2.40
1467 1574 7.665559 TGTTGGACTAGAGCATAACAAAAATCT 59.334 33.333 0.00 0.00 0.00 2.40
1468 1575 7.816640 TGTTGGACTAGAGCATAACAAAAATC 58.183 34.615 0.00 0.00 0.00 2.17
1469 1576 7.759489 TGTTGGACTAGAGCATAACAAAAAT 57.241 32.000 0.00 0.00 0.00 1.82
1470 1577 7.759489 ATGTTGGACTAGAGCATAACAAAAA 57.241 32.000 0.00 0.00 32.58 1.94
1471 1578 7.064134 CGTATGTTGGACTAGAGCATAACAAAA 59.936 37.037 0.00 0.00 32.58 2.44
1478 1591 4.037684 GGTACGTATGTTGGACTAGAGCAT 59.962 45.833 0.00 0.00 0.00 3.79
1483 1596 4.978083 AGTGGTACGTATGTTGGACTAG 57.022 45.455 0.00 0.00 0.00 2.57
1496 1609 2.426024 ACAGCTATGTGGTAGTGGTACG 59.574 50.000 0.00 0.00 38.57 3.67
1516 1631 7.712639 TCTCAATGATCACTAAAGCTGGATTAC 59.287 37.037 0.00 0.00 0.00 1.89
1522 1637 6.922247 ACATCTCAATGATCACTAAAGCTG 57.078 37.500 0.00 0.00 36.67 4.24
1527 1642 6.475504 ACACCAACATCTCAATGATCACTAA 58.524 36.000 0.00 0.00 36.67 2.24
1528 1643 6.053632 ACACCAACATCTCAATGATCACTA 57.946 37.500 0.00 0.00 36.67 2.74
1530 1645 5.633830 AACACCAACATCTCAATGATCAC 57.366 39.130 0.00 0.00 36.67 3.06
1541 1656 3.140325 TCAGGGAGAAACACCAACATC 57.860 47.619 0.00 0.00 0.00 3.06
1556 1671 5.070981 ACACTCAGTAATGATACCATCAGGG 59.929 44.000 0.00 0.00 43.53 4.45
1575 1690 2.484651 TCTCGTTACTGAGAGCACACTC 59.515 50.000 3.57 0.00 40.01 3.51
1577 1692 2.981140 GTTCTCGTTACTGAGAGCACAC 59.019 50.000 12.80 4.62 45.23 3.82
1578 1693 2.885266 AGTTCTCGTTACTGAGAGCACA 59.115 45.455 17.17 0.60 45.45 4.57
1595 1710 6.072112 TGTCCTGCTCAATTAACAAAGTTC 57.928 37.500 0.00 0.00 0.00 3.01
1597 1712 5.010012 CCTTGTCCTGCTCAATTAACAAAGT 59.990 40.000 0.00 0.00 0.00 2.66
1598 1713 5.241506 TCCTTGTCCTGCTCAATTAACAAAG 59.758 40.000 0.00 0.00 0.00 2.77
1599 1714 5.136828 TCCTTGTCCTGCTCAATTAACAAA 58.863 37.500 0.00 0.00 0.00 2.83
1600 1715 4.724399 TCCTTGTCCTGCTCAATTAACAA 58.276 39.130 0.00 0.00 0.00 2.83
1601 1716 4.326826 CTCCTTGTCCTGCTCAATTAACA 58.673 43.478 0.00 0.00 0.00 2.41
1602 1717 3.127721 GCTCCTTGTCCTGCTCAATTAAC 59.872 47.826 0.00 0.00 0.00 2.01
1604 1719 2.573462 AGCTCCTTGTCCTGCTCAATTA 59.427 45.455 0.00 0.00 0.00 1.40
1605 1720 1.353694 AGCTCCTTGTCCTGCTCAATT 59.646 47.619 0.00 0.00 0.00 2.32
1606 1721 0.990374 AGCTCCTTGTCCTGCTCAAT 59.010 50.000 0.00 0.00 0.00 2.57
1721 1867 2.933906 GCAATGATCAAATGGCAAGTGG 59.066 45.455 0.00 0.00 0.00 4.00
1768 1914 5.721000 AGAAAATTAGCATCAAACCATGGGA 59.279 36.000 18.09 3.91 0.00 4.37
1770 1916 6.632909 TCAGAAAATTAGCATCAAACCATGG 58.367 36.000 11.19 11.19 0.00 3.66
1959 2106 9.474920 ACACACCATTAAAAATCTGTACAAATG 57.525 29.630 0.00 2.23 0.00 2.32
1961 2108 9.522804 GAACACACCATTAAAAATCTGTACAAA 57.477 29.630 0.00 0.00 0.00 2.83
1964 2111 7.882179 AGGAACACACCATTAAAAATCTGTAC 58.118 34.615 0.00 0.00 0.00 2.90
2052 2199 8.140112 AGACTCAAAAGGTAGACAGATAACAT 57.860 34.615 0.00 0.00 0.00 2.71
2058 2205 8.647796 TCAATTAAGACTCAAAAGGTAGACAGA 58.352 33.333 0.00 0.00 0.00 3.41
2142 2290 3.085533 CGGTGGTAAATTCATCCAACCA 58.914 45.455 6.14 0.00 35.74 3.67
2162 2310 6.037940 TGGCTTAGTAGACAGTAGATAACACG 59.962 42.308 0.00 0.00 33.31 4.49
2183 2331 1.821136 GCCTGAAGCAGTAAAATGGCT 59.179 47.619 0.00 0.00 42.97 4.75
2204 2352 2.100584 TGGCAAGTGGCTAAACAAGTTG 59.899 45.455 0.00 0.00 44.01 3.16
2206 2354 2.065899 TGGCAAGTGGCTAAACAAGT 57.934 45.000 6.41 0.00 44.01 3.16
2224 2372 9.840427 TTCAGACTAAAGTTTTCAAAAGACTTG 57.160 29.630 0.00 0.00 34.13 3.16
2239 2387 3.476552 TGGTGCAGGTTTCAGACTAAAG 58.523 45.455 0.00 0.00 0.00 1.85
2256 2405 4.096984 GGAGTGAATAAAGCAAGGATGGTG 59.903 45.833 0.00 0.00 37.35 4.17
2309 2458 8.952278 TGCCTATAGTTTGTACCAACATTTAAG 58.048 33.333 11.97 2.79 34.97 1.85
2361 2511 5.139727 TGGATCACTTGAAATCTTGGTTGT 58.860 37.500 0.00 0.00 0.00 3.32
2578 2729 2.184322 CCATAGACGCGCACAGGT 59.816 61.111 5.73 0.00 0.00 4.00
2586 2740 2.455674 TGGATATGCACCATAGACGC 57.544 50.000 0.00 0.00 32.03 5.19
2715 2880 2.969821 ATGGCCACAGGAAGTTGTTA 57.030 45.000 8.16 0.00 0.00 2.41
2799 2964 4.617520 TTCTCGCGGTTGCCAGCA 62.618 61.111 6.13 0.00 38.08 4.41
2811 2976 3.182967 GAGCTGGTTGATGTAGTTCTCG 58.817 50.000 0.00 0.00 0.00 4.04
2941 3113 5.410924 TCATCCAAACATGTCTAGTTCTCG 58.589 41.667 0.00 0.00 0.00 4.04
3041 3214 8.943909 AAGACCAAATAAAATAGTAGAGGACG 57.056 34.615 0.00 0.00 0.00 4.79
3121 3313 4.660771 CACCTTATATCTTGGGAAGGAGGT 59.339 45.833 6.52 0.00 40.88 3.85
3234 3473 1.202855 ACATCCTTGCAGAACAGCACT 60.203 47.619 0.00 0.00 45.61 4.40
3338 3578 7.274468 TGCAACGCAATACACTTTATATTTTGG 59.726 33.333 0.00 0.00 34.76 3.28
3364 3604 4.759516 AAACAAATATCCAACGAGCGTT 57.240 36.364 1.93 1.93 39.13 4.84
3367 3607 5.355910 TCCCTAAAACAAATATCCAACGAGC 59.644 40.000 0.00 0.00 0.00 5.03
3370 3610 8.247562 TCAAATCCCTAAAACAAATATCCAACG 58.752 33.333 0.00 0.00 0.00 4.10
3397 3637 8.752005 AGCTTGCCTGATATAAGAAAATGTAA 57.248 30.769 0.00 0.00 0.00 2.41
3398 3638 7.445402 GGAGCTTGCCTGATATAAGAAAATGTA 59.555 37.037 0.00 0.00 0.00 2.29
3399 3639 6.264067 GGAGCTTGCCTGATATAAGAAAATGT 59.736 38.462 0.00 0.00 0.00 2.71
3400 3640 6.489361 AGGAGCTTGCCTGATATAAGAAAATG 59.511 38.462 0.00 0.00 36.76 2.32
3402 3642 6.006275 AGGAGCTTGCCTGATATAAGAAAA 57.994 37.500 0.00 0.00 36.76 2.29
3403 3643 5.367937 AGAGGAGCTTGCCTGATATAAGAAA 59.632 40.000 0.00 0.00 38.73 2.52
3405 3645 4.487804 AGAGGAGCTTGCCTGATATAAGA 58.512 43.478 0.00 0.00 38.73 2.10
3406 3646 4.888326 AGAGGAGCTTGCCTGATATAAG 57.112 45.455 0.00 0.00 38.73 1.73
3409 3649 5.839517 AAATAGAGGAGCTTGCCTGATAT 57.160 39.130 0.00 0.00 38.73 1.63
3410 3650 5.841237 AGTAAATAGAGGAGCTTGCCTGATA 59.159 40.000 0.00 0.00 38.73 2.15
3411 3651 4.657969 AGTAAATAGAGGAGCTTGCCTGAT 59.342 41.667 0.00 0.00 38.73 2.90
3413 3653 4.141846 TGAGTAAATAGAGGAGCTTGCCTG 60.142 45.833 0.00 0.00 38.73 4.85
3414 3654 4.033709 TGAGTAAATAGAGGAGCTTGCCT 58.966 43.478 0.00 0.00 42.17 4.75
3415 3655 4.408182 TGAGTAAATAGAGGAGCTTGCC 57.592 45.455 0.00 0.00 0.00 4.52
3416 3656 5.363939 ACATGAGTAAATAGAGGAGCTTGC 58.636 41.667 0.00 0.00 0.00 4.01
3417 3657 6.577103 TGACATGAGTAAATAGAGGAGCTTG 58.423 40.000 0.00 0.00 0.00 4.01
3418 3658 6.798427 TGACATGAGTAAATAGAGGAGCTT 57.202 37.500 0.00 0.00 0.00 3.74
3419 3659 6.798427 TTGACATGAGTAAATAGAGGAGCT 57.202 37.500 0.00 0.00 0.00 4.09
3420 3660 9.202273 CTAATTGACATGAGTAAATAGAGGAGC 57.798 37.037 0.00 0.00 28.30 4.70
3426 3666 9.823647 ACCTGACTAATTGACATGAGTAAATAG 57.176 33.333 0.00 1.32 28.30 1.73
3427 3667 9.599866 CACCTGACTAATTGACATGAGTAAATA 57.400 33.333 0.00 0.00 28.30 1.40
3428 3668 8.103305 ACACCTGACTAATTGACATGAGTAAAT 58.897 33.333 0.00 0.00 29.60 1.40
3429 3669 7.450074 ACACCTGACTAATTGACATGAGTAAA 58.550 34.615 0.00 0.00 0.00 2.01
3430 3670 7.004555 ACACCTGACTAATTGACATGAGTAA 57.995 36.000 0.00 0.00 0.00 2.24
3431 3671 6.605471 ACACCTGACTAATTGACATGAGTA 57.395 37.500 0.00 0.00 0.00 2.59
3432 3672 5.489792 ACACCTGACTAATTGACATGAGT 57.510 39.130 0.00 0.00 0.00 3.41
3433 3673 7.984050 AGATTACACCTGACTAATTGACATGAG 59.016 37.037 0.00 0.00 0.00 2.90
3434 3674 7.851228 AGATTACACCTGACTAATTGACATGA 58.149 34.615 0.00 0.00 0.00 3.07
3435 3675 7.043125 CGAGATTACACCTGACTAATTGACATG 60.043 40.741 0.00 0.00 0.00 3.21
3460 3700 9.592720 AAAGAAAATTTTCACAAGTTTTGAACG 57.407 25.926 28.00 0.00 39.61 3.95
3469 3709 7.011669 AGGCACATGAAAGAAAATTTTCACAAG 59.988 33.333 28.00 21.85 46.44 3.16
3472 3712 6.849588 AGGCACATGAAAGAAAATTTTCAC 57.150 33.333 28.00 19.46 46.44 3.18
3506 3746 9.321562 ACATAGGATGTATAGTTTTTAACACGG 57.678 33.333 0.00 0.00 42.78 4.94
3520 3760 8.386264 CCCTCCATTCTTAAACATAGGATGTAT 58.614 37.037 0.00 0.00 44.07 2.29
3521 3761 7.570982 TCCCTCCATTCTTAAACATAGGATGTA 59.429 37.037 0.00 0.00 44.07 2.29
3523 3763 6.841601 TCCCTCCATTCTTAAACATAGGATG 58.158 40.000 0.00 0.00 0.00 3.51
3524 3764 6.621514 ACTCCCTCCATTCTTAAACATAGGAT 59.378 38.462 0.00 0.00 0.00 3.24
3525 3765 5.970640 ACTCCCTCCATTCTTAAACATAGGA 59.029 40.000 0.00 0.00 0.00 2.94
3526 3766 6.253946 ACTCCCTCCATTCTTAAACATAGG 57.746 41.667 0.00 0.00 0.00 2.57
3527 3767 8.432805 ACATACTCCCTCCATTCTTAAACATAG 58.567 37.037 0.00 0.00 0.00 2.23
3528 3768 8.331931 ACATACTCCCTCCATTCTTAAACATA 57.668 34.615 0.00 0.00 0.00 2.29
3529 3769 7.213178 ACATACTCCCTCCATTCTTAAACAT 57.787 36.000 0.00 0.00 0.00 2.71
3530 3770 6.636454 ACATACTCCCTCCATTCTTAAACA 57.364 37.500 0.00 0.00 0.00 2.83
3534 3774 8.582437 CGTTAATACATACTCCCTCCATTCTTA 58.418 37.037 0.00 0.00 0.00 2.10
3535 3775 7.442656 CGTTAATACATACTCCCTCCATTCTT 58.557 38.462 0.00 0.00 0.00 2.52
3536 3776 6.014499 CCGTTAATACATACTCCCTCCATTCT 60.014 42.308 0.00 0.00 0.00 2.40
3537 3777 6.164176 CCGTTAATACATACTCCCTCCATTC 58.836 44.000 0.00 0.00 0.00 2.67
3538 3778 5.605488 ACCGTTAATACATACTCCCTCCATT 59.395 40.000 0.00 0.00 0.00 3.16
3539 3779 5.152934 ACCGTTAATACATACTCCCTCCAT 58.847 41.667 0.00 0.00 0.00 3.41
3548 3788 6.739550 GCACAACTTTGACCGTTAATACATAC 59.260 38.462 0.00 0.00 0.00 2.39
3564 3804 4.023707 GCACTGTCTCTTATGCACAACTTT 60.024 41.667 0.00 0.00 38.00 2.66
3576 3816 7.094205 CCCAAAATATACTTTGCACTGTCTCTT 60.094 37.037 1.08 0.00 35.38 2.85
3583 3823 6.252995 TCCTTCCCAAAATATACTTTGCACT 58.747 36.000 1.08 0.00 35.38 4.40
3635 3887 3.879892 GAGAGGAAATTAGCGCCAAAGAT 59.120 43.478 2.29 0.00 0.00 2.40
3657 3909 4.466015 GGAGAAGGATTGCCTCTAGGATAG 59.534 50.000 0.00 0.00 46.28 2.08
3711 3974 3.427503 CCCTTTTTGCGCTTGTATACAGG 60.428 47.826 9.73 10.51 0.00 4.00
3712 3975 3.427503 CCCCTTTTTGCGCTTGTATACAG 60.428 47.826 9.73 2.17 0.00 2.74
3734 3997 2.814336 CCCTACAAGAACAGCAAGGAAC 59.186 50.000 0.00 0.00 0.00 3.62
3754 4017 5.411669 CCTGGTGATAGAAACTAAACACACC 59.588 44.000 0.00 0.00 44.31 4.16
3756 4019 5.995282 CACCTGGTGATAGAAACTAAACACA 59.005 40.000 22.33 0.00 35.23 3.72
3757 4020 5.411669 CCACCTGGTGATAGAAACTAAACAC 59.588 44.000 27.94 0.00 35.23 3.32
3758 4021 5.308497 TCCACCTGGTGATAGAAACTAAACA 59.692 40.000 27.94 0.00 35.23 2.83
3759 4022 5.801380 TCCACCTGGTGATAGAAACTAAAC 58.199 41.667 27.94 0.00 35.23 2.01
3762 4025 7.931015 ATATTCCACCTGGTGATAGAAACTA 57.069 36.000 27.94 12.62 35.23 2.24
3765 4028 8.163408 CCATTATATTCCACCTGGTGATAGAAA 58.837 37.037 27.94 15.41 35.23 2.52
3766 4029 7.257016 CCCATTATATTCCACCTGGTGATAGAA 60.257 40.741 27.94 21.13 35.23 2.10
3767 4030 6.215431 CCCATTATATTCCACCTGGTGATAGA 59.785 42.308 27.94 13.82 35.23 1.98
3768 4031 6.012508 ACCCATTATATTCCACCTGGTGATAG 60.013 42.308 27.94 11.60 35.23 2.08
3769 4032 5.855040 ACCCATTATATTCCACCTGGTGATA 59.145 40.000 27.94 17.86 35.23 2.15
3770 4033 4.669768 ACCCATTATATTCCACCTGGTGAT 59.330 41.667 27.94 16.27 35.23 3.06
3771 4034 4.051478 ACCCATTATATTCCACCTGGTGA 58.949 43.478 27.94 9.64 35.23 4.02
3772 4035 4.398319 GACCCATTATATTCCACCTGGTG 58.602 47.826 20.01 20.01 36.34 4.17
3773 4036 3.397955 GGACCCATTATATTCCACCTGGT 59.602 47.826 0.00 0.00 36.34 4.00
3775 4038 3.326588 TCGGACCCATTATATTCCACCTG 59.673 47.826 0.00 0.00 0.00 4.00
3778 4041 3.671716 GGTCGGACCCATTATATTCCAC 58.328 50.000 16.55 0.00 30.04 4.02
3791 4054 4.530857 CTGGATGCGGGTCGGACC 62.531 72.222 19.06 19.06 37.60 4.46
3792 4055 4.530857 CCTGGATGCGGGTCGGAC 62.531 72.222 3.38 0.00 0.00 4.79
3793 4056 4.770362 TCCTGGATGCGGGTCGGA 62.770 66.667 12.41 0.00 0.00 4.55
3794 4057 4.530857 GTCCTGGATGCGGGTCGG 62.531 72.222 12.41 0.00 0.00 4.79
3795 4058 3.432051 GAGTCCTGGATGCGGGTCG 62.432 68.421 12.41 0.00 0.00 4.79
3796 4059 2.501610 GAGTCCTGGATGCGGGTC 59.498 66.667 12.41 6.60 0.00 4.46
3797 4060 3.461773 CGAGTCCTGGATGCGGGT 61.462 66.667 12.41 0.00 0.00 5.28
3799 4062 1.519455 GAACGAGTCCTGGATGCGG 60.519 63.158 20.19 5.96 0.00 5.69
3800 4063 1.874019 CGAACGAGTCCTGGATGCG 60.874 63.158 16.31 16.31 0.00 4.73
3801 4064 0.526524 CTCGAACGAGTCCTGGATGC 60.527 60.000 14.87 0.00 37.47 3.91
3802 4065 3.631714 CTCGAACGAGTCCTGGATG 57.368 57.895 14.87 0.00 37.47 3.51
3811 4074 1.260561 CCAACCAAACACTCGAACGAG 59.739 52.381 20.25 20.25 46.91 4.18
3813 4076 0.306533 CCCAACCAAACACTCGAACG 59.693 55.000 0.00 0.00 0.00 3.95
3814 4077 1.332686 GACCCAACCAAACACTCGAAC 59.667 52.381 0.00 0.00 0.00 3.95
3817 4080 0.531090 TCGACCCAACCAAACACTCG 60.531 55.000 0.00 0.00 0.00 4.18
3818 4081 1.226746 CTCGACCCAACCAAACACTC 58.773 55.000 0.00 0.00 0.00 3.51
3819 4082 0.179029 CCTCGACCCAACCAAACACT 60.179 55.000 0.00 0.00 0.00 3.55
3820 4083 1.170290 CCCTCGACCCAACCAAACAC 61.170 60.000 0.00 0.00 0.00 3.32
3822 4085 1.602605 CCCCTCGACCCAACCAAAC 60.603 63.158 0.00 0.00 0.00 2.93
3825 4088 4.257810 TCCCCCTCGACCCAACCA 62.258 66.667 0.00 0.00 0.00 3.67
3828 4091 1.916777 GTTCTCCCCCTCGACCCAA 60.917 63.158 0.00 0.00 0.00 4.12
3829 4092 2.284405 GTTCTCCCCCTCGACCCA 60.284 66.667 0.00 0.00 0.00 4.51
3830 4093 3.082055 GGTTCTCCCCCTCGACCC 61.082 72.222 0.00 0.00 0.00 4.46
3831 4094 1.916777 TTGGTTCTCCCCCTCGACC 60.917 63.158 0.00 0.00 0.00 4.79
3833 4096 3.801620 GTTGGTTCTCCCCCTCGA 58.198 61.111 0.00 0.00 0.00 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.