Multiple sequence alignment - TraesCS2B01G453800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G453800 chr2B 100.000 2198 0 0 1 2198 647602883 647605080 0.000000e+00 4060.0
1 TraesCS2B01G453800 chr2B 83.044 519 55 20 850 1361 647450924 647451416 7.200000e-120 440.0
2 TraesCS2B01G453800 chr2B 86.634 404 38 10 858 1257 647538946 647539337 1.210000e-117 433.0
3 TraesCS2B01G453800 chr2B 87.730 326 32 8 1 320 15587659 15587982 7.410000e-100 374.0
4 TraesCS2B01G453800 chr2B 82.400 125 11 5 1446 1570 647451458 647451571 4.990000e-17 99.0
5 TraesCS2B01G453800 chr2B 96.078 51 2 0 1 51 762245278 762245228 1.400000e-12 84.2
6 TraesCS2B01G453800 chr2D 86.250 1280 74 44 617 1873 542777653 542778853 0.000000e+00 1295.0
7 TraesCS2B01G453800 chr2D 86.063 574 44 19 706 1257 542710277 542710836 3.140000e-163 584.0
8 TraesCS2B01G453800 chr2D 82.206 562 51 29 810 1361 542328631 542329153 2.590000e-119 438.0
9 TraesCS2B01G453800 chr2D 81.117 609 54 38 757 1361 542543754 542544305 4.340000e-117 431.0
10 TraesCS2B01G453800 chr2D 93.529 170 10 1 2030 2198 542781820 542781989 3.620000e-63 252.0
11 TraesCS2B01G453800 chr2A 88.650 652 49 12 1558 2198 685492052 685492689 0.000000e+00 771.0
12 TraesCS2B01G453800 chr2A 88.294 598 32 17 622 1202 685410314 685410890 0.000000e+00 682.0
13 TraesCS2B01G453800 chr2A 83.885 695 74 25 801 1479 685491355 685492027 1.430000e-176 628.0
14 TraesCS2B01G453800 chr2A 83.514 552 68 13 810 1357 685626665 685627197 5.450000e-136 494.0
15 TraesCS2B01G453800 chr2A 84.524 504 41 22 758 1257 685373446 685373916 4.270000e-127 464.0
16 TraesCS2B01G453800 chr2A 84.116 447 28 16 1447 1882 685411054 685411468 2.050000e-105 392.0
17 TraesCS2B01G453800 chr2A 93.886 229 13 1 363 591 685409987 685410214 5.810000e-91 344.0
18 TraesCS2B01G453800 chr2A 84.848 132 18 2 2029 2158 685413289 685413420 4.920000e-27 132.0
19 TraesCS2B01G453800 chr2A 77.055 292 26 15 1716 1975 685627641 685627923 1.770000e-26 130.0
20 TraesCS2B01G453800 chr2A 85.417 96 8 2 1447 1542 685374041 685374130 6.460000e-16 95.3
21 TraesCS2B01G453800 chr2A 84.211 76 4 1 1544 1611 685627462 685627537 1.410000e-07 67.6
22 TraesCS2B01G453800 chr4B 91.304 322 26 2 1 321 248126804 248126484 2.590000e-119 438.0
23 TraesCS2B01G453800 chr4B 82.822 163 13 9 1 148 659016421 659016259 4.920000e-27 132.0
24 TraesCS2B01G453800 chr5B 87.025 316 35 6 1 311 94286868 94287182 3.470000e-93 351.0
25 TraesCS2B01G453800 chr1B 86.032 315 37 7 1 309 142316111 142315798 4.520000e-87 331.0
26 TraesCS2B01G453800 chr3A 95.455 44 2 0 320 363 479073234 479073191 1.090000e-08 71.3
27 TraesCS2B01G453800 chr7B 97.436 39 1 0 325 363 321250546 321250584 1.410000e-07 67.6
28 TraesCS2B01G453800 chr7A 97.436 39 1 0 325 363 403291756 403291718 1.410000e-07 67.6
29 TraesCS2B01G453800 chr4D 97.143 35 1 0 329 363 58381032 58380998 2.360000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G453800 chr2B 647602883 647605080 2197 False 4060.000000 4060 100.000000 1 2198 1 chr2B.!!$F3 2197
1 TraesCS2B01G453800 chr2B 647450924 647451571 647 False 269.500000 440 82.722000 850 1570 2 chr2B.!!$F4 720
2 TraesCS2B01G453800 chr2D 542777653 542781989 4336 False 773.500000 1295 89.889500 617 2198 2 chr2D.!!$F4 1581
3 TraesCS2B01G453800 chr2D 542710277 542710836 559 False 584.000000 584 86.063000 706 1257 1 chr2D.!!$F3 551
4 TraesCS2B01G453800 chr2D 542328631 542329153 522 False 438.000000 438 82.206000 810 1361 1 chr2D.!!$F1 551
5 TraesCS2B01G453800 chr2D 542543754 542544305 551 False 431.000000 431 81.117000 757 1361 1 chr2D.!!$F2 604
6 TraesCS2B01G453800 chr2A 685491355 685492689 1334 False 699.500000 771 86.267500 801 2198 2 chr2A.!!$F3 1397
7 TraesCS2B01G453800 chr2A 685409987 685413420 3433 False 387.500000 682 87.786000 363 2158 4 chr2A.!!$F2 1795
8 TraesCS2B01G453800 chr2A 685373446 685374130 684 False 279.650000 464 84.970500 758 1542 2 chr2A.!!$F1 784
9 TraesCS2B01G453800 chr2A 685626665 685627923 1258 False 230.533333 494 81.593333 810 1975 3 chr2A.!!$F4 1165

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
295 296 0.03254 ACGTACGACCAGAAACCCAC 59.967 55.0 24.41 0.0 0.0 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1299 1447 0.03759 TAAGCACGGCCAACAGGAAT 59.962 50.0 2.24 0.0 0.0 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 2.160822 CCAATCGGGCATCTGTCTAG 57.839 55.000 0.00 0.00 0.00 2.43
38 39 1.688735 CCAATCGGGCATCTGTCTAGA 59.311 52.381 0.00 0.00 37.35 2.43
39 40 2.288702 CCAATCGGGCATCTGTCTAGAG 60.289 54.545 0.00 0.00 36.14 2.43
40 41 2.625314 CAATCGGGCATCTGTCTAGAGA 59.375 50.000 0.00 0.00 36.14 3.10
41 42 2.437085 TCGGGCATCTGTCTAGAGAA 57.563 50.000 0.00 0.00 36.14 2.87
42 43 2.735151 TCGGGCATCTGTCTAGAGAAA 58.265 47.619 0.00 0.00 36.14 2.52
43 44 3.096852 TCGGGCATCTGTCTAGAGAAAA 58.903 45.455 0.00 0.00 36.14 2.29
44 45 3.131223 TCGGGCATCTGTCTAGAGAAAAG 59.869 47.826 0.00 0.00 36.14 2.27
45 46 3.739519 CGGGCATCTGTCTAGAGAAAAGG 60.740 52.174 0.00 0.00 36.14 3.11
46 47 3.432890 GGGCATCTGTCTAGAGAAAAGGG 60.433 52.174 0.00 0.00 36.14 3.95
47 48 3.432890 GGCATCTGTCTAGAGAAAAGGGG 60.433 52.174 0.00 0.00 36.14 4.79
48 49 3.432890 GCATCTGTCTAGAGAAAAGGGGG 60.433 52.174 0.00 0.00 36.14 5.40
49 50 3.847042 TCTGTCTAGAGAAAAGGGGGA 57.153 47.619 0.00 0.00 0.00 4.81
50 51 3.714144 TCTGTCTAGAGAAAAGGGGGAG 58.286 50.000 0.00 0.00 0.00 4.30
51 52 2.169561 CTGTCTAGAGAAAAGGGGGAGC 59.830 54.545 0.00 0.00 0.00 4.70
52 53 2.188817 GTCTAGAGAAAAGGGGGAGCA 58.811 52.381 0.00 0.00 0.00 4.26
53 54 2.572104 GTCTAGAGAAAAGGGGGAGCAA 59.428 50.000 0.00 0.00 0.00 3.91
54 55 3.009143 GTCTAGAGAAAAGGGGGAGCAAA 59.991 47.826 0.00 0.00 0.00 3.68
55 56 3.655777 TCTAGAGAAAAGGGGGAGCAAAA 59.344 43.478 0.00 0.00 0.00 2.44
56 57 3.328535 AGAGAAAAGGGGGAGCAAAAA 57.671 42.857 0.00 0.00 0.00 1.94
57 58 3.234353 AGAGAAAAGGGGGAGCAAAAAG 58.766 45.455 0.00 0.00 0.00 2.27
58 59 2.300152 GAGAAAAGGGGGAGCAAAAAGG 59.700 50.000 0.00 0.00 0.00 3.11
59 60 1.347707 GAAAAGGGGGAGCAAAAAGGG 59.652 52.381 0.00 0.00 0.00 3.95
60 61 0.565674 AAAGGGGGAGCAAAAAGGGA 59.434 50.000 0.00 0.00 0.00 4.20
61 62 0.115152 AAGGGGGAGCAAAAAGGGAG 59.885 55.000 0.00 0.00 0.00 4.30
62 63 1.074296 AGGGGGAGCAAAAAGGGAGT 61.074 55.000 0.00 0.00 0.00 3.85
63 64 0.702316 GGGGGAGCAAAAAGGGAGTA 59.298 55.000 0.00 0.00 0.00 2.59
64 65 1.076513 GGGGGAGCAAAAAGGGAGTAA 59.923 52.381 0.00 0.00 0.00 2.24
65 66 2.292257 GGGGGAGCAAAAAGGGAGTAAT 60.292 50.000 0.00 0.00 0.00 1.89
66 67 3.053170 GGGGGAGCAAAAAGGGAGTAATA 60.053 47.826 0.00 0.00 0.00 0.98
67 68 4.207955 GGGGAGCAAAAAGGGAGTAATAG 58.792 47.826 0.00 0.00 0.00 1.73
68 69 4.079958 GGGGAGCAAAAAGGGAGTAATAGA 60.080 45.833 0.00 0.00 0.00 1.98
69 70 5.126779 GGGAGCAAAAAGGGAGTAATAGAG 58.873 45.833 0.00 0.00 0.00 2.43
70 71 5.104485 GGGAGCAAAAAGGGAGTAATAGAGA 60.104 44.000 0.00 0.00 0.00 3.10
71 72 6.415573 GGAGCAAAAAGGGAGTAATAGAGAA 58.584 40.000 0.00 0.00 0.00 2.87
72 73 6.884836 GGAGCAAAAAGGGAGTAATAGAGAAA 59.115 38.462 0.00 0.00 0.00 2.52
73 74 7.393515 GGAGCAAAAAGGGAGTAATAGAGAAAA 59.606 37.037 0.00 0.00 0.00 2.29
74 75 8.706322 AGCAAAAAGGGAGTAATAGAGAAAAA 57.294 30.769 0.00 0.00 0.00 1.94
75 76 8.797438 AGCAAAAAGGGAGTAATAGAGAAAAAG 58.203 33.333 0.00 0.00 0.00 2.27
76 77 8.029522 GCAAAAAGGGAGTAATAGAGAAAAAGG 58.970 37.037 0.00 0.00 0.00 3.11
77 78 8.523658 CAAAAAGGGAGTAATAGAGAAAAAGGG 58.476 37.037 0.00 0.00 0.00 3.95
78 79 5.977821 AGGGAGTAATAGAGAAAAAGGGG 57.022 43.478 0.00 0.00 0.00 4.79
79 80 5.610791 AGGGAGTAATAGAGAAAAAGGGGA 58.389 41.667 0.00 0.00 0.00 4.81
80 81 5.668080 AGGGAGTAATAGAGAAAAAGGGGAG 59.332 44.000 0.00 0.00 0.00 4.30
81 82 5.666265 GGGAGTAATAGAGAAAAAGGGGAGA 59.334 44.000 0.00 0.00 0.00 3.71
82 83 6.330514 GGGAGTAATAGAGAAAAAGGGGAGAT 59.669 42.308 0.00 0.00 0.00 2.75
83 84 7.220740 GGAGTAATAGAGAAAAAGGGGAGATG 58.779 42.308 0.00 0.00 0.00 2.90
84 85 7.142995 AGTAATAGAGAAAAAGGGGAGATGG 57.857 40.000 0.00 0.00 0.00 3.51
85 86 5.394562 AATAGAGAAAAAGGGGAGATGGG 57.605 43.478 0.00 0.00 0.00 4.00
86 87 1.925959 AGAGAAAAAGGGGAGATGGGG 59.074 52.381 0.00 0.00 0.00 4.96
87 88 1.010795 AGAAAAAGGGGAGATGGGGG 58.989 55.000 0.00 0.00 0.00 5.40
88 89 1.007607 GAAAAAGGGGAGATGGGGGA 58.992 55.000 0.00 0.00 0.00 4.81
89 90 1.575788 GAAAAAGGGGAGATGGGGGAT 59.424 52.381 0.00 0.00 0.00 3.85
90 91 1.235756 AAAAGGGGAGATGGGGGATC 58.764 55.000 0.00 0.00 0.00 3.36
91 92 0.047802 AAAGGGGAGATGGGGGATCA 59.952 55.000 0.00 0.00 32.86 2.92
92 93 0.047802 AAGGGGAGATGGGGGATCAA 59.952 55.000 0.00 0.00 32.86 2.57
93 94 0.047802 AGGGGAGATGGGGGATCAAA 59.952 55.000 0.00 0.00 32.86 2.69
94 95 0.186143 GGGGAGATGGGGGATCAAAC 59.814 60.000 0.00 0.00 32.86 2.93
95 96 0.186143 GGGAGATGGGGGATCAAACC 59.814 60.000 0.00 0.00 32.86 3.27
96 97 1.226311 GGAGATGGGGGATCAAACCT 58.774 55.000 0.00 0.00 32.86 3.50
97 98 1.133668 GGAGATGGGGGATCAAACCTG 60.134 57.143 0.00 0.00 32.86 4.00
98 99 0.929244 AGATGGGGGATCAAACCTGG 59.071 55.000 0.00 0.00 32.86 4.45
99 100 0.106015 GATGGGGGATCAAACCTGGG 60.106 60.000 0.00 0.00 0.00 4.45
100 101 0.855400 ATGGGGGATCAAACCTGGGT 60.855 55.000 0.00 0.00 0.00 4.51
101 102 1.306633 GGGGGATCAAACCTGGGTC 59.693 63.158 0.00 0.00 0.00 4.46
102 103 1.214992 GGGGGATCAAACCTGGGTCT 61.215 60.000 0.00 0.00 0.00 3.85
103 104 0.704664 GGGGATCAAACCTGGGTCTT 59.295 55.000 0.00 0.00 0.00 3.01
104 105 1.920351 GGGGATCAAACCTGGGTCTTA 59.080 52.381 0.00 0.00 0.00 2.10
105 106 2.514160 GGGGATCAAACCTGGGTCTTAT 59.486 50.000 0.00 0.00 0.00 1.73
106 107 3.720002 GGGGATCAAACCTGGGTCTTATA 59.280 47.826 0.00 0.00 0.00 0.98
107 108 4.202472 GGGGATCAAACCTGGGTCTTATAG 60.202 50.000 0.00 0.00 0.00 1.31
108 109 4.202472 GGGATCAAACCTGGGTCTTATAGG 60.202 50.000 0.00 0.00 37.61 2.57
109 110 4.412528 GGATCAAACCTGGGTCTTATAGGT 59.587 45.833 0.00 0.00 46.38 3.08
110 111 4.837093 TCAAACCTGGGTCTTATAGGTG 57.163 45.455 0.00 0.00 43.75 4.00
111 112 3.521937 TCAAACCTGGGTCTTATAGGTGG 59.478 47.826 0.00 0.00 43.75 4.61
112 113 3.502051 AACCTGGGTCTTATAGGTGGA 57.498 47.619 0.00 0.00 43.75 4.02
113 114 3.502051 ACCTGGGTCTTATAGGTGGAA 57.498 47.619 0.00 0.00 42.95 3.53
114 115 3.385115 ACCTGGGTCTTATAGGTGGAAG 58.615 50.000 0.00 0.00 42.95 3.46
115 116 3.013648 ACCTGGGTCTTATAGGTGGAAGA 59.986 47.826 0.00 0.00 42.95 2.87
116 117 3.643792 CCTGGGTCTTATAGGTGGAAGAG 59.356 52.174 0.00 0.00 32.43 2.85
117 118 4.547671 CTGGGTCTTATAGGTGGAAGAGA 58.452 47.826 0.00 0.00 32.43 3.10
118 119 4.547671 TGGGTCTTATAGGTGGAAGAGAG 58.452 47.826 0.00 0.00 32.43 3.20
119 120 4.232122 TGGGTCTTATAGGTGGAAGAGAGA 59.768 45.833 0.00 0.00 32.43 3.10
120 121 4.830600 GGGTCTTATAGGTGGAAGAGAGAG 59.169 50.000 0.00 0.00 32.43 3.20
121 122 5.399267 GGGTCTTATAGGTGGAAGAGAGAGA 60.399 48.000 0.00 0.00 32.43 3.10
122 123 5.768164 GGTCTTATAGGTGGAAGAGAGAGAG 59.232 48.000 0.00 0.00 32.43 3.20
123 124 6.362248 GTCTTATAGGTGGAAGAGAGAGAGT 58.638 44.000 0.00 0.00 32.43 3.24
124 125 6.485648 GTCTTATAGGTGGAAGAGAGAGAGTC 59.514 46.154 0.00 0.00 32.43 3.36
125 126 2.525105 AGGTGGAAGAGAGAGAGTCC 57.475 55.000 0.00 0.00 0.00 3.85
126 127 1.713647 AGGTGGAAGAGAGAGAGTCCA 59.286 52.381 0.00 0.00 37.83 4.02
127 128 2.099405 GGTGGAAGAGAGAGAGTCCAG 58.901 57.143 0.00 0.00 40.79 3.86
128 129 1.476488 GTGGAAGAGAGAGAGTCCAGC 59.524 57.143 0.00 0.00 40.79 4.85
129 130 1.111277 GGAAGAGAGAGAGTCCAGCC 58.889 60.000 0.00 0.00 0.00 4.85
130 131 1.618345 GGAAGAGAGAGAGTCCAGCCA 60.618 57.143 0.00 0.00 0.00 4.75
131 132 1.750778 GAAGAGAGAGAGTCCAGCCAG 59.249 57.143 0.00 0.00 0.00 4.85
132 133 0.704076 AGAGAGAGAGTCCAGCCAGT 59.296 55.000 0.00 0.00 0.00 4.00
133 134 1.919654 AGAGAGAGAGTCCAGCCAGTA 59.080 52.381 0.00 0.00 0.00 2.74
134 135 2.092429 AGAGAGAGAGTCCAGCCAGTAG 60.092 54.545 0.00 0.00 0.00 2.57
135 136 1.064017 AGAGAGAGTCCAGCCAGTAGG 60.064 57.143 0.00 0.00 38.23 3.18
136 137 0.032615 AGAGAGTCCAGCCAGTAGGG 60.033 60.000 0.00 0.00 40.85 3.53
162 163 2.684655 CCCCTGGCATTTGGTGGG 60.685 66.667 0.32 0.32 37.68 4.61
163 164 2.684655 CCCTGGCATTTGGTGGGG 60.685 66.667 0.00 0.00 34.46 4.96
164 165 2.684655 CCTGGCATTTGGTGGGGG 60.685 66.667 0.00 0.00 0.00 5.40
165 166 2.444696 CTGGCATTTGGTGGGGGA 59.555 61.111 0.00 0.00 0.00 4.81
166 167 1.002017 CTGGCATTTGGTGGGGGAT 59.998 57.895 0.00 0.00 0.00 3.85
167 168 1.001503 TGGCATTTGGTGGGGGATC 59.998 57.895 0.00 0.00 0.00 3.36
168 169 1.001503 GGCATTTGGTGGGGGATCA 59.998 57.895 0.00 0.00 0.00 2.92
169 170 1.044790 GGCATTTGGTGGGGGATCAG 61.045 60.000 0.00 0.00 0.00 2.90
170 171 0.033208 GCATTTGGTGGGGGATCAGA 60.033 55.000 0.00 0.00 0.00 3.27
171 172 1.767759 CATTTGGTGGGGGATCAGAC 58.232 55.000 0.00 0.00 0.00 3.51
172 173 1.005805 CATTTGGTGGGGGATCAGACA 59.994 52.381 0.00 0.00 0.00 3.41
173 174 0.404040 TTTGGTGGGGGATCAGACAC 59.596 55.000 0.00 0.00 0.00 3.67
174 175 0.475632 TTGGTGGGGGATCAGACACT 60.476 55.000 11.15 0.00 34.42 3.55
175 176 0.415830 TGGTGGGGGATCAGACACTA 59.584 55.000 11.15 4.46 34.42 2.74
176 177 1.009552 TGGTGGGGGATCAGACACTAT 59.990 52.381 11.15 0.00 34.42 2.12
177 178 2.127708 GGTGGGGGATCAGACACTATT 58.872 52.381 11.15 0.00 34.42 1.73
178 179 2.158755 GGTGGGGGATCAGACACTATTG 60.159 54.545 11.15 0.00 34.42 1.90
179 180 2.771943 GTGGGGGATCAGACACTATTGA 59.228 50.000 0.00 0.00 0.00 2.57
180 181 3.199946 GTGGGGGATCAGACACTATTGAA 59.800 47.826 0.00 0.00 0.00 2.69
181 182 3.199946 TGGGGGATCAGACACTATTGAAC 59.800 47.826 0.00 0.00 0.00 3.18
182 183 3.433740 GGGGGATCAGACACTATTGAACC 60.434 52.174 0.00 0.00 36.01 3.62
183 184 3.199946 GGGGATCAGACACTATTGAACCA 59.800 47.826 0.00 0.00 37.83 3.67
184 185 4.324254 GGGGATCAGACACTATTGAACCAA 60.324 45.833 0.00 0.00 37.83 3.67
185 186 5.253330 GGGATCAGACACTATTGAACCAAA 58.747 41.667 0.00 0.00 37.83 3.28
186 187 5.710099 GGGATCAGACACTATTGAACCAAAA 59.290 40.000 0.00 0.00 37.83 2.44
187 188 6.378280 GGGATCAGACACTATTGAACCAAAAT 59.622 38.462 0.00 0.00 37.83 1.82
188 189 7.415653 GGGATCAGACACTATTGAACCAAAATC 60.416 40.741 0.00 0.00 37.83 2.17
189 190 7.121168 GGATCAGACACTATTGAACCAAAATCA 59.879 37.037 0.00 0.00 36.56 2.57
190 191 7.815840 TCAGACACTATTGAACCAAAATCAA 57.184 32.000 0.00 0.00 40.76 2.57
191 192 8.408043 TCAGACACTATTGAACCAAAATCAAT 57.592 30.769 6.93 6.93 46.37 2.57
192 193 8.298854 TCAGACACTATTGAACCAAAATCAATG 58.701 33.333 11.02 5.14 44.83 2.82
193 194 8.298854 CAGACACTATTGAACCAAAATCAATGA 58.701 33.333 11.02 0.00 44.83 2.57
194 195 8.299570 AGACACTATTGAACCAAAATCAATGAC 58.700 33.333 11.02 0.00 44.83 3.06
195 196 7.378181 ACACTATTGAACCAAAATCAATGACC 58.622 34.615 11.02 0.00 44.83 4.02
196 197 6.527722 CACTATTGAACCAAAATCAATGACCG 59.472 38.462 11.02 1.89 44.83 4.79
197 198 5.720371 ATTGAACCAAAATCAATGACCGA 57.280 34.783 1.26 0.00 43.85 4.69
198 199 4.497473 TGAACCAAAATCAATGACCGAC 57.503 40.909 0.00 0.00 0.00 4.79
199 200 4.141287 TGAACCAAAATCAATGACCGACT 58.859 39.130 0.00 0.00 0.00 4.18
200 201 5.309638 TGAACCAAAATCAATGACCGACTA 58.690 37.500 0.00 0.00 0.00 2.59
201 202 5.765677 TGAACCAAAATCAATGACCGACTAA 59.234 36.000 0.00 0.00 0.00 2.24
202 203 6.263392 TGAACCAAAATCAATGACCGACTAAA 59.737 34.615 0.00 0.00 0.00 1.85
203 204 6.642707 ACCAAAATCAATGACCGACTAAAA 57.357 33.333 0.00 0.00 0.00 1.52
204 205 7.045126 ACCAAAATCAATGACCGACTAAAAA 57.955 32.000 0.00 0.00 0.00 1.94
239 240 0.179018 CTGTTACCAGGGGCATAGGC 60.179 60.000 0.00 0.00 34.90 3.93
240 241 1.227853 GTTACCAGGGGCATAGGCG 60.228 63.158 0.00 0.00 42.47 5.52
241 242 2.448582 TTACCAGGGGCATAGGCGG 61.449 63.158 0.00 0.00 42.47 6.13
244 245 2.847234 CAGGGGCATAGGCGGGTA 60.847 66.667 0.00 0.00 42.47 3.69
245 246 2.040254 AGGGGCATAGGCGGGTAA 60.040 61.111 0.00 0.00 42.47 2.85
246 247 1.694882 AGGGGCATAGGCGGGTAAA 60.695 57.895 0.00 0.00 42.47 2.01
247 248 1.065997 AGGGGCATAGGCGGGTAAAT 61.066 55.000 0.00 0.00 42.47 1.40
248 249 0.178973 GGGGCATAGGCGGGTAAATT 60.179 55.000 0.00 0.00 42.47 1.82
249 250 1.074244 GGGGCATAGGCGGGTAAATTA 59.926 52.381 0.00 0.00 42.47 1.40
250 251 2.291346 GGGGCATAGGCGGGTAAATTAT 60.291 50.000 0.00 0.00 42.47 1.28
251 252 2.752903 GGGCATAGGCGGGTAAATTATG 59.247 50.000 0.00 0.00 42.47 1.90
252 253 3.418047 GGCATAGGCGGGTAAATTATGT 58.582 45.455 0.00 0.00 42.47 2.29
253 254 3.190535 GGCATAGGCGGGTAAATTATGTG 59.809 47.826 0.00 0.00 42.47 3.21
254 255 4.069304 GCATAGGCGGGTAAATTATGTGA 58.931 43.478 0.00 0.00 0.00 3.58
255 256 4.517453 GCATAGGCGGGTAAATTATGTGAA 59.483 41.667 0.00 0.00 0.00 3.18
256 257 5.562113 GCATAGGCGGGTAAATTATGTGAAC 60.562 44.000 0.00 0.00 0.00 3.18
257 258 4.230745 AGGCGGGTAAATTATGTGAACT 57.769 40.909 0.00 0.00 0.00 3.01
258 259 4.196971 AGGCGGGTAAATTATGTGAACTC 58.803 43.478 0.00 0.00 0.00 3.01
259 260 4.080526 AGGCGGGTAAATTATGTGAACTCT 60.081 41.667 0.00 0.00 0.00 3.24
260 261 5.129815 AGGCGGGTAAATTATGTGAACTCTA 59.870 40.000 0.00 0.00 0.00 2.43
261 262 5.465724 GGCGGGTAAATTATGTGAACTCTAG 59.534 44.000 0.00 0.00 0.00 2.43
262 263 5.465724 GCGGGTAAATTATGTGAACTCTAGG 59.534 44.000 0.00 0.00 0.00 3.02
263 264 5.989777 CGGGTAAATTATGTGAACTCTAGGG 59.010 44.000 0.00 0.00 0.00 3.53
264 265 6.296803 GGGTAAATTATGTGAACTCTAGGGG 58.703 44.000 0.00 0.00 0.00 4.79
265 266 5.763698 GGTAAATTATGTGAACTCTAGGGGC 59.236 44.000 0.00 0.00 0.00 5.80
266 267 5.450818 AAATTATGTGAACTCTAGGGGCA 57.549 39.130 0.00 0.00 0.00 5.36
267 268 5.450818 AATTATGTGAACTCTAGGGGCAA 57.549 39.130 0.00 0.00 0.00 4.52
268 269 4.919774 TTATGTGAACTCTAGGGGCAAA 57.080 40.909 0.00 0.00 0.00 3.68
269 270 5.450818 TTATGTGAACTCTAGGGGCAAAT 57.549 39.130 0.00 0.00 0.00 2.32
270 271 3.806949 TGTGAACTCTAGGGGCAAATT 57.193 42.857 0.00 0.00 0.00 1.82
271 272 3.686016 TGTGAACTCTAGGGGCAAATTC 58.314 45.455 0.00 0.00 0.00 2.17
272 273 3.017442 GTGAACTCTAGGGGCAAATTCC 58.983 50.000 0.00 0.00 0.00 3.01
273 274 2.289565 GAACTCTAGGGGCAAATTCCG 58.710 52.381 0.00 0.00 0.00 4.30
274 275 1.286248 ACTCTAGGGGCAAATTCCGT 58.714 50.000 0.00 0.00 0.00 4.69
275 276 1.065418 ACTCTAGGGGCAAATTCCGTG 60.065 52.381 0.00 0.00 0.00 4.94
276 277 1.209504 CTCTAGGGGCAAATTCCGTGA 59.790 52.381 0.00 0.00 0.00 4.35
277 278 1.065709 TCTAGGGGCAAATTCCGTGAC 60.066 52.381 0.00 0.00 0.00 3.67
278 279 0.391927 TAGGGGCAAATTCCGTGACG 60.392 55.000 0.00 0.00 0.00 4.35
279 280 1.969589 GGGGCAAATTCCGTGACGT 60.970 57.895 3.64 0.00 0.00 4.34
280 281 0.674269 GGGGCAAATTCCGTGACGTA 60.674 55.000 3.64 0.00 0.00 3.57
281 282 0.445043 GGGCAAATTCCGTGACGTAC 59.555 55.000 3.64 0.00 0.00 3.67
292 293 1.412387 GTGACGTACGACCAGAAACC 58.588 55.000 24.41 3.59 0.00 3.27
293 294 0.314935 TGACGTACGACCAGAAACCC 59.685 55.000 24.41 0.00 0.00 4.11
294 295 0.314935 GACGTACGACCAGAAACCCA 59.685 55.000 24.41 0.00 0.00 4.51
295 296 0.032540 ACGTACGACCAGAAACCCAC 59.967 55.000 24.41 0.00 0.00 4.61
296 297 0.316204 CGTACGACCAGAAACCCACT 59.684 55.000 10.44 0.00 0.00 4.00
297 298 1.269936 CGTACGACCAGAAACCCACTT 60.270 52.381 10.44 0.00 0.00 3.16
298 299 2.804212 CGTACGACCAGAAACCCACTTT 60.804 50.000 10.44 0.00 0.00 2.66
299 300 2.430248 ACGACCAGAAACCCACTTTT 57.570 45.000 0.00 0.00 0.00 2.27
300 301 2.294979 ACGACCAGAAACCCACTTTTC 58.705 47.619 0.00 0.00 35.97 2.29
301 302 2.092592 ACGACCAGAAACCCACTTTTCT 60.093 45.455 0.00 0.00 44.98 2.52
302 303 2.949644 CGACCAGAAACCCACTTTTCTT 59.050 45.455 0.00 0.00 42.09 2.52
303 304 3.380320 CGACCAGAAACCCACTTTTCTTT 59.620 43.478 0.00 0.00 42.09 2.52
304 305 4.577283 CGACCAGAAACCCACTTTTCTTTA 59.423 41.667 0.00 0.00 42.09 1.85
305 306 5.240844 CGACCAGAAACCCACTTTTCTTTAT 59.759 40.000 0.00 0.00 42.09 1.40
306 307 6.238925 CGACCAGAAACCCACTTTTCTTTATT 60.239 38.462 0.00 0.00 42.09 1.40
307 308 7.040961 CGACCAGAAACCCACTTTTCTTTATTA 60.041 37.037 0.00 0.00 42.09 0.98
308 309 8.721133 ACCAGAAACCCACTTTTCTTTATTAT 57.279 30.769 0.00 0.00 42.09 1.28
309 310 9.154632 ACCAGAAACCCACTTTTCTTTATTATT 57.845 29.630 0.00 0.00 42.09 1.40
315 316 9.816787 AACCCACTTTTCTTTATTATTAGGTGA 57.183 29.630 0.00 0.00 0.00 4.02
316 317 9.816787 ACCCACTTTTCTTTATTATTAGGTGAA 57.183 29.630 0.00 0.00 0.00 3.18
358 359 2.331194 ACGATTGTTCTACGGGTTTCG 58.669 47.619 0.00 0.00 45.88 3.46
359 360 1.657094 CGATTGTTCTACGGGTTTCGG 59.343 52.381 0.00 0.00 44.45 4.30
360 361 2.691927 GATTGTTCTACGGGTTTCGGT 58.308 47.619 0.00 0.00 44.45 4.69
361 362 2.618442 TTGTTCTACGGGTTTCGGTT 57.382 45.000 0.00 0.00 44.45 4.44
362 363 3.742433 TTGTTCTACGGGTTTCGGTTA 57.258 42.857 0.00 0.00 44.45 2.85
363 364 3.959535 TGTTCTACGGGTTTCGGTTAT 57.040 42.857 0.00 0.00 44.45 1.89
364 365 4.270245 TGTTCTACGGGTTTCGGTTATT 57.730 40.909 0.00 0.00 44.45 1.40
517 518 6.977502 CCATTTCTCAGTACTCATGACTAGTG 59.022 42.308 0.00 9.69 0.00 2.74
518 519 5.568685 TTCTCAGTACTCATGACTAGTGC 57.431 43.478 0.00 3.68 0.00 4.40
546 547 4.690184 TTCAAACGAGATACACTAGCGA 57.310 40.909 0.00 0.00 0.00 4.93
553 554 3.975670 CGAGATACACTAGCGATTTGTCC 59.024 47.826 0.00 0.00 0.00 4.02
682 752 2.414785 GGGCCGCACATGGGTTAAG 61.415 63.158 0.00 0.00 0.00 1.85
683 753 1.377987 GGCCGCACATGGGTTAAGA 60.378 57.895 0.00 0.00 0.00 2.10
684 754 1.376609 GGCCGCACATGGGTTAAGAG 61.377 60.000 0.00 0.00 0.00 2.85
713 783 2.668550 GTTGCCCACCCTGACGTC 60.669 66.667 9.11 9.11 0.00 4.34
714 784 4.308458 TTGCCCACCCTGACGTCG 62.308 66.667 11.62 5.76 0.00 5.12
839 947 3.021695 TCGTCCCTTCCGCTATATATGG 58.978 50.000 0.00 0.00 0.00 2.74
842 950 1.141053 CCCTTCCGCTATATATGGGGC 59.859 57.143 7.53 3.08 37.43 5.80
910 1024 2.289631 CCAAAGCCAAAATCCCAACCTC 60.290 50.000 0.00 0.00 0.00 3.85
911 1025 1.644509 AAGCCAAAATCCCAACCTCC 58.355 50.000 0.00 0.00 0.00 4.30
912 1026 0.611896 AGCCAAAATCCCAACCTCCG 60.612 55.000 0.00 0.00 0.00 4.63
913 1027 0.898326 GCCAAAATCCCAACCTCCGT 60.898 55.000 0.00 0.00 0.00 4.69
914 1028 1.173913 CCAAAATCCCAACCTCCGTC 58.826 55.000 0.00 0.00 0.00 4.79
915 1029 1.173913 CAAAATCCCAACCTCCGTCC 58.826 55.000 0.00 0.00 0.00 4.79
916 1030 1.073098 AAAATCCCAACCTCCGTCCT 58.927 50.000 0.00 0.00 0.00 3.85
917 1031 0.618981 AAATCCCAACCTCCGTCCTC 59.381 55.000 0.00 0.00 0.00 3.71
918 1032 1.272554 AATCCCAACCTCCGTCCTCC 61.273 60.000 0.00 0.00 0.00 4.30
919 1033 3.771160 CCCAACCTCCGTCCTCCG 61.771 72.222 0.00 0.00 0.00 4.63
920 1034 2.678934 CCAACCTCCGTCCTCCGA 60.679 66.667 0.00 0.00 39.56 4.55
921 1035 2.058595 CCAACCTCCGTCCTCCGAT 61.059 63.158 0.00 0.00 39.56 4.18
1201 1346 2.119655 ACCGTCTACAGCTAGCCGG 61.120 63.158 21.49 21.49 45.34 6.13
1202 1347 2.026301 CGTCTACAGCTAGCCGGC 59.974 66.667 21.89 21.89 0.00 6.13
1258 1405 3.244353 CCATCCTTCCATCAACTAGCGAT 60.244 47.826 0.00 0.00 0.00 4.58
1263 1410 4.202161 CCTTCCATCAACTAGCGATGTACT 60.202 45.833 17.20 0.00 38.90 2.73
1264 1411 5.009710 CCTTCCATCAACTAGCGATGTACTA 59.990 44.000 17.20 2.81 38.90 1.82
1271 1419 3.021695 ACTAGCGATGTACTACCAAGCA 58.978 45.455 0.00 0.00 0.00 3.91
1276 1424 3.002348 GCGATGTACTACCAAGCAAATCC 59.998 47.826 0.00 0.00 0.00 3.01
1277 1425 4.188462 CGATGTACTACCAAGCAAATCCA 58.812 43.478 0.00 0.00 0.00 3.41
1291 1439 3.607078 GCAAATCCATTAATCCGCTCGAC 60.607 47.826 0.00 0.00 0.00 4.20
1299 1447 2.743636 AATCCGCTCGACTTCTTTGA 57.256 45.000 0.00 0.00 0.00 2.69
1303 1451 1.661112 CCGCTCGACTTCTTTGATTCC 59.339 52.381 0.00 0.00 0.00 3.01
1315 1470 1.523154 TTGATTCCTGTTGGCCGTGC 61.523 55.000 0.00 0.00 0.00 5.34
1358 1517 5.551233 TGCTAGCCTGGATAATGTAATGTC 58.449 41.667 13.29 0.00 0.00 3.06
1362 1521 5.945310 AGCCTGGATAATGTAATGTCATGT 58.055 37.500 0.00 0.00 0.00 3.21
1367 1526 8.509690 CCTGGATAATGTAATGTCATGTTGATC 58.490 37.037 0.00 0.00 0.00 2.92
1372 1531 6.932356 ATGTAATGTCATGTTGATCCTGTC 57.068 37.500 0.00 0.00 0.00 3.51
1386 1545 7.232737 TGTTGATCCTGTCTTAGTTCTTCTACA 59.767 37.037 0.00 0.00 0.00 2.74
1387 1546 7.397892 TGATCCTGTCTTAGTTCTTCTACAG 57.602 40.000 0.00 0.00 32.85 2.74
1388 1547 6.948886 TGATCCTGTCTTAGTTCTTCTACAGT 59.051 38.462 0.00 0.00 31.78 3.55
1435 1707 5.763088 GCTAAATCTAGCTAATTTGGTGGC 58.237 41.667 17.15 13.38 46.12 5.01
1473 1745 1.881973 GATGCAAAACTGGCACTCTGA 59.118 47.619 0.00 0.00 45.23 3.27
1476 1748 1.610522 GCAAAACTGGCACTCTGATGT 59.389 47.619 0.00 0.00 0.00 3.06
1478 1750 3.365364 GCAAAACTGGCACTCTGATGTAC 60.365 47.826 0.00 0.00 0.00 2.90
1479 1751 2.770164 AACTGGCACTCTGATGTACC 57.230 50.000 0.00 0.00 0.00 3.34
1544 1833 1.809207 CTTTAATGCACCGGCCTGG 59.191 57.895 0.00 11.48 46.41 4.45
1545 1834 2.283472 CTTTAATGCACCGGCCTGGC 62.283 60.000 11.05 11.05 43.94 4.85
1546 1835 4.813235 TAATGCACCGGCCTGGCC 62.813 66.667 28.17 28.17 46.75 5.36
1601 1903 6.671614 TTAAGATGGCAATTAACGTACTGG 57.328 37.500 0.00 0.00 0.00 4.00
1620 1935 0.394352 GTGGGACCATCATGGACACC 60.394 60.000 11.90 9.79 40.96 4.16
1678 2004 2.441822 GATCCCCCAAGCCTCGATCG 62.442 65.000 9.36 9.36 0.00 3.69
1698 2024 2.983136 CGCTATAGTGATGCACAGTAGC 59.017 50.000 7.57 17.02 41.54 3.58
1905 4124 2.918230 AATCCCCACGATTCGACGGC 62.918 60.000 13.95 0.00 36.38 5.68
1998 6960 1.453928 GCACTAGGGCATTGGGTCC 60.454 63.158 13.43 0.00 43.70 4.46
2012 6974 1.069513 TGGGTCCGATATTAGTTGCCG 59.930 52.381 0.00 0.00 0.00 5.69
2013 6975 1.342174 GGGTCCGATATTAGTTGCCGA 59.658 52.381 0.00 0.00 0.00 5.54
2014 6976 2.224113 GGGTCCGATATTAGTTGCCGAA 60.224 50.000 0.00 0.00 0.00 4.30
2015 6977 3.460103 GGTCCGATATTAGTTGCCGAAA 58.540 45.455 0.00 0.00 0.00 3.46
2016 6978 3.872771 GGTCCGATATTAGTTGCCGAAAA 59.127 43.478 0.00 0.00 0.00 2.29
2017 6979 4.514066 GGTCCGATATTAGTTGCCGAAAAT 59.486 41.667 0.00 0.00 0.00 1.82
2019 6981 5.235616 GTCCGATATTAGTTGCCGAAAATGA 59.764 40.000 0.00 0.00 0.00 2.57
2020 6982 5.818336 TCCGATATTAGTTGCCGAAAATGAA 59.182 36.000 0.00 0.00 0.00 2.57
2021 6983 6.316640 TCCGATATTAGTTGCCGAAAATGAAA 59.683 34.615 0.00 0.00 0.00 2.69
2022 6984 6.970043 CCGATATTAGTTGCCGAAAATGAAAA 59.030 34.615 0.00 0.00 0.00 2.29
2023 6985 7.647715 CCGATATTAGTTGCCGAAAATGAAAAT 59.352 33.333 0.00 0.00 0.00 1.82
2024 6986 8.682016 CGATATTAGTTGCCGAAAATGAAAATC 58.318 33.333 0.00 0.00 0.00 2.17
2025 6987 6.869421 ATTAGTTGCCGAAAATGAAAATCG 57.131 33.333 0.00 0.00 36.39 3.34
2034 6996 6.165659 CGAAAATGAAAATCGGTAGAGTGT 57.834 37.500 0.00 0.00 33.15 3.55
2097 7062 2.480555 CACCAAGATGCGTTCGGC 59.519 61.111 0.00 0.00 43.96 5.54
2180 7145 4.082787 CCGCATTTAGTTTGTGTCCAATCT 60.083 41.667 0.00 0.00 35.38 2.40
2182 7147 5.562696 CGCATTTAGTTTGTGTCCAATCTGT 60.563 40.000 0.00 0.00 33.66 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.688735 TCTAGACAGATGCCCGATTGG 59.311 52.381 0.00 0.00 37.09 3.16
19 20 2.625314 TCTCTAGACAGATGCCCGATTG 59.375 50.000 0.00 0.00 0.00 2.67
20 21 2.950781 TCTCTAGACAGATGCCCGATT 58.049 47.619 0.00 0.00 0.00 3.34
21 22 2.666272 TCTCTAGACAGATGCCCGAT 57.334 50.000 0.00 0.00 0.00 4.18
22 23 2.437085 TTCTCTAGACAGATGCCCGA 57.563 50.000 0.00 0.00 0.00 5.14
23 24 3.452474 CTTTTCTCTAGACAGATGCCCG 58.548 50.000 0.00 0.00 0.00 6.13
24 25 3.432890 CCCTTTTCTCTAGACAGATGCCC 60.433 52.174 0.00 0.00 0.00 5.36
25 26 3.432890 CCCCTTTTCTCTAGACAGATGCC 60.433 52.174 0.00 0.00 0.00 4.40
26 27 3.432890 CCCCCTTTTCTCTAGACAGATGC 60.433 52.174 0.00 0.00 0.00 3.91
27 28 4.033709 TCCCCCTTTTCTCTAGACAGATG 58.966 47.826 0.00 0.00 0.00 2.90
28 29 4.294347 CTCCCCCTTTTCTCTAGACAGAT 58.706 47.826 0.00 0.00 0.00 2.90
29 30 3.714144 CTCCCCCTTTTCTCTAGACAGA 58.286 50.000 0.00 0.00 0.00 3.41
30 31 2.169561 GCTCCCCCTTTTCTCTAGACAG 59.830 54.545 0.00 0.00 0.00 3.51
31 32 2.188817 GCTCCCCCTTTTCTCTAGACA 58.811 52.381 0.00 0.00 0.00 3.41
32 33 2.188817 TGCTCCCCCTTTTCTCTAGAC 58.811 52.381 0.00 0.00 0.00 2.59
33 34 2.642171 TGCTCCCCCTTTTCTCTAGA 57.358 50.000 0.00 0.00 0.00 2.43
34 35 3.721087 TTTGCTCCCCCTTTTCTCTAG 57.279 47.619 0.00 0.00 0.00 2.43
35 36 4.407365 CTTTTTGCTCCCCCTTTTCTCTA 58.593 43.478 0.00 0.00 0.00 2.43
36 37 3.234353 CTTTTTGCTCCCCCTTTTCTCT 58.766 45.455 0.00 0.00 0.00 3.10
37 38 2.300152 CCTTTTTGCTCCCCCTTTTCTC 59.700 50.000 0.00 0.00 0.00 2.87
38 39 2.329267 CCTTTTTGCTCCCCCTTTTCT 58.671 47.619 0.00 0.00 0.00 2.52
39 40 1.347707 CCCTTTTTGCTCCCCCTTTTC 59.652 52.381 0.00 0.00 0.00 2.29
40 41 1.061735 TCCCTTTTTGCTCCCCCTTTT 60.062 47.619 0.00 0.00 0.00 2.27
41 42 0.565674 TCCCTTTTTGCTCCCCCTTT 59.434 50.000 0.00 0.00 0.00 3.11
42 43 0.115152 CTCCCTTTTTGCTCCCCCTT 59.885 55.000 0.00 0.00 0.00 3.95
43 44 1.074296 ACTCCCTTTTTGCTCCCCCT 61.074 55.000 0.00 0.00 0.00 4.79
44 45 0.702316 TACTCCCTTTTTGCTCCCCC 59.298 55.000 0.00 0.00 0.00 5.40
45 46 2.597578 TTACTCCCTTTTTGCTCCCC 57.402 50.000 0.00 0.00 0.00 4.81
46 47 5.104485 TCTCTATTACTCCCTTTTTGCTCCC 60.104 44.000 0.00 0.00 0.00 4.30
47 48 5.990668 TCTCTATTACTCCCTTTTTGCTCC 58.009 41.667 0.00 0.00 0.00 4.70
48 49 7.923414 TTTCTCTATTACTCCCTTTTTGCTC 57.077 36.000 0.00 0.00 0.00 4.26
49 50 8.706322 TTTTTCTCTATTACTCCCTTTTTGCT 57.294 30.769 0.00 0.00 0.00 3.91
50 51 8.029522 CCTTTTTCTCTATTACTCCCTTTTTGC 58.970 37.037 0.00 0.00 0.00 3.68
51 52 8.523658 CCCTTTTTCTCTATTACTCCCTTTTTG 58.476 37.037 0.00 0.00 0.00 2.44
52 53 7.674348 CCCCTTTTTCTCTATTACTCCCTTTTT 59.326 37.037 0.00 0.00 0.00 1.94
53 54 7.019254 TCCCCTTTTTCTCTATTACTCCCTTTT 59.981 37.037 0.00 0.00 0.00 2.27
54 55 6.507843 TCCCCTTTTTCTCTATTACTCCCTTT 59.492 38.462 0.00 0.00 0.00 3.11
55 56 6.036631 TCCCCTTTTTCTCTATTACTCCCTT 58.963 40.000 0.00 0.00 0.00 3.95
56 57 5.610791 TCCCCTTTTTCTCTATTACTCCCT 58.389 41.667 0.00 0.00 0.00 4.20
57 58 5.666265 TCTCCCCTTTTTCTCTATTACTCCC 59.334 44.000 0.00 0.00 0.00 4.30
58 59 6.809976 TCTCCCCTTTTTCTCTATTACTCC 57.190 41.667 0.00 0.00 0.00 3.85
59 60 7.220740 CCATCTCCCCTTTTTCTCTATTACTC 58.779 42.308 0.00 0.00 0.00 2.59
60 61 6.101881 CCCATCTCCCCTTTTTCTCTATTACT 59.898 42.308 0.00 0.00 0.00 2.24
61 62 6.299922 CCCATCTCCCCTTTTTCTCTATTAC 58.700 44.000 0.00 0.00 0.00 1.89
62 63 5.372661 CCCCATCTCCCCTTTTTCTCTATTA 59.627 44.000 0.00 0.00 0.00 0.98
63 64 4.168871 CCCCATCTCCCCTTTTTCTCTATT 59.831 45.833 0.00 0.00 0.00 1.73
64 65 3.724209 CCCCATCTCCCCTTTTTCTCTAT 59.276 47.826 0.00 0.00 0.00 1.98
65 66 3.123273 CCCCATCTCCCCTTTTTCTCTA 58.877 50.000 0.00 0.00 0.00 2.43
66 67 1.925959 CCCCATCTCCCCTTTTTCTCT 59.074 52.381 0.00 0.00 0.00 3.10
67 68 1.063642 CCCCCATCTCCCCTTTTTCTC 60.064 57.143 0.00 0.00 0.00 2.87
68 69 1.010795 CCCCCATCTCCCCTTTTTCT 58.989 55.000 0.00 0.00 0.00 2.52
69 70 1.007607 TCCCCCATCTCCCCTTTTTC 58.992 55.000 0.00 0.00 0.00 2.29
70 71 1.575788 GATCCCCCATCTCCCCTTTTT 59.424 52.381 0.00 0.00 0.00 1.94
71 72 1.235756 GATCCCCCATCTCCCCTTTT 58.764 55.000 0.00 0.00 0.00 2.27
72 73 0.047802 TGATCCCCCATCTCCCCTTT 59.952 55.000 0.00 0.00 31.92 3.11
73 74 0.047802 TTGATCCCCCATCTCCCCTT 59.952 55.000 0.00 0.00 31.92 3.95
74 75 0.047802 TTTGATCCCCCATCTCCCCT 59.952 55.000 0.00 0.00 31.92 4.79
75 76 0.186143 GTTTGATCCCCCATCTCCCC 59.814 60.000 0.00 0.00 31.92 4.81
76 77 0.186143 GGTTTGATCCCCCATCTCCC 59.814 60.000 0.00 0.00 31.92 4.30
77 78 1.133668 CAGGTTTGATCCCCCATCTCC 60.134 57.143 0.00 0.00 31.92 3.71
78 79 1.133668 CCAGGTTTGATCCCCCATCTC 60.134 57.143 0.00 0.00 31.92 2.75
79 80 0.929244 CCAGGTTTGATCCCCCATCT 59.071 55.000 0.00 0.00 31.92 2.90
80 81 0.106015 CCCAGGTTTGATCCCCCATC 60.106 60.000 0.00 0.00 0.00 3.51
81 82 0.855400 ACCCAGGTTTGATCCCCCAT 60.855 55.000 0.00 0.00 0.00 4.00
82 83 1.467190 ACCCAGGTTTGATCCCCCA 60.467 57.895 0.00 0.00 0.00 4.96
83 84 1.214992 AGACCCAGGTTTGATCCCCC 61.215 60.000 0.00 0.00 0.00 5.40
84 85 0.704664 AAGACCCAGGTTTGATCCCC 59.295 55.000 0.00 0.00 0.00 4.81
85 86 3.953542 ATAAGACCCAGGTTTGATCCC 57.046 47.619 0.00 0.00 0.00 3.85
86 87 4.412528 ACCTATAAGACCCAGGTTTGATCC 59.587 45.833 0.00 0.00 39.73 3.36
87 88 5.368989 CACCTATAAGACCCAGGTTTGATC 58.631 45.833 0.00 0.00 40.77 2.92
88 89 4.166144 CCACCTATAAGACCCAGGTTTGAT 59.834 45.833 0.00 0.00 40.77 2.57
89 90 3.521937 CCACCTATAAGACCCAGGTTTGA 59.478 47.826 0.00 0.00 40.77 2.69
90 91 3.521937 TCCACCTATAAGACCCAGGTTTG 59.478 47.826 0.00 0.00 40.77 2.93
91 92 3.810623 TCCACCTATAAGACCCAGGTTT 58.189 45.455 0.00 0.00 40.77 3.27
92 93 3.502051 TCCACCTATAAGACCCAGGTT 57.498 47.619 0.00 0.00 40.77 3.50
93 94 3.013648 TCTTCCACCTATAAGACCCAGGT 59.986 47.826 0.00 0.00 43.56 4.00
94 95 3.643792 CTCTTCCACCTATAAGACCCAGG 59.356 52.174 0.00 0.00 35.45 4.45
95 96 4.547671 TCTCTTCCACCTATAAGACCCAG 58.452 47.826 0.00 0.00 0.00 4.45
96 97 4.232122 TCTCTCTTCCACCTATAAGACCCA 59.768 45.833 0.00 0.00 0.00 4.51
97 98 4.805744 TCTCTCTTCCACCTATAAGACCC 58.194 47.826 0.00 0.00 0.00 4.46
98 99 5.697067 TCTCTCTCTTCCACCTATAAGACC 58.303 45.833 0.00 0.00 0.00 3.85
99 100 6.362248 ACTCTCTCTCTTCCACCTATAAGAC 58.638 44.000 0.00 0.00 0.00 3.01
100 101 6.409925 GGACTCTCTCTCTTCCACCTATAAGA 60.410 46.154 0.00 0.00 0.00 2.10
101 102 5.768164 GGACTCTCTCTCTTCCACCTATAAG 59.232 48.000 0.00 0.00 0.00 1.73
102 103 5.193930 TGGACTCTCTCTCTTCCACCTATAA 59.806 44.000 0.00 0.00 33.02 0.98
103 104 4.727332 TGGACTCTCTCTCTTCCACCTATA 59.273 45.833 0.00 0.00 33.02 1.31
104 105 3.529734 TGGACTCTCTCTCTTCCACCTAT 59.470 47.826 0.00 0.00 33.02 2.57
105 106 2.920271 TGGACTCTCTCTCTTCCACCTA 59.080 50.000 0.00 0.00 33.02 3.08
106 107 1.713647 TGGACTCTCTCTCTTCCACCT 59.286 52.381 0.00 0.00 33.02 4.00
107 108 2.099405 CTGGACTCTCTCTCTTCCACC 58.901 57.143 0.00 0.00 34.36 4.61
108 109 1.476488 GCTGGACTCTCTCTCTTCCAC 59.524 57.143 0.00 0.00 34.36 4.02
109 110 1.618345 GGCTGGACTCTCTCTCTTCCA 60.618 57.143 0.00 0.00 36.67 3.53
110 111 1.111277 GGCTGGACTCTCTCTCTTCC 58.889 60.000 0.00 0.00 0.00 3.46
111 112 1.750778 CTGGCTGGACTCTCTCTCTTC 59.249 57.143 0.00 0.00 0.00 2.87
112 113 1.077005 ACTGGCTGGACTCTCTCTCTT 59.923 52.381 0.00 0.00 0.00 2.85
113 114 0.704076 ACTGGCTGGACTCTCTCTCT 59.296 55.000 0.00 0.00 0.00 3.10
114 115 2.297701 CTACTGGCTGGACTCTCTCTC 58.702 57.143 0.00 0.00 0.00 3.20
115 116 1.064017 CCTACTGGCTGGACTCTCTCT 60.064 57.143 0.00 0.00 0.00 3.10
116 117 1.398692 CCTACTGGCTGGACTCTCTC 58.601 60.000 0.00 0.00 0.00 3.20
117 118 0.032615 CCCTACTGGCTGGACTCTCT 60.033 60.000 0.00 0.00 0.00 3.10
118 119 2.510664 CCCTACTGGCTGGACTCTC 58.489 63.158 0.00 0.00 0.00 3.20
119 120 4.796408 CCCTACTGGCTGGACTCT 57.204 61.111 0.00 0.00 0.00 3.24
145 146 2.684655 CCCACCAAATGCCAGGGG 60.685 66.667 0.00 0.00 35.83 4.79
146 147 2.684655 CCCCACCAAATGCCAGGG 60.685 66.667 0.00 0.00 39.29 4.45
147 148 2.534594 ATCCCCCACCAAATGCCAGG 62.535 60.000 0.00 0.00 0.00 4.45
148 149 1.002017 ATCCCCCACCAAATGCCAG 59.998 57.895 0.00 0.00 0.00 4.85
149 150 1.001503 GATCCCCCACCAAATGCCA 59.998 57.895 0.00 0.00 0.00 4.92
150 151 1.001503 TGATCCCCCACCAAATGCC 59.998 57.895 0.00 0.00 0.00 4.40
151 152 0.033208 TCTGATCCCCCACCAAATGC 60.033 55.000 0.00 0.00 0.00 3.56
152 153 1.005805 TGTCTGATCCCCCACCAAATG 59.994 52.381 0.00 0.00 0.00 2.32
153 154 1.005924 GTGTCTGATCCCCCACCAAAT 59.994 52.381 0.00 0.00 0.00 2.32
154 155 0.404040 GTGTCTGATCCCCCACCAAA 59.596 55.000 0.00 0.00 0.00 3.28
155 156 0.475632 AGTGTCTGATCCCCCACCAA 60.476 55.000 0.00 0.00 0.00 3.67
156 157 0.415830 TAGTGTCTGATCCCCCACCA 59.584 55.000 0.00 0.00 0.00 4.17
157 158 1.807814 ATAGTGTCTGATCCCCCACC 58.192 55.000 0.00 0.00 0.00 4.61
158 159 2.771943 TCAATAGTGTCTGATCCCCCAC 59.228 50.000 0.00 0.00 0.00 4.61
159 160 3.129262 TCAATAGTGTCTGATCCCCCA 57.871 47.619 0.00 0.00 0.00 4.96
160 161 3.433740 GGTTCAATAGTGTCTGATCCCCC 60.434 52.174 0.00 0.00 0.00 5.40
161 162 3.199946 TGGTTCAATAGTGTCTGATCCCC 59.800 47.826 0.00 0.00 32.57 4.81
162 163 4.487714 TGGTTCAATAGTGTCTGATCCC 57.512 45.455 0.00 0.00 32.57 3.85
163 164 6.817765 TTTTGGTTCAATAGTGTCTGATCC 57.182 37.500 0.00 0.00 33.67 3.36
164 165 8.044060 TGATTTTGGTTCAATAGTGTCTGATC 57.956 34.615 0.00 0.00 0.00 2.92
165 166 8.408043 TTGATTTTGGTTCAATAGTGTCTGAT 57.592 30.769 0.00 0.00 0.00 2.90
166 167 7.815840 TTGATTTTGGTTCAATAGTGTCTGA 57.184 32.000 0.00 0.00 0.00 3.27
167 168 8.298854 TCATTGATTTTGGTTCAATAGTGTCTG 58.701 33.333 0.00 0.00 40.84 3.51
168 169 8.299570 GTCATTGATTTTGGTTCAATAGTGTCT 58.700 33.333 0.00 0.00 40.84 3.41
169 170 7.542130 GGTCATTGATTTTGGTTCAATAGTGTC 59.458 37.037 0.00 0.00 40.84 3.67
170 171 7.378181 GGTCATTGATTTTGGTTCAATAGTGT 58.622 34.615 0.00 0.00 40.84 3.55
171 172 6.527722 CGGTCATTGATTTTGGTTCAATAGTG 59.472 38.462 0.00 0.00 40.84 2.74
172 173 6.432783 TCGGTCATTGATTTTGGTTCAATAGT 59.567 34.615 0.00 0.00 40.84 2.12
173 174 6.747280 GTCGGTCATTGATTTTGGTTCAATAG 59.253 38.462 0.00 0.00 40.84 1.73
174 175 6.432783 AGTCGGTCATTGATTTTGGTTCAATA 59.567 34.615 0.00 0.00 40.84 1.90
175 176 5.243730 AGTCGGTCATTGATTTTGGTTCAAT 59.756 36.000 0.00 0.00 42.95 2.57
176 177 4.582656 AGTCGGTCATTGATTTTGGTTCAA 59.417 37.500 0.00 0.00 37.49 2.69
177 178 4.141287 AGTCGGTCATTGATTTTGGTTCA 58.859 39.130 0.00 0.00 0.00 3.18
178 179 4.766404 AGTCGGTCATTGATTTTGGTTC 57.234 40.909 0.00 0.00 0.00 3.62
179 180 6.642707 TTTAGTCGGTCATTGATTTTGGTT 57.357 33.333 0.00 0.00 0.00 3.67
180 181 6.642707 TTTTAGTCGGTCATTGATTTTGGT 57.357 33.333 0.00 0.00 0.00 3.67
222 223 1.227853 CGCCTATGCCCCTGGTAAC 60.228 63.158 0.00 0.00 0.00 2.50
223 224 2.448582 CCGCCTATGCCCCTGGTAA 61.449 63.158 0.00 0.00 0.00 2.85
224 225 2.847234 CCGCCTATGCCCCTGGTA 60.847 66.667 0.00 0.00 0.00 3.25
227 228 1.990160 TTTACCCGCCTATGCCCCTG 61.990 60.000 0.00 0.00 0.00 4.45
228 229 1.065997 ATTTACCCGCCTATGCCCCT 61.066 55.000 0.00 0.00 0.00 4.79
229 230 0.178973 AATTTACCCGCCTATGCCCC 60.179 55.000 0.00 0.00 0.00 5.80
230 231 2.572209 TAATTTACCCGCCTATGCCC 57.428 50.000 0.00 0.00 0.00 5.36
231 232 3.190535 CACATAATTTACCCGCCTATGCC 59.809 47.826 0.00 0.00 0.00 4.40
232 233 4.069304 TCACATAATTTACCCGCCTATGC 58.931 43.478 0.00 0.00 0.00 3.14
233 234 5.763204 AGTTCACATAATTTACCCGCCTATG 59.237 40.000 0.00 0.00 0.00 2.23
234 235 5.937111 AGTTCACATAATTTACCCGCCTAT 58.063 37.500 0.00 0.00 0.00 2.57
235 236 5.129815 AGAGTTCACATAATTTACCCGCCTA 59.870 40.000 0.00 0.00 0.00 3.93
236 237 4.080526 AGAGTTCACATAATTTACCCGCCT 60.081 41.667 0.00 0.00 0.00 5.52
237 238 4.196971 AGAGTTCACATAATTTACCCGCC 58.803 43.478 0.00 0.00 0.00 6.13
238 239 5.465724 CCTAGAGTTCACATAATTTACCCGC 59.534 44.000 0.00 0.00 0.00 6.13
239 240 5.989777 CCCTAGAGTTCACATAATTTACCCG 59.010 44.000 0.00 0.00 0.00 5.28
240 241 6.296803 CCCCTAGAGTTCACATAATTTACCC 58.703 44.000 0.00 0.00 0.00 3.69
241 242 5.763698 GCCCCTAGAGTTCACATAATTTACC 59.236 44.000 0.00 0.00 0.00 2.85
242 243 6.354130 TGCCCCTAGAGTTCACATAATTTAC 58.646 40.000 0.00 0.00 0.00 2.01
243 244 6.569127 TGCCCCTAGAGTTCACATAATTTA 57.431 37.500 0.00 0.00 0.00 1.40
244 245 5.450818 TGCCCCTAGAGTTCACATAATTT 57.549 39.130 0.00 0.00 0.00 1.82
245 246 5.450818 TTGCCCCTAGAGTTCACATAATT 57.549 39.130 0.00 0.00 0.00 1.40
246 247 5.450818 TTTGCCCCTAGAGTTCACATAAT 57.549 39.130 0.00 0.00 0.00 1.28
247 248 4.919774 TTTGCCCCTAGAGTTCACATAA 57.080 40.909 0.00 0.00 0.00 1.90
248 249 5.437060 GAATTTGCCCCTAGAGTTCACATA 58.563 41.667 0.00 0.00 0.00 2.29
249 250 4.273318 GAATTTGCCCCTAGAGTTCACAT 58.727 43.478 0.00 0.00 0.00 3.21
250 251 3.561313 GGAATTTGCCCCTAGAGTTCACA 60.561 47.826 0.00 0.00 0.00 3.58
251 252 3.017442 GGAATTTGCCCCTAGAGTTCAC 58.983 50.000 0.00 0.00 0.00 3.18
252 253 2.355716 CGGAATTTGCCCCTAGAGTTCA 60.356 50.000 0.00 0.00 0.00 3.18
253 254 2.289565 CGGAATTTGCCCCTAGAGTTC 58.710 52.381 0.00 0.00 0.00 3.01
254 255 1.633945 ACGGAATTTGCCCCTAGAGTT 59.366 47.619 0.00 0.00 0.00 3.01
255 256 1.065418 CACGGAATTTGCCCCTAGAGT 60.065 52.381 0.00 0.00 0.00 3.24
256 257 1.209504 TCACGGAATTTGCCCCTAGAG 59.790 52.381 0.00 0.00 0.00 2.43
257 258 1.065709 GTCACGGAATTTGCCCCTAGA 60.066 52.381 0.00 0.00 0.00 2.43
258 259 1.379527 GTCACGGAATTTGCCCCTAG 58.620 55.000 0.00 0.00 0.00 3.02
259 260 0.391927 CGTCACGGAATTTGCCCCTA 60.392 55.000 0.00 0.00 0.00 3.53
260 261 1.674322 CGTCACGGAATTTGCCCCT 60.674 57.895 0.00 0.00 0.00 4.79
261 262 0.674269 TACGTCACGGAATTTGCCCC 60.674 55.000 0.35 0.00 0.00 5.80
262 263 0.445043 GTACGTCACGGAATTTGCCC 59.555 55.000 0.35 0.00 0.00 5.36
263 264 3.961570 GTACGTCACGGAATTTGCC 57.038 52.632 0.35 0.00 0.00 4.52
273 274 1.412387 GGTTTCTGGTCGTACGTCAC 58.588 55.000 16.05 6.87 0.00 3.67
274 275 0.314935 GGGTTTCTGGTCGTACGTCA 59.685 55.000 16.05 13.58 0.00 4.35
275 276 0.314935 TGGGTTTCTGGTCGTACGTC 59.685 55.000 16.05 9.80 0.00 4.34
276 277 0.032540 GTGGGTTTCTGGTCGTACGT 59.967 55.000 16.05 0.00 0.00 3.57
277 278 0.316204 AGTGGGTTTCTGGTCGTACG 59.684 55.000 9.53 9.53 0.00 3.67
278 279 2.538512 AAGTGGGTTTCTGGTCGTAC 57.461 50.000 0.00 0.00 0.00 3.67
279 280 3.135167 AGAAAAGTGGGTTTCTGGTCGTA 59.865 43.478 0.00 0.00 44.35 3.43
280 281 2.092592 AGAAAAGTGGGTTTCTGGTCGT 60.093 45.455 0.00 0.00 44.35 4.34
281 282 2.572290 AGAAAAGTGGGTTTCTGGTCG 58.428 47.619 0.00 0.00 44.35 4.79
282 283 6.650427 ATAAAGAAAAGTGGGTTTCTGGTC 57.350 37.500 1.19 0.00 45.09 4.02
283 284 8.721133 ATAATAAAGAAAAGTGGGTTTCTGGT 57.279 30.769 1.19 0.00 45.09 4.00
289 290 9.816787 TCACCTAATAATAAAGAAAAGTGGGTT 57.183 29.630 0.00 0.00 0.00 4.11
290 291 9.816787 TTCACCTAATAATAAAGAAAAGTGGGT 57.183 29.630 0.00 0.00 0.00 4.51
321 322 8.997621 AACAATCGTTCTGCGGTATATATATT 57.002 30.769 0.00 0.00 41.72 1.28
322 323 8.630278 GAACAATCGTTCTGCGGTATATATAT 57.370 34.615 0.00 0.00 46.72 0.86
324 325 6.946229 GAACAATCGTTCTGCGGTATATAT 57.054 37.500 0.00 0.00 46.72 0.86
336 337 6.178886 CCGAAACCCGTAGAACAATCGTTC 62.179 50.000 0.00 0.00 43.35 3.95
337 338 2.733026 CGAAACCCGTAGAACAATCGTT 59.267 45.455 0.00 0.00 38.33 3.85
338 339 2.331194 CGAAACCCGTAGAACAATCGT 58.669 47.619 0.00 0.00 0.00 3.73
339 340 1.657094 CCGAAACCCGTAGAACAATCG 59.343 52.381 0.00 0.00 36.31 3.34
340 341 2.691927 ACCGAAACCCGTAGAACAATC 58.308 47.619 0.00 0.00 36.31 2.67
341 342 2.845363 ACCGAAACCCGTAGAACAAT 57.155 45.000 0.00 0.00 36.31 2.71
342 343 2.618442 AACCGAAACCCGTAGAACAA 57.382 45.000 0.00 0.00 36.31 2.83
343 344 3.959535 ATAACCGAAACCCGTAGAACA 57.040 42.857 0.00 0.00 36.31 3.18
344 345 5.611796 AAAATAACCGAAACCCGTAGAAC 57.388 39.130 0.00 0.00 36.31 3.01
452 453 4.437239 CAGGCACCAGTAGTTCAAGATAG 58.563 47.826 0.00 0.00 0.00 2.08
485 486 7.884877 TCATGAGTACTGAGAAATGGACAAAAT 59.115 33.333 0.00 0.00 0.00 1.82
517 518 9.638300 CTAGTGTATCTCGTTTGAAAATAATGC 57.362 33.333 0.00 0.00 0.00 3.56
518 519 9.638300 GCTAGTGTATCTCGTTTGAAAATAATG 57.362 33.333 0.00 0.00 0.00 1.90
546 547 9.341078 AGCACTGATTTAAATTTTTGGACAAAT 57.659 25.926 1.43 0.00 0.00 2.32
553 554 7.450627 GCTAGCAGCACTGATTTAAATTTTTG 58.549 34.615 10.63 1.44 41.89 2.44
610 661 3.208747 GCAGCTGCTAAATAACCCCTA 57.791 47.619 31.33 0.00 38.21 3.53
611 662 2.058593 GCAGCTGCTAAATAACCCCT 57.941 50.000 31.33 0.00 38.21 4.79
657 727 4.101448 ATGTGCGGCCCTCCAGTC 62.101 66.667 0.00 0.00 0.00 3.51
678 748 4.090588 CCACGGGCGGCCTCTTAA 62.091 66.667 27.04 0.00 0.00 1.85
713 783 1.500396 GGTTTTTACCTGCTCGCCG 59.500 57.895 0.00 0.00 0.00 6.46
714 784 0.891904 TGGGTTTTTACCTGCTCGCC 60.892 55.000 0.00 0.00 0.00 5.54
825 902 1.209621 GGGCCCCATATATAGCGGAA 58.790 55.000 12.23 0.00 0.00 4.30
910 1024 4.541648 AGGGGGATCGGAGGACGG 62.542 72.222 0.00 0.00 44.45 4.79
911 1025 2.913060 GAGGGGGATCGGAGGACG 60.913 72.222 0.00 0.00 46.11 4.79
912 1026 1.075151 AAGAGGGGGATCGGAGGAC 60.075 63.158 0.00 0.00 0.00 3.85
913 1027 1.233369 GAAGAGGGGGATCGGAGGA 59.767 63.158 0.00 0.00 0.00 3.71
914 1028 0.399233 AAGAAGAGGGGGATCGGAGG 60.399 60.000 0.00 0.00 0.00 4.30
915 1029 1.044611 GAAGAAGAGGGGGATCGGAG 58.955 60.000 0.00 0.00 0.00 4.63
916 1030 0.398664 GGAAGAAGAGGGGGATCGGA 60.399 60.000 0.00 0.00 0.00 4.55
917 1031 0.399233 AGGAAGAAGAGGGGGATCGG 60.399 60.000 0.00 0.00 0.00 4.18
918 1032 1.044611 GAGGAAGAAGAGGGGGATCG 58.955 60.000 0.00 0.00 0.00 3.69
919 1033 1.061735 AGGAGGAAGAAGAGGGGGATC 60.062 57.143 0.00 0.00 0.00 3.36
920 1034 1.031112 AGGAGGAAGAAGAGGGGGAT 58.969 55.000 0.00 0.00 0.00 3.85
921 1035 0.800239 AAGGAGGAAGAAGAGGGGGA 59.200 55.000 0.00 0.00 0.00 4.81
983 1128 1.448540 ATCTTCACTGCTTCGCCCG 60.449 57.895 0.00 0.00 0.00 6.13
993 1138 1.137872 GTCCCGCAGATCATCTTCACT 59.862 52.381 0.00 0.00 0.00 3.41
1225 1372 1.271054 GGAAGGATGGATGGATCGGTG 60.271 57.143 0.00 0.00 0.00 4.94
1258 1405 7.284489 GGATTAATGGATTTGCTTGGTAGTACA 59.716 37.037 2.06 0.00 0.00 2.90
1263 1410 4.037446 GCGGATTAATGGATTTGCTTGGTA 59.963 41.667 0.00 0.00 0.00 3.25
1264 1411 3.181476 GCGGATTAATGGATTTGCTTGGT 60.181 43.478 0.00 0.00 0.00 3.67
1271 1419 4.073293 AGTCGAGCGGATTAATGGATTT 57.927 40.909 0.00 0.00 0.00 2.17
1276 1424 4.566759 TCAAAGAAGTCGAGCGGATTAATG 59.433 41.667 0.00 0.00 0.00 1.90
1277 1425 4.755411 TCAAAGAAGTCGAGCGGATTAAT 58.245 39.130 0.00 0.00 0.00 1.40
1291 1439 2.095059 CGGCCAACAGGAATCAAAGAAG 60.095 50.000 2.24 0.00 0.00 2.85
1299 1447 0.037590 TAAGCACGGCCAACAGGAAT 59.962 50.000 2.24 0.00 0.00 3.01
1303 1451 2.860293 CGTAAGCACGGCCAACAG 59.140 61.111 2.24 0.00 44.59 3.16
1315 1470 3.549221 GCAAGCTACTCTAGAGCCGTAAG 60.549 52.174 19.97 10.28 41.06 2.34
1346 1505 8.985315 ACAGGATCAACATGACATTACATTAT 57.015 30.769 0.00 0.00 34.19 1.28
1358 1517 7.102346 AGAAGAACTAAGACAGGATCAACATG 58.898 38.462 0.00 0.00 36.29 3.21
1362 1521 7.451877 ACTGTAGAAGAACTAAGACAGGATCAA 59.548 37.037 4.98 0.00 37.16 2.57
1367 1526 6.334102 ACACTGTAGAAGAACTAAGACAGG 57.666 41.667 4.98 0.00 37.16 4.00
1372 1531 8.030106 CCCTAGAAACACTGTAGAAGAACTAAG 58.970 40.741 0.00 0.00 32.49 2.18
1435 1707 4.505217 GCTTCACGTGATGCGCGG 62.505 66.667 32.30 14.81 46.11 6.46
1454 1726 1.985473 TCAGAGTGCCAGTTTTGCAT 58.015 45.000 0.00 0.00 41.46 3.96
1473 1745 5.129485 AGCTTACTGCAAGATACTGGTACAT 59.871 40.000 0.00 0.00 45.94 2.29
1476 1748 4.956700 AGAGCTTACTGCAAGATACTGGTA 59.043 41.667 0.00 0.00 45.94 3.25
1478 1750 4.099266 AGAGAGCTTACTGCAAGATACTGG 59.901 45.833 0.00 0.00 45.94 4.00
1479 1751 5.042593 CAGAGAGCTTACTGCAAGATACTG 58.957 45.833 7.88 0.00 45.94 2.74
1544 1833 4.976116 GCATTACGAATTTCCAATACTGGC 59.024 41.667 0.00 0.00 43.17 4.85
1560 1849 4.270084 TCTTAATGAAGGAAGCGCATTACG 59.730 41.667 11.47 0.84 35.07 3.18
1601 1903 0.394352 GGTGTCCATGATGGTCCCAC 60.394 60.000 11.87 15.27 39.03 4.61
1620 1935 4.730613 GCCAATGTACTTTTGCGTATCTGG 60.731 45.833 2.40 0.00 0.00 3.86
1678 2004 3.982475 TGCTACTGTGCATCACTATAGC 58.018 45.455 17.90 17.90 42.78 2.97
1698 2024 0.671472 TGACAGAGATTGCGTGGCTG 60.671 55.000 0.00 0.00 0.00 4.85
1801 2162 4.353437 GCTGCTGTGGCTTGTGGC 62.353 66.667 0.00 0.00 39.59 5.01
1883 4102 1.326548 CGTCGAATCGTGGGGATTTTC 59.673 52.381 1.52 0.00 45.33 2.29
1930 4149 2.751837 GGGTGGCTAAGGTGCAGC 60.752 66.667 8.11 8.11 38.35 5.25
1931 4150 2.436646 CGGGTGGCTAAGGTGCAG 60.437 66.667 0.00 0.00 34.04 4.41
1944 6906 2.203437 GGTTCAGTTTGGCCGGGT 60.203 61.111 2.18 0.00 0.00 5.28
1954 6916 2.251642 GCTCGTTTGCGGGTTCAGT 61.252 57.895 0.00 0.00 41.45 3.41
1976 6938 2.475466 CCAATGCCCTAGTGCGCAG 61.475 63.158 12.22 0.00 38.64 5.18
1977 6939 2.438254 CCAATGCCCTAGTGCGCA 60.438 61.111 5.66 5.66 39.79 6.09
1998 6960 7.962934 TTTTCATTTTCGGCAACTAATATCG 57.037 32.000 0.00 0.00 0.00 2.92
2012 6974 6.128634 ACGACACTCTACCGATTTTCATTTTC 60.129 38.462 0.00 0.00 0.00 2.29
2013 6975 5.699458 ACGACACTCTACCGATTTTCATTTT 59.301 36.000 0.00 0.00 0.00 1.82
2014 6976 5.235516 ACGACACTCTACCGATTTTCATTT 58.764 37.500 0.00 0.00 0.00 2.32
2015 6977 4.817517 ACGACACTCTACCGATTTTCATT 58.182 39.130 0.00 0.00 0.00 2.57
2016 6978 4.158025 AGACGACACTCTACCGATTTTCAT 59.842 41.667 0.00 0.00 0.00 2.57
2017 6979 3.504906 AGACGACACTCTACCGATTTTCA 59.495 43.478 0.00 0.00 0.00 2.69
2019 6981 3.834610 CAGACGACACTCTACCGATTTT 58.165 45.455 0.00 0.00 0.00 1.82
2020 6982 2.415625 GCAGACGACACTCTACCGATTT 60.416 50.000 0.00 0.00 0.00 2.17
2021 6983 1.132643 GCAGACGACACTCTACCGATT 59.867 52.381 0.00 0.00 0.00 3.34
2022 6984 0.733729 GCAGACGACACTCTACCGAT 59.266 55.000 0.00 0.00 0.00 4.18
2023 6985 1.303799 GGCAGACGACACTCTACCGA 61.304 60.000 0.00 0.00 0.00 4.69
2024 6986 1.136984 GGCAGACGACACTCTACCG 59.863 63.158 0.00 0.00 0.00 4.02
2097 7062 7.328737 CCTTTGGAGGATAATCGTAGTTAATCG 59.671 40.741 0.00 0.00 46.74 3.34
2127 7092 1.154150 GCTTGCACGCACAATCCTC 60.154 57.895 10.77 0.00 0.00 3.71
2131 7096 1.080366 CATGGCTTGCACGCACAAT 60.080 52.632 17.72 4.57 0.00 2.71
2168 7133 2.076100 GCGATCACAGATTGGACACAA 58.924 47.619 0.00 0.00 41.59 3.33
2180 7145 2.434185 GGCGAACTGGCGATCACA 60.434 61.111 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.