Multiple sequence alignment - TraesCS2B01G453400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G453400 chr2B 100.000 8411 0 0 1 8411 647108397 647116807 0.000000e+00 15533.0
1 TraesCS2B01G453400 chr2B 84.934 531 67 12 7752 8278 106922569 106922048 7.480000e-145 525.0
2 TraesCS2B01G453400 chr2B 84.971 519 67 8 7752 8263 41866805 41866291 4.500000e-142 516.0
3 TraesCS2B01G453400 chr2B 83.772 456 65 8 7824 8276 243074017 243074466 2.810000e-114 424.0
4 TraesCS2B01G453400 chr2B 98.276 58 1 0 5180 5237 707985171 707985114 1.490000e-17 102.0
5 TraesCS2B01G453400 chr2A 91.683 5014 254 62 1 4954 685036146 685041056 0.000000e+00 6798.0
6 TraesCS2B01G453400 chr2A 90.484 1923 113 18 5863 7745 685041952 685043844 0.000000e+00 2473.0
7 TraesCS2B01G453400 chr2A 95.066 608 28 2 5243 5848 685041360 685041967 0.000000e+00 955.0
8 TraesCS2B01G453400 chr2A 85.795 528 54 17 7752 8263 759328231 759328753 2.670000e-149 540.0
9 TraesCS2B01G453400 chr2A 92.829 251 16 2 4931 5181 685041065 685041313 6.210000e-96 363.0
10 TraesCS2B01G453400 chr2A 90.071 141 12 1 8271 8411 73940066 73940204 1.860000e-41 182.0
11 TraesCS2B01G453400 chr2A 95.652 46 2 0 2581 2626 658908540 658908585 3.260000e-09 75.0
12 TraesCS2B01G453400 chr2D 96.230 3422 79 24 2800 6217 542187848 542191223 0.000000e+00 5559.0
13 TraesCS2B01G453400 chr2D 93.028 1549 47 20 6217 7745 542191250 542192757 0.000000e+00 2206.0
14 TraesCS2B01G453400 chr2D 93.681 1361 59 9 1 1336 542149617 542150975 0.000000e+00 2012.0
15 TraesCS2B01G453400 chr2D 89.760 1123 70 25 1717 2804 542186589 542187701 0.000000e+00 1395.0
16 TraesCS2B01G453400 chr2D 89.474 95 5 2 1503 1595 542186398 542186489 1.920000e-21 115.0
17 TraesCS2B01G453400 chr7D 86.832 524 52 10 7752 8263 488607053 488607571 3.410000e-158 569.0
18 TraesCS2B01G453400 chr7D 94.340 53 1 2 2582 2634 69827147 69827097 7.000000e-11 80.5
19 TraesCS2B01G453400 chr7D 95.455 44 2 0 2583 2626 234073713 234073756 4.210000e-08 71.3
20 TraesCS2B01G453400 chr6A 86.807 523 54 11 7752 8263 559749791 559750309 3.410000e-158 569.0
21 TraesCS2B01G453400 chr6A 97.674 43 1 0 2582 2624 509282199 509282157 3.260000e-09 75.0
22 TraesCS2B01G453400 chr6A 91.837 49 3 1 2581 2629 615747570 615747523 5.450000e-07 67.6
23 TraesCS2B01G453400 chr5A 86.381 536 56 11 7752 8276 643560220 643560749 3.410000e-158 569.0
24 TraesCS2B01G453400 chr5A 85.714 539 57 15 7752 8276 601230923 601230391 1.230000e-152 551.0
25 TraesCS2B01G453400 chr5A 90.780 141 11 1 8271 8411 432059932 432059794 4.010000e-43 187.0
26 TraesCS2B01G453400 chr5A 93.750 64 4 0 5174 5237 664553034 664552971 6.950000e-16 97.1
27 TraesCS2B01G453400 chr5A 88.608 79 7 1 5158 5236 161915042 161914966 2.500000e-15 95.3
28 TraesCS2B01G453400 chr5A 93.617 47 3 0 2581 2627 577931163 577931209 4.210000e-08 71.3
29 TraesCS2B01G453400 chr5B 86.616 523 55 8 7752 8263 671865847 671866365 1.580000e-156 564.0
30 TraesCS2B01G453400 chr5B 98.276 58 0 1 5180 5237 698584990 698585046 5.370000e-17 100.0
31 TraesCS2B01G453400 chr7A 85.661 537 61 10 7752 8276 619645027 619644495 1.230000e-152 551.0
32 TraesCS2B01G453400 chr7A 78.421 190 37 4 4993 5180 40358825 40359012 4.120000e-23 121.0
33 TraesCS2B01G453400 chr7A 97.727 44 1 0 2582 2625 185591611 185591568 9.050000e-10 76.8
34 TraesCS2B01G453400 chr3A 85.150 532 62 11 7756 8276 638998276 638997751 5.780000e-146 529.0
35 TraesCS2B01G453400 chr3A 90.210 143 9 3 8268 8409 514665643 514665781 1.860000e-41 182.0
36 TraesCS2B01G453400 chr6D 84.916 537 62 15 7752 8276 273943508 273942979 7.480000e-145 525.0
37 TraesCS2B01G453400 chr6D 96.491 57 2 0 5181 5237 419274043 419274099 2.500000e-15 95.3
38 TraesCS2B01G453400 chr6D 100.000 28 0 0 2599 2626 8804363 8804336 1.500000e-02 52.8
39 TraesCS2B01G453400 chr3D 86.824 425 37 13 7752 8163 55170639 55171057 2.770000e-124 457.0
40 TraesCS2B01G453400 chr3D 90.278 144 11 2 8268 8411 165705546 165705686 1.440000e-42 185.0
41 TraesCS2B01G453400 chr3D 90.071 141 11 1 8271 8411 583856535 583856672 6.710000e-41 180.0
42 TraesCS2B01G453400 chr3D 89.362 141 13 1 8271 8411 357045428 357045290 8.680000e-40 176.0
43 TraesCS2B01G453400 chr3D 96.610 59 2 0 5179 5237 138890661 138890603 1.930000e-16 99.0
44 TraesCS2B01G453400 chr3D 96.667 60 1 1 5178 5237 536588297 536588239 1.930000e-16 99.0
45 TraesCS2B01G453400 chr3D 95.556 45 2 0 2582 2626 382751660 382751616 1.170000e-08 73.1
46 TraesCS2B01G453400 chrUn 82.407 540 61 19 7752 8276 68073802 68073282 2.790000e-119 440.0
47 TraesCS2B01G453400 chrUn 96.667 60 1 1 5178 5237 348740509 348740567 1.930000e-16 99.0
48 TraesCS2B01G453400 chrUn 96.667 60 1 1 5178 5237 364369461 364369519 1.930000e-16 99.0
49 TraesCS2B01G453400 chrUn 96.667 60 1 1 5178 5237 374196426 374196368 1.930000e-16 99.0
50 TraesCS2B01G453400 chrUn 96.667 60 1 1 5178 5237 374198284 374198226 1.930000e-16 99.0
51 TraesCS2B01G453400 chrUn 96.667 60 1 1 5178 5237 374285587 374285529 1.930000e-16 99.0
52 TraesCS2B01G453400 chrUn 96.491 57 1 1 5181 5237 277315447 277315502 8.990000e-15 93.5
53 TraesCS2B01G453400 chrUn 98.113 53 1 0 5185 5237 310883104 310883052 8.990000e-15 93.5
54 TraesCS2B01G453400 chrUn 94.828 58 3 0 5181 5238 37328494 37328437 3.230000e-14 91.6
55 TraesCS2B01G453400 chrUn 94.737 57 3 0 5181 5237 478179820 478179764 1.160000e-13 89.8
56 TraesCS2B01G453400 chrUn 93.478 46 3 0 2582 2627 104889281 104889326 1.510000e-07 69.4
57 TraesCS2B01G453400 chr4D 85.032 314 31 12 7961 8263 71013440 71013748 1.060000e-78 305.0
58 TraesCS2B01G453400 chr4D 93.548 62 2 2 5178 5237 460994502 460994441 3.230000e-14 91.6
59 TraesCS2B01G453400 chr5D 90.580 138 11 1 8274 8411 357212281 357212146 1.860000e-41 182.0
60 TraesCS2B01G453400 chr5D 95.161 62 2 1 5177 5237 225256185 225256246 6.950000e-16 97.1
61 TraesCS2B01G453400 chr5D 96.491 57 2 0 5181 5237 69904617 69904673 2.500000e-15 95.3
62 TraesCS2B01G453400 chr5D 88.750 80 5 3 5158 5237 176095708 176095783 2.500000e-15 95.3
63 TraesCS2B01G453400 chr5D 95.652 46 2 0 2582 2627 340758379 340758424 3.260000e-09 75.0
64 TraesCS2B01G453400 chr5D 97.561 41 1 0 2582 2622 281224496 281224536 4.210000e-08 71.3
65 TraesCS2B01G453400 chr5D 93.617 47 3 0 2581 2627 458870299 458870345 4.210000e-08 71.3
66 TraesCS2B01G453400 chr5D 91.489 47 4 0 2581 2627 458874245 458874291 1.960000e-06 65.8
67 TraesCS2B01G453400 chr5D 94.737 38 2 0 2585 2622 134153199 134153162 9.120000e-05 60.2
68 TraesCS2B01G453400 chr1B 90.000 140 12 1 8272 8411 2316214 2316077 6.710000e-41 180.0
69 TraesCS2B01G453400 chr1B 89.510 143 11 2 8270 8411 464153027 464153166 2.410000e-40 178.0
70 TraesCS2B01G453400 chr7B 96.721 61 1 1 5178 5237 252794457 252794397 5.370000e-17 100.0
71 TraesCS2B01G453400 chr7B 95.652 46 2 0 2582 2627 4091535 4091580 3.260000e-09 75.0
72 TraesCS2B01G453400 chr6B 96.667 60 2 0 5178 5237 27942392 27942451 5.370000e-17 100.0
73 TraesCS2B01G453400 chr1A 95.238 63 3 0 5175 5237 550884836 550884898 5.370000e-17 100.0
74 TraesCS2B01G453400 chr1A 96.610 59 1 1 5181 5238 520119524 520119582 6.950000e-16 97.1
75 TraesCS2B01G453400 chr1A 92.537 67 3 2 5172 5237 363424700 363424765 2.500000e-15 95.3
76 TraesCS2B01G453400 chr1D 96.552 58 1 1 5179 5236 10263814 10263758 2.500000e-15 95.3
77 TraesCS2B01G453400 chr1D 93.443 61 4 0 5177 5237 60409604 60409664 3.230000e-14 91.6
78 TraesCS2B01G453400 chr1D 89.831 59 2 4 2583 2638 307349195 307349138 1.170000e-08 73.1
79 TraesCS2B01G453400 chr1D 93.333 45 3 0 2582 2626 347215351 347215395 5.450000e-07 67.6
80 TraesCS2B01G453400 chr4B 91.304 69 5 1 5169 5237 424174555 424174622 8.990000e-15 93.5
81 TraesCS2B01G453400 chr4B 90.278 72 5 2 5167 5237 487270804 487270874 8.990000e-15 93.5
82 TraesCS2B01G453400 chr4B 97.727 44 1 0 2579 2622 586332217 586332174 9.050000e-10 76.8
83 TraesCS2B01G453400 chr3B 90.541 74 2 5 5166 5237 374780186 374780256 8.990000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G453400 chr2B 647108397 647116807 8410 False 15533.00 15533 100.0000 1 8411 1 chr2B.!!$F2 8410
1 TraesCS2B01G453400 chr2B 106922048 106922569 521 True 525.00 525 84.9340 7752 8278 1 chr2B.!!$R2 526
2 TraesCS2B01G453400 chr2B 41866291 41866805 514 True 516.00 516 84.9710 7752 8263 1 chr2B.!!$R1 511
3 TraesCS2B01G453400 chr2A 685036146 685043844 7698 False 2647.25 6798 92.5155 1 7745 4 chr2A.!!$F4 7744
4 TraesCS2B01G453400 chr2A 759328231 759328753 522 False 540.00 540 85.7950 7752 8263 1 chr2A.!!$F3 511
5 TraesCS2B01G453400 chr2D 542186398 542192757 6359 False 2318.75 5559 92.1230 1503 7745 4 chr2D.!!$F2 6242
6 TraesCS2B01G453400 chr2D 542149617 542150975 1358 False 2012.00 2012 93.6810 1 1336 1 chr2D.!!$F1 1335
7 TraesCS2B01G453400 chr7D 488607053 488607571 518 False 569.00 569 86.8320 7752 8263 1 chr7D.!!$F2 511
8 TraesCS2B01G453400 chr6A 559749791 559750309 518 False 569.00 569 86.8070 7752 8263 1 chr6A.!!$F1 511
9 TraesCS2B01G453400 chr5A 643560220 643560749 529 False 569.00 569 86.3810 7752 8276 1 chr5A.!!$F2 524
10 TraesCS2B01G453400 chr5A 601230391 601230923 532 True 551.00 551 85.7140 7752 8276 1 chr5A.!!$R3 524
11 TraesCS2B01G453400 chr5B 671865847 671866365 518 False 564.00 564 86.6160 7752 8263 1 chr5B.!!$F1 511
12 TraesCS2B01G453400 chr7A 619644495 619645027 532 True 551.00 551 85.6610 7752 8276 1 chr7A.!!$R2 524
13 TraesCS2B01G453400 chr3A 638997751 638998276 525 True 529.00 529 85.1500 7756 8276 1 chr3A.!!$R1 520
14 TraesCS2B01G453400 chr6D 273942979 273943508 529 True 525.00 525 84.9160 7752 8276 1 chr6D.!!$R2 524
15 TraesCS2B01G453400 chrUn 68073282 68073802 520 True 440.00 440 82.4070 7752 8276 1 chrUn.!!$R2 524

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
820 824 0.108945 GAAGGAACAAGCATGGCAGC 60.109 55.000 0.0 0.0 0.00 5.25 F
1065 1074 0.039618 TTCCAGCCCCAGATCCAAAC 59.960 55.000 0.0 0.0 0.00 2.93 F
1757 1834 0.105964 TCAACCCACCGTGAGACAAG 59.894 55.000 0.0 0.0 0.00 3.16 F
1758 1835 0.105964 CAACCCACCGTGAGACAAGA 59.894 55.000 0.0 0.0 0.00 3.02 F
1761 1838 0.105964 CCCACCGTGAGACAAGACAA 59.894 55.000 0.0 0.0 0.00 3.18 F
1771 1848 1.000283 AGACAAGACAAGGAGCGACAG 60.000 52.381 0.0 0.0 0.00 3.51 F
1992 2075 1.087501 GGCTTCTTTCCATCCGTCAC 58.912 55.000 0.0 0.0 0.00 3.67 F
3402 3688 1.510480 GATGCCAGTGCCCTATTCGC 61.510 60.000 0.0 0.0 36.33 4.70 F
5000 5353 1.470051 TGCGTGCCACTGATAGACTA 58.530 50.000 0.0 0.0 0.00 2.59 F
6493 6907 0.250901 CCCACCACCCAACTCTTCAG 60.251 60.000 0.0 0.0 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1762 1839 0.248539 GACACGGATACTGTCGCTCC 60.249 60.000 0.00 0.00 35.86 4.70 R
1992 2075 0.334676 AGTGAGACAGAGAGAGGGGG 59.665 60.000 0.00 0.00 0.00 5.40 R
3402 3688 0.808125 ACTGCTCTCAGCTGACGTAG 59.192 55.000 13.74 16.98 44.10 3.51 R
3483 3769 5.874810 TCGATCTGGGAACATTTTTCTACTG 59.125 40.000 0.00 0.00 41.51 2.74 R
3930 4216 4.207841 GCAAGTTCTTTGATGTCTGTTTGC 59.792 41.667 0.00 0.00 39.21 3.68 R
4158 4444 5.001232 TCTCCTCGGTAAAATTCAAAGGTG 58.999 41.667 0.00 0.00 0.00 4.00 R
4174 4460 3.594134 AGACTGCTCATTTTTCTCCTCG 58.406 45.455 0.00 0.00 0.00 4.63 R
5219 5572 0.983378 CTACCCTTCCCCAGACCCTG 60.983 65.000 0.00 0.00 0.00 4.45 R
6721 7135 0.106708 GGCACTTATCGATGGCCTCA 59.893 55.000 18.92 0.00 41.39 3.86 R
8374 8855 0.109272 TCTACTTTCGCTGCACTCCG 60.109 55.000 0.00 0.00 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 7.428826 AGATTCAGTGGAGAAACAAATGAAAC 58.571 34.615 0.00 0.00 34.22 2.78
56 57 1.420891 ACCGCCTACAACCTTAAACCA 59.579 47.619 0.00 0.00 0.00 3.67
105 106 8.479689 TCGAAAGGAGGTATATGTTGAATGTTA 58.520 33.333 0.00 0.00 0.00 2.41
121 122 8.755018 GTTGAATGTTAACATTTGAAGGTTCAG 58.245 33.333 29.47 0.00 45.72 3.02
202 203 8.023128 CGTGATGTTTTATTTCAGTGAGGAAAT 58.977 33.333 6.41 6.41 46.31 2.17
304 305 2.263540 GGCCAGCGGTAGTTCGAA 59.736 61.111 0.00 0.00 0.00 3.71
433 434 6.966534 AACAGGTCAAGATGATGAAAAGTT 57.033 33.333 0.00 0.00 0.00 2.66
441 442 7.166473 GTCAAGATGATGAAAAGTTGAACACAC 59.834 37.037 0.00 0.00 0.00 3.82
809 813 0.249868 CAGACGCTGGTGAAGGAACA 60.250 55.000 0.00 0.00 0.00 3.18
820 824 0.108945 GAAGGAACAAGCATGGCAGC 60.109 55.000 0.00 0.00 0.00 5.25
821 825 1.538687 AAGGAACAAGCATGGCAGCC 61.539 55.000 3.66 3.66 34.23 4.85
842 846 4.615949 CCGAGAAGATAGAACAGATGGTG 58.384 47.826 0.00 0.00 0.00 4.17
854 858 1.420514 CAGATGGTGGATCCTCTGCAT 59.579 52.381 14.23 9.11 35.97 3.96
896 900 1.214589 GTCGCTTAGGGAAGACGCA 59.785 57.895 0.00 0.00 34.25 5.24
926 930 1.662044 CCCAGCCAAAGTTGAGCAC 59.338 57.895 7.09 0.00 0.00 4.40
1000 1009 1.228228 GGCTCTGCATCCAATCCCA 59.772 57.895 0.00 0.00 0.00 4.37
1065 1074 0.039618 TTCCAGCCCCAGATCCAAAC 59.960 55.000 0.00 0.00 0.00 2.93
1137 1154 5.466728 CGAGTTTCTGAAAGATTGGTGAGAA 59.533 40.000 2.48 0.00 46.36 2.87
1171 1188 1.481056 GGGCTCGGGGTAGCATGTAT 61.481 60.000 0.00 0.00 44.64 2.29
1186 1203 3.825308 CATGTATGCAGCACGTCTTTTT 58.175 40.909 0.00 0.00 0.00 1.94
1238 1255 5.186198 ACAGATGCTTGTAACTATCAACCC 58.814 41.667 0.00 0.00 0.00 4.11
1245 1262 3.433343 TGTAACTATCAACCCTGTCCGA 58.567 45.455 0.00 0.00 0.00 4.55
1247 1264 4.468510 TGTAACTATCAACCCTGTCCGAAT 59.531 41.667 0.00 0.00 0.00 3.34
1251 1268 2.691409 TCAACCCTGTCCGAATCATC 57.309 50.000 0.00 0.00 0.00 2.92
1269 1294 4.065088 TCATCGCCCTAATTATCTTGTGC 58.935 43.478 0.00 0.00 0.00 4.57
1270 1295 2.846193 TCGCCCTAATTATCTTGTGCC 58.154 47.619 0.00 0.00 0.00 5.01
1271 1296 2.438021 TCGCCCTAATTATCTTGTGCCT 59.562 45.455 0.00 0.00 0.00 4.75
1276 1301 4.823989 CCCTAATTATCTTGTGCCTTGAGG 59.176 45.833 0.00 0.00 38.53 3.86
1278 1303 5.762218 CCTAATTATCTTGTGCCTTGAGGAG 59.238 44.000 0.06 0.00 37.39 3.69
1324 1366 1.270550 GGACCAAACTGTGATGGCTTG 59.729 52.381 11.58 0.00 40.51 4.01
1339 1381 2.203195 TTGCAGCACTCGTTGGCT 60.203 55.556 0.00 0.00 42.06 4.75
1344 1386 1.823470 AGCACTCGTTGGCTTGCAA 60.823 52.632 0.00 0.00 36.92 4.08
1345 1387 1.065600 GCACTCGTTGGCTTGCAAA 59.934 52.632 0.00 0.00 34.97 3.68
1359 1401 0.466543 TGCAAAGTGTGTCCCGTAGT 59.533 50.000 0.00 0.00 0.00 2.73
1469 1511 1.355796 CGGCGGCGAATTACAGAACA 61.356 55.000 29.19 0.00 0.00 3.18
1474 1516 2.474526 CGGCGAATTACAGAACAGCTTG 60.475 50.000 0.00 0.00 0.00 4.01
1530 1572 2.202756 GCCTCGTGTAGCGGAAGG 60.203 66.667 0.00 0.00 41.72 3.46
1671 1739 1.522806 TGTCGGCAACACTGGACAC 60.523 57.895 0.00 0.00 34.71 3.67
1757 1834 0.105964 TCAACCCACCGTGAGACAAG 59.894 55.000 0.00 0.00 0.00 3.16
1758 1835 0.105964 CAACCCACCGTGAGACAAGA 59.894 55.000 0.00 0.00 0.00 3.02
1759 1836 0.106149 AACCCACCGTGAGACAAGAC 59.894 55.000 0.00 0.00 0.00 3.01
1760 1837 1.046472 ACCCACCGTGAGACAAGACA 61.046 55.000 0.00 0.00 0.00 3.41
1761 1838 0.105964 CCCACCGTGAGACAAGACAA 59.894 55.000 0.00 0.00 0.00 3.18
1762 1839 1.502231 CCACCGTGAGACAAGACAAG 58.498 55.000 0.00 0.00 0.00 3.16
1767 1844 1.423395 GTGAGACAAGACAAGGAGCG 58.577 55.000 0.00 0.00 0.00 5.03
1771 1848 1.000283 AGACAAGACAAGGAGCGACAG 60.000 52.381 0.00 0.00 0.00 3.51
1930 2009 2.150397 ATATTCGCGAGTAACTGGCC 57.850 50.000 15.58 0.00 31.58 5.36
1992 2075 1.087501 GGCTTCTTTCCATCCGTCAC 58.912 55.000 0.00 0.00 0.00 3.67
2080 2164 2.259917 CCAAAAATCCAGCCCCTTTCT 58.740 47.619 0.00 0.00 0.00 2.52
2082 2166 4.033009 CCAAAAATCCAGCCCCTTTCTAT 58.967 43.478 0.00 0.00 0.00 1.98
2144 2228 1.984570 CCTGCGAGAGGTCTTCCCA 60.985 63.158 0.00 0.00 37.02 4.37
2328 2421 5.425217 GGAGAATCTTCTTTTCTCTCCTCCT 59.575 44.000 11.85 0.00 45.86 3.69
2338 2431 1.909302 TCTCTCCTCCTCCGCATTTTT 59.091 47.619 0.00 0.00 0.00 1.94
2467 2579 5.619981 CGGGAGCATTTCAGTTTTTCTTAGG 60.620 44.000 0.00 0.00 0.00 2.69
2473 2585 5.656549 TTTCAGTTTTTCTTAGGGGGAGA 57.343 39.130 0.00 0.00 0.00 3.71
2474 2586 4.635699 TCAGTTTTTCTTAGGGGGAGAC 57.364 45.455 0.00 0.00 0.00 3.36
2507 2619 7.145323 CGGTTTAGGCCAATAAAGGATAATTG 58.855 38.462 5.01 0.00 33.72 2.32
2573 2690 3.451178 TGGAAGGAACATCAGTAGTAGGC 59.549 47.826 0.00 0.00 0.00 3.93
2579 2696 1.759445 ACATCAGTAGTAGGCCTGCAG 59.241 52.381 23.78 6.78 0.00 4.41
2580 2697 2.034878 CATCAGTAGTAGGCCTGCAGA 58.965 52.381 23.78 14.59 0.00 4.26
2582 2699 3.595190 TCAGTAGTAGGCCTGCAGATA 57.405 47.619 23.78 3.79 0.00 1.98
2583 2700 3.491342 TCAGTAGTAGGCCTGCAGATAG 58.509 50.000 23.78 8.62 0.00 2.08
2584 2701 3.117474 TCAGTAGTAGGCCTGCAGATAGT 60.117 47.826 23.78 6.86 0.00 2.12
2585 2702 3.005261 CAGTAGTAGGCCTGCAGATAGTG 59.995 52.174 23.78 14.92 0.00 2.74
2587 2704 2.969628 AGTAGGCCTGCAGATAGTGAT 58.030 47.619 23.78 0.00 0.00 3.06
2588 2705 2.896685 AGTAGGCCTGCAGATAGTGATC 59.103 50.000 23.78 0.00 0.00 2.92
2589 2706 2.100128 AGGCCTGCAGATAGTGATCT 57.900 50.000 17.39 0.00 43.63 2.75
2590 2707 3.251016 AGGCCTGCAGATAGTGATCTA 57.749 47.619 17.39 0.00 40.68 1.98
2593 2710 4.061596 GGCCTGCAGATAGTGATCTAAAC 58.938 47.826 17.39 0.00 40.68 2.01
2594 2711 3.738282 GCCTGCAGATAGTGATCTAAACG 59.262 47.826 17.39 0.00 40.68 3.60
2595 2712 4.499865 GCCTGCAGATAGTGATCTAAACGA 60.500 45.833 17.39 0.00 40.68 3.85
2596 2713 5.777802 CCTGCAGATAGTGATCTAAACGAT 58.222 41.667 17.39 0.00 40.68 3.73
2598 2715 6.703607 CCTGCAGATAGTGATCTAAACGATTT 59.296 38.462 17.39 0.00 40.68 2.17
2599 2716 7.225538 CCTGCAGATAGTGATCTAAACGATTTT 59.774 37.037 17.39 0.00 40.68 1.82
2600 2717 9.249457 CTGCAGATAGTGATCTAAACGATTTTA 57.751 33.333 8.42 0.00 40.68 1.52
2601 2718 9.764363 TGCAGATAGTGATCTAAACGATTTTAT 57.236 29.630 0.00 0.00 40.68 1.40
2668 2800 3.235200 AGTGACAGAAGTAGCAAGGAGT 58.765 45.455 0.00 0.00 0.00 3.85
2693 2825 4.855531 ACAACCAAGTAAAATGTCGAAGC 58.144 39.130 0.00 0.00 0.00 3.86
2812 3095 2.697229 TGTCAACCAATGCCAAACATGA 59.303 40.909 0.00 0.00 39.60 3.07
2821 3104 5.289193 CCAATGCCAAACATGATTTACTTCG 59.711 40.000 0.00 0.00 39.60 3.79
2876 3159 4.553330 ACGTGAACCACCTCAAATATCT 57.447 40.909 0.00 0.00 0.00 1.98
2925 3208 5.469373 AACATATGTGCAACTGTACATCG 57.531 39.130 15.44 11.21 45.97 3.84
2940 3223 8.240883 ACTGTACATCGAGATAAAGAAAACAC 57.759 34.615 0.00 0.00 0.00 3.32
3103 3387 3.605461 GCGAACCTACCGAAACAGTTTTC 60.605 47.826 0.00 0.00 38.23 2.29
3135 3419 4.333649 AGATGTTGATTATGCAGAACACGG 59.666 41.667 0.00 0.00 31.41 4.94
3136 3420 3.669536 TGTTGATTATGCAGAACACGGA 58.330 40.909 0.00 0.00 0.00 4.69
3138 3422 2.627945 TGATTATGCAGAACACGGACC 58.372 47.619 0.00 0.00 0.00 4.46
3140 3424 2.093306 TTATGCAGAACACGGACCTG 57.907 50.000 0.00 0.00 0.00 4.00
3155 3439 4.081087 ACGGACCTGCTGATTGTAAGTAAT 60.081 41.667 0.00 0.00 0.00 1.89
3234 3520 8.822855 CATTACGTGGAAATACTTGTAGCAATA 58.177 33.333 0.00 0.00 0.00 1.90
3235 3521 8.774890 TTACGTGGAAATACTTGTAGCAATAA 57.225 30.769 0.00 0.00 0.00 1.40
3236 3522 7.675962 ACGTGGAAATACTTGTAGCAATAAA 57.324 32.000 0.00 0.00 0.00 1.40
3237 3523 8.101654 ACGTGGAAATACTTGTAGCAATAAAA 57.898 30.769 0.00 0.00 0.00 1.52
3238 3524 8.569641 ACGTGGAAATACTTGTAGCAATAAAAA 58.430 29.630 0.00 0.00 0.00 1.94
3402 3688 1.510480 GATGCCAGTGCCCTATTCGC 61.510 60.000 0.00 0.00 36.33 4.70
3483 3769 3.751698 GGACCATTCCAGAGTAACAACAC 59.248 47.826 0.00 0.00 42.30 3.32
3930 4216 4.229876 GCGAATTTTCACTCAAAGGAAGG 58.770 43.478 0.00 0.00 0.00 3.46
4174 4460 6.918892 ACAAAAGCACCTTTGAATTTTACC 57.081 33.333 11.51 0.00 38.35 2.85
4213 4499 5.388578 GCAGTCTTTTGTTAAGCTAGACGAC 60.389 44.000 0.00 2.39 40.03 4.34
4253 4539 6.436847 TGACTTATTTGCCTCATCCAAAATCA 59.563 34.615 0.00 0.00 35.97 2.57
4258 4544 2.945008 TGCCTCATCCAAAATCATCGAC 59.055 45.455 0.00 0.00 0.00 4.20
4445 4731 4.760715 CAGATCAGCCTAATGAAGAATGGG 59.239 45.833 0.00 0.00 31.76 4.00
4791 5081 6.295292 GGATTGCTTTTGATTCAACCCTTACT 60.295 38.462 0.00 0.00 0.00 2.24
4792 5082 5.705609 TGCTTTTGATTCAACCCTTACTC 57.294 39.130 0.00 0.00 0.00 2.59
4793 5083 5.385198 TGCTTTTGATTCAACCCTTACTCT 58.615 37.500 0.00 0.00 0.00 3.24
4794 5084 5.833131 TGCTTTTGATTCAACCCTTACTCTT 59.167 36.000 0.00 0.00 0.00 2.85
4795 5085 7.001674 TGCTTTTGATTCAACCCTTACTCTTA 58.998 34.615 0.00 0.00 0.00 2.10
4796 5086 7.504238 TGCTTTTGATTCAACCCTTACTCTTAA 59.496 33.333 0.00 0.00 0.00 1.85
4797 5087 8.523658 GCTTTTGATTCAACCCTTACTCTTAAT 58.476 33.333 0.00 0.00 0.00 1.40
4800 5090 8.934023 TTGATTCAACCCTTACTCTTAATTGT 57.066 30.769 0.00 0.00 0.00 2.71
4801 5091 8.335532 TGATTCAACCCTTACTCTTAATTGTG 57.664 34.615 0.00 0.00 0.00 3.33
4802 5092 7.393234 TGATTCAACCCTTACTCTTAATTGTGG 59.607 37.037 0.00 0.00 0.00 4.17
4803 5093 6.442541 TCAACCCTTACTCTTAATTGTGGA 57.557 37.500 0.00 0.00 0.00 4.02
4804 5094 6.843752 TCAACCCTTACTCTTAATTGTGGAA 58.156 36.000 0.00 0.00 0.00 3.53
4805 5095 7.466804 TCAACCCTTACTCTTAATTGTGGAAT 58.533 34.615 0.00 0.00 0.00 3.01
4806 5096 7.610305 TCAACCCTTACTCTTAATTGTGGAATC 59.390 37.037 0.00 0.00 0.00 2.52
4807 5097 7.027874 ACCCTTACTCTTAATTGTGGAATCA 57.972 36.000 0.00 0.00 0.00 2.57
4808 5098 6.884836 ACCCTTACTCTTAATTGTGGAATCAC 59.115 38.462 0.00 0.00 43.87 3.06
4885 5206 1.679680 GTCATTGGTATGCATGCAGCT 59.320 47.619 26.69 12.95 45.94 4.24
4981 5334 5.361857 CCTGCTTTATGTCCTGATTTGGATT 59.638 40.000 0.00 0.00 38.52 3.01
5000 5353 1.470051 TGCGTGCCACTGATAGACTA 58.530 50.000 0.00 0.00 0.00 2.59
5001 5354 1.822371 TGCGTGCCACTGATAGACTAA 59.178 47.619 0.00 0.00 0.00 2.24
5183 5536 5.636121 CGGGGTTAAAAAGCTTCCATTAAAC 59.364 40.000 14.40 14.40 0.00 2.01
5298 5651 5.335976 GGCCTGAATTTTCCAAGTTAGTCAG 60.336 44.000 0.00 0.00 0.00 3.51
5605 5958 3.181493 CCATGGCAGAGCACTTTAATCAC 60.181 47.826 0.00 0.00 0.00 3.06
5810 6165 3.225104 TGGCTGCTCAAAGAAATGAAGT 58.775 40.909 0.00 0.00 0.00 3.01
5848 6234 5.531287 CAGGAGGTAACAACAGCTAAACTTT 59.469 40.000 0.00 0.00 41.41 2.66
5849 6235 6.039382 CAGGAGGTAACAACAGCTAAACTTTT 59.961 38.462 0.00 0.00 41.41 2.27
5850 6236 6.605995 AGGAGGTAACAACAGCTAAACTTTTT 59.394 34.615 0.00 0.00 41.41 1.94
5875 6261 7.985634 TTTTTCTGATGAACAACAGCTAAAC 57.014 32.000 7.11 0.00 35.75 2.01
5876 6262 6.942532 TTTCTGATGAACAACAGCTAAACT 57.057 33.333 7.11 0.00 35.75 2.66
5877 6263 6.942532 TTCTGATGAACAACAGCTAAACTT 57.057 33.333 7.11 0.00 35.75 2.66
5999 6385 5.285845 CGATTGCGCAGATTAAATTTCAACA 59.714 36.000 11.31 0.00 0.00 3.33
6022 6408 1.282248 TGCACGTCTAGCAACTTCGC 61.282 55.000 0.00 0.00 39.39 4.70
6343 6757 5.221803 ACACTCTCCCATTCATATAGGCTTG 60.222 44.000 0.00 0.00 0.00 4.01
6425 6839 4.537965 GCTCTACCATACTATGTCGTGTG 58.462 47.826 0.00 0.00 0.00 3.82
6444 6858 3.450457 TGTGCATCCTTTTGTTTTGGAGT 59.550 39.130 0.00 0.00 32.95 3.85
6493 6907 0.250901 CCCACCACCCAACTCTTCAG 60.251 60.000 0.00 0.00 0.00 3.02
6713 7127 2.877975 GCAACTGAGATGCCCATGT 58.122 52.632 3.01 0.00 37.85 3.21
6714 7128 0.454600 GCAACTGAGATGCCCATGTG 59.545 55.000 3.01 0.00 37.85 3.21
6715 7129 1.100510 CAACTGAGATGCCCATGTGG 58.899 55.000 0.00 0.00 37.09 4.17
6725 7139 2.877975 CCCATGTGGCTTCTTGAGG 58.122 57.895 0.00 0.00 0.00 3.86
6731 7145 3.819188 GGCTTCTTGAGGCCATCG 58.181 61.111 17.21 0.00 46.84 3.84
6732 7146 1.221840 GGCTTCTTGAGGCCATCGA 59.778 57.895 17.21 0.00 46.84 3.59
6733 7147 0.179034 GGCTTCTTGAGGCCATCGAT 60.179 55.000 17.21 0.00 46.84 3.59
6739 7153 1.869767 CTTGAGGCCATCGATAAGTGC 59.130 52.381 5.01 0.00 0.00 4.40
6768 7182 1.378531 GCCATCGATAAGTGGTTGCA 58.621 50.000 0.00 0.00 37.81 4.08
6807 7221 1.153628 ACCTCGACGCTAATGGTGC 60.154 57.895 0.00 0.00 0.00 5.01
6909 7323 2.635714 CTTGGTGCTGCATGTGAGATA 58.364 47.619 5.27 0.00 0.00 1.98
7042 7456 5.765677 ACAGAGCTAAAAAGGAGAAAACTCC 59.234 40.000 8.06 8.06 43.65 3.85
7086 7500 2.427232 TGCTTTGAATTGAGCTGCAC 57.573 45.000 1.02 0.00 39.60 4.57
7091 7505 1.241165 TGAATTGAGCTGCACACTGG 58.759 50.000 1.02 0.00 0.00 4.00
7196 7611 6.556495 TGTAGAGGAGAAATATCAAGCATCCT 59.444 38.462 0.00 0.00 38.39 3.24
7225 7640 3.443681 TGTAAGCAAGCTTAAATCAGCCC 59.556 43.478 15.43 2.65 41.12 5.19
7464 7888 3.274288 GTCTTGGTCAATAAGAGGGCAG 58.726 50.000 0.00 0.00 35.03 4.85
7479 7903 3.099438 CAGCAGCATCTTGGCTCG 58.901 61.111 0.00 0.00 43.68 5.03
7700 8154 6.488344 TGTGCCTATGTTTGTACAGAATCAAA 59.512 34.615 0.00 0.00 37.77 2.69
7788 8250 1.482593 CAAGTACAGAAGGAGGCGGAT 59.517 52.381 0.00 0.00 0.00 4.18
7794 8256 0.466124 AGAAGGAGGCGGATTGCTAC 59.534 55.000 0.00 0.00 45.43 3.58
7847 8311 1.813513 AGGGTGAGACAATTGCGAAG 58.186 50.000 5.05 0.00 0.00 3.79
7864 8328 3.653344 CGAAGTTGACTCAGGATGACAA 58.347 45.455 0.00 0.00 42.56 3.18
7868 8332 3.648067 AGTTGACTCAGGATGACAAAGGA 59.352 43.478 0.00 0.00 42.56 3.36
7958 8422 5.036117 ACTCTTATATGTGGCGTCCAATT 57.964 39.130 0.00 0.00 34.18 2.32
7962 8426 5.295787 TCTTATATGTGGCGTCCAATTTGTC 59.704 40.000 0.00 0.00 34.18 3.18
7975 8439 6.457663 CGTCCAATTTGTCAGTTGTTCACTTA 60.458 38.462 0.00 0.00 30.92 2.24
8040 8506 1.247567 CGGAAGTTGGGAGCACAAAT 58.752 50.000 0.00 0.00 31.17 2.32
8106 8579 4.218852 CGAAGAAGACAAGAAGGGACTAGT 59.781 45.833 0.00 0.00 38.49 2.57
8110 8589 6.316513 AGAAGACAAGAAGGGACTAGTAGTT 58.683 40.000 3.85 0.00 38.49 2.24
8114 8593 8.750515 AGACAAGAAGGGACTAGTAGTTATAC 57.249 38.462 3.85 0.00 38.49 1.47
8126 8605 5.121380 AGTAGTTATACGGAGTCTGGGAA 57.879 43.478 3.50 0.00 43.93 3.97
8163 8642 8.097038 GCTCATGGTATAATCTCAAGTCCAATA 58.903 37.037 0.00 0.00 0.00 1.90
8215 8695 4.136796 CAAGGGGATGAAGAATATTCGCA 58.863 43.478 9.78 12.13 0.00 5.10
8218 8698 5.200483 AGGGGATGAAGAATATTCGCAAAA 58.800 37.500 14.99 1.42 0.00 2.44
8221 8701 6.405842 GGGGATGAAGAATATTCGCAAAAGTT 60.406 38.462 14.99 1.83 0.00 2.66
8263 8744 9.525409 GTGTCGAATATTATTGTACAAGGTAGT 57.475 33.333 14.65 5.98 0.00 2.73
8264 8745 9.524106 TGTCGAATATTATTGTACAAGGTAGTG 57.476 33.333 14.65 0.48 0.00 2.74
8275 8756 6.927416 TGTACAAGGTAGTGTATAGTGTTGG 58.073 40.000 0.00 0.00 36.42 3.77
8276 8757 5.416271 ACAAGGTAGTGTATAGTGTTGGG 57.584 43.478 0.00 0.00 0.00 4.12
8277 8758 5.088730 ACAAGGTAGTGTATAGTGTTGGGA 58.911 41.667 0.00 0.00 0.00 4.37
8278 8759 5.544948 ACAAGGTAGTGTATAGTGTTGGGAA 59.455 40.000 0.00 0.00 0.00 3.97
8279 8760 6.043474 ACAAGGTAGTGTATAGTGTTGGGAAA 59.957 38.462 0.00 0.00 0.00 3.13
8280 8761 6.046290 AGGTAGTGTATAGTGTTGGGAAAC 57.954 41.667 0.00 0.00 0.00 2.78
8281 8762 5.544948 AGGTAGTGTATAGTGTTGGGAAACA 59.455 40.000 0.00 0.00 0.00 2.83
8282 8763 6.214819 AGGTAGTGTATAGTGTTGGGAAACAT 59.785 38.462 0.00 0.00 34.86 2.71
8283 8764 7.400915 AGGTAGTGTATAGTGTTGGGAAACATA 59.599 37.037 0.00 0.00 34.86 2.29
8284 8765 7.709613 GGTAGTGTATAGTGTTGGGAAACATAG 59.290 40.741 0.00 0.00 34.86 2.23
8285 8766 7.253905 AGTGTATAGTGTTGGGAAACATAGT 57.746 36.000 0.00 0.00 34.86 2.12
8286 8767 8.370266 AGTGTATAGTGTTGGGAAACATAGTA 57.630 34.615 0.00 0.00 34.86 1.82
8287 8768 8.475639 AGTGTATAGTGTTGGGAAACATAGTAG 58.524 37.037 0.00 0.00 34.86 2.57
8288 8769 8.472413 GTGTATAGTGTTGGGAAACATAGTAGA 58.528 37.037 0.00 0.00 34.86 2.59
8289 8770 9.038072 TGTATAGTGTTGGGAAACATAGTAGAA 57.962 33.333 0.00 0.00 34.86 2.10
8290 8771 9.880157 GTATAGTGTTGGGAAACATAGTAGAAA 57.120 33.333 0.00 0.00 34.86 2.52
8292 8773 7.506328 AGTGTTGGGAAACATAGTAGAAAAC 57.494 36.000 0.00 0.00 34.86 2.43
8293 8774 7.057894 AGTGTTGGGAAACATAGTAGAAAACA 58.942 34.615 0.00 0.00 34.86 2.83
8294 8775 7.558444 AGTGTTGGGAAACATAGTAGAAAACAA 59.442 33.333 0.00 0.00 34.86 2.83
8295 8776 8.192110 GTGTTGGGAAACATAGTAGAAAACAAA 58.808 33.333 0.00 0.00 34.86 2.83
8296 8777 8.750298 TGTTGGGAAACATAGTAGAAAACAAAA 58.250 29.630 0.00 0.00 0.00 2.44
8297 8778 9.589111 GTTGGGAAACATAGTAGAAAACAAAAA 57.411 29.630 0.00 0.00 0.00 1.94
8320 8801 4.771114 AAAATCACCCTACGATCATCCA 57.229 40.909 0.00 0.00 0.00 3.41
8321 8802 4.342862 AAATCACCCTACGATCATCCAG 57.657 45.455 0.00 0.00 0.00 3.86
8322 8803 1.704641 TCACCCTACGATCATCCAGG 58.295 55.000 0.00 0.00 0.00 4.45
8323 8804 1.216930 TCACCCTACGATCATCCAGGA 59.783 52.381 0.00 0.00 0.00 3.86
8324 8805 2.039418 CACCCTACGATCATCCAGGAA 58.961 52.381 0.00 0.00 0.00 3.36
8325 8806 2.040178 ACCCTACGATCATCCAGGAAC 58.960 52.381 0.00 0.00 0.00 3.62
8326 8807 2.039418 CCCTACGATCATCCAGGAACA 58.961 52.381 0.00 0.00 0.00 3.18
8327 8808 2.434336 CCCTACGATCATCCAGGAACAA 59.566 50.000 0.00 0.00 0.00 2.83
8328 8809 3.071602 CCCTACGATCATCCAGGAACAAT 59.928 47.826 0.00 0.00 0.00 2.71
8329 8810 4.283467 CCCTACGATCATCCAGGAACAATA 59.717 45.833 0.00 0.00 0.00 1.90
8330 8811 5.046304 CCCTACGATCATCCAGGAACAATAT 60.046 44.000 0.00 0.00 0.00 1.28
8331 8812 5.871524 CCTACGATCATCCAGGAACAATATG 59.128 44.000 0.00 0.00 0.00 1.78
8332 8813 5.551305 ACGATCATCCAGGAACAATATGA 57.449 39.130 0.00 0.00 0.00 2.15
8333 8814 5.928976 ACGATCATCCAGGAACAATATGAA 58.071 37.500 0.00 0.00 30.90 2.57
8334 8815 5.994054 ACGATCATCCAGGAACAATATGAAG 59.006 40.000 0.00 0.00 30.90 3.02
8335 8816 6.183361 ACGATCATCCAGGAACAATATGAAGA 60.183 38.462 0.00 0.00 30.90 2.87
8336 8817 6.877855 CGATCATCCAGGAACAATATGAAGAT 59.122 38.462 0.00 0.00 30.90 2.40
8337 8818 7.148457 CGATCATCCAGGAACAATATGAAGATG 60.148 40.741 0.00 0.00 30.90 2.90
8338 8819 5.766670 TCATCCAGGAACAATATGAAGATGC 59.233 40.000 0.00 0.00 0.00 3.91
8339 8820 5.114764 TCCAGGAACAATATGAAGATGCA 57.885 39.130 0.00 0.00 0.00 3.96
8340 8821 5.698104 TCCAGGAACAATATGAAGATGCAT 58.302 37.500 0.00 0.00 0.00 3.96
8341 8822 6.840527 TCCAGGAACAATATGAAGATGCATA 58.159 36.000 0.00 0.00 35.41 3.14
8342 8823 7.289310 TCCAGGAACAATATGAAGATGCATAA 58.711 34.615 0.00 0.00 34.67 1.90
8343 8824 7.229306 TCCAGGAACAATATGAAGATGCATAAC 59.771 37.037 0.00 0.00 34.67 1.89
8344 8825 7.013559 CCAGGAACAATATGAAGATGCATAACA 59.986 37.037 0.00 0.35 34.67 2.41
8345 8826 8.074370 CAGGAACAATATGAAGATGCATAACAG 58.926 37.037 0.00 0.00 34.67 3.16
8346 8827 7.230108 AGGAACAATATGAAGATGCATAACAGG 59.770 37.037 0.00 0.00 34.67 4.00
8347 8828 7.013655 GGAACAATATGAAGATGCATAACAGGT 59.986 37.037 0.00 0.00 34.67 4.00
8348 8829 7.886629 ACAATATGAAGATGCATAACAGGTT 57.113 32.000 0.00 0.00 34.67 3.50
8349 8830 7.709947 ACAATATGAAGATGCATAACAGGTTG 58.290 34.615 0.00 11.11 34.67 3.77
8350 8831 7.340232 ACAATATGAAGATGCATAACAGGTTGT 59.660 33.333 0.00 11.65 34.67 3.32
8351 8832 5.571784 ATGAAGATGCATAACAGGTTGTG 57.428 39.130 0.00 4.74 35.22 3.33
8352 8833 4.650734 TGAAGATGCATAACAGGTTGTGA 58.349 39.130 12.30 0.00 34.19 3.58
8353 8834 5.255687 TGAAGATGCATAACAGGTTGTGAT 58.744 37.500 12.30 4.05 34.19 3.06
8354 8835 5.355071 TGAAGATGCATAACAGGTTGTGATC 59.645 40.000 12.30 11.15 34.19 2.92
8355 8836 4.847198 AGATGCATAACAGGTTGTGATCA 58.153 39.130 12.30 0.00 34.19 2.92
8356 8837 5.255687 AGATGCATAACAGGTTGTGATCAA 58.744 37.500 12.30 0.00 34.19 2.57
8357 8838 5.889853 AGATGCATAACAGGTTGTGATCAAT 59.110 36.000 12.30 1.26 34.19 2.57
8358 8839 5.313520 TGCATAACAGGTTGTGATCAATG 57.686 39.130 12.30 0.00 34.19 2.82
8359 8840 5.008980 TGCATAACAGGTTGTGATCAATGA 58.991 37.500 12.30 0.00 34.19 2.57
8360 8841 5.653330 TGCATAACAGGTTGTGATCAATGAT 59.347 36.000 12.30 0.00 34.19 2.45
8361 8842 6.183360 TGCATAACAGGTTGTGATCAATGATC 60.183 38.462 15.86 15.86 39.31 2.92
8362 8843 4.952262 AACAGGTTGTGATCAATGATCG 57.048 40.909 17.31 4.89 41.51 3.69
8363 8844 3.942829 ACAGGTTGTGATCAATGATCGT 58.057 40.909 17.31 5.48 41.51 3.73
8364 8845 4.326826 ACAGGTTGTGATCAATGATCGTT 58.673 39.130 17.31 0.00 41.51 3.85
8365 8846 5.487433 ACAGGTTGTGATCAATGATCGTTA 58.513 37.500 17.31 4.57 41.51 3.18
8366 8847 5.351465 ACAGGTTGTGATCAATGATCGTTAC 59.649 40.000 17.31 13.61 41.51 2.50
8367 8848 4.876107 AGGTTGTGATCAATGATCGTTACC 59.124 41.667 22.10 22.10 41.51 2.85
8368 8849 4.634004 GGTTGTGATCAATGATCGTTACCA 59.366 41.667 23.49 12.32 41.51 3.25
8369 8850 5.123186 GGTTGTGATCAATGATCGTTACCAA 59.877 40.000 23.49 15.87 41.51 3.67
8370 8851 5.794687 TGTGATCAATGATCGTTACCAAC 57.205 39.130 17.31 9.17 41.51 3.77
8371 8852 5.487433 TGTGATCAATGATCGTTACCAACT 58.513 37.500 17.31 0.00 41.51 3.16
8372 8853 5.580691 TGTGATCAATGATCGTTACCAACTC 59.419 40.000 17.31 0.00 41.51 3.01
8373 8854 5.006746 GTGATCAATGATCGTTACCAACTCC 59.993 44.000 17.31 0.00 41.51 3.85
8374 8855 3.869065 TCAATGATCGTTACCAACTCCC 58.131 45.455 0.00 0.00 0.00 4.30
8375 8856 2.596904 ATGATCGTTACCAACTCCCG 57.403 50.000 0.00 0.00 0.00 5.14
8376 8857 0.533491 TGATCGTTACCAACTCCCGG 59.467 55.000 0.00 0.00 0.00 5.73
8377 8858 0.819582 GATCGTTACCAACTCCCGGA 59.180 55.000 0.73 0.00 0.00 5.14
8378 8859 0.822164 ATCGTTACCAACTCCCGGAG 59.178 55.000 13.31 13.31 35.52 4.63
8379 8860 0.540365 TCGTTACCAACTCCCGGAGT 60.540 55.000 14.84 14.84 45.64 3.85
8380 8861 0.389426 CGTTACCAACTCCCGGAGTG 60.389 60.000 21.15 11.75 42.59 3.51
8381 8862 0.672711 GTTACCAACTCCCGGAGTGC 60.673 60.000 21.15 4.20 42.59 4.40
8382 8863 1.122632 TTACCAACTCCCGGAGTGCA 61.123 55.000 21.15 3.91 42.59 4.57
8383 8864 1.541310 TACCAACTCCCGGAGTGCAG 61.541 60.000 21.15 14.25 42.59 4.41
8384 8865 2.743928 CAACTCCCGGAGTGCAGC 60.744 66.667 21.15 0.00 42.59 5.25
8385 8866 4.379243 AACTCCCGGAGTGCAGCG 62.379 66.667 21.15 0.00 42.59 5.18
8387 8868 4.069232 CTCCCGGAGTGCAGCGAA 62.069 66.667 0.73 0.00 0.00 4.70
8388 8869 3.589654 CTCCCGGAGTGCAGCGAAA 62.590 63.158 0.73 0.00 0.00 3.46
8389 8870 3.121030 CCCGGAGTGCAGCGAAAG 61.121 66.667 0.73 0.00 0.00 2.62
8390 8871 2.357517 CCGGAGTGCAGCGAAAGT 60.358 61.111 0.00 0.00 0.00 2.66
8391 8872 1.080093 CCGGAGTGCAGCGAAAGTA 60.080 57.895 0.00 0.00 0.00 2.24
8392 8873 1.078759 CCGGAGTGCAGCGAAAGTAG 61.079 60.000 0.00 0.00 0.00 2.57
8393 8874 0.109272 CGGAGTGCAGCGAAAGTAGA 60.109 55.000 0.00 0.00 0.00 2.59
8394 8875 1.469940 CGGAGTGCAGCGAAAGTAGAT 60.470 52.381 0.00 0.00 0.00 1.98
8395 8876 1.929836 GGAGTGCAGCGAAAGTAGATG 59.070 52.381 0.00 0.00 0.00 2.90
8396 8877 2.417379 GGAGTGCAGCGAAAGTAGATGA 60.417 50.000 0.00 0.00 0.00 2.92
8397 8878 2.857152 GAGTGCAGCGAAAGTAGATGAG 59.143 50.000 0.00 0.00 0.00 2.90
8398 8879 2.232452 AGTGCAGCGAAAGTAGATGAGT 59.768 45.455 0.00 0.00 0.00 3.41
8399 8880 2.600867 GTGCAGCGAAAGTAGATGAGTC 59.399 50.000 0.00 0.00 0.00 3.36
8400 8881 2.197577 GCAGCGAAAGTAGATGAGTCC 58.802 52.381 0.00 0.00 0.00 3.85
8401 8882 2.455032 CAGCGAAAGTAGATGAGTCCG 58.545 52.381 0.00 0.00 0.00 4.79
8402 8883 2.093106 AGCGAAAGTAGATGAGTCCGT 58.907 47.619 0.00 0.00 0.00 4.69
8403 8884 2.159366 AGCGAAAGTAGATGAGTCCGTG 60.159 50.000 0.00 0.00 0.00 4.94
8404 8885 2.415625 GCGAAAGTAGATGAGTCCGTGT 60.416 50.000 0.00 0.00 0.00 4.49
8405 8886 3.181503 GCGAAAGTAGATGAGTCCGTGTA 60.182 47.826 0.00 0.00 0.00 2.90
8406 8887 4.589252 CGAAAGTAGATGAGTCCGTGTAG 58.411 47.826 0.00 0.00 0.00 2.74
8407 8888 4.331992 CGAAAGTAGATGAGTCCGTGTAGA 59.668 45.833 0.00 0.00 0.00 2.59
8408 8889 5.007823 CGAAAGTAGATGAGTCCGTGTAGAT 59.992 44.000 0.00 0.00 0.00 1.98
8409 8890 6.380095 AAAGTAGATGAGTCCGTGTAGATC 57.620 41.667 0.00 0.00 0.00 2.75
8410 8891 4.059511 AGTAGATGAGTCCGTGTAGATCG 58.940 47.826 0.00 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 0.605319 TTGTAGGCGGTTTCAGGCAG 60.605 55.000 0.00 0.00 36.55 4.85
105 106 4.156008 GGATACGCTGAACCTTCAAATGTT 59.844 41.667 0.00 0.00 36.64 2.71
121 122 6.183360 CATAGATGATGAAATGGTGGATACGC 60.183 42.308 0.00 0.00 41.82 4.42
290 291 2.132762 ACAGTTTTCGAACTACCGCTG 58.867 47.619 0.00 3.10 0.00 5.18
294 295 2.989166 CCCGTACAGTTTTCGAACTACC 59.011 50.000 0.00 0.00 0.00 3.18
304 305 1.003718 GGAGCAGCCCGTACAGTTT 60.004 57.895 0.00 0.00 0.00 2.66
433 434 3.557686 CCTGGAGATGTGATGTGTGTTCA 60.558 47.826 0.00 0.00 0.00 3.18
789 793 1.301716 TTCCTTCACCAGCGTCTGC 60.302 57.895 1.84 0.00 43.24 4.26
809 813 1.748122 CTTCTCGGCTGCCATGCTT 60.748 57.895 20.29 0.00 0.00 3.91
820 824 4.500545 CCACCATCTGTTCTATCTTCTCGG 60.501 50.000 0.00 0.00 0.00 4.63
821 825 4.339530 TCCACCATCTGTTCTATCTTCTCG 59.660 45.833 0.00 0.00 0.00 4.04
842 846 2.541288 CATCGCATGCAGAGGATCC 58.459 57.895 19.57 2.48 33.66 3.36
854 858 0.173255 TCATGTCGAGAAGCATCGCA 59.827 50.000 0.00 4.09 42.43 5.10
904 908 0.610232 CTCAACTTTGGCTGGGGGAG 60.610 60.000 0.00 0.00 0.00 4.30
1065 1074 3.665675 CTTCTTCGGAGCCACGGGG 62.666 68.421 0.00 0.00 37.18 5.73
1238 1255 0.673985 TAGGGCGATGATTCGGACAG 59.326 55.000 0.00 0.00 45.59 3.51
1245 1262 5.182001 GCACAAGATAATTAGGGCGATGATT 59.818 40.000 0.00 0.00 0.00 2.57
1247 1264 4.065088 GCACAAGATAATTAGGGCGATGA 58.935 43.478 0.00 0.00 0.00 2.92
1251 1268 2.851195 AGGCACAAGATAATTAGGGCG 58.149 47.619 0.00 0.00 0.00 6.13
1258 1275 4.225942 TCACTCCTCAAGGCACAAGATAAT 59.774 41.667 0.00 0.00 34.44 1.28
1269 1294 1.197430 AGGCACCTCACTCCTCAAGG 61.197 60.000 0.00 0.00 36.21 3.61
1270 1295 0.036577 CAGGCACCTCACTCCTCAAG 60.037 60.000 0.00 0.00 0.00 3.02
1271 1296 0.471780 TCAGGCACCTCACTCCTCAA 60.472 55.000 0.00 0.00 0.00 3.02
1296 1336 1.538512 CACAGTTTGGTCCAGCATCAG 59.461 52.381 0.00 0.00 0.00 2.90
1324 1366 2.253452 CAAGCCAACGAGTGCTGC 59.747 61.111 0.00 0.00 38.00 5.25
1339 1381 1.134340 ACTACGGGACACACTTTGCAA 60.134 47.619 0.00 0.00 0.00 4.08
1344 1386 1.288127 GCGACTACGGGACACACTT 59.712 57.895 0.00 0.00 40.15 3.16
1345 1387 2.960170 GCGACTACGGGACACACT 59.040 61.111 0.00 0.00 40.15 3.55
1389 1431 0.951558 CTGACGGAAAACCAACCCAG 59.048 55.000 0.00 0.00 0.00 4.45
1391 1433 1.802337 GCCTGACGGAAAACCAACCC 61.802 60.000 0.00 0.00 0.00 4.11
1429 1471 4.505217 GAAGCGCACGACGGCATG 62.505 66.667 11.47 0.00 43.93 4.06
1492 1534 2.622714 CCTCATCTGAGACCTGGACAGA 60.623 54.545 18.61 18.61 44.74 3.41
1710 1778 2.062636 AGCAACCAGAGGACCCTTTAA 58.937 47.619 0.00 0.00 0.00 1.52
1715 1783 1.003233 GACAGCAACCAGAGGACCC 60.003 63.158 0.00 0.00 0.00 4.46
1757 1834 1.534175 CGGATACTGTCGCTCCTTGTC 60.534 57.143 0.00 0.00 0.00 3.18
1758 1835 0.456221 CGGATACTGTCGCTCCTTGT 59.544 55.000 0.00 0.00 0.00 3.16
1759 1836 0.456221 ACGGATACTGTCGCTCCTTG 59.544 55.000 0.00 0.00 0.00 3.61
1760 1837 0.456221 CACGGATACTGTCGCTCCTT 59.544 55.000 0.00 0.00 0.00 3.36
1761 1838 0.680280 ACACGGATACTGTCGCTCCT 60.680 55.000 0.00 0.00 0.00 3.69
1762 1839 0.248539 GACACGGATACTGTCGCTCC 60.249 60.000 0.00 0.00 35.86 4.70
1767 1844 2.228103 TGTCAGTGACACGGATACTGTC 59.772 50.000 22.06 4.23 41.82 3.51
1771 1848 1.993370 GCTTGTCAGTGACACGGATAC 59.007 52.381 25.43 7.33 42.60 2.24
1930 2009 2.536997 AAAAGCTCGGATGGGGACGG 62.537 60.000 0.00 0.00 0.00 4.79
1992 2075 0.334676 AGTGAGACAGAGAGAGGGGG 59.665 60.000 0.00 0.00 0.00 5.40
2030 2114 0.967380 GGGGGCTGACATGAAGGTTG 60.967 60.000 0.00 0.00 0.00 3.77
2080 2164 1.143183 GCCGACGCCTCCAGAAATA 59.857 57.895 0.00 0.00 0.00 1.40
2082 2166 4.735132 CGCCGACGCCTCCAGAAA 62.735 66.667 0.00 0.00 0.00 2.52
2144 2228 0.837272 CCGGACCAATCCATACCTGT 59.163 55.000 0.00 0.00 46.67 4.00
2339 2432 5.186198 GCCTTGTAGGAGATAGAGCAAAAA 58.814 41.667 0.00 0.00 37.67 1.94
2350 2453 0.472925 TGGTGGTGCCTTGTAGGAGA 60.473 55.000 0.00 0.00 37.67 3.71
2428 2534 1.279271 CTCCCGGGAGCCTATTAATGG 59.721 57.143 36.90 10.71 35.31 3.16
2429 2535 2.770164 CTCCCGGGAGCCTATTAATG 57.230 55.000 36.90 11.29 35.31 1.90
2467 2579 1.919240 AACCGGAAATTTGTCTCCCC 58.081 50.000 9.46 0.00 0.00 4.81
2473 2585 2.599677 TGGCCTAAACCGGAAATTTGT 58.400 42.857 9.46 0.00 0.00 2.83
2474 2586 3.669251 TTGGCCTAAACCGGAAATTTG 57.331 42.857 9.46 1.01 0.00 2.32
2521 2635 2.954318 ACACACTGAGCAGAGCATTTTT 59.046 40.909 4.21 0.00 0.00 1.94
2523 2637 2.267174 ACACACTGAGCAGAGCATTT 57.733 45.000 4.21 0.00 0.00 2.32
2539 2653 9.376075 CTGATGTTCCTTCCATATATGATACAC 57.624 37.037 14.54 4.04 0.00 2.90
2573 2690 5.188327 TCGTTTAGATCACTATCTGCAGG 57.812 43.478 15.13 0.00 42.60 4.85
2605 2722 8.517047 TCCCTATAATTACTCCCTCTGTAAAGA 58.483 37.037 0.00 0.00 34.20 2.52
2607 2724 9.510062 TTTCCCTATAATTACTCCCTCTGTAAA 57.490 33.333 0.00 0.00 34.20 2.01
2608 2725 9.684702 ATTTCCCTATAATTACTCCCTCTGTAA 57.315 33.333 0.00 0.00 34.87 2.41
2610 2727 9.102453 GTATTTCCCTATAATTACTCCCTCTGT 57.898 37.037 0.00 0.00 0.00 3.41
2611 2728 9.101325 TGTATTTCCCTATAATTACTCCCTCTG 57.899 37.037 0.00 0.00 0.00 3.35
2612 2729 9.327731 CTGTATTTCCCTATAATTACTCCCTCT 57.672 37.037 0.00 0.00 0.00 3.69
2613 2730 9.102453 ACTGTATTTCCCTATAATTACTCCCTC 57.898 37.037 0.00 0.00 0.00 4.30
2668 2800 6.438259 TTCGACATTTTACTTGGTTGTTGA 57.562 33.333 0.00 0.00 0.00 3.18
2693 2825 4.926860 TGTCAGCGTAAATGACTTGATG 57.073 40.909 7.52 0.00 45.87 3.07
2821 3104 3.922171 AATGAATCCAGTCTCCAGGAC 57.078 47.619 0.00 0.00 44.80 3.85
2857 3140 6.879458 AGTACAAGATATTTGAGGTGGTTCAC 59.121 38.462 0.00 0.00 0.00 3.18
2876 3159 9.019656 AGAATTGGTTGCATAAATACAGTACAA 57.980 29.630 0.00 0.00 0.00 2.41
2925 3208 9.997482 TTAAATATGCCGTGTTTTCTTTATCTC 57.003 29.630 0.00 0.00 0.00 2.75
2963 3247 5.217978 ACCTGTAACACGAATACAAAGGA 57.782 39.130 0.00 0.00 33.17 3.36
2974 3258 3.571571 TCGAAGATCAACCTGTAACACG 58.428 45.455 0.00 0.00 0.00 4.49
3091 3375 4.094294 TCTTGGAGTGTGAAAACTGTTTCG 59.906 41.667 6.20 0.00 45.26 3.46
3103 3387 5.124297 TGCATAATCAACATCTTGGAGTGTG 59.876 40.000 0.00 0.00 0.00 3.82
3135 3419 7.538678 CACAAAATTACTTACAATCAGCAGGTC 59.461 37.037 0.00 0.00 0.00 3.85
3136 3420 7.370383 CACAAAATTACTTACAATCAGCAGGT 58.630 34.615 0.00 0.00 0.00 4.00
3138 3422 6.862608 TGCACAAAATTACTTACAATCAGCAG 59.137 34.615 0.00 0.00 0.00 4.24
3140 3424 6.863126 AGTGCACAAAATTACTTACAATCAGC 59.137 34.615 21.04 0.00 0.00 4.26
3155 3439 2.445565 TGCAAACACAGTGCACAAAA 57.554 40.000 21.04 0.00 46.76 2.44
3238 3524 7.413657 GCAGATGCACATATTTGATTGCTTTTT 60.414 33.333 0.00 0.00 41.59 1.94
3239 3525 6.036735 GCAGATGCACATATTTGATTGCTTTT 59.963 34.615 0.00 0.00 41.59 2.27
3240 3526 5.522460 GCAGATGCACATATTTGATTGCTTT 59.478 36.000 0.00 0.00 41.59 3.51
3241 3527 5.047847 GCAGATGCACATATTTGATTGCTT 58.952 37.500 0.00 0.00 41.59 3.91
3242 3528 4.341235 AGCAGATGCACATATTTGATTGCT 59.659 37.500 7.68 0.00 45.16 3.91
3243 3529 4.617959 AGCAGATGCACATATTTGATTGC 58.382 39.130 7.68 0.00 45.16 3.56
3244 3530 6.967135 ACTAGCAGATGCACATATTTGATTG 58.033 36.000 7.68 0.00 45.16 2.67
3245 3531 7.067859 ACAACTAGCAGATGCACATATTTGATT 59.932 33.333 7.68 0.00 45.16 2.57
3246 3532 6.544931 ACAACTAGCAGATGCACATATTTGAT 59.455 34.615 7.68 0.00 45.16 2.57
3247 3533 5.882000 ACAACTAGCAGATGCACATATTTGA 59.118 36.000 7.68 0.00 45.16 2.69
3321 3607 5.164954 CAGAGTGTAAGTTAGACTTCCTGC 58.835 45.833 13.46 1.67 39.51 4.85
3337 3623 3.649981 CCAATGATATCCCTCCAGAGTGT 59.350 47.826 0.00 0.00 0.00 3.55
3402 3688 0.808125 ACTGCTCTCAGCTGACGTAG 59.192 55.000 13.74 16.98 44.10 3.51
3483 3769 5.874810 TCGATCTGGGAACATTTTTCTACTG 59.125 40.000 0.00 0.00 41.51 2.74
3930 4216 4.207841 GCAAGTTCTTTGATGTCTGTTTGC 59.792 41.667 0.00 0.00 39.21 3.68
4158 4444 5.001232 TCTCCTCGGTAAAATTCAAAGGTG 58.999 41.667 0.00 0.00 0.00 4.00
4174 4460 3.594134 AGACTGCTCATTTTTCTCCTCG 58.406 45.455 0.00 0.00 0.00 4.63
4213 4499 8.487176 GCAAATAAGTCAAATAGTTTGTGTTGG 58.513 33.333 2.74 0.00 41.36 3.77
4253 4539 6.150976 TGAAAGGCTTGTAATGAATTGTCGAT 59.849 34.615 0.00 0.00 0.00 3.59
4258 4544 8.592105 TTTCTTGAAAGGCTTGTAATGAATTG 57.408 30.769 0.00 0.00 0.00 2.32
4560 4846 2.611518 CAAGGAGAAAGCCTAGTCGTG 58.388 52.381 0.00 0.00 37.26 4.35
4603 4890 7.814107 TGAGCTTTTAAAGTGATTTATTGGCAG 59.186 33.333 6.57 0.00 0.00 4.85
4873 5194 6.528321 AGAGAAATAACTAGCTGCATGCATA 58.472 36.000 22.97 10.95 45.94 3.14
4981 5334 1.470051 TAGTCTATCAGTGGCACGCA 58.530 50.000 12.71 2.69 44.14 5.24
5219 5572 0.983378 CTACCCTTCCCCAGACCCTG 60.983 65.000 0.00 0.00 0.00 4.45
5605 5958 5.942236 TGACTCTTTGGAATTCTCAATGAGG 59.058 40.000 29.99 21.43 44.09 3.86
5851 6237 7.771183 AGTTTAGCTGTTGTTCATCAGAAAAA 58.229 30.769 13.07 9.50 35.08 1.94
5852 6238 7.333528 AGTTTAGCTGTTGTTCATCAGAAAA 57.666 32.000 13.07 9.76 35.08 2.29
5853 6239 6.942532 AGTTTAGCTGTTGTTCATCAGAAA 57.057 33.333 13.07 5.01 35.08 2.52
5854 6240 6.942532 AAGTTTAGCTGTTGTTCATCAGAA 57.057 33.333 13.07 0.05 34.02 3.02
5855 6241 8.621532 ATTAAGTTTAGCTGTTGTTCATCAGA 57.378 30.769 13.07 0.00 34.02 3.27
5861 6247 9.331106 GCTCTTAATTAAGTTTAGCTGTTGTTC 57.669 33.333 21.69 0.00 34.93 3.18
5862 6248 8.846211 TGCTCTTAATTAAGTTTAGCTGTTGTT 58.154 29.630 25.68 0.00 33.99 2.83
5863 6249 8.391075 TGCTCTTAATTAAGTTTAGCTGTTGT 57.609 30.769 25.68 0.00 33.99 3.32
5864 6250 9.677567 TTTGCTCTTAATTAAGTTTAGCTGTTG 57.322 29.630 25.68 3.67 33.99 3.33
5868 6254 9.358872 GCATTTTGCTCTTAATTAAGTTTAGCT 57.641 29.630 25.68 11.98 40.96 3.32
5869 6255 8.595533 GGCATTTTGCTCTTAATTAAGTTTAGC 58.404 33.333 21.80 21.80 44.28 3.09
5870 6256 9.638239 TGGCATTTTGCTCTTAATTAAGTTTAG 57.362 29.630 21.69 14.32 44.28 1.85
5871 6257 9.988815 TTGGCATTTTGCTCTTAATTAAGTTTA 57.011 25.926 21.69 8.87 44.28 2.01
5872 6258 8.900983 TTGGCATTTTGCTCTTAATTAAGTTT 57.099 26.923 21.69 1.75 44.28 2.66
5874 6260 9.807649 CTATTGGCATTTTGCTCTTAATTAAGT 57.192 29.630 21.69 1.39 44.28 2.24
5999 6385 2.751166 AGTTGCTAGACGTGCATCTT 57.249 45.000 0.00 0.00 40.34 2.40
6022 6408 0.463620 GCTGTAGCCTCTTCCTCCAG 59.536 60.000 0.00 0.00 34.31 3.86
6343 6757 3.917329 ATGCATGTATGAATGAGCAGC 57.083 42.857 0.00 0.00 35.26 5.25
6425 6839 4.590850 AGACTCCAAAACAAAAGGATGC 57.409 40.909 0.00 0.00 0.00 3.91
6444 6858 2.309162 CCCACCCTCCTATCGAGATAGA 59.691 54.545 18.75 6.82 42.55 1.98
6578 6992 7.883391 TGTTACCAGTTTTGTCCAATAAAGA 57.117 32.000 0.00 0.00 0.00 2.52
6583 6997 6.538945 AACTTGTTACCAGTTTTGTCCAAT 57.461 33.333 0.00 0.00 0.00 3.16
6715 7129 2.533266 TATCGATGGCCTCAAGAAGC 57.467 50.000 8.54 0.00 0.00 3.86
6716 7130 3.806521 CACTTATCGATGGCCTCAAGAAG 59.193 47.826 8.54 2.70 0.00 2.85
6717 7131 3.797039 CACTTATCGATGGCCTCAAGAA 58.203 45.455 8.54 0.00 0.00 2.52
6718 7132 2.483714 GCACTTATCGATGGCCTCAAGA 60.484 50.000 8.54 0.00 0.00 3.02
6719 7133 1.869767 GCACTTATCGATGGCCTCAAG 59.130 52.381 8.54 4.98 0.00 3.02
6720 7134 1.475034 GGCACTTATCGATGGCCTCAA 60.475 52.381 18.92 1.42 41.39 3.02
6721 7135 0.106708 GGCACTTATCGATGGCCTCA 59.893 55.000 18.92 0.00 41.39 3.86
6722 7136 2.919971 GGCACTTATCGATGGCCTC 58.080 57.895 18.92 0.00 41.39 4.70
6724 7138 1.510480 GCAGGCACTTATCGATGGCC 61.510 60.000 18.69 18.69 44.92 5.36
6725 7139 0.533755 AGCAGGCACTTATCGATGGC 60.534 55.000 8.54 5.05 41.52 4.40
6726 7140 1.506493 GAGCAGGCACTTATCGATGG 58.494 55.000 8.54 3.37 34.60 3.51
6727 7141 1.135046 CGAGCAGGCACTTATCGATG 58.865 55.000 8.54 0.00 43.84 3.84
6728 7142 1.000827 CTCGAGCAGGCACTTATCGAT 60.001 52.381 2.16 2.16 46.86 3.59
6729 7143 0.382158 CTCGAGCAGGCACTTATCGA 59.618 55.000 0.00 0.00 46.26 3.59
6730 7144 0.596083 CCTCGAGCAGGCACTTATCG 60.596 60.000 6.99 0.00 42.89 2.92
6731 7145 3.280920 CCTCGAGCAGGCACTTATC 57.719 57.895 6.99 0.00 34.60 1.75
6796 7210 1.137404 GCAGTTGGCACCATTAGCG 59.863 57.895 0.00 0.00 43.97 4.26
6973 7387 9.161629 TGACACTTGTTAATCATGTAGTATTGG 57.838 33.333 0.00 0.00 33.92 3.16
7042 7456 9.469807 CATGGCTTAGTAATCTTCACTAGTTAG 57.530 37.037 0.00 0.00 30.48 2.34
7086 7500 2.354259 CCAAAGAGCTAGAAGCCAGTG 58.646 52.381 0.00 0.00 43.77 3.66
7091 7505 1.090728 GTGGCCAAAGAGCTAGAAGC 58.909 55.000 7.24 0.00 42.84 3.86
7196 7611 2.725203 AAGCTTGCTTACACGGGCGA 62.725 55.000 6.02 0.00 0.00 5.54
7225 7640 1.001293 TGAGCTGCTAGTTGTCACCAG 59.999 52.381 0.15 0.00 0.00 4.00
7335 7753 1.343985 TGGTCCTTAGCATGGCTCCTA 60.344 52.381 0.00 0.00 40.44 2.94
7374 7792 1.076533 CCTCCCATTCGTTGTCGTCG 61.077 60.000 0.00 0.00 38.33 5.12
7381 7799 1.568504 TCTAGCACCTCCCATTCGTT 58.431 50.000 0.00 0.00 0.00 3.85
7464 7888 3.885521 GGCGAGCCAAGATGCTGC 61.886 66.667 9.58 0.00 42.95 5.25
7479 7903 2.620242 CTTGGCACATACATTTTGGGC 58.380 47.619 0.00 0.00 42.89 5.36
7488 7912 1.167851 TTCTGCTGCTTGGCACATAC 58.832 50.000 0.00 0.00 39.30 2.39
7745 8207 0.326595 TCCGCACTTTGCCAGGAATA 59.673 50.000 0.00 0.00 41.12 1.75
7746 8208 0.323725 ATCCGCACTTTGCCAGGAAT 60.324 50.000 0.00 0.00 41.12 3.01
7747 8209 1.074775 ATCCGCACTTTGCCAGGAA 59.925 52.632 0.00 0.00 41.12 3.36
7748 8210 1.675310 CATCCGCACTTTGCCAGGA 60.675 57.895 0.00 0.00 41.12 3.86
7749 8211 1.675310 TCATCCGCACTTTGCCAGG 60.675 57.895 0.00 0.00 41.12 4.45
7750 8212 1.236616 TGTCATCCGCACTTTGCCAG 61.237 55.000 0.00 0.00 41.12 4.85
7788 8250 2.505407 ACATGTCCCATAGCTGTAGCAA 59.495 45.455 6.65 0.00 45.16 3.91
7794 8256 2.697229 TCTCTGACATGTCCCATAGCTG 59.303 50.000 22.85 9.58 0.00 4.24
7847 8311 3.748568 GTCCTTTGTCATCCTGAGTCAAC 59.251 47.826 0.00 0.00 0.00 3.18
7864 8328 1.346722 AGGAATTTCACCGTCGTCCTT 59.653 47.619 0.00 0.00 31.31 3.36
7868 8332 2.536761 TGAAGGAATTTCACCGTCGT 57.463 45.000 0.00 0.00 40.82 4.34
7962 8426 3.666883 TTGCGTGTAAGTGAACAACTG 57.333 42.857 0.00 0.00 39.81 3.16
7975 8439 5.468746 ACACACTAATCACTAATTTGCGTGT 59.531 36.000 0.00 0.00 39.71 4.49
8064 8531 3.787785 TCGTAGTCAACACTCAAGCAAA 58.212 40.909 0.00 0.00 33.62 3.68
8065 8532 3.446310 TCGTAGTCAACACTCAAGCAA 57.554 42.857 0.00 0.00 33.62 3.91
8106 8579 5.709164 GCTATTCCCAGACTCCGTATAACTA 59.291 44.000 0.00 0.00 0.00 2.24
8110 8589 4.108501 TGCTATTCCCAGACTCCGTATA 57.891 45.455 0.00 0.00 0.00 1.47
8114 8593 1.802880 CGTTGCTATTCCCAGACTCCG 60.803 57.143 0.00 0.00 0.00 4.63
8148 8627 7.072961 ACCTCCATGTATATTGGACTTGAGATT 59.927 37.037 3.82 0.00 38.35 2.40
8163 8642 3.405831 CATGCATCGAACCTCCATGTAT 58.594 45.455 0.00 0.00 0.00 2.29
8198 8678 7.250569 TCAACTTTTGCGAATATTCTTCATCC 58.749 34.615 13.45 0.00 0.00 3.51
8215 8695 5.925969 CACAACTCCAACAAACTCAACTTTT 59.074 36.000 0.00 0.00 0.00 2.27
8218 8698 4.079253 ACACAACTCCAACAAACTCAACT 58.921 39.130 0.00 0.00 0.00 3.16
8221 8701 2.675844 CGACACAACTCCAACAAACTCA 59.324 45.455 0.00 0.00 0.00 3.41
8263 8744 8.598202 TCTACTATGTTTCCCAACACTATACA 57.402 34.615 0.00 0.00 45.88 2.29
8264 8745 9.880157 TTTCTACTATGTTTCCCAACACTATAC 57.120 33.333 0.00 0.00 45.88 1.47
8267 8748 8.212312 TGTTTTCTACTATGTTTCCCAACACTA 58.788 33.333 0.00 0.00 45.88 2.74
8271 8752 9.589111 TTTTTGTTTTCTACTATGTTTCCCAAC 57.411 29.630 0.00 0.00 0.00 3.77
8298 8779 5.110814 TGGATGATCGTAGGGTGATTTTT 57.889 39.130 0.00 0.00 0.00 1.94
8299 8780 4.444876 CCTGGATGATCGTAGGGTGATTTT 60.445 45.833 6.50 0.00 0.00 1.82
8300 8781 3.071602 CCTGGATGATCGTAGGGTGATTT 59.928 47.826 6.50 0.00 0.00 2.17
8301 8782 2.634940 CCTGGATGATCGTAGGGTGATT 59.365 50.000 6.50 0.00 0.00 2.57
8302 8783 2.158310 TCCTGGATGATCGTAGGGTGAT 60.158 50.000 12.53 0.00 0.00 3.06
8303 8784 1.216930 TCCTGGATGATCGTAGGGTGA 59.783 52.381 12.53 0.00 0.00 4.02
8304 8785 1.704641 TCCTGGATGATCGTAGGGTG 58.295 55.000 12.53 0.00 0.00 4.61
8305 8786 2.040178 GTTCCTGGATGATCGTAGGGT 58.960 52.381 12.53 0.00 0.00 4.34
8306 8787 2.039418 TGTTCCTGGATGATCGTAGGG 58.961 52.381 12.53 0.14 0.00 3.53
8307 8788 3.819564 TTGTTCCTGGATGATCGTAGG 57.180 47.619 0.00 7.75 0.00 3.18
8308 8789 6.691508 TCATATTGTTCCTGGATGATCGTAG 58.308 40.000 0.00 0.00 0.00 3.51
8309 8790 6.664428 TCATATTGTTCCTGGATGATCGTA 57.336 37.500 0.00 0.00 0.00 3.43
8310 8791 5.551305 TCATATTGTTCCTGGATGATCGT 57.449 39.130 0.00 0.00 0.00 3.73
8311 8792 6.226052 TCTTCATATTGTTCCTGGATGATCG 58.774 40.000 0.00 0.00 0.00 3.69
8312 8793 7.361885 GCATCTTCATATTGTTCCTGGATGATC 60.362 40.741 0.00 0.00 32.47 2.92
8313 8794 6.433404 GCATCTTCATATTGTTCCTGGATGAT 59.567 38.462 0.00 0.00 32.47 2.45
8314 8795 5.766670 GCATCTTCATATTGTTCCTGGATGA 59.233 40.000 0.00 0.00 32.47 2.92
8315 8796 5.533528 TGCATCTTCATATTGTTCCTGGATG 59.466 40.000 0.00 0.00 33.48 3.51
8316 8797 5.698104 TGCATCTTCATATTGTTCCTGGAT 58.302 37.500 0.00 0.00 0.00 3.41
8317 8798 5.114764 TGCATCTTCATATTGTTCCTGGA 57.885 39.130 0.00 0.00 0.00 3.86
8318 8799 7.013559 TGTTATGCATCTTCATATTGTTCCTGG 59.986 37.037 0.19 0.00 0.00 4.45
8319 8800 7.933396 TGTTATGCATCTTCATATTGTTCCTG 58.067 34.615 0.19 0.00 0.00 3.86
8320 8801 7.230108 CCTGTTATGCATCTTCATATTGTTCCT 59.770 37.037 0.19 0.00 0.00 3.36
8321 8802 7.013655 ACCTGTTATGCATCTTCATATTGTTCC 59.986 37.037 0.19 0.00 0.00 3.62
8322 8803 7.934457 ACCTGTTATGCATCTTCATATTGTTC 58.066 34.615 0.19 0.00 0.00 3.18
8323 8804 7.886629 ACCTGTTATGCATCTTCATATTGTT 57.113 32.000 0.19 0.00 0.00 2.83
8324 8805 7.340232 ACAACCTGTTATGCATCTTCATATTGT 59.660 33.333 0.19 10.93 29.43 2.71
8325 8806 7.646526 CACAACCTGTTATGCATCTTCATATTG 59.353 37.037 0.19 10.39 0.00 1.90
8326 8807 7.557358 TCACAACCTGTTATGCATCTTCATATT 59.443 33.333 0.19 0.00 0.00 1.28
8327 8808 7.056006 TCACAACCTGTTATGCATCTTCATAT 58.944 34.615 0.19 0.00 0.00 1.78
8328 8809 6.413892 TCACAACCTGTTATGCATCTTCATA 58.586 36.000 0.19 0.00 0.00 2.15
8329 8810 5.255687 TCACAACCTGTTATGCATCTTCAT 58.744 37.500 0.19 0.00 0.00 2.57
8330 8811 4.650734 TCACAACCTGTTATGCATCTTCA 58.349 39.130 0.19 0.05 0.00 3.02
8331 8812 5.355071 TGATCACAACCTGTTATGCATCTTC 59.645 40.000 0.19 0.00 0.00 2.87
8332 8813 5.255687 TGATCACAACCTGTTATGCATCTT 58.744 37.500 0.19 0.00 0.00 2.40
8333 8814 4.847198 TGATCACAACCTGTTATGCATCT 58.153 39.130 0.19 0.00 0.00 2.90
8334 8815 5.565592 TTGATCACAACCTGTTATGCATC 57.434 39.130 0.19 0.00 0.00 3.91
8335 8816 5.653330 TCATTGATCACAACCTGTTATGCAT 59.347 36.000 3.79 3.79 38.90 3.96
8336 8817 5.008980 TCATTGATCACAACCTGTTATGCA 58.991 37.500 0.00 0.00 38.90 3.96
8337 8818 5.565592 TCATTGATCACAACCTGTTATGC 57.434 39.130 0.00 0.00 38.90 3.14
8338 8819 6.037500 ACGATCATTGATCACAACCTGTTATG 59.962 38.462 22.95 7.40 38.84 1.90
8339 8820 6.115446 ACGATCATTGATCACAACCTGTTAT 58.885 36.000 22.95 0.00 38.84 1.89
8340 8821 5.487433 ACGATCATTGATCACAACCTGTTA 58.513 37.500 22.95 0.00 38.84 2.41
8341 8822 4.326826 ACGATCATTGATCACAACCTGTT 58.673 39.130 22.95 0.00 38.84 3.16
8342 8823 3.942829 ACGATCATTGATCACAACCTGT 58.057 40.909 22.95 10.33 38.84 4.00
8343 8824 4.952262 AACGATCATTGATCACAACCTG 57.048 40.909 22.95 9.79 38.84 4.00
8344 8825 4.876107 GGTAACGATCATTGATCACAACCT 59.124 41.667 22.95 6.09 38.84 3.50
8345 8826 4.634004 TGGTAACGATCATTGATCACAACC 59.366 41.667 22.95 22.65 38.84 3.77
8346 8827 5.794687 TGGTAACGATCATTGATCACAAC 57.205 39.130 22.95 16.49 38.84 3.32
8347 8828 5.937540 AGTTGGTAACGATCATTGATCACAA 59.062 36.000 22.95 16.05 38.84 3.33
8348 8829 5.487433 AGTTGGTAACGATCATTGATCACA 58.513 37.500 22.95 12.10 38.84 3.58
8349 8830 5.006746 GGAGTTGGTAACGATCATTGATCAC 59.993 44.000 22.95 14.70 38.84 3.06
8350 8831 5.116180 GGAGTTGGTAACGATCATTGATCA 58.884 41.667 22.95 4.56 38.84 2.92
8351 8832 4.511826 GGGAGTTGGTAACGATCATTGATC 59.488 45.833 15.38 15.38 42.51 2.92
8352 8833 4.451900 GGGAGTTGGTAACGATCATTGAT 58.548 43.478 0.00 0.00 42.51 2.57
8353 8834 3.677700 CGGGAGTTGGTAACGATCATTGA 60.678 47.826 0.00 0.00 42.51 2.57
8354 8835 2.607635 CGGGAGTTGGTAACGATCATTG 59.392 50.000 0.00 0.00 42.51 2.82
8355 8836 2.419574 CCGGGAGTTGGTAACGATCATT 60.420 50.000 0.00 0.00 42.51 2.57
8356 8837 1.138266 CCGGGAGTTGGTAACGATCAT 59.862 52.381 0.00 0.00 42.51 2.45
8357 8838 0.533491 CCGGGAGTTGGTAACGATCA 59.467 55.000 0.00 0.00 42.51 2.92
8358 8839 0.819582 TCCGGGAGTTGGTAACGATC 59.180 55.000 0.00 0.00 42.51 3.69
8359 8840 0.822164 CTCCGGGAGTTGGTAACGAT 59.178 55.000 16.15 0.00 42.51 3.73
8360 8841 0.540365 ACTCCGGGAGTTGGTAACGA 60.540 55.000 23.90 0.00 40.28 3.85
8361 8842 0.389426 CACTCCGGGAGTTGGTAACG 60.389 60.000 26.78 10.29 41.37 3.18
8362 8843 0.672711 GCACTCCGGGAGTTGGTAAC 60.673 60.000 26.78 8.80 41.37 2.50
8363 8844 1.122632 TGCACTCCGGGAGTTGGTAA 61.123 55.000 26.78 8.26 41.37 2.85
8364 8845 1.534476 TGCACTCCGGGAGTTGGTA 60.534 57.895 26.78 13.54 41.37 3.25
8365 8846 2.847234 TGCACTCCGGGAGTTGGT 60.847 61.111 26.78 3.69 41.37 3.67
8366 8847 2.046892 CTGCACTCCGGGAGTTGG 60.047 66.667 26.78 17.42 41.37 3.77
8367 8848 2.743928 GCTGCACTCCGGGAGTTG 60.744 66.667 26.78 21.06 41.37 3.16
8368 8849 4.379243 CGCTGCACTCCGGGAGTT 62.379 66.667 26.78 9.94 41.37 3.01
8370 8851 3.589654 TTTCGCTGCACTCCGGGAG 62.590 63.158 22.40 22.40 35.52 4.30
8371 8852 3.589654 CTTTCGCTGCACTCCGGGA 62.590 63.158 0.00 0.00 0.00 5.14
8372 8853 2.501223 TACTTTCGCTGCACTCCGGG 62.501 60.000 0.00 0.00 0.00 5.73
8373 8854 1.078759 CTACTTTCGCTGCACTCCGG 61.079 60.000 0.00 0.00 0.00 5.14
8374 8855 0.109272 TCTACTTTCGCTGCACTCCG 60.109 55.000 0.00 0.00 0.00 4.63
8375 8856 1.929836 CATCTACTTTCGCTGCACTCC 59.070 52.381 0.00 0.00 0.00 3.85
8376 8857 2.857152 CTCATCTACTTTCGCTGCACTC 59.143 50.000 0.00 0.00 0.00 3.51
8377 8858 2.232452 ACTCATCTACTTTCGCTGCACT 59.768 45.455 0.00 0.00 0.00 4.40
8378 8859 2.600867 GACTCATCTACTTTCGCTGCAC 59.399 50.000 0.00 0.00 0.00 4.57
8379 8860 2.417379 GGACTCATCTACTTTCGCTGCA 60.417 50.000 0.00 0.00 0.00 4.41
8380 8861 2.197577 GGACTCATCTACTTTCGCTGC 58.802 52.381 0.00 0.00 0.00 5.25
8381 8862 2.159366 ACGGACTCATCTACTTTCGCTG 60.159 50.000 0.00 0.00 0.00 5.18
8382 8863 2.093106 ACGGACTCATCTACTTTCGCT 58.907 47.619 0.00 0.00 0.00 4.93
8383 8864 2.186076 CACGGACTCATCTACTTTCGC 58.814 52.381 0.00 0.00 0.00 4.70
8384 8865 3.489180 ACACGGACTCATCTACTTTCG 57.511 47.619 0.00 0.00 0.00 3.46
8385 8866 5.814764 TCTACACGGACTCATCTACTTTC 57.185 43.478 0.00 0.00 0.00 2.62
8386 8867 5.007823 CGATCTACACGGACTCATCTACTTT 59.992 44.000 0.00 0.00 0.00 2.66
8387 8868 4.512198 CGATCTACACGGACTCATCTACTT 59.488 45.833 0.00 0.00 0.00 2.24
8388 8869 4.059511 CGATCTACACGGACTCATCTACT 58.940 47.826 0.00 0.00 0.00 2.57
8389 8870 4.392619 CGATCTACACGGACTCATCTAC 57.607 50.000 0.00 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.