Multiple sequence alignment - TraesCS2B01G453200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G453200 chr2B 100.000 2324 0 0 1 2324 646976077 646978400 0.000000e+00 4292.0
1 TraesCS2B01G453200 chr2B 87.421 946 102 13 840 1782 786050425 786051356 0.000000e+00 1072.0
2 TraesCS2B01G453200 chr2B 75.000 284 63 5 1602 1883 767657842 767658119 8.720000e-25 124.0
3 TraesCS2B01G453200 chr4D 87.171 1255 129 20 838 2084 386201845 386203075 0.000000e+00 1397.0
4 TraesCS2B01G453200 chr4A 84.724 1270 149 21 832 2097 654800337 654801565 0.000000e+00 1229.0
5 TraesCS2B01G453200 chr4A 75.834 869 191 16 1025 1889 631910259 631909406 7.680000e-115 424.0
6 TraesCS2B01G453200 chr6A 83.449 1148 167 15 857 1999 475900547 475901676 0.000000e+00 1046.0
7 TraesCS2B01G453200 chr6A 74.864 736 167 16 1016 1747 612181377 612182098 3.730000e-83 318.0
8 TraesCS2B01G453200 chr2D 87.367 562 43 16 1 556 541548321 541548860 9.120000e-174 619.0
9 TraesCS2B01G453200 chr2A 84.863 621 32 16 160 764 684910611 684911185 9.320000e-159 569.0
10 TraesCS2B01G453200 chr2A 92.754 138 6 2 1 134 684910479 684910616 1.820000e-46 196.0
11 TraesCS2B01G453200 chr1B 75.694 864 189 17 1031 1889 141767356 141766509 1.660000e-111 412.0
12 TraesCS2B01G453200 chr7A 75.489 869 194 16 1022 1886 126554196 126555049 7.730000e-110 407.0
13 TraesCS2B01G453200 chr3D 75.199 754 169 16 1031 1780 529120257 529119518 7.950000e-90 340.0
14 TraesCS2B01G453200 chr6B 74.211 190 42 6 2137 2324 674970054 674969870 3.200000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G453200 chr2B 646976077 646978400 2323 False 4292.0 4292 100.0000 1 2324 1 chr2B.!!$F1 2323
1 TraesCS2B01G453200 chr2B 786050425 786051356 931 False 1072.0 1072 87.4210 840 1782 1 chr2B.!!$F3 942
2 TraesCS2B01G453200 chr4D 386201845 386203075 1230 False 1397.0 1397 87.1710 838 2084 1 chr4D.!!$F1 1246
3 TraesCS2B01G453200 chr4A 654800337 654801565 1228 False 1229.0 1229 84.7240 832 2097 1 chr4A.!!$F1 1265
4 TraesCS2B01G453200 chr4A 631909406 631910259 853 True 424.0 424 75.8340 1025 1889 1 chr4A.!!$R1 864
5 TraesCS2B01G453200 chr6A 475900547 475901676 1129 False 1046.0 1046 83.4490 857 1999 1 chr6A.!!$F1 1142
6 TraesCS2B01G453200 chr6A 612181377 612182098 721 False 318.0 318 74.8640 1016 1747 1 chr6A.!!$F2 731
7 TraesCS2B01G453200 chr2D 541548321 541548860 539 False 619.0 619 87.3670 1 556 1 chr2D.!!$F1 555
8 TraesCS2B01G453200 chr2A 684910479 684911185 706 False 382.5 569 88.8085 1 764 2 chr2A.!!$F1 763
9 TraesCS2B01G453200 chr1B 141766509 141767356 847 True 412.0 412 75.6940 1031 1889 1 chr1B.!!$R1 858
10 TraesCS2B01G453200 chr7A 126554196 126555049 853 False 407.0 407 75.4890 1022 1886 1 chr7A.!!$F1 864
11 TraesCS2B01G453200 chr3D 529119518 529120257 739 True 340.0 340 75.1990 1031 1780 1 chr3D.!!$R1 749

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
712 737 0.034574 AAGGCATGTACCGGCATTCA 60.035 50.0 0.0 0.0 33.69 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2059 2095 0.111253 CCCACAAGCTGTTTCTCCCT 59.889 55.0 0.0 0.0 0.0 4.2 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 5.452636 GGCATTTGGGTTGTTTGAAGACTTA 60.453 40.000 0.00 0.00 0.00 2.24
144 151 4.641541 CCATCTCTGTCCACAATTTGCATA 59.358 41.667 0.00 0.00 0.00 3.14
148 155 6.413892 TCTCTGTCCACAATTTGCATATACA 58.586 36.000 0.00 0.00 0.00 2.29
253 261 8.602328 TGATTTGCAGTAGAAAACAAAATGTTG 58.398 29.630 0.00 0.00 40.14 3.33
269 277 7.544217 ACAAAATGTTGTTTTCGCTTTCTACTT 59.456 29.630 0.00 0.00 46.01 2.24
281 289 3.440872 GCTTTCTACTTGAGGAGTCGAGA 59.559 47.826 0.00 0.00 39.86 4.04
301 309 9.993881 GTCGAGATGATTATTGTTTTTGTTTTG 57.006 29.630 0.00 0.00 0.00 2.44
302 310 9.743057 TCGAGATGATTATTGTTTTTGTTTTGT 57.257 25.926 0.00 0.00 0.00 2.83
364 372 9.502145 AACATGTATGATGTTTTTACGCATAAG 57.498 29.630 0.00 0.00 38.97 1.73
414 422 9.739276 ACTGGAAGAGAAATTTATATGACACAA 57.261 29.630 0.00 0.00 37.43 3.33
503 511 6.152323 GTGAGGACATAAAGGTCTACTGTACA 59.848 42.308 0.00 0.00 37.91 2.90
534 542 4.826248 TGCAGCCAAGCAAGATCA 57.174 50.000 0.00 0.00 42.46 2.92
535 543 3.276281 TGCAGCCAAGCAAGATCAT 57.724 47.368 0.00 0.00 42.46 2.45
536 544 0.815095 TGCAGCCAAGCAAGATCATG 59.185 50.000 0.00 0.00 42.46 3.07
559 583 5.700373 TGCCATTTGAGAAAATAAAAGTGGC 59.300 36.000 12.27 12.27 46.34 5.01
609 633 5.715070 TGAAATGGGGCAAATAAAAGTACG 58.285 37.500 0.00 0.00 0.00 3.67
647 672 6.491745 TCATAAAACTGTGCATTTTAGGGTCA 59.508 34.615 12.96 0.00 35.54 4.02
648 673 4.853924 AAACTGTGCATTTTAGGGTCAG 57.146 40.909 0.00 0.00 0.00 3.51
656 681 3.758554 GCATTTTAGGGTCAGAGCAGAAA 59.241 43.478 1.20 0.00 0.00 2.52
658 683 4.974645 TTTTAGGGTCAGAGCAGAAAGA 57.025 40.909 1.20 0.00 0.00 2.52
670 695 3.815401 GAGCAGAAAGAGCCTTGTTGTAA 59.185 43.478 0.00 0.00 0.00 2.41
671 696 4.401925 AGCAGAAAGAGCCTTGTTGTAAT 58.598 39.130 0.00 0.00 0.00 1.89
701 726 2.559785 CCAGCGAAAGAAGGCATGT 58.440 52.632 0.00 0.00 0.00 3.21
710 735 0.255890 AGAAGGCATGTACCGGCATT 59.744 50.000 0.00 5.59 36.65 3.56
712 737 0.034574 AAGGCATGTACCGGCATTCA 60.035 50.000 0.00 0.00 33.69 2.57
715 740 1.001378 GGCATGTACCGGCATTCAATC 60.001 52.381 0.00 0.00 0.00 2.67
721 746 6.559810 CATGTACCGGCATTCAATCTTTTTA 58.440 36.000 0.00 0.00 0.00 1.52
724 749 7.434492 TGTACCGGCATTCAATCTTTTTAAAA 58.566 30.769 0.00 0.00 0.00 1.52
725 750 7.926555 TGTACCGGCATTCAATCTTTTTAAAAA 59.073 29.630 12.62 12.62 0.00 1.94
764 789 1.960417 TTGTGCGTGTCATCCTTGAA 58.040 45.000 0.00 0.00 32.48 2.69
765 790 1.511850 TGTGCGTGTCATCCTTGAAG 58.488 50.000 0.00 0.00 32.48 3.02
766 791 0.166814 GTGCGTGTCATCCTTGAAGC 59.833 55.000 0.00 0.00 32.48 3.86
767 792 1.291184 TGCGTGTCATCCTTGAAGCG 61.291 55.000 0.00 0.00 34.01 4.68
768 793 1.970917 GCGTGTCATCCTTGAAGCGG 61.971 60.000 0.00 0.00 34.11 5.52
769 794 0.670546 CGTGTCATCCTTGAAGCGGT 60.671 55.000 0.00 0.00 32.48 5.68
770 795 1.079503 GTGTCATCCTTGAAGCGGTC 58.920 55.000 0.00 0.00 32.48 4.79
771 796 0.684535 TGTCATCCTTGAAGCGGTCA 59.315 50.000 0.00 0.00 32.48 4.02
772 797 1.278985 TGTCATCCTTGAAGCGGTCAT 59.721 47.619 0.00 0.00 35.70 3.06
773 798 2.499693 TGTCATCCTTGAAGCGGTCATA 59.500 45.455 0.00 0.00 35.70 2.15
774 799 3.126831 GTCATCCTTGAAGCGGTCATAG 58.873 50.000 0.00 0.00 35.70 2.23
775 800 2.766263 TCATCCTTGAAGCGGTCATAGT 59.234 45.455 0.00 0.00 35.70 2.12
776 801 3.958147 TCATCCTTGAAGCGGTCATAGTA 59.042 43.478 0.00 0.00 35.70 1.82
777 802 4.038042 TCATCCTTGAAGCGGTCATAGTAG 59.962 45.833 0.00 0.00 35.70 2.57
778 803 2.100916 TCCTTGAAGCGGTCATAGTAGC 59.899 50.000 0.00 0.00 35.70 3.58
779 804 2.159099 CCTTGAAGCGGTCATAGTAGCA 60.159 50.000 0.00 0.00 35.70 3.49
780 805 2.871182 TGAAGCGGTCATAGTAGCAG 57.129 50.000 0.00 0.00 0.00 4.24
781 806 1.409064 TGAAGCGGTCATAGTAGCAGG 59.591 52.381 0.00 0.00 0.00 4.85
782 807 1.409427 GAAGCGGTCATAGTAGCAGGT 59.591 52.381 0.00 0.00 0.00 4.00
783 808 2.359981 AGCGGTCATAGTAGCAGGTA 57.640 50.000 0.00 0.00 0.00 3.08
784 809 2.231529 AGCGGTCATAGTAGCAGGTAG 58.768 52.381 0.00 0.00 0.00 3.18
785 810 2.158652 AGCGGTCATAGTAGCAGGTAGA 60.159 50.000 0.00 0.00 0.00 2.59
786 811 2.621998 GCGGTCATAGTAGCAGGTAGAA 59.378 50.000 0.00 0.00 0.00 2.10
787 812 3.256136 GCGGTCATAGTAGCAGGTAGAAT 59.744 47.826 0.00 0.00 0.00 2.40
788 813 4.458295 GCGGTCATAGTAGCAGGTAGAATA 59.542 45.833 0.00 0.00 0.00 1.75
789 814 5.125739 GCGGTCATAGTAGCAGGTAGAATAT 59.874 44.000 0.00 0.00 0.00 1.28
790 815 6.556212 CGGTCATAGTAGCAGGTAGAATATG 58.444 44.000 0.00 0.00 0.00 1.78
791 816 6.151312 CGGTCATAGTAGCAGGTAGAATATGT 59.849 42.308 0.00 0.00 0.00 2.29
792 817 7.336176 CGGTCATAGTAGCAGGTAGAATATGTA 59.664 40.741 0.00 0.00 0.00 2.29
793 818 9.191479 GGTCATAGTAGCAGGTAGAATATGTAT 57.809 37.037 0.00 0.00 0.00 2.29
804 829 6.834133 GTAGAATATGTATCTACACGCGTG 57.166 41.667 35.99 35.99 45.52 5.34
805 830 4.795268 AGAATATGTATCTACACGCGTGG 58.205 43.478 39.21 24.50 39.30 4.94
806 831 4.277672 AGAATATGTATCTACACGCGTGGT 59.722 41.667 39.21 26.98 39.30 4.16
817 842 3.854459 GCGTGGTGCTAGCGCTTC 61.854 66.667 26.36 17.83 46.55 3.86
818 843 3.188786 CGTGGTGCTAGCGCTTCC 61.189 66.667 26.36 17.28 36.97 3.46
819 844 2.820037 GTGGTGCTAGCGCTTCCC 60.820 66.667 26.36 11.36 36.97 3.97
820 845 3.318384 TGGTGCTAGCGCTTCCCA 61.318 61.111 26.36 14.07 36.97 4.37
821 846 2.190578 GGTGCTAGCGCTTCCCAT 59.809 61.111 26.36 0.00 36.97 4.00
822 847 1.889573 GGTGCTAGCGCTTCCCATC 60.890 63.158 26.36 7.23 36.97 3.51
823 848 1.144936 GTGCTAGCGCTTCCCATCT 59.855 57.895 18.68 0.00 36.97 2.90
824 849 1.144716 TGCTAGCGCTTCCCATCTG 59.855 57.895 18.68 0.00 36.97 2.90
825 850 1.144936 GCTAGCGCTTCCCATCTGT 59.855 57.895 18.68 0.00 0.00 3.41
826 851 0.462759 GCTAGCGCTTCCCATCTGTT 60.463 55.000 18.68 0.00 0.00 3.16
827 852 2.014068 GCTAGCGCTTCCCATCTGTTT 61.014 52.381 18.68 0.00 0.00 2.83
828 853 1.936547 CTAGCGCTTCCCATCTGTTTC 59.063 52.381 18.68 0.00 0.00 2.78
829 854 0.678048 AGCGCTTCCCATCTGTTTCC 60.678 55.000 2.64 0.00 0.00 3.13
830 855 1.982073 GCGCTTCCCATCTGTTTCCG 61.982 60.000 0.00 0.00 0.00 4.30
831 856 1.803289 GCTTCCCATCTGTTTCCGC 59.197 57.895 0.00 0.00 0.00 5.54
832 857 0.960364 GCTTCCCATCTGTTTCCGCA 60.960 55.000 0.00 0.00 0.00 5.69
833 858 1.533625 CTTCCCATCTGTTTCCGCAA 58.466 50.000 0.00 0.00 0.00 4.85
834 859 1.200020 CTTCCCATCTGTTTCCGCAAC 59.800 52.381 0.00 0.00 35.71 4.17
835 860 0.400213 TCCCATCTGTTTCCGCAACT 59.600 50.000 0.00 0.00 36.21 3.16
836 861 0.804989 CCCATCTGTTTCCGCAACTC 59.195 55.000 0.00 0.00 36.21 3.01
837 862 1.611673 CCCATCTGTTTCCGCAACTCT 60.612 52.381 0.00 0.00 36.21 3.24
838 863 1.734465 CCATCTGTTTCCGCAACTCTC 59.266 52.381 0.00 0.00 36.21 3.20
902 930 1.149148 GCCGCCGGAATTTATCTCTC 58.851 55.000 7.68 0.00 0.00 3.20
912 940 0.750249 TTTATCTCTCATCGGCGCCA 59.250 50.000 28.98 14.46 0.00 5.69
928 956 2.108566 CATCTCTCCGCCAGGCTG 59.891 66.667 10.54 7.75 37.47 4.85
929 957 2.042537 ATCTCTCCGCCAGGCTGA 60.043 61.111 17.94 7.76 37.47 4.26
930 958 1.459158 ATCTCTCCGCCAGGCTGAT 60.459 57.895 17.94 2.67 37.47 2.90
997 1029 1.528292 GACGGGAGATCGGATCTGGG 61.528 65.000 24.43 14.69 40.38 4.45
1014 1046 0.034670 GGGAGATGGCAGCAAGTTCT 60.035 55.000 5.19 0.00 0.00 3.01
1029 1061 0.388134 GTTCTAGCACGCAAGGACGA 60.388 55.000 0.00 0.00 46.39 4.20
1060 1092 3.397482 GAGACTGCAGATGAGTTGTTGT 58.603 45.455 23.35 0.00 0.00 3.32
1086 1118 2.686118 GCTGAATTTGCAGGAGGAGGAT 60.686 50.000 0.00 0.00 36.41 3.24
1290 1325 2.915869 ACCCAGTTTGGATGTCTAGGA 58.084 47.619 0.00 0.00 40.96 2.94
1322 1357 0.623723 GCAATGTTGGAGGGACCCTA 59.376 55.000 14.87 0.00 38.00 3.53
1339 1374 4.036518 ACCCTAGCTGTTCAGAGATCATT 58.963 43.478 0.00 0.00 0.00 2.57
1355 1390 7.332926 CAGAGATCATTCGGTAATTATGAAGGG 59.667 40.741 12.27 6.78 32.54 3.95
1387 1422 0.390472 CAAGAAGCCCGAGAGTGTCC 60.390 60.000 0.00 0.00 0.00 4.02
1429 1464 4.710865 TCTGTGCTCAGATTCATCTTCTCT 59.289 41.667 14.30 0.00 44.58 3.10
1447 1483 5.521906 TCTCTCGGACAATTTCTGATAGG 57.478 43.478 9.70 0.00 39.04 2.57
1449 1485 5.835819 TCTCTCGGACAATTTCTGATAGGAT 59.164 40.000 9.70 0.00 39.04 3.24
1454 1490 3.393800 ACAATTTCTGATAGGATCGGCG 58.606 45.455 0.00 0.00 35.60 6.46
1475 1511 2.610859 AGGGGGTTGGCATCTCGT 60.611 61.111 0.00 0.00 0.00 4.18
1494 1530 2.478292 GTATTGGGGAAGTGGAGGAGA 58.522 52.381 0.00 0.00 0.00 3.71
1527 1563 1.530655 CCGGCAGGTTTCTTTGGGT 60.531 57.895 0.00 0.00 0.00 4.51
1552 1588 2.432874 TCGTCAGGGTCAGAGTGAAAAA 59.567 45.455 0.00 0.00 0.00 1.94
1553 1589 2.544267 CGTCAGGGTCAGAGTGAAAAAC 59.456 50.000 0.00 0.00 0.00 2.43
1594 1630 9.713684 AGATAAAACATTTCATTATGGGGAAGA 57.286 29.630 0.00 0.00 0.00 2.87
1600 1636 3.971468 TCATTATGGGGAAGAAAGGGG 57.029 47.619 0.00 0.00 0.00 4.79
1609 1645 2.557676 GGGAAGAAAGGGGAAGAAAGGG 60.558 54.545 0.00 0.00 0.00 3.95
1618 1654 2.378886 GGGGAAGAAAGGGGAAGAAAGA 59.621 50.000 0.00 0.00 0.00 2.52
1662 1698 6.790232 TGAGAAACTCCCAATCTTTTGTTT 57.210 33.333 0.00 0.00 0.00 2.83
1670 1706 6.098266 ACTCCCAATCTTTTGTTTTAACTGCT 59.902 34.615 0.00 0.00 0.00 4.24
1739 1775 3.075882 TGAGTCCACTTTTGAATGGGGAT 59.924 43.478 4.18 0.00 37.87 3.85
1846 1882 2.246874 AGGGGGACGAGGAAGAGGA 61.247 63.158 0.00 0.00 0.00 3.71
1847 1883 1.758906 GGGGGACGAGGAAGAGGAG 60.759 68.421 0.00 0.00 0.00 3.69
1848 1884 1.758906 GGGGACGAGGAAGAGGAGG 60.759 68.421 0.00 0.00 0.00 4.30
1880 1916 1.418334 ATCCTAATCAGAGCTGGCGT 58.582 50.000 0.00 0.00 0.00 5.68
1912 1948 3.565482 CAGCAACAGAACCAACACTATGT 59.435 43.478 0.00 0.00 0.00 2.29
1914 1950 3.363970 GCAACAGAACCAACACTATGTCG 60.364 47.826 0.00 0.00 0.00 4.35
1919 1955 1.813753 CCAACACTATGTCGGGGCG 60.814 63.158 0.00 0.00 0.00 6.13
1923 1959 3.849951 ACTATGTCGGGGCGCCAG 61.850 66.667 30.85 21.77 0.00 4.85
1938 1974 1.001487 CGCCAGCAAATGAAGTGACAA 60.001 47.619 0.00 0.00 0.00 3.18
1948 1984 0.591659 GAAGTGACAAAACCGGGAGC 59.408 55.000 6.32 0.00 0.00 4.70
1951 1987 1.301401 TGACAAAACCGGGAGCTCG 60.301 57.895 6.32 0.00 0.00 5.03
1973 2009 1.131638 TTGTGACAGTGGAGAAGCCT 58.868 50.000 0.00 0.00 37.63 4.58
1992 2028 3.691603 GCCTAGTGGTGATCTAGAAGGGA 60.692 52.174 0.00 0.00 37.62 4.20
1999 2035 3.964031 GGTGATCTAGAAGGGACAGATGT 59.036 47.826 0.00 0.00 0.00 3.06
2000 2036 4.038642 GGTGATCTAGAAGGGACAGATGTC 59.961 50.000 4.33 4.33 44.04 3.06
2001 2037 4.646945 GTGATCTAGAAGGGACAGATGTCA 59.353 45.833 14.52 0.00 46.47 3.58
2002 2038 4.892345 TGATCTAGAAGGGACAGATGTCAG 59.108 45.833 14.52 2.88 46.47 3.51
2003 2039 4.592997 TCTAGAAGGGACAGATGTCAGA 57.407 45.455 14.52 5.07 46.47 3.27
2004 2040 5.136068 TCTAGAAGGGACAGATGTCAGAT 57.864 43.478 14.52 0.00 46.47 2.90
2005 2041 4.892345 TCTAGAAGGGACAGATGTCAGATG 59.108 45.833 14.52 0.00 46.47 2.90
2006 2042 2.770802 AGAAGGGACAGATGTCAGATGG 59.229 50.000 14.52 0.00 46.47 3.51
2007 2043 1.504912 AGGGACAGATGTCAGATGGG 58.495 55.000 14.52 0.00 46.47 4.00
2029 2065 4.201980 GGAACCTAGCAAAGAACAAACGTT 60.202 41.667 0.00 0.00 0.00 3.99
2058 2094 2.120232 GAACATCTATCCAGCACGTCG 58.880 52.381 0.00 0.00 0.00 5.12
2059 2095 1.389555 ACATCTATCCAGCACGTCGA 58.610 50.000 0.00 0.00 0.00 4.20
2060 2096 1.335182 ACATCTATCCAGCACGTCGAG 59.665 52.381 0.00 0.00 0.00 4.04
2070 2106 1.009389 GCACGTCGAGGGAGAAACAG 61.009 60.000 10.27 0.00 0.00 3.16
2071 2107 1.009389 CACGTCGAGGGAGAAACAGC 61.009 60.000 10.27 0.00 0.00 4.40
2084 2120 0.886490 AAACAGCTTGTGGGCGAGAG 60.886 55.000 0.00 0.00 37.29 3.20
2101 2137 5.058149 CGAGAGCACAGATGATTATAGCT 57.942 43.478 0.00 0.00 0.00 3.32
2102 2138 5.094812 CGAGAGCACAGATGATTATAGCTC 58.905 45.833 0.00 0.00 45.32 4.09
2103 2139 5.404466 AGAGCACAGATGATTATAGCTCC 57.596 43.478 0.00 0.00 45.93 4.70
2104 2140 4.837298 AGAGCACAGATGATTATAGCTCCA 59.163 41.667 0.00 0.00 45.93 3.86
2105 2141 4.892433 AGCACAGATGATTATAGCTCCAC 58.108 43.478 0.00 0.00 0.00 4.02
2106 2142 4.346127 AGCACAGATGATTATAGCTCCACA 59.654 41.667 0.00 0.00 0.00 4.17
2107 2143 4.689812 GCACAGATGATTATAGCTCCACAG 59.310 45.833 0.00 0.00 0.00 3.66
2116 2152 2.125753 GCTCCACAGCTCTGACGG 60.126 66.667 3.60 4.12 43.09 4.79
2117 2153 2.936912 GCTCCACAGCTCTGACGGT 61.937 63.158 3.60 0.00 43.09 4.83
2118 2154 1.595993 GCTCCACAGCTCTGACGGTA 61.596 60.000 3.60 0.00 43.09 4.02
2119 2155 0.888619 CTCCACAGCTCTGACGGTAA 59.111 55.000 3.60 0.00 0.00 2.85
2120 2156 1.478510 CTCCACAGCTCTGACGGTAAT 59.521 52.381 3.60 0.00 0.00 1.89
2121 2157 1.204704 TCCACAGCTCTGACGGTAATG 59.795 52.381 3.60 0.00 0.00 1.90
2122 2158 1.645034 CACAGCTCTGACGGTAATGG 58.355 55.000 3.60 0.00 0.00 3.16
2123 2159 1.204704 CACAGCTCTGACGGTAATGGA 59.795 52.381 3.60 0.00 0.00 3.41
2124 2160 1.478510 ACAGCTCTGACGGTAATGGAG 59.521 52.381 3.60 0.00 0.00 3.86
2125 2161 1.751351 CAGCTCTGACGGTAATGGAGA 59.249 52.381 0.00 0.00 0.00 3.71
2126 2162 2.166459 CAGCTCTGACGGTAATGGAGAA 59.834 50.000 0.00 0.00 0.00 2.87
2127 2163 2.428890 AGCTCTGACGGTAATGGAGAAG 59.571 50.000 0.00 0.00 0.00 2.85
2128 2164 2.815478 CTCTGACGGTAATGGAGAAGC 58.185 52.381 0.00 0.00 0.00 3.86
2129 2165 1.480954 TCTGACGGTAATGGAGAAGCC 59.519 52.381 0.00 0.00 37.10 4.35
2130 2166 0.539986 TGACGGTAATGGAGAAGCCC 59.460 55.000 0.00 0.00 34.97 5.19
2131 2167 0.539986 GACGGTAATGGAGAAGCCCA 59.460 55.000 0.00 0.00 41.05 5.36
2132 2168 0.252197 ACGGTAATGGAGAAGCCCAC 59.748 55.000 0.00 0.00 39.34 4.61
2133 2169 0.251916 CGGTAATGGAGAAGCCCACA 59.748 55.000 0.00 0.00 39.34 4.17
2134 2170 1.743772 CGGTAATGGAGAAGCCCACAG 60.744 57.143 0.00 0.00 39.34 3.66
2135 2171 1.408822 GGTAATGGAGAAGCCCACAGG 60.409 57.143 0.00 0.00 39.34 4.00
2159 2195 4.435970 TCCGCTGCCTCCGGTCTA 62.436 66.667 0.00 0.00 45.71 2.59
2160 2196 3.227276 CCGCTGCCTCCGGTCTAT 61.227 66.667 0.00 0.00 40.84 1.98
2161 2197 2.028190 CGCTGCCTCCGGTCTATG 59.972 66.667 0.00 0.00 0.00 2.23
2162 2198 2.786495 CGCTGCCTCCGGTCTATGT 61.786 63.158 0.00 0.00 0.00 2.29
2163 2199 1.522569 GCTGCCTCCGGTCTATGTT 59.477 57.895 0.00 0.00 0.00 2.71
2164 2200 0.107654 GCTGCCTCCGGTCTATGTTT 60.108 55.000 0.00 0.00 0.00 2.83
2165 2201 1.941325 CTGCCTCCGGTCTATGTTTC 58.059 55.000 0.00 0.00 0.00 2.78
2166 2202 1.482593 CTGCCTCCGGTCTATGTTTCT 59.517 52.381 0.00 0.00 0.00 2.52
2167 2203 1.480954 TGCCTCCGGTCTATGTTTCTC 59.519 52.381 0.00 0.00 0.00 2.87
2168 2204 1.202545 GCCTCCGGTCTATGTTTCTCC 60.203 57.143 0.00 0.00 0.00 3.71
2169 2205 2.108168 CCTCCGGTCTATGTTTCTCCA 58.892 52.381 0.00 0.00 0.00 3.86
2170 2206 2.500098 CCTCCGGTCTATGTTTCTCCAA 59.500 50.000 0.00 0.00 0.00 3.53
2171 2207 3.430929 CCTCCGGTCTATGTTTCTCCAAG 60.431 52.174 0.00 0.00 0.00 3.61
2172 2208 2.500098 TCCGGTCTATGTTTCTCCAAGG 59.500 50.000 0.00 0.00 0.00 3.61
2173 2209 2.500098 CCGGTCTATGTTTCTCCAAGGA 59.500 50.000 0.00 0.00 0.00 3.36
2174 2210 3.055385 CCGGTCTATGTTTCTCCAAGGAA 60.055 47.826 0.00 0.00 0.00 3.36
2175 2211 4.564821 CCGGTCTATGTTTCTCCAAGGAAA 60.565 45.833 0.00 0.00 33.47 3.13
2176 2212 4.631813 CGGTCTATGTTTCTCCAAGGAAAG 59.368 45.833 0.00 0.00 36.12 2.62
2177 2213 5.568825 CGGTCTATGTTTCTCCAAGGAAAGA 60.569 44.000 0.00 0.00 36.12 2.52
2178 2214 5.877564 GGTCTATGTTTCTCCAAGGAAAGAG 59.122 44.000 0.00 0.00 36.12 2.85
2179 2215 5.877564 GTCTATGTTTCTCCAAGGAAAGAGG 59.122 44.000 0.00 0.00 36.12 3.69
2180 2216 4.731313 ATGTTTCTCCAAGGAAAGAGGT 57.269 40.909 0.00 0.00 36.12 3.85
2181 2217 3.820557 TGTTTCTCCAAGGAAAGAGGTG 58.179 45.455 0.00 0.00 36.12 4.00
2182 2218 3.458118 TGTTTCTCCAAGGAAAGAGGTGA 59.542 43.478 0.00 0.00 36.12 4.02
2183 2219 4.080015 TGTTTCTCCAAGGAAAGAGGTGAA 60.080 41.667 0.00 0.00 36.12 3.18
2184 2220 4.357918 TTCTCCAAGGAAAGAGGTGAAG 57.642 45.455 0.00 0.00 32.82 3.02
2185 2221 3.587498 TCTCCAAGGAAAGAGGTGAAGA 58.413 45.455 0.00 0.00 0.00 2.87
2186 2222 3.580458 TCTCCAAGGAAAGAGGTGAAGAG 59.420 47.826 0.00 0.00 0.00 2.85
2187 2223 3.318313 TCCAAGGAAAGAGGTGAAGAGT 58.682 45.455 0.00 0.00 0.00 3.24
2188 2224 3.325135 TCCAAGGAAAGAGGTGAAGAGTC 59.675 47.826 0.00 0.00 0.00 3.36
2189 2225 3.558109 CCAAGGAAAGAGGTGAAGAGTCC 60.558 52.174 0.00 0.00 0.00 3.85
2190 2226 3.268034 AGGAAAGAGGTGAAGAGTCCT 57.732 47.619 0.00 0.00 36.70 3.85
2191 2227 4.405756 AGGAAAGAGGTGAAGAGTCCTA 57.594 45.455 0.00 0.00 32.24 2.94
2192 2228 4.753186 AGGAAAGAGGTGAAGAGTCCTAA 58.247 43.478 0.00 0.00 32.24 2.69
2193 2229 4.775253 AGGAAAGAGGTGAAGAGTCCTAAG 59.225 45.833 0.00 0.00 32.24 2.18
2194 2230 4.773149 GGAAAGAGGTGAAGAGTCCTAAGA 59.227 45.833 0.00 0.00 33.83 2.10
2195 2231 5.246429 GGAAAGAGGTGAAGAGTCCTAAGAA 59.754 44.000 0.00 0.00 33.83 2.52
2196 2232 5.993748 AAGAGGTGAAGAGTCCTAAGAAG 57.006 43.478 0.00 0.00 33.83 2.85
2197 2233 4.349365 AGAGGTGAAGAGTCCTAAGAAGG 58.651 47.826 0.00 0.00 45.21 3.46
2198 2234 3.445987 AGGTGAAGAGTCCTAAGAAGGG 58.554 50.000 0.00 0.00 43.84 3.95
2199 2235 2.502130 GGTGAAGAGTCCTAAGAAGGGG 59.498 54.545 0.00 0.00 43.84 4.79
2200 2236 2.502130 GTGAAGAGTCCTAAGAAGGGGG 59.498 54.545 0.00 0.00 43.84 5.40
2201 2237 2.385765 TGAAGAGTCCTAAGAAGGGGGA 59.614 50.000 0.00 0.00 43.84 4.81
2202 2238 3.014110 TGAAGAGTCCTAAGAAGGGGGAT 59.986 47.826 0.00 0.00 43.84 3.85
2203 2239 3.053359 AGAGTCCTAAGAAGGGGGATG 57.947 52.381 0.00 0.00 43.84 3.51
2204 2240 2.050918 GAGTCCTAAGAAGGGGGATGG 58.949 57.143 0.00 0.00 43.84 3.51
2205 2241 1.369983 AGTCCTAAGAAGGGGGATGGT 59.630 52.381 0.00 0.00 43.84 3.55
2206 2242 2.595380 AGTCCTAAGAAGGGGGATGGTA 59.405 50.000 0.00 0.00 43.84 3.25
2207 2243 3.014807 AGTCCTAAGAAGGGGGATGGTAA 59.985 47.826 0.00 0.00 43.84 2.85
2208 2244 3.981375 GTCCTAAGAAGGGGGATGGTAAT 59.019 47.826 0.00 0.00 43.84 1.89
2209 2245 5.102346 AGTCCTAAGAAGGGGGATGGTAATA 60.102 44.000 0.00 0.00 43.84 0.98
2210 2246 5.248705 GTCCTAAGAAGGGGGATGGTAATAG 59.751 48.000 0.00 0.00 43.84 1.73
2211 2247 5.138996 TCCTAAGAAGGGGGATGGTAATAGA 59.861 44.000 0.00 0.00 43.84 1.98
2212 2248 5.485708 CCTAAGAAGGGGGATGGTAATAGAG 59.514 48.000 0.00 0.00 39.48 2.43
2213 2249 4.852991 AGAAGGGGGATGGTAATAGAGA 57.147 45.455 0.00 0.00 0.00 3.10
2214 2250 5.171541 AGAAGGGGGATGGTAATAGAGAA 57.828 43.478 0.00 0.00 0.00 2.87
2215 2251 5.158889 AGAAGGGGGATGGTAATAGAGAAG 58.841 45.833 0.00 0.00 0.00 2.85
2216 2252 3.252351 AGGGGGATGGTAATAGAGAAGC 58.748 50.000 0.00 0.00 0.00 3.86
2217 2253 3.116159 AGGGGGATGGTAATAGAGAAGCT 60.116 47.826 0.00 0.00 0.00 3.74
2218 2254 3.653352 GGGGGATGGTAATAGAGAAGCTT 59.347 47.826 0.00 0.00 0.00 3.74
2219 2255 4.104897 GGGGGATGGTAATAGAGAAGCTTT 59.895 45.833 0.00 0.00 0.00 3.51
2220 2256 5.066593 GGGGATGGTAATAGAGAAGCTTTG 58.933 45.833 0.00 0.00 0.00 2.77
2221 2257 5.398012 GGGGATGGTAATAGAGAAGCTTTGT 60.398 44.000 0.00 0.00 0.00 2.83
2222 2258 6.122964 GGGATGGTAATAGAGAAGCTTTGTT 58.877 40.000 0.00 0.00 0.00 2.83
2223 2259 6.261158 GGGATGGTAATAGAGAAGCTTTGTTC 59.739 42.308 0.00 0.00 0.00 3.18
2224 2260 6.261158 GGATGGTAATAGAGAAGCTTTGTTCC 59.739 42.308 0.00 0.00 0.00 3.62
2225 2261 6.121776 TGGTAATAGAGAAGCTTTGTTCCA 57.878 37.500 0.00 0.00 0.00 3.53
2226 2262 6.173339 TGGTAATAGAGAAGCTTTGTTCCAG 58.827 40.000 0.00 0.00 0.00 3.86
2227 2263 5.586643 GGTAATAGAGAAGCTTTGTTCCAGG 59.413 44.000 0.00 0.00 0.00 4.45
2228 2264 5.505181 AATAGAGAAGCTTTGTTCCAGGA 57.495 39.130 0.00 0.00 0.00 3.86
2229 2265 3.415457 AGAGAAGCTTTGTTCCAGGAG 57.585 47.619 0.00 0.00 0.00 3.69
2230 2266 1.809547 GAGAAGCTTTGTTCCAGGAGC 59.190 52.381 0.00 0.00 35.42 4.70
2231 2267 0.884514 GAAGCTTTGTTCCAGGAGCC 59.115 55.000 0.00 0.00 35.79 4.70
2232 2268 0.185901 AAGCTTTGTTCCAGGAGCCA 59.814 50.000 0.00 0.00 35.79 4.75
2233 2269 0.185901 AGCTTTGTTCCAGGAGCCAA 59.814 50.000 0.00 0.27 35.79 4.52
2234 2270 0.315251 GCTTTGTTCCAGGAGCCAAC 59.685 55.000 0.00 0.00 0.00 3.77
2235 2271 0.593128 CTTTGTTCCAGGAGCCAACG 59.407 55.000 0.00 0.00 0.00 4.10
2236 2272 0.821711 TTTGTTCCAGGAGCCAACGG 60.822 55.000 0.00 0.00 0.00 4.44
2247 2283 2.755929 GCCAACGGCTACAGAAGAG 58.244 57.895 0.00 0.00 46.69 2.85
2248 2284 0.246635 GCCAACGGCTACAGAAGAGA 59.753 55.000 0.00 0.00 46.69 3.10
2249 2285 1.134670 GCCAACGGCTACAGAAGAGAT 60.135 52.381 0.00 0.00 46.69 2.75
2250 2286 2.544685 CCAACGGCTACAGAAGAGATG 58.455 52.381 0.00 0.00 0.00 2.90
2251 2287 2.166459 CCAACGGCTACAGAAGAGATGA 59.834 50.000 0.00 0.00 0.00 2.92
2252 2288 3.182967 CAACGGCTACAGAAGAGATGAC 58.817 50.000 0.00 0.00 0.00 3.06
2253 2289 1.402259 ACGGCTACAGAAGAGATGACG 59.598 52.381 0.00 0.00 0.00 4.35
2254 2290 1.268794 CGGCTACAGAAGAGATGACGG 60.269 57.143 0.00 0.00 0.00 4.79
2255 2291 1.751924 GGCTACAGAAGAGATGACGGT 59.248 52.381 0.00 0.00 0.00 4.83
2256 2292 2.223618 GGCTACAGAAGAGATGACGGTC 60.224 54.545 0.00 0.00 0.00 4.79
2257 2293 2.423892 GCTACAGAAGAGATGACGGTCA 59.576 50.000 14.01 14.01 0.00 4.02
2258 2294 3.119459 GCTACAGAAGAGATGACGGTCAA 60.119 47.826 15.72 0.00 0.00 3.18
2259 2295 3.584406 ACAGAAGAGATGACGGTCAAG 57.416 47.619 15.72 1.13 0.00 3.02
2260 2296 2.232452 ACAGAAGAGATGACGGTCAAGG 59.768 50.000 15.72 1.75 0.00 3.61
2261 2297 2.493675 CAGAAGAGATGACGGTCAAGGA 59.506 50.000 15.72 0.00 0.00 3.36
2262 2298 2.757868 AGAAGAGATGACGGTCAAGGAG 59.242 50.000 15.72 0.00 0.00 3.69
2263 2299 1.479709 AGAGATGACGGTCAAGGAGG 58.520 55.000 15.72 0.00 0.00 4.30
2264 2300 0.179097 GAGATGACGGTCAAGGAGGC 60.179 60.000 15.72 1.25 0.00 4.70
2265 2301 0.904865 AGATGACGGTCAAGGAGGCA 60.905 55.000 15.72 0.00 0.00 4.75
2266 2302 0.460987 GATGACGGTCAAGGAGGCAG 60.461 60.000 15.72 0.00 0.00 4.85
2267 2303 0.904865 ATGACGGTCAAGGAGGCAGA 60.905 55.000 15.72 0.00 0.00 4.26
2268 2304 1.216710 GACGGTCAAGGAGGCAGAG 59.783 63.158 2.62 0.00 0.00 3.35
2269 2305 2.232298 GACGGTCAAGGAGGCAGAGG 62.232 65.000 2.62 0.00 0.00 3.69
2270 2306 2.993853 GGTCAAGGAGGCAGAGGG 59.006 66.667 0.00 0.00 0.00 4.30
2271 2307 2.270527 GTCAAGGAGGCAGAGGGC 59.729 66.667 0.00 0.00 43.74 5.19
2272 2308 3.393970 TCAAGGAGGCAGAGGGCG 61.394 66.667 0.00 0.00 46.16 6.13
2273 2309 3.710722 CAAGGAGGCAGAGGGCGT 61.711 66.667 0.00 0.00 46.16 5.68
2274 2310 3.710722 AAGGAGGCAGAGGGCGTG 61.711 66.667 0.00 0.00 46.16 5.34
2275 2311 4.704103 AGGAGGCAGAGGGCGTGA 62.704 66.667 0.00 0.00 46.16 4.35
2276 2312 3.706373 GGAGGCAGAGGGCGTGAA 61.706 66.667 0.00 0.00 46.16 3.18
2277 2313 2.347490 GAGGCAGAGGGCGTGAAA 59.653 61.111 0.00 0.00 46.16 2.69
2278 2314 1.743252 GAGGCAGAGGGCGTGAAAG 60.743 63.158 0.00 0.00 46.16 2.62
2279 2315 2.172483 GAGGCAGAGGGCGTGAAAGA 62.172 60.000 0.00 0.00 46.16 2.52
2280 2316 1.078143 GGCAGAGGGCGTGAAAGAT 60.078 57.895 0.00 0.00 46.16 2.40
2281 2317 1.372087 GGCAGAGGGCGTGAAAGATG 61.372 60.000 0.00 0.00 46.16 2.90
2282 2318 1.986575 GCAGAGGGCGTGAAAGATGC 61.987 60.000 0.00 0.00 35.63 3.91
2283 2319 0.392193 CAGAGGGCGTGAAAGATGCT 60.392 55.000 0.00 0.00 36.73 3.79
2284 2320 1.134699 CAGAGGGCGTGAAAGATGCTA 60.135 52.381 0.00 0.00 36.73 3.49
2285 2321 1.137872 AGAGGGCGTGAAAGATGCTAG 59.862 52.381 0.00 0.00 36.73 3.42
2286 2322 0.905357 AGGGCGTGAAAGATGCTAGT 59.095 50.000 0.00 0.00 36.73 2.57
2287 2323 1.009829 GGGCGTGAAAGATGCTAGTG 58.990 55.000 0.00 0.00 36.73 2.74
2288 2324 1.405526 GGGCGTGAAAGATGCTAGTGA 60.406 52.381 0.00 0.00 36.73 3.41
2289 2325 2.555199 GGCGTGAAAGATGCTAGTGAT 58.445 47.619 0.00 0.00 36.73 3.06
2290 2326 2.286294 GGCGTGAAAGATGCTAGTGATG 59.714 50.000 0.00 0.00 36.73 3.07
2291 2327 3.190079 GCGTGAAAGATGCTAGTGATGA 58.810 45.455 0.00 0.00 33.31 2.92
2292 2328 3.618594 GCGTGAAAGATGCTAGTGATGAA 59.381 43.478 0.00 0.00 33.31 2.57
2293 2329 4.260132 GCGTGAAAGATGCTAGTGATGAAG 60.260 45.833 0.00 0.00 33.31 3.02
2294 2330 4.867047 CGTGAAAGATGCTAGTGATGAAGT 59.133 41.667 0.00 0.00 0.00 3.01
2295 2331 5.349817 CGTGAAAGATGCTAGTGATGAAGTT 59.650 40.000 0.00 0.00 0.00 2.66
2296 2332 6.541086 GTGAAAGATGCTAGTGATGAAGTTG 58.459 40.000 0.00 0.00 0.00 3.16
2297 2333 5.122869 TGAAAGATGCTAGTGATGAAGTTGC 59.877 40.000 0.00 0.00 0.00 4.17
2298 2334 4.212143 AGATGCTAGTGATGAAGTTGCA 57.788 40.909 0.00 0.00 42.83 4.08
2299 2335 4.190001 AGATGCTAGTGATGAAGTTGCAG 58.810 43.478 0.00 0.00 42.11 4.41
2300 2336 2.703416 TGCTAGTGATGAAGTTGCAGG 58.297 47.619 0.00 0.00 35.42 4.85
2301 2337 2.302733 TGCTAGTGATGAAGTTGCAGGA 59.697 45.455 0.00 0.00 35.42 3.86
2302 2338 3.054875 TGCTAGTGATGAAGTTGCAGGAT 60.055 43.478 0.00 0.00 35.42 3.24
2303 2339 3.559242 GCTAGTGATGAAGTTGCAGGATC 59.441 47.826 0.00 0.00 31.13 3.36
2304 2340 2.625737 AGTGATGAAGTTGCAGGATCG 58.374 47.619 0.00 0.00 0.00 3.69
2305 2341 1.667724 GTGATGAAGTTGCAGGATCGG 59.332 52.381 0.00 0.00 0.00 4.18
2306 2342 0.659957 GATGAAGTTGCAGGATCGGC 59.340 55.000 1.32 1.32 0.00 5.54
2307 2343 1.091771 ATGAAGTTGCAGGATCGGCG 61.092 55.000 0.00 0.00 0.00 6.46
2308 2344 2.436646 AAGTTGCAGGATCGGCGG 60.437 61.111 7.21 0.00 0.00 6.13
2309 2345 3.976701 AAGTTGCAGGATCGGCGGG 62.977 63.158 7.21 0.00 0.00 6.13
2316 2352 4.610714 GGATCGGCGGGCTCCTTC 62.611 72.222 7.21 0.00 0.00 3.46
2317 2353 4.951963 GATCGGCGGGCTCCTTCG 62.952 72.222 7.21 0.00 0.00 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.778741 CCACCATATTACACACATATTAAGAGT 57.221 33.333 0.00 0.00 0.00 3.24
13 14 4.159321 CCAAATGCCACCATATTACACACA 59.841 41.667 0.00 0.00 0.00 3.72
159 166 4.450976 ACAGCTAGTGTGATGTTTTGACA 58.549 39.130 0.00 0.00 38.28 3.58
253 261 4.750598 ACTCCTCAAGTAGAAAGCGAAAAC 59.249 41.667 0.00 0.00 36.07 2.43
258 266 2.161808 TCGACTCCTCAAGTAGAAAGCG 59.838 50.000 0.00 0.00 38.74 4.68
269 277 6.471233 AACAATAATCATCTCGACTCCTCA 57.529 37.500 0.00 0.00 0.00 3.86
427 435 7.826252 CCTCCAAATCTCAATCTCAACTAAAGA 59.174 37.037 0.00 0.00 0.00 2.52
428 436 7.609532 ACCTCCAAATCTCAATCTCAACTAAAG 59.390 37.037 0.00 0.00 0.00 1.85
503 511 1.271656 GGCTGCACTCTTCATTGCTTT 59.728 47.619 0.50 0.00 39.62 3.51
532 540 7.603404 CCACTTTTATTTTCTCAAATGGCATGA 59.397 33.333 0.00 0.00 34.29 3.07
533 541 7.624764 GCCACTTTTATTTTCTCAAATGGCATG 60.625 37.037 0.00 0.00 35.48 4.06
534 542 6.372381 GCCACTTTTATTTTCTCAAATGGCAT 59.628 34.615 0.00 0.00 35.48 4.40
535 543 5.700373 GCCACTTTTATTTTCTCAAATGGCA 59.300 36.000 0.00 0.00 35.48 4.92
536 544 5.163963 CGCCACTTTTATTTTCTCAAATGGC 60.164 40.000 0.00 0.00 34.29 4.40
538 546 5.634859 AGCGCCACTTTTATTTTCTCAAATG 59.365 36.000 2.29 0.00 34.29 2.32
539 547 5.783111 AGCGCCACTTTTATTTTCTCAAAT 58.217 33.333 2.29 0.00 36.52 2.32
559 583 8.784994 TCTTTATGACTAAGTCCTAATAGAGCG 58.215 37.037 0.00 0.00 0.00 5.03
589 613 4.401202 CCTCGTACTTTTATTTGCCCCATT 59.599 41.667 0.00 0.00 0.00 3.16
609 633 8.930760 GCACAGTTTTATGACATATAGATCCTC 58.069 37.037 0.00 0.00 0.00 3.71
622 646 6.491745 TGACCCTAAAATGCACAGTTTTATGA 59.508 34.615 1.07 0.00 32.42 2.15
640 665 1.827969 GCTCTTTCTGCTCTGACCCTA 59.172 52.381 0.00 0.00 0.00 3.53
647 672 2.158696 ACAACAAGGCTCTTTCTGCTCT 60.159 45.455 0.00 0.00 0.00 4.09
648 673 2.225467 ACAACAAGGCTCTTTCTGCTC 58.775 47.619 0.00 0.00 0.00 4.26
656 681 7.187824 TCATCTTCTATTACAACAAGGCTCT 57.812 36.000 0.00 0.00 0.00 4.09
658 683 6.352516 CCTCATCTTCTATTACAACAAGGCT 58.647 40.000 0.00 0.00 0.00 4.58
670 695 1.709578 TCGCTGGCCTCATCTTCTAT 58.290 50.000 3.32 0.00 0.00 1.98
671 696 1.485124 TTCGCTGGCCTCATCTTCTA 58.515 50.000 3.32 0.00 0.00 2.10
724 749 6.315891 CACAAATTGAGTGGTCCAATTGTTTT 59.684 34.615 4.43 0.00 41.71 2.43
725 750 5.816777 CACAAATTGAGTGGTCCAATTGTTT 59.183 36.000 4.43 0.00 41.71 2.83
726 751 5.358922 CACAAATTGAGTGGTCCAATTGTT 58.641 37.500 4.43 0.00 41.71 2.83
729 754 3.552684 CGCACAAATTGAGTGGTCCAATT 60.553 43.478 0.00 0.00 43.66 2.32
733 758 0.951558 ACGCACAAATTGAGTGGTCC 59.048 50.000 8.65 0.00 36.79 4.46
741 766 2.981805 CAAGGATGACACGCACAAATTG 59.018 45.455 0.00 0.00 0.00 2.32
764 789 2.158652 TCTACCTGCTACTATGACCGCT 60.159 50.000 0.00 0.00 0.00 5.52
765 790 2.228059 TCTACCTGCTACTATGACCGC 58.772 52.381 0.00 0.00 0.00 5.68
766 791 6.151312 ACATATTCTACCTGCTACTATGACCG 59.849 42.308 0.00 0.00 0.00 4.79
767 792 7.469537 ACATATTCTACCTGCTACTATGACC 57.530 40.000 0.00 0.00 0.00 4.02
773 798 9.233649 GTGTAGATACATATTCTACCTGCTACT 57.766 37.037 9.54 0.00 38.63 2.57
774 799 8.176365 CGTGTAGATACATATTCTACCTGCTAC 58.824 40.741 9.54 0.00 38.63 3.58
775 800 7.148289 GCGTGTAGATACATATTCTACCTGCTA 60.148 40.741 9.54 0.00 38.63 3.49
776 801 6.349445 GCGTGTAGATACATATTCTACCTGCT 60.349 42.308 9.54 0.00 38.63 4.24
777 802 5.800941 GCGTGTAGATACATATTCTACCTGC 59.199 44.000 9.54 9.36 38.63 4.85
778 803 6.022208 CGCGTGTAGATACATATTCTACCTG 58.978 44.000 0.00 4.77 38.63 4.00
779 804 5.704515 ACGCGTGTAGATACATATTCTACCT 59.295 40.000 12.93 0.00 38.63 3.08
780 805 5.793952 CACGCGTGTAGATACATATTCTACC 59.206 44.000 30.50 2.80 38.63 3.18
781 806 5.793952 CCACGCGTGTAGATACATATTCTAC 59.206 44.000 34.81 6.23 38.63 2.59
782 807 5.471116 ACCACGCGTGTAGATACATATTCTA 59.529 40.000 34.81 0.00 38.63 2.10
783 808 4.277672 ACCACGCGTGTAGATACATATTCT 59.722 41.667 34.81 0.70 38.63 2.40
784 809 4.381863 CACCACGCGTGTAGATACATATTC 59.618 45.833 34.81 0.00 38.63 1.75
785 810 4.295870 CACCACGCGTGTAGATACATATT 58.704 43.478 34.81 2.11 38.63 1.28
786 811 3.855895 GCACCACGCGTGTAGATACATAT 60.856 47.826 34.81 6.72 44.97 1.78
787 812 2.542205 GCACCACGCGTGTAGATACATA 60.542 50.000 34.81 0.00 44.97 2.29
788 813 1.801395 GCACCACGCGTGTAGATACAT 60.801 52.381 34.81 9.22 44.97 2.29
789 814 0.457166 GCACCACGCGTGTAGATACA 60.457 55.000 34.81 0.00 44.97 2.29
790 815 2.285154 GCACCACGCGTGTAGATAC 58.715 57.895 34.81 15.80 44.97 2.24
791 816 4.798288 GCACCACGCGTGTAGATA 57.202 55.556 34.81 0.00 44.97 1.98
807 832 0.462759 AACAGATGGGAAGCGCTAGC 60.463 55.000 12.05 4.06 45.58 3.42
808 833 1.936547 GAAACAGATGGGAAGCGCTAG 59.063 52.381 12.05 0.00 0.00 3.42
809 834 1.406887 GGAAACAGATGGGAAGCGCTA 60.407 52.381 12.05 0.00 0.00 4.26
810 835 0.678048 GGAAACAGATGGGAAGCGCT 60.678 55.000 2.64 2.64 0.00 5.92
811 836 1.803289 GGAAACAGATGGGAAGCGC 59.197 57.895 0.00 0.00 0.00 5.92
812 837 1.982073 GCGGAAACAGATGGGAAGCG 61.982 60.000 0.00 0.00 0.00 4.68
813 838 0.960364 TGCGGAAACAGATGGGAAGC 60.960 55.000 0.00 0.00 0.00 3.86
814 839 1.200020 GTTGCGGAAACAGATGGGAAG 59.800 52.381 0.00 0.00 38.75 3.46
815 840 1.202879 AGTTGCGGAAACAGATGGGAA 60.203 47.619 0.91 0.00 41.61 3.97
816 841 0.400213 AGTTGCGGAAACAGATGGGA 59.600 50.000 0.91 0.00 41.61 4.37
817 842 0.804989 GAGTTGCGGAAACAGATGGG 59.195 55.000 0.91 0.00 41.61 4.00
818 843 1.734465 GAGAGTTGCGGAAACAGATGG 59.266 52.381 0.91 0.00 41.61 3.51
819 844 2.670414 GAGAGAGTTGCGGAAACAGATG 59.330 50.000 0.91 0.00 41.61 2.90
820 845 2.354203 GGAGAGAGTTGCGGAAACAGAT 60.354 50.000 0.91 0.00 41.61 2.90
821 846 1.000955 GGAGAGAGTTGCGGAAACAGA 59.999 52.381 0.91 0.00 41.61 3.41
822 847 1.433534 GGAGAGAGTTGCGGAAACAG 58.566 55.000 0.91 0.00 41.61 3.16
823 848 0.034896 GGGAGAGAGTTGCGGAAACA 59.965 55.000 0.91 0.00 41.61 2.83
824 849 0.673956 GGGGAGAGAGTTGCGGAAAC 60.674 60.000 0.00 0.00 39.24 2.78
825 850 0.836400 AGGGGAGAGAGTTGCGGAAA 60.836 55.000 0.00 0.00 0.00 3.13
826 851 0.040646 TAGGGGAGAGAGTTGCGGAA 59.959 55.000 0.00 0.00 0.00 4.30
827 852 0.395862 CTAGGGGAGAGAGTTGCGGA 60.396 60.000 0.00 0.00 0.00 5.54
828 853 1.395826 CCTAGGGGAGAGAGTTGCGG 61.396 65.000 0.00 0.00 33.58 5.69
829 854 2.022240 GCCTAGGGGAGAGAGTTGCG 62.022 65.000 11.72 0.00 33.58 4.85
830 855 1.826709 GCCTAGGGGAGAGAGTTGC 59.173 63.158 11.72 0.00 33.58 4.17
831 856 0.395862 TCGCCTAGGGGAGAGAGTTG 60.396 60.000 23.87 0.00 36.52 3.16
832 857 0.558712 ATCGCCTAGGGGAGAGAGTT 59.441 55.000 29.85 12.46 44.23 3.01
833 858 1.447099 TATCGCCTAGGGGAGAGAGT 58.553 55.000 29.85 17.32 44.23 3.24
834 859 2.588464 TTATCGCCTAGGGGAGAGAG 57.412 55.000 29.85 0.00 44.23 3.20
835 860 2.963782 GTTTTATCGCCTAGGGGAGAGA 59.036 50.000 29.85 20.10 44.23 3.10
836 861 2.966516 AGTTTTATCGCCTAGGGGAGAG 59.033 50.000 29.85 0.00 44.23 3.20
837 862 3.042059 AGTTTTATCGCCTAGGGGAGA 57.958 47.619 29.85 24.54 45.04 3.71
838 863 3.258622 CCTAGTTTTATCGCCTAGGGGAG 59.741 52.174 29.85 15.53 42.69 4.30
902 930 2.356793 GGAGAGATGGCGCCGATG 60.357 66.667 23.90 0.00 0.00 3.84
912 940 1.053264 AATCAGCCTGGCGGAGAGAT 61.053 55.000 24.95 15.36 36.09 2.75
923 951 2.511452 CCCCGATCCGAATCAGCCT 61.511 63.158 0.00 0.00 31.76 4.58
928 956 3.612681 TCGCCCCCGATCCGAATC 61.613 66.667 0.00 0.00 38.82 2.52
997 1029 1.939255 GCTAGAACTTGCTGCCATCTC 59.061 52.381 0.00 0.00 0.00 2.75
1014 1046 1.080772 CTGTCGTCCTTGCGTGCTA 60.081 57.895 0.00 0.00 0.00 3.49
1029 1061 1.152030 TGCAGTCTCCTTCCCCTGT 60.152 57.895 0.00 0.00 0.00 4.00
1060 1092 0.324614 TCCTGCAAATTCAGCCGAGA 59.675 50.000 0.00 0.00 32.87 4.04
1086 1118 3.694043 TCCCAAACGAAGTCATCATCA 57.306 42.857 0.00 0.00 45.00 3.07
1167 1199 4.793028 GCATTAGGGCTAAAAGATTTCGGC 60.793 45.833 0.00 0.00 0.00 5.54
1290 1325 4.344679 TCCAACATTGCTTTGTTCCAATCT 59.655 37.500 2.40 0.00 37.73 2.40
1322 1357 2.499289 ACCGAATGATCTCTGAACAGCT 59.501 45.455 0.00 0.00 0.00 4.24
1339 1374 6.296202 CCATCATACCCCTTCATAATTACCGA 60.296 42.308 0.00 0.00 0.00 4.69
1355 1390 3.823304 GGGCTTCTTGAATCCATCATACC 59.177 47.826 5.73 0.00 38.03 2.73
1387 1422 0.034059 ACCGACAGCTTGTCCAAGAG 59.966 55.000 11.12 5.05 44.20 2.85
1390 1425 0.249868 CAGACCGACAGCTTGTCCAA 60.250 55.000 9.71 0.00 44.20 3.53
1410 1445 3.067883 CCGAGAGAAGATGAATCTGAGCA 59.932 47.826 0.00 0.00 37.19 4.26
1419 1454 5.185828 TCAGAAATTGTCCGAGAGAAGATGA 59.814 40.000 0.00 0.00 0.00 2.92
1429 1464 4.262036 CCGATCCTATCAGAAATTGTCCGA 60.262 45.833 0.00 0.00 0.00 4.55
1454 1490 2.043953 GATGCCAACCCCCTGACC 60.044 66.667 0.00 0.00 0.00 4.02
1475 1511 2.961536 TCTCCTCCACTTCCCCAATA 57.038 50.000 0.00 0.00 0.00 1.90
1494 1530 1.353022 TGCCGGGAGTTTTAACTGGAT 59.647 47.619 2.18 0.00 39.88 3.41
1502 1538 0.185175 AGAAACCTGCCGGGAGTTTT 59.815 50.000 18.27 18.27 38.76 2.43
1527 1563 2.160205 CACTCTGACCCTGACGAACTA 58.840 52.381 0.00 0.00 0.00 2.24
1582 1618 4.126823 TCTTCCCCTTTCTTCCCCATAAT 58.873 43.478 0.00 0.00 0.00 1.28
1586 1622 1.841334 TTCTTCCCCTTTCTTCCCCA 58.159 50.000 0.00 0.00 0.00 4.96
1592 1628 2.149521 TCCCCTTTCTTCCCCTTTCT 57.850 50.000 0.00 0.00 0.00 2.52
1593 1629 2.378886 TCTTCCCCTTTCTTCCCCTTTC 59.621 50.000 0.00 0.00 0.00 2.62
1594 1630 2.439265 TCTTCCCCTTTCTTCCCCTTT 58.561 47.619 0.00 0.00 0.00 3.11
1595 1631 2.149521 TCTTCCCCTTTCTTCCCCTT 57.850 50.000 0.00 0.00 0.00 3.95
1596 1632 2.149521 TTCTTCCCCTTTCTTCCCCT 57.850 50.000 0.00 0.00 0.00 4.79
1597 1633 2.378886 TCTTTCTTCCCCTTTCTTCCCC 59.621 50.000 0.00 0.00 0.00 4.81
1600 1636 4.974399 TCACTCTTTCTTCCCCTTTCTTC 58.026 43.478 0.00 0.00 0.00 2.87
1609 1645 4.040584 ACTTGGTACCTCACTCTTTCTTCC 59.959 45.833 14.36 0.00 0.00 3.46
1618 1654 5.084519 TCATACTTCACTTGGTACCTCACT 58.915 41.667 14.36 0.00 0.00 3.41
1662 1698 1.067915 GGCCAAATTCGCAGCAGTTAA 60.068 47.619 0.00 0.00 0.00 2.01
1670 1706 2.929903 GCCAGTGGCCAAATTCGCA 61.930 57.895 24.53 0.00 44.06 5.10
1739 1775 7.561021 TCACATTGTCAGCTAAAACAAACTA 57.439 32.000 11.21 0.00 38.74 2.24
1848 1884 4.706616 TGATTAGGATTATAGGGTCCCCC 58.293 47.826 3.51 0.00 45.90 5.40
1852 1888 6.127196 CCAGCTCTGATTAGGATTATAGGGTC 60.127 46.154 0.00 0.00 0.00 4.46
1880 1916 0.667453 TCTGTTGCTGCGCATTGAAA 59.333 45.000 12.24 0.00 38.76 2.69
1892 1928 3.363970 CGACATAGTGTTGGTTCTGTTGC 60.364 47.826 0.00 0.00 0.00 4.17
1914 1950 3.360956 CTTCATTTGCTGGCGCCCC 62.361 63.158 26.77 15.99 34.43 5.80
1919 1955 2.798976 TTGTCACTTCATTTGCTGGC 57.201 45.000 0.00 0.00 0.00 4.85
1923 1959 2.794350 CCGGTTTTGTCACTTCATTTGC 59.206 45.455 0.00 0.00 0.00 3.68
1948 1984 0.319900 CTCCACTGTCACAACCCGAG 60.320 60.000 0.00 0.00 0.00 4.63
1951 1987 1.884235 CTTCTCCACTGTCACAACCC 58.116 55.000 0.00 0.00 0.00 4.11
1973 2009 4.229812 TCTGTCCCTTCTAGATCACCACTA 59.770 45.833 0.00 0.00 0.00 2.74
1992 2028 2.555664 AGGTTCCCATCTGACATCTGT 58.444 47.619 0.00 0.00 0.00 3.41
1999 2035 3.181329 TCTTTGCTAGGTTCCCATCTGA 58.819 45.455 0.00 0.00 0.00 3.27
2000 2036 3.634397 TCTTTGCTAGGTTCCCATCTG 57.366 47.619 0.00 0.00 0.00 2.90
2001 2037 3.330701 TGTTCTTTGCTAGGTTCCCATCT 59.669 43.478 0.00 0.00 0.00 2.90
2002 2038 3.686016 TGTTCTTTGCTAGGTTCCCATC 58.314 45.455 0.00 0.00 0.00 3.51
2003 2039 3.806949 TGTTCTTTGCTAGGTTCCCAT 57.193 42.857 0.00 0.00 0.00 4.00
2004 2040 3.586470 TTGTTCTTTGCTAGGTTCCCA 57.414 42.857 0.00 0.00 0.00 4.37
2005 2041 3.304458 CGTTTGTTCTTTGCTAGGTTCCC 60.304 47.826 0.00 0.00 0.00 3.97
2006 2042 3.314357 ACGTTTGTTCTTTGCTAGGTTCC 59.686 43.478 0.00 0.00 0.00 3.62
2007 2043 4.547406 ACGTTTGTTCTTTGCTAGGTTC 57.453 40.909 0.00 0.00 0.00 3.62
2046 2082 2.362503 TCCCTCGACGTGCTGGAT 60.363 61.111 0.00 0.00 0.00 3.41
2058 2094 1.528129 CCACAAGCTGTTTCTCCCTC 58.472 55.000 0.00 0.00 0.00 4.30
2059 2095 0.111253 CCCACAAGCTGTTTCTCCCT 59.889 55.000 0.00 0.00 0.00 4.20
2060 2096 1.527433 GCCCACAAGCTGTTTCTCCC 61.527 60.000 0.00 0.00 0.00 4.30
2070 2106 3.426568 GTGCTCTCGCCCACAAGC 61.427 66.667 0.00 0.00 34.43 4.01
2071 2107 2.031012 TGTGCTCTCGCCCACAAG 59.969 61.111 0.00 0.00 38.87 3.16
2084 2120 4.635223 TGTGGAGCTATAATCATCTGTGC 58.365 43.478 0.00 0.00 0.00 4.57
2099 2135 1.595993 TACCGTCAGAGCTGTGGAGC 61.596 60.000 11.47 1.30 46.64 4.70
2100 2136 0.888619 TTACCGTCAGAGCTGTGGAG 59.111 55.000 11.47 5.33 33.57 3.86
2101 2137 1.204704 CATTACCGTCAGAGCTGTGGA 59.795 52.381 11.47 0.00 33.57 4.02
2102 2138 1.645034 CATTACCGTCAGAGCTGTGG 58.355 55.000 11.47 0.00 34.81 4.17
2103 2139 1.204704 TCCATTACCGTCAGAGCTGTG 59.795 52.381 4.05 4.05 0.00 3.66
2104 2140 1.478510 CTCCATTACCGTCAGAGCTGT 59.521 52.381 0.00 0.00 0.00 4.40
2105 2141 1.751351 TCTCCATTACCGTCAGAGCTG 59.249 52.381 0.00 0.00 0.00 4.24
2106 2142 2.145397 TCTCCATTACCGTCAGAGCT 57.855 50.000 0.00 0.00 0.00 4.09
2107 2143 2.815478 CTTCTCCATTACCGTCAGAGC 58.185 52.381 0.00 0.00 0.00 4.09
2108 2144 2.482142 GGCTTCTCCATTACCGTCAGAG 60.482 54.545 0.00 0.00 34.01 3.35
2109 2145 1.480954 GGCTTCTCCATTACCGTCAGA 59.519 52.381 0.00 0.00 34.01 3.27
2110 2146 1.473434 GGGCTTCTCCATTACCGTCAG 60.473 57.143 0.00 0.00 36.21 3.51
2111 2147 0.539986 GGGCTTCTCCATTACCGTCA 59.460 55.000 0.00 0.00 36.21 4.35
2112 2148 0.539986 TGGGCTTCTCCATTACCGTC 59.460 55.000 0.00 0.00 36.21 4.79
2113 2149 0.252197 GTGGGCTTCTCCATTACCGT 59.748 55.000 0.00 0.00 39.26 4.83
2114 2150 0.251916 TGTGGGCTTCTCCATTACCG 59.748 55.000 0.00 0.00 39.26 4.02
2115 2151 1.408822 CCTGTGGGCTTCTCCATTACC 60.409 57.143 0.00 0.00 39.26 2.85
2116 2152 1.408822 CCCTGTGGGCTTCTCCATTAC 60.409 57.143 0.00 0.00 39.26 1.89
2117 2153 0.918983 CCCTGTGGGCTTCTCCATTA 59.081 55.000 0.00 0.00 39.26 1.90
2118 2154 1.693640 CCCTGTGGGCTTCTCCATT 59.306 57.895 0.00 0.00 39.26 3.16
2119 2155 3.419858 CCCTGTGGGCTTCTCCAT 58.580 61.111 0.00 0.00 39.26 3.41
2150 2186 3.430929 CCTTGGAGAAACATAGACCGGAG 60.431 52.174 9.46 0.00 0.00 4.63
2151 2187 2.500098 CCTTGGAGAAACATAGACCGGA 59.500 50.000 9.46 0.00 0.00 5.14
2152 2188 2.500098 TCCTTGGAGAAACATAGACCGG 59.500 50.000 0.00 0.00 0.00 5.28
2153 2189 3.887621 TCCTTGGAGAAACATAGACCG 57.112 47.619 0.00 0.00 0.00 4.79
2154 2190 5.805728 TCTTTCCTTGGAGAAACATAGACC 58.194 41.667 0.00 0.00 32.45 3.85
2155 2191 5.877564 CCTCTTTCCTTGGAGAAACATAGAC 59.122 44.000 0.00 0.00 32.45 2.59
2156 2192 5.548056 ACCTCTTTCCTTGGAGAAACATAGA 59.452 40.000 0.00 0.00 32.45 1.98
2157 2193 5.645497 CACCTCTTTCCTTGGAGAAACATAG 59.355 44.000 0.00 0.00 32.45 2.23
2158 2194 5.309543 TCACCTCTTTCCTTGGAGAAACATA 59.690 40.000 0.00 0.00 32.45 2.29
2159 2195 4.104738 TCACCTCTTTCCTTGGAGAAACAT 59.895 41.667 0.00 0.00 32.45 2.71
2160 2196 3.458118 TCACCTCTTTCCTTGGAGAAACA 59.542 43.478 0.00 0.00 32.45 2.83
2161 2197 4.086706 TCACCTCTTTCCTTGGAGAAAC 57.913 45.455 0.00 0.00 32.45 2.78
2162 2198 4.412199 TCTTCACCTCTTTCCTTGGAGAAA 59.588 41.667 0.00 0.00 31.98 2.52
2163 2199 3.973973 TCTTCACCTCTTTCCTTGGAGAA 59.026 43.478 0.00 0.00 0.00 2.87
2164 2200 3.580458 CTCTTCACCTCTTTCCTTGGAGA 59.420 47.826 0.00 0.00 0.00 3.71
2165 2201 3.326297 ACTCTTCACCTCTTTCCTTGGAG 59.674 47.826 0.00 0.00 0.00 3.86
2166 2202 3.318313 ACTCTTCACCTCTTTCCTTGGA 58.682 45.455 0.00 0.00 0.00 3.53
2167 2203 3.558109 GGACTCTTCACCTCTTTCCTTGG 60.558 52.174 0.00 0.00 0.00 3.61
2168 2204 3.326297 AGGACTCTTCACCTCTTTCCTTG 59.674 47.826 0.00 0.00 0.00 3.61
2169 2205 3.592865 AGGACTCTTCACCTCTTTCCTT 58.407 45.455 0.00 0.00 0.00 3.36
2170 2206 3.268034 AGGACTCTTCACCTCTTTCCT 57.732 47.619 0.00 0.00 0.00 3.36
2171 2207 4.773149 TCTTAGGACTCTTCACCTCTTTCC 59.227 45.833 0.00 0.00 37.68 3.13
2172 2208 5.986501 TCTTAGGACTCTTCACCTCTTTC 57.013 43.478 0.00 0.00 37.68 2.62
2173 2209 5.247337 CCTTCTTAGGACTCTTCACCTCTTT 59.753 44.000 0.00 0.00 45.05 2.52
2174 2210 4.775253 CCTTCTTAGGACTCTTCACCTCTT 59.225 45.833 0.00 0.00 45.05 2.85
2175 2211 4.349365 CCTTCTTAGGACTCTTCACCTCT 58.651 47.826 0.00 0.00 45.05 3.69
2176 2212 3.449377 CCCTTCTTAGGACTCTTCACCTC 59.551 52.174 0.00 0.00 45.05 3.85
2177 2213 3.445987 CCCTTCTTAGGACTCTTCACCT 58.554 50.000 0.00 0.00 45.05 4.00
2178 2214 2.502130 CCCCTTCTTAGGACTCTTCACC 59.498 54.545 0.00 0.00 45.05 4.02
2179 2215 2.502130 CCCCCTTCTTAGGACTCTTCAC 59.498 54.545 0.00 0.00 45.05 3.18
2180 2216 2.385765 TCCCCCTTCTTAGGACTCTTCA 59.614 50.000 0.00 0.00 45.05 3.02
2181 2217 3.117552 TCCCCCTTCTTAGGACTCTTC 57.882 52.381 0.00 0.00 45.05 2.87
2182 2218 3.388913 CATCCCCCTTCTTAGGACTCTT 58.611 50.000 0.00 0.00 45.05 2.85
2183 2219 2.360854 CCATCCCCCTTCTTAGGACTCT 60.361 54.545 0.00 0.00 45.05 3.24
2184 2220 2.050918 CCATCCCCCTTCTTAGGACTC 58.949 57.143 0.00 0.00 45.05 3.36
2185 2221 1.369983 ACCATCCCCCTTCTTAGGACT 59.630 52.381 0.00 0.00 45.05 3.85
2186 2222 1.894699 ACCATCCCCCTTCTTAGGAC 58.105 55.000 0.00 0.00 45.05 3.85
2187 2223 3.807288 TTACCATCCCCCTTCTTAGGA 57.193 47.619 0.00 0.00 45.05 2.94
2188 2224 5.412384 TCTATTACCATCCCCCTTCTTAGG 58.588 45.833 0.00 0.00 41.60 2.69
2189 2225 6.323737 TCTCTATTACCATCCCCCTTCTTAG 58.676 44.000 0.00 0.00 0.00 2.18
2190 2226 6.303427 TCTCTATTACCATCCCCCTTCTTA 57.697 41.667 0.00 0.00 0.00 2.10
2191 2227 5.171541 TCTCTATTACCATCCCCCTTCTT 57.828 43.478 0.00 0.00 0.00 2.52
2192 2228 4.852991 TCTCTATTACCATCCCCCTTCT 57.147 45.455 0.00 0.00 0.00 2.85
2193 2229 4.263112 GCTTCTCTATTACCATCCCCCTTC 60.263 50.000 0.00 0.00 0.00 3.46
2194 2230 3.653352 GCTTCTCTATTACCATCCCCCTT 59.347 47.826 0.00 0.00 0.00 3.95
2195 2231 3.116159 AGCTTCTCTATTACCATCCCCCT 60.116 47.826 0.00 0.00 0.00 4.79
2196 2232 3.252351 AGCTTCTCTATTACCATCCCCC 58.748 50.000 0.00 0.00 0.00 5.40
2197 2233 4.984146 AAGCTTCTCTATTACCATCCCC 57.016 45.455 0.00 0.00 0.00 4.81
2198 2234 5.685728 ACAAAGCTTCTCTATTACCATCCC 58.314 41.667 0.00 0.00 0.00 3.85
2199 2235 6.261158 GGAACAAAGCTTCTCTATTACCATCC 59.739 42.308 0.00 0.00 0.00 3.51
2200 2236 6.823689 TGGAACAAAGCTTCTCTATTACCATC 59.176 38.462 0.00 0.00 31.92 3.51
2201 2237 6.721318 TGGAACAAAGCTTCTCTATTACCAT 58.279 36.000 0.00 0.00 31.92 3.55
2202 2238 6.121776 TGGAACAAAGCTTCTCTATTACCA 57.878 37.500 0.00 0.00 31.92 3.25
2203 2239 5.586643 CCTGGAACAAAGCTTCTCTATTACC 59.413 44.000 0.00 0.00 38.70 2.85
2204 2240 6.407202 TCCTGGAACAAAGCTTCTCTATTAC 58.593 40.000 0.00 0.00 38.70 1.89
2205 2241 6.620877 TCCTGGAACAAAGCTTCTCTATTA 57.379 37.500 0.00 0.00 38.70 0.98
2206 2242 5.495640 CTCCTGGAACAAAGCTTCTCTATT 58.504 41.667 0.00 0.00 38.70 1.73
2207 2243 4.625083 GCTCCTGGAACAAAGCTTCTCTAT 60.625 45.833 0.00 0.00 41.97 1.98
2208 2244 3.307059 GCTCCTGGAACAAAGCTTCTCTA 60.307 47.826 0.00 0.00 41.97 2.43
2209 2245 2.551938 GCTCCTGGAACAAAGCTTCTCT 60.552 50.000 0.00 0.00 41.97 3.10
2210 2246 1.809547 GCTCCTGGAACAAAGCTTCTC 59.190 52.381 0.00 0.00 41.97 2.87
2211 2247 1.546548 GGCTCCTGGAACAAAGCTTCT 60.547 52.381 0.00 0.00 43.87 2.85
2212 2248 0.884514 GGCTCCTGGAACAAAGCTTC 59.115 55.000 0.00 0.00 43.87 3.86
2213 2249 0.185901 TGGCTCCTGGAACAAAGCTT 59.814 50.000 0.00 0.00 43.87 3.74
2214 2250 0.185901 TTGGCTCCTGGAACAAAGCT 59.814 50.000 10.12 0.00 43.87 3.74
2215 2251 0.315251 GTTGGCTCCTGGAACAAAGC 59.685 55.000 13.19 5.81 43.73 3.51
2216 2252 0.593128 CGTTGGCTCCTGGAACAAAG 59.407 55.000 13.19 11.81 38.70 2.77
2217 2253 0.821711 CCGTTGGCTCCTGGAACAAA 60.822 55.000 13.19 0.00 38.70 2.83
2218 2254 1.228124 CCGTTGGCTCCTGGAACAA 60.228 57.895 8.84 8.84 38.70 2.83
2219 2255 2.429930 CCGTTGGCTCCTGGAACA 59.570 61.111 0.00 0.00 0.00 3.18
2220 2256 3.056328 GCCGTTGGCTCCTGGAAC 61.056 66.667 0.00 0.00 46.69 3.62
2230 2266 2.166459 TCATCTCTTCTGTAGCCGTTGG 59.834 50.000 0.00 0.00 0.00 3.77
2231 2267 3.182967 GTCATCTCTTCTGTAGCCGTTG 58.817 50.000 0.00 0.00 0.00 4.10
2232 2268 2.159366 CGTCATCTCTTCTGTAGCCGTT 60.159 50.000 0.00 0.00 0.00 4.44
2233 2269 1.402259 CGTCATCTCTTCTGTAGCCGT 59.598 52.381 0.00 0.00 0.00 5.68
2234 2270 1.268794 CCGTCATCTCTTCTGTAGCCG 60.269 57.143 0.00 0.00 0.00 5.52
2235 2271 1.751924 ACCGTCATCTCTTCTGTAGCC 59.248 52.381 0.00 0.00 0.00 3.93
2236 2272 2.423892 TGACCGTCATCTCTTCTGTAGC 59.576 50.000 0.00 0.00 0.00 3.58
2237 2273 4.439426 CCTTGACCGTCATCTCTTCTGTAG 60.439 50.000 1.09 0.00 0.00 2.74
2238 2274 3.444034 CCTTGACCGTCATCTCTTCTGTA 59.556 47.826 1.09 0.00 0.00 2.74
2239 2275 2.232452 CCTTGACCGTCATCTCTTCTGT 59.768 50.000 1.09 0.00 0.00 3.41
2240 2276 2.493675 TCCTTGACCGTCATCTCTTCTG 59.506 50.000 1.09 0.00 0.00 3.02
2241 2277 2.757868 CTCCTTGACCGTCATCTCTTCT 59.242 50.000 1.09 0.00 0.00 2.85
2242 2278 2.159170 CCTCCTTGACCGTCATCTCTTC 60.159 54.545 1.09 0.00 0.00 2.87
2243 2279 1.827969 CCTCCTTGACCGTCATCTCTT 59.172 52.381 1.09 0.00 0.00 2.85
2244 2280 1.479709 CCTCCTTGACCGTCATCTCT 58.520 55.000 1.09 0.00 0.00 3.10
2245 2281 0.179097 GCCTCCTTGACCGTCATCTC 60.179 60.000 1.09 0.00 0.00 2.75
2246 2282 0.904865 TGCCTCCTTGACCGTCATCT 60.905 55.000 1.09 0.00 0.00 2.90
2247 2283 0.460987 CTGCCTCCTTGACCGTCATC 60.461 60.000 1.09 0.00 0.00 2.92
2248 2284 0.904865 TCTGCCTCCTTGACCGTCAT 60.905 55.000 1.09 0.00 0.00 3.06
2249 2285 1.533033 TCTGCCTCCTTGACCGTCA 60.533 57.895 0.00 0.00 0.00 4.35
2250 2286 1.216710 CTCTGCCTCCTTGACCGTC 59.783 63.158 0.00 0.00 0.00 4.79
2251 2287 2.286523 CCTCTGCCTCCTTGACCGT 61.287 63.158 0.00 0.00 0.00 4.83
2252 2288 2.581354 CCTCTGCCTCCTTGACCG 59.419 66.667 0.00 0.00 0.00 4.79
2253 2289 2.993853 CCCTCTGCCTCCTTGACC 59.006 66.667 0.00 0.00 0.00 4.02
2254 2290 2.270527 GCCCTCTGCCTCCTTGAC 59.729 66.667 0.00 0.00 0.00 3.18
2255 2291 3.393970 CGCCCTCTGCCTCCTTGA 61.394 66.667 0.00 0.00 36.24 3.02
2256 2292 3.710722 ACGCCCTCTGCCTCCTTG 61.711 66.667 0.00 0.00 36.24 3.61
2257 2293 3.710722 CACGCCCTCTGCCTCCTT 61.711 66.667 0.00 0.00 36.24 3.36
2258 2294 4.704103 TCACGCCCTCTGCCTCCT 62.704 66.667 0.00 0.00 36.24 3.69
2259 2295 3.254024 TTTCACGCCCTCTGCCTCC 62.254 63.158 0.00 0.00 36.24 4.30
2260 2296 1.743252 CTTTCACGCCCTCTGCCTC 60.743 63.158 0.00 0.00 36.24 4.70
2261 2297 1.557269 ATCTTTCACGCCCTCTGCCT 61.557 55.000 0.00 0.00 36.24 4.75
2262 2298 1.078143 ATCTTTCACGCCCTCTGCC 60.078 57.895 0.00 0.00 36.24 4.85
2263 2299 1.986575 GCATCTTTCACGCCCTCTGC 61.987 60.000 0.00 0.00 0.00 4.26
2264 2300 0.392193 AGCATCTTTCACGCCCTCTG 60.392 55.000 0.00 0.00 0.00 3.35
2265 2301 1.137872 CTAGCATCTTTCACGCCCTCT 59.862 52.381 0.00 0.00 0.00 3.69
2266 2302 1.134670 ACTAGCATCTTTCACGCCCTC 60.135 52.381 0.00 0.00 0.00 4.30
2267 2303 0.905357 ACTAGCATCTTTCACGCCCT 59.095 50.000 0.00 0.00 0.00 5.19
2268 2304 1.009829 CACTAGCATCTTTCACGCCC 58.990 55.000 0.00 0.00 0.00 6.13
2269 2305 2.010145 TCACTAGCATCTTTCACGCC 57.990 50.000 0.00 0.00 0.00 5.68
2270 2306 3.190079 TCATCACTAGCATCTTTCACGC 58.810 45.455 0.00 0.00 0.00 5.34
2271 2307 4.867047 ACTTCATCACTAGCATCTTTCACG 59.133 41.667 0.00 0.00 0.00 4.35
2272 2308 6.541086 CAACTTCATCACTAGCATCTTTCAC 58.459 40.000 0.00 0.00 0.00 3.18
2273 2309 5.122869 GCAACTTCATCACTAGCATCTTTCA 59.877 40.000 0.00 0.00 0.00 2.69
2274 2310 5.122869 TGCAACTTCATCACTAGCATCTTTC 59.877 40.000 0.00 0.00 0.00 2.62
2275 2311 5.005740 TGCAACTTCATCACTAGCATCTTT 58.994 37.500 0.00 0.00 0.00 2.52
2276 2312 4.582869 TGCAACTTCATCACTAGCATCTT 58.417 39.130 0.00 0.00 0.00 2.40
2277 2313 4.190001 CTGCAACTTCATCACTAGCATCT 58.810 43.478 0.00 0.00 0.00 2.90
2278 2314 3.311871 CCTGCAACTTCATCACTAGCATC 59.688 47.826 0.00 0.00 0.00 3.91
2279 2315 3.054875 TCCTGCAACTTCATCACTAGCAT 60.055 43.478 0.00 0.00 0.00 3.79
2280 2316 2.302733 TCCTGCAACTTCATCACTAGCA 59.697 45.455 0.00 0.00 0.00 3.49
2281 2317 2.977914 TCCTGCAACTTCATCACTAGC 58.022 47.619 0.00 0.00 0.00 3.42
2282 2318 3.801050 CGATCCTGCAACTTCATCACTAG 59.199 47.826 0.00 0.00 0.00 2.57
2283 2319 3.430790 CCGATCCTGCAACTTCATCACTA 60.431 47.826 0.00 0.00 0.00 2.74
2284 2320 2.625737 CGATCCTGCAACTTCATCACT 58.374 47.619 0.00 0.00 0.00 3.41
2285 2321 1.667724 CCGATCCTGCAACTTCATCAC 59.332 52.381 0.00 0.00 0.00 3.06
2286 2322 2.013563 GCCGATCCTGCAACTTCATCA 61.014 52.381 0.00 0.00 0.00 3.07
2287 2323 0.659957 GCCGATCCTGCAACTTCATC 59.340 55.000 0.00 0.00 0.00 2.92
2288 2324 1.091771 CGCCGATCCTGCAACTTCAT 61.092 55.000 3.13 0.00 0.00 2.57
2289 2325 1.741401 CGCCGATCCTGCAACTTCA 60.741 57.895 3.13 0.00 0.00 3.02
2290 2326 2.464459 CCGCCGATCCTGCAACTTC 61.464 63.158 3.13 0.00 0.00 3.01
2291 2327 2.436646 CCGCCGATCCTGCAACTT 60.437 61.111 3.13 0.00 0.00 2.66
2292 2328 4.473520 CCCGCCGATCCTGCAACT 62.474 66.667 3.13 0.00 0.00 3.16
2299 2335 4.610714 GAAGGAGCCCGCCGATCC 62.611 72.222 0.00 0.00 0.00 3.36
2300 2336 4.951963 CGAAGGAGCCCGCCGATC 62.952 72.222 0.00 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.