Multiple sequence alignment - TraesCS2B01G452900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G452900 chr2B 100.000 4829 0 0 1 4829 646686622 646691450 0.000000e+00 8918.0
1 TraesCS2B01G452900 chr2A 90.000 2750 190 41 821 3523 684474926 684477637 0.000000e+00 3476.0
2 TraesCS2B01G452900 chr2A 90.827 1330 84 20 3520 4827 684477739 684479052 0.000000e+00 1746.0
3 TraesCS2B01G452900 chr2A 75.195 641 87 40 42 615 684462434 684463069 2.250000e-58 237.0
4 TraesCS2B01G452900 chr2A 79.868 303 33 13 864 1139 684462001 684462302 3.810000e-46 196.0
5 TraesCS2B01G452900 chr2A 93.878 49 2 1 1 48 209808168 209808120 6.700000e-09 73.1
6 TraesCS2B01G452900 chr2D 90.035 2258 138 34 2620 4827 541070651 541072871 0.000000e+00 2843.0
7 TraesCS2B01G452900 chr2D 88.239 1607 116 38 409 1979 541068022 541069591 0.000000e+00 1853.0
8 TraesCS2B01G452900 chr2D 90.287 628 53 7 1997 2620 541069770 541070393 0.000000e+00 815.0
9 TraesCS2B01G452900 chr2D 78.125 416 42 24 45 414 541066088 541066500 8.140000e-53 219.0
10 TraesCS2B01G452900 chr2D 76.393 305 47 18 845 1138 541065663 541065953 1.810000e-29 141.0
11 TraesCS2B01G452900 chr5B 97.959 49 0 1 1 48 234926734 234926782 3.100000e-12 84.2
12 TraesCS2B01G452900 chr5B 93.878 49 2 1 1 48 79515126 79515078 6.700000e-09 73.1
13 TraesCS2B01G452900 chr5B 93.878 49 2 1 1 48 265982888 265982840 6.700000e-09 73.1
14 TraesCS2B01G452900 chr5B 93.878 49 2 1 1 48 498776315 498776363 6.700000e-09 73.1
15 TraesCS2B01G452900 chr5B 93.878 49 2 1 1 48 621633371 621633419 6.700000e-09 73.1
16 TraesCS2B01G452900 chr6B 93.878 49 2 1 1 48 709598391 709598439 6.700000e-09 73.1
17 TraesCS2B01G452900 chr4A 93.878 49 2 1 1 48 711994030 711993982 6.700000e-09 73.1
18 TraesCS2B01G452900 chr1A 93.878 49 2 1 1 48 248091414 248091462 6.700000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G452900 chr2B 646686622 646691450 4828 False 8918.0 8918 100.0000 1 4829 1 chr2B.!!$F1 4828
1 TraesCS2B01G452900 chr2A 684474926 684479052 4126 False 2611.0 3476 90.4135 821 4827 2 chr2A.!!$F2 4006
2 TraesCS2B01G452900 chr2A 684462001 684463069 1068 False 216.5 237 77.5315 42 1139 2 chr2A.!!$F1 1097
3 TraesCS2B01G452900 chr2D 541065663 541072871 7208 False 1174.2 2843 84.6158 45 4827 5 chr2D.!!$F1 4782

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
732 2690 0.034337 GGGGTAGAGTGTGCGTGAAA 59.966 55.000 0.00 0.00 0.00 2.69 F
746 2704 0.240945 GTGAAAGCGTTCATGGGGTG 59.759 55.000 18.04 0.00 45.38 4.61 F
762 2720 0.394216 GGTGGGTGCATGCTCATGTA 60.394 55.000 20.33 4.29 40.80 2.29 F
2216 4444 0.597637 ACGTGTCACTGTGCTGTAGC 60.598 55.000 2.12 0.00 42.50 3.58 F
2940 5442 1.206132 ACGTTGTTGGTCTGACAGACA 59.794 47.619 31.35 17.73 46.79 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2268 4496 0.256752 ATGGCCTGCATGAGCTAACA 59.743 50.0 3.32 0.00 42.74 2.41 R
2474 4702 1.842052 TCCGACCTATGTACACTGCA 58.158 50.0 0.00 0.00 0.00 4.41 R
2478 4706 2.691526 TGGTGATCCGACCTATGTACAC 59.308 50.0 0.00 0.00 36.88 2.90 R
3487 6022 0.190815 ACCATTTTGGGCCTCAAGGT 59.809 50.0 4.53 6.62 43.37 3.50 R
4733 7412 0.104487 TTACCAACTGACGCCGACAA 59.896 50.0 0.00 0.00 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.524101 GCCCATTAAGTCCAAAACAATAGA 57.476 37.500 0.00 0.00 0.00 1.98
25 26 6.071616 GCCCATTAAGTCCAAAACAATAGACA 60.072 38.462 0.00 0.00 0.00 3.41
26 27 7.524698 GCCCATTAAGTCCAAAACAATAGACAA 60.525 37.037 0.00 0.00 0.00 3.18
28 29 9.410556 CCATTAAGTCCAAAACAATAGACAAAG 57.589 33.333 0.00 0.00 0.00 2.77
29 30 9.965824 CATTAAGTCCAAAACAATAGACAAAGT 57.034 29.630 0.00 0.00 0.00 2.66
32 33 7.203255 AGTCCAAAACAATAGACAAAGTAGC 57.797 36.000 0.00 0.00 0.00 3.58
33 34 6.770785 AGTCCAAAACAATAGACAAAGTAGCA 59.229 34.615 0.00 0.00 0.00 3.49
34 35 7.448469 AGTCCAAAACAATAGACAAAGTAGCAT 59.552 33.333 0.00 0.00 0.00 3.79
35 36 7.538678 GTCCAAAACAATAGACAAAGTAGCATG 59.461 37.037 0.00 0.00 0.00 4.06
36 37 6.808212 CCAAAACAATAGACAAAGTAGCATGG 59.192 38.462 0.00 0.00 0.00 3.66
37 38 7.309133 CCAAAACAATAGACAAAGTAGCATGGA 60.309 37.037 0.00 0.00 0.00 3.41
38 39 6.992063 AACAATAGACAAAGTAGCATGGAG 57.008 37.500 0.00 0.00 0.00 3.86
39 40 4.878397 ACAATAGACAAAGTAGCATGGAGC 59.122 41.667 0.00 0.00 46.19 4.70
64 446 6.705863 ATCAAAACTCCTCCAATAGCATTC 57.294 37.500 0.00 0.00 0.00 2.67
69 451 4.384056 ACTCCTCCAATAGCATTCGATTG 58.616 43.478 2.92 2.92 35.78 2.67
85 467 6.621737 TTCGATTGTTGTACGATTAGTGTC 57.378 37.500 0.00 0.00 36.02 3.67
118 512 1.668826 AAACTAGAGGGGTGCCATGA 58.331 50.000 0.00 0.00 0.00 3.07
153 547 2.174210 AGATCTGCCACTGCCACAATAT 59.826 45.455 0.00 0.00 36.33 1.28
158 552 1.402968 GCCACTGCCACAATATCACTG 59.597 52.381 0.00 0.00 0.00 3.66
181 575 0.973632 TGCTACCACTTGTCGTCCAT 59.026 50.000 0.00 0.00 0.00 3.41
185 579 2.859165 ACCACTTGTCGTCCATCATT 57.141 45.000 0.00 0.00 0.00 2.57
186 580 3.973206 ACCACTTGTCGTCCATCATTA 57.027 42.857 0.00 0.00 0.00 1.90
192 601 4.202264 ACTTGTCGTCCATCATTATCTCCC 60.202 45.833 0.00 0.00 0.00 4.30
199 608 4.047166 TCCATCATTATCTCCCACCAGTT 58.953 43.478 0.00 0.00 0.00 3.16
206 615 4.284550 TCCCACCAGTTGCAGCCC 62.285 66.667 0.00 0.00 0.00 5.19
208 617 4.954970 CCACCAGTTGCAGCCCGT 62.955 66.667 0.00 0.00 0.00 5.28
221 630 4.622456 CCCGTGTGTTGCCGCAAC 62.622 66.667 26.21 26.21 43.78 4.17
226 635 4.980903 GTGTTGCCGCAACGCCTG 62.981 66.667 30.93 0.00 46.13 4.85
236 645 4.021925 AACGCCTGAGCCACCTCC 62.022 66.667 0.00 0.00 37.29 4.30
240 649 2.581354 CCTGAGCCACCTCCTTCG 59.419 66.667 0.00 0.00 37.29 3.79
241 650 2.286523 CCTGAGCCACCTCCTTCGT 61.287 63.158 0.00 0.00 37.29 3.85
279 688 2.252072 CTCCGCCCATCCCTCGAAAA 62.252 60.000 0.00 0.00 0.00 2.29
292 701 2.271800 CTCGAAAACCCTCATTCTCCG 58.728 52.381 0.00 0.00 0.00 4.63
298 707 2.190578 CCTCATTCTCCGGTGCCC 59.809 66.667 0.00 0.00 0.00 5.36
299 708 2.669133 CCTCATTCTCCGGTGCCCA 61.669 63.158 0.00 0.00 0.00 5.36
300 709 1.528824 CTCATTCTCCGGTGCCCAT 59.471 57.895 0.00 0.00 0.00 4.00
301 710 0.107017 CTCATTCTCCGGTGCCCATT 60.107 55.000 0.00 0.00 0.00 3.16
302 711 0.331278 TCATTCTCCGGTGCCCATTT 59.669 50.000 0.00 0.00 0.00 2.32
303 712 1.562008 TCATTCTCCGGTGCCCATTTA 59.438 47.619 0.00 0.00 0.00 1.40
305 714 0.034863 TTCTCCGGTGCCCATTTACC 60.035 55.000 0.00 0.00 0.00 2.85
306 715 1.202099 TCTCCGGTGCCCATTTACCA 61.202 55.000 0.00 0.00 36.76 3.25
307 716 1.001887 TCCGGTGCCCATTTACCAC 60.002 57.895 0.00 0.00 36.76 4.16
308 717 2.049767 CCGGTGCCCATTTACCACC 61.050 63.158 0.00 0.00 44.28 4.61
309 718 1.001393 CGGTGCCCATTTACCACCT 60.001 57.895 7.36 0.00 45.26 4.00
310 719 1.029947 CGGTGCCCATTTACCACCTC 61.030 60.000 7.36 0.00 45.26 3.85
312 721 0.683179 GTGCCCATTTACCACCTCCC 60.683 60.000 0.00 0.00 0.00 4.30
315 724 1.007607 CCCATTTACCACCTCCCCTT 58.992 55.000 0.00 0.00 0.00 3.95
316 725 1.341976 CCCATTTACCACCTCCCCTTG 60.342 57.143 0.00 0.00 0.00 3.61
317 726 1.341976 CCATTTACCACCTCCCCTTGG 60.342 57.143 0.00 0.00 39.00 3.61
319 728 2.132089 TTTACCACCTCCCCTTGGCG 62.132 60.000 0.00 0.00 36.20 5.69
320 729 3.549433 TACCACCTCCCCTTGGCGA 62.549 63.158 0.00 0.00 36.20 5.54
321 730 4.101448 CCACCTCCCCTTGGCGAG 62.101 72.222 0.00 0.00 0.00 5.03
324 733 3.330720 CCTCCCCTTGGCGAGGTT 61.331 66.667 19.53 0.00 44.71 3.50
325 734 2.045926 CTCCCCTTGGCGAGGTTG 60.046 66.667 19.53 10.28 44.71 3.77
326 735 3.628646 CTCCCCTTGGCGAGGTTGG 62.629 68.421 19.53 14.09 44.71 3.77
330 739 2.672996 CTTGGCGAGGTTGGTGGG 60.673 66.667 0.00 0.00 0.00 4.61
331 740 3.491598 CTTGGCGAGGTTGGTGGGT 62.492 63.158 0.00 0.00 0.00 4.51
332 741 3.783362 TTGGCGAGGTTGGTGGGTG 62.783 63.158 0.00 0.00 0.00 4.61
348 767 1.939785 GTGCGGCGTCTCGTCTATG 60.940 63.158 9.37 0.00 0.00 2.23
360 779 2.290916 CTCGTCTATGGCTCGAGCTTTA 59.709 50.000 34.46 23.83 42.94 1.85
363 782 3.551046 CGTCTATGGCTCGAGCTTTATGT 60.551 47.826 34.46 17.03 41.70 2.29
367 786 1.555075 TGGCTCGAGCTTTATGTCCTT 59.445 47.619 34.46 0.00 41.70 3.36
388 810 6.098266 TCCTTGTTCTCCATAAATCATCTCGA 59.902 38.462 0.00 0.00 0.00 4.04
389 811 6.763135 CCTTGTTCTCCATAAATCATCTCGAA 59.237 38.462 0.00 0.00 0.00 3.71
414 839 8.650143 AAAAAGGATAATTGCCTCAAGACTAA 57.350 30.769 2.57 0.00 33.76 2.24
415 840 8.650143 AAAAGGATAATTGCCTCAAGACTAAA 57.350 30.769 2.57 0.00 33.76 1.85
417 842 8.650143 AAGGATAATTGCCTCAAGACTAAAAA 57.350 30.769 2.57 0.00 33.76 1.94
418 843 8.829373 AGGATAATTGCCTCAAGACTAAAAAT 57.171 30.769 0.00 0.00 0.00 1.82
419 844 8.689972 AGGATAATTGCCTCAAGACTAAAAATG 58.310 33.333 0.00 0.00 0.00 2.32
420 845 7.436376 GGATAATTGCCTCAAGACTAAAAATGC 59.564 37.037 0.00 0.00 0.00 3.56
425 2377 6.344500 TGCCTCAAGACTAAAAATGCAAAAA 58.656 32.000 0.00 0.00 0.00 1.94
454 2406 8.593945 ATCACAAGGGAAAATATATGTTGTGT 57.406 30.769 10.99 4.42 42.41 3.72
514 2466 9.892130 AATAAGAGAAATAAAACGGTGAGATCT 57.108 29.630 0.00 0.00 0.00 2.75
515 2467 7.835634 AAGAGAAATAAAACGGTGAGATCTC 57.164 36.000 16.21 16.21 0.00 2.75
516 2468 6.936279 AGAGAAATAAAACGGTGAGATCTCA 58.064 36.000 21.67 21.67 34.64 3.27
519 2471 7.560368 AGAAATAAAACGGTGAGATCTCATCT 58.440 34.615 28.83 19.45 42.18 2.90
521 2473 8.567285 AAATAAAACGGTGAGATCTCATCTTT 57.433 30.769 28.83 24.08 42.18 2.52
524 2476 2.432510 ACGGTGAGATCTCATCTTTCCC 59.567 50.000 28.83 21.55 42.18 3.97
525 2477 2.432146 CGGTGAGATCTCATCTTTCCCA 59.568 50.000 28.83 2.82 42.18 4.37
531 2483 7.398618 GGTGAGATCTCATCTTTCCCATCTATA 59.601 40.741 27.51 0.00 42.18 1.31
550 2502 1.443363 GCTTGAGCTTTGCGCCTTC 60.443 57.895 4.18 0.00 40.39 3.46
554 2506 1.282875 GAGCTTTGCGCCTTCGTTT 59.717 52.632 4.18 0.00 40.39 3.60
560 2512 1.837538 TTGCGCCTTCGTTTTCCTCG 61.838 55.000 4.18 0.00 38.14 4.63
562 2514 1.956620 GCGCCTTCGTTTTCCTCGAG 61.957 60.000 5.13 5.13 38.52 4.04
589 2541 7.687941 ATCATCTCGGAAATAAAACAGTTGT 57.312 32.000 0.00 0.00 0.00 3.32
643 2595 8.655970 TCAGAGTGAAAAATACATGTTATGTCG 58.344 33.333 2.30 0.00 43.67 4.35
644 2596 8.655970 CAGAGTGAAAAATACATGTTATGTCGA 58.344 33.333 2.30 0.00 43.67 4.20
645 2597 8.656849 AGAGTGAAAAATACATGTTATGTCGAC 58.343 33.333 9.11 9.11 43.67 4.20
646 2598 8.317891 AGTGAAAAATACATGTTATGTCGACA 57.682 30.769 22.48 22.48 43.67 4.35
647 2599 8.779303 AGTGAAAAATACATGTTATGTCGACAA 58.221 29.630 24.13 6.18 43.67 3.18
648 2600 9.554724 GTGAAAAATACATGTTATGTCGACAAT 57.445 29.630 24.13 13.42 43.67 2.71
649 2601 9.553418 TGAAAAATACATGTTATGTCGACAATG 57.447 29.630 24.13 22.21 43.67 2.82
650 2602 9.767684 GAAAAATACATGTTATGTCGACAATGA 57.232 29.630 26.67 13.03 43.67 2.57
651 2603 9.554724 AAAAATACATGTTATGTCGACAATGAC 57.445 29.630 26.67 21.92 43.67 3.06
652 2604 4.840401 ACATGTTATGTCGACAATGACG 57.160 40.909 26.67 15.63 39.92 4.35
656 2608 0.171679 TATGTCGACAATGACGGCGT 59.828 50.000 24.13 14.65 41.87 5.68
658 2610 1.443872 GTCGACAATGACGGCGTCT 60.444 57.895 36.17 19.67 33.15 4.18
659 2611 1.443702 TCGACAATGACGGCGTCTG 60.444 57.895 36.17 29.12 33.15 3.51
670 2622 2.355837 GCGTCTGTGGCGACTTCA 60.356 61.111 0.00 0.00 0.00 3.02
671 2623 2.658707 GCGTCTGTGGCGACTTCAC 61.659 63.158 0.00 0.00 35.82 3.18
672 2624 1.299850 CGTCTGTGGCGACTTCACA 60.300 57.895 0.00 0.00 42.11 3.58
677 2629 2.146342 CTGTGGCGACTTCACAAATCT 58.854 47.619 0.00 0.00 43.45 2.40
689 2641 8.274248 CGACTTCACAAATCTCAAGATGATATG 58.726 37.037 0.00 0.00 34.49 1.78
693 2651 6.485648 TCACAAATCTCAAGATGATATGCAGG 59.514 38.462 0.00 0.00 34.49 4.85
704 2662 1.419387 GATATGCAGGCTCTTGGAGGT 59.581 52.381 0.00 0.00 0.00 3.85
706 2664 2.045536 GCAGGCTCTTGGAGGTGG 60.046 66.667 0.00 0.00 0.00 4.61
708 2666 1.763770 CAGGCTCTTGGAGGTGGTT 59.236 57.895 0.00 0.00 0.00 3.67
712 2670 3.041946 AGGCTCTTGGAGGTGGTTATAG 58.958 50.000 0.00 0.00 0.00 1.31
723 2681 2.970640 GGTGGTTATAGGGGGTAGAGTG 59.029 54.545 0.00 0.00 0.00 3.51
730 2688 2.280552 GGGGGTAGAGTGTGCGTGA 61.281 63.158 0.00 0.00 0.00 4.35
731 2689 1.669440 GGGGTAGAGTGTGCGTGAA 59.331 57.895 0.00 0.00 0.00 3.18
732 2690 0.034337 GGGGTAGAGTGTGCGTGAAA 59.966 55.000 0.00 0.00 0.00 2.69
744 2702 1.501741 CGTGAAAGCGTTCATGGGG 59.498 57.895 22.35 8.46 45.38 4.96
745 2703 1.234615 CGTGAAAGCGTTCATGGGGT 61.235 55.000 22.35 0.00 45.38 4.95
746 2704 0.240945 GTGAAAGCGTTCATGGGGTG 59.759 55.000 18.04 0.00 45.38 4.61
748 2706 1.595093 GAAAGCGTTCATGGGGTGGG 61.595 60.000 7.56 0.00 33.61 4.61
749 2707 2.366153 AAAGCGTTCATGGGGTGGGT 62.366 55.000 0.00 0.00 0.00 4.51
750 2708 3.061848 GCGTTCATGGGGTGGGTG 61.062 66.667 0.00 0.00 0.00 4.61
751 2709 3.061848 CGTTCATGGGGTGGGTGC 61.062 66.667 0.00 0.00 0.00 5.01
752 2710 2.117206 GTTCATGGGGTGGGTGCA 59.883 61.111 0.00 0.00 0.00 4.57
753 2711 1.305213 GTTCATGGGGTGGGTGCAT 60.305 57.895 0.00 0.00 0.00 3.96
754 2712 1.305129 TTCATGGGGTGGGTGCATG 60.305 57.895 0.00 0.00 0.00 4.06
755 2713 3.463585 CATGGGGTGGGTGCATGC 61.464 66.667 11.82 11.82 0.00 4.06
756 2714 3.675790 ATGGGGTGGGTGCATGCT 61.676 61.111 20.33 0.00 0.00 3.79
757 2715 3.667217 ATGGGGTGGGTGCATGCTC 62.667 63.158 20.33 15.68 0.00 4.26
758 2716 4.365111 GGGGTGGGTGCATGCTCA 62.365 66.667 20.33 11.71 0.00 4.26
759 2717 2.043652 GGGTGGGTGCATGCTCAT 60.044 61.111 20.33 0.00 0.00 2.90
760 2718 2.420568 GGGTGGGTGCATGCTCATG 61.421 63.158 20.33 5.53 41.60 3.07
761 2719 1.679977 GGTGGGTGCATGCTCATGT 60.680 57.895 20.33 0.00 40.80 3.21
762 2720 0.394216 GGTGGGTGCATGCTCATGTA 60.394 55.000 20.33 4.29 40.80 2.29
763 2721 1.683943 GTGGGTGCATGCTCATGTAT 58.316 50.000 20.33 0.00 40.80 2.29
764 2722 2.026641 GTGGGTGCATGCTCATGTATT 58.973 47.619 20.33 0.00 40.80 1.89
769 2727 3.243301 GGTGCATGCTCATGTATTTGAGG 60.243 47.826 20.33 0.00 42.78 3.86
775 2733 4.922206 TGCTCATGTATTTGAGGGACTTT 58.078 39.130 3.85 0.00 41.55 2.66
785 2743 7.606456 TGTATTTGAGGGACTTTGATTGTACTC 59.394 37.037 0.00 0.00 41.55 2.59
786 2744 5.825593 TTGAGGGACTTTGATTGTACTCT 57.174 39.130 0.00 0.00 41.55 3.24
788 2746 3.935828 GAGGGACTTTGATTGTACTCTGC 59.064 47.826 0.00 0.00 41.55 4.26
839 2821 7.380536 TGCATTTGAGACTTAGAAATTGCATT 58.619 30.769 0.00 0.00 0.00 3.56
894 2876 3.257561 CCGATTCGCTCACTGCCG 61.258 66.667 0.00 0.00 38.78 5.69
1206 3198 3.845259 GCCATCCGCGGTGTCCTA 61.845 66.667 27.15 4.32 0.00 2.94
1328 3320 4.554363 CGTCTACAGCGCGAGGGG 62.554 72.222 12.10 0.00 0.00 4.79
1383 3375 1.153429 GGTTAAGGCCGCGATGACT 60.153 57.895 8.23 0.00 0.00 3.41
1505 3497 3.213506 TGATGTGTTATGGGTGCATAGC 58.786 45.455 0.00 0.00 0.00 2.97
1561 3553 3.197790 CACGGAAGGGCGCATCTG 61.198 66.667 10.83 12.73 0.00 2.90
1593 3585 3.119173 TCCAAAATGAATGCTAAAGCCGG 60.119 43.478 0.00 0.00 41.18 6.13
1605 3599 4.202161 TGCTAAAGCCGGAAAATTCAAACA 60.202 37.500 5.05 0.00 41.18 2.83
1632 3626 8.135529 CGTACAATGATGTCTTACCATTCTCTA 58.864 37.037 0.00 0.00 41.05 2.43
1782 3838 7.941790 TGTGCATATCATTAGCTTTGGGTTATA 59.058 33.333 0.00 0.00 0.00 0.98
1783 3839 8.960591 GTGCATATCATTAGCTTTGGGTTATAT 58.039 33.333 0.00 0.00 0.00 0.86
1852 3908 7.890515 TGTGTTTGGATGATTTAGTTTATGCA 58.109 30.769 0.00 0.00 0.00 3.96
1893 3949 1.003580 CTGCTGTACCACTTCCACCAT 59.996 52.381 0.00 0.00 0.00 3.55
1894 3950 1.271325 TGCTGTACCACTTCCACCATG 60.271 52.381 0.00 0.00 0.00 3.66
1895 3951 1.271379 GCTGTACCACTTCCACCATGT 60.271 52.381 0.00 0.00 0.00 3.21
1896 3952 2.426522 CTGTACCACTTCCACCATGTG 58.573 52.381 0.00 0.00 0.00 3.21
1897 3953 2.038426 CTGTACCACTTCCACCATGTGA 59.962 50.000 0.00 0.00 35.23 3.58
1937 3994 8.600668 AGATATGCTACCTGATGAAACATGTAT 58.399 33.333 0.00 0.00 0.00 2.29
1944 4002 6.000219 ACCTGATGAAACATGTATGATAGGC 59.000 40.000 0.00 0.00 0.00 3.93
1952 4010 9.194972 TGAAACATGTATGATAGGCCATTTTAA 57.805 29.630 5.01 0.00 0.00 1.52
1995 4221 8.548025 TGAGGATTTTTCCATAGTAGATGACAA 58.452 33.333 0.00 0.00 0.00 3.18
2024 4250 7.231467 ACATAGTTTGTGGGATACAGAAAACT 58.769 34.615 10.84 10.84 43.02 2.66
2025 4251 7.724061 ACATAGTTTGTGGGATACAGAAAACTT 59.276 33.333 11.14 1.84 43.02 2.66
2078 4304 7.263100 TCATGCTTTTGCCTGTACTATTATG 57.737 36.000 0.00 0.00 46.87 1.90
2100 4326 5.587289 TGTTATTCTGTTTTGCTGGTTCAC 58.413 37.500 0.00 0.00 0.00 3.18
2127 4353 9.669353 CAAATTCAACTGCATGGTTATAGTATC 57.331 33.333 0.00 0.00 0.00 2.24
2133 4359 5.409520 ACTGCATGGTTATAGTATCATTGCG 59.590 40.000 0.00 0.00 0.00 4.85
2135 4361 6.459923 TGCATGGTTATAGTATCATTGCGTA 58.540 36.000 0.00 0.00 0.00 4.42
2136 4362 6.367695 TGCATGGTTATAGTATCATTGCGTAC 59.632 38.462 0.00 0.00 0.00 3.67
2137 4363 6.367695 GCATGGTTATAGTATCATTGCGTACA 59.632 38.462 0.00 0.00 0.00 2.90
2142 4368 8.485591 GGTTATAGTATCATTGCGTACACTTTC 58.514 37.037 0.00 0.00 0.00 2.62
2216 4444 0.597637 ACGTGTCACTGTGCTGTAGC 60.598 55.000 2.12 0.00 42.50 3.58
2220 4448 1.272781 GTCACTGTGCTGTAGCGATC 58.727 55.000 2.12 0.00 45.83 3.69
2231 4459 3.550275 GCTGTAGCGATCGTGATTGTTTA 59.450 43.478 17.81 0.00 0.00 2.01
2232 4460 4.032445 GCTGTAGCGATCGTGATTGTTTAA 59.968 41.667 17.81 0.00 0.00 1.52
2276 4504 8.499403 AAGATGAATACTCCTTTTGTTAGCTC 57.501 34.615 0.00 0.00 0.00 4.09
2284 4512 2.416431 CCTTTTGTTAGCTCATGCAGGC 60.416 50.000 0.00 0.00 42.74 4.85
2297 4525 3.801307 ATGCAGGCCATGATGATTCTA 57.199 42.857 5.01 0.00 31.48 2.10
2298 4526 2.854963 TGCAGGCCATGATGATTCTAC 58.145 47.619 5.01 0.00 0.00 2.59
2311 4539 7.881775 TGATGATTCTACTAGCTGACTGTAA 57.118 36.000 0.00 0.00 0.00 2.41
2316 4544 9.944376 TGATTCTACTAGCTGACTGTAATTTTT 57.056 29.630 0.00 0.00 0.00 1.94
2339 4567 9.494271 TTTTATGCAGTTTTATGTTAATTGGCA 57.506 25.926 0.00 0.00 0.00 4.92
2419 4647 5.520748 ACAGACCTCCTAATCCACAATTT 57.479 39.130 0.00 0.00 0.00 1.82
2460 4688 8.686334 TGCCTTTCTGGTTGAAGATAATTAATC 58.314 33.333 0.00 0.00 38.35 1.75
2495 4723 2.361119 TGCAGTGTACATAGGTCGGATC 59.639 50.000 0.00 0.00 0.00 3.36
2497 4725 3.795826 GCAGTGTACATAGGTCGGATCAC 60.796 52.174 0.00 0.00 0.00 3.06
2508 4736 3.711704 AGGTCGGATCACCATGACTTTAT 59.288 43.478 5.11 0.00 39.16 1.40
2543 4771 4.033009 TGCTCTGAGATCCTCCACATAAA 58.967 43.478 9.28 0.00 0.00 1.40
2548 4776 6.351711 TCTGAGATCCTCCACATAAATGTTG 58.648 40.000 0.00 0.00 39.39 3.33
2549 4777 4.883585 TGAGATCCTCCACATAAATGTTGC 59.116 41.667 0.00 0.00 39.39 4.17
2550 4778 3.879295 AGATCCTCCACATAAATGTTGCG 59.121 43.478 0.00 0.00 39.39 4.85
2552 4780 3.680490 TCCTCCACATAAATGTTGCGAA 58.320 40.909 0.00 0.00 39.39 4.70
2556 4784 5.868801 CCTCCACATAAATGTTGCGAAAAAT 59.131 36.000 0.00 0.00 39.39 1.82
2558 4786 7.009174 CCTCCACATAAATGTTGCGAAAAATAC 59.991 37.037 0.00 0.00 39.39 1.89
2559 4787 7.598278 TCCACATAAATGTTGCGAAAAATACT 58.402 30.769 0.00 0.00 39.39 2.12
2666 5158 1.281925 CCCAGGAGTGGTGCCCTTAT 61.282 60.000 0.00 0.00 43.23 1.73
2709 5203 6.935208 AGTTGGAGGTTTAACAGTCAGTATTC 59.065 38.462 0.00 0.00 0.00 1.75
2804 5306 4.694177 CGTACAACGAAACACCATAACAG 58.306 43.478 0.00 0.00 46.05 3.16
2805 5307 4.209703 CGTACAACGAAACACCATAACAGT 59.790 41.667 0.00 0.00 46.05 3.55
2806 5308 5.401972 CGTACAACGAAACACCATAACAGTA 59.598 40.000 0.00 0.00 46.05 2.74
2808 5310 4.212636 ACAACGAAACACCATAACAGTAGC 59.787 41.667 0.00 0.00 0.00 3.58
2809 5311 3.997762 ACGAAACACCATAACAGTAGCA 58.002 40.909 0.00 0.00 0.00 3.49
2810 5312 4.382291 ACGAAACACCATAACAGTAGCAA 58.618 39.130 0.00 0.00 0.00 3.91
2811 5313 5.001232 ACGAAACACCATAACAGTAGCAAT 58.999 37.500 0.00 0.00 0.00 3.56
2812 5314 6.167685 ACGAAACACCATAACAGTAGCAATA 58.832 36.000 0.00 0.00 0.00 1.90
2813 5315 6.091713 ACGAAACACCATAACAGTAGCAATAC 59.908 38.462 0.00 0.00 0.00 1.89
2814 5316 6.312918 CGAAACACCATAACAGTAGCAATACT 59.687 38.462 0.00 0.00 0.00 2.12
2869 5371 6.003326 CCATGCCCATATATACTCACAAACA 58.997 40.000 0.00 0.00 0.00 2.83
2870 5372 6.660521 CCATGCCCATATATACTCACAAACAT 59.339 38.462 0.00 0.00 0.00 2.71
2873 5375 7.286313 TGCCCATATATACTCACAAACATTCA 58.714 34.615 0.00 0.00 0.00 2.57
2937 5439 2.276201 TGAACGTTGTTGGTCTGACAG 58.724 47.619 5.00 0.00 0.00 3.51
2940 5442 1.206132 ACGTTGTTGGTCTGACAGACA 59.794 47.619 31.35 17.73 46.79 3.41
2941 5443 2.158957 ACGTTGTTGGTCTGACAGACAT 60.159 45.455 31.35 8.08 46.79 3.06
2975 5480 6.423182 TCTCCTCTCTAAGAGAAGAGAAAGG 58.577 44.000 17.11 10.86 46.70 3.11
3035 5542 7.393515 ACTTTTGGTAGAGTCTCTTGTTGTTTT 59.606 33.333 7.89 0.00 0.00 2.43
3141 5657 5.647589 TGTCTAGACAACGGTTATAAGCAG 58.352 41.667 23.24 9.54 38.56 4.24
3287 5809 6.862711 TTGTGTCGTACAACCATCATAAAA 57.137 33.333 4.34 0.00 44.07 1.52
3349 5871 5.238432 GCCAAAATAAAGAAAACCTGGGTTG 59.762 40.000 0.00 0.00 38.47 3.77
3358 5880 2.627771 ACCTGGGTTGGTTGAGACA 58.372 52.632 0.00 0.00 36.89 3.41
3405 5938 6.469410 TCGGAGTTGTCTTATAAACATTGGT 58.531 36.000 2.66 0.00 0.00 3.67
3406 5939 6.370442 TCGGAGTTGTCTTATAAACATTGGTG 59.630 38.462 2.66 0.00 0.00 4.17
3410 5943 6.780522 AGTTGTCTTATAAACATTGGTGGGTT 59.219 34.615 2.66 0.00 0.00 4.11
3414 5947 5.712917 TCTTATAAACATTGGTGGGTTGGAC 59.287 40.000 0.00 0.00 0.00 4.02
3437 5971 6.996509 ACATTTGATGCTGTTTTCCACTATT 58.003 32.000 0.00 0.00 0.00 1.73
3470 6005 9.603189 ATGTAGGGTATATATATTGGGTCTAGC 57.397 37.037 0.00 0.00 0.00 3.42
3487 6022 3.569916 GCATACTGCGCTACTGCTA 57.430 52.632 9.73 0.00 36.97 3.49
3512 6047 2.630580 TGAGGCCCAAAATGGTTACAAC 59.369 45.455 0.00 0.00 35.17 3.32
3608 6248 2.182827 TGGAAGAGGTGATGGACTGAG 58.817 52.381 0.00 0.00 0.00 3.35
3609 6249 2.183679 GGAAGAGGTGATGGACTGAGT 58.816 52.381 0.00 0.00 0.00 3.41
3649 6289 7.437713 TGGTTACAGATTATCCATGAGTCTT 57.562 36.000 0.00 0.00 0.00 3.01
3719 6359 1.115326 ACTTCCCCTTTTGGCTGTGC 61.115 55.000 0.00 0.00 38.58 4.57
3728 6368 3.507233 CCTTTTGGCTGTGCTCTTCATTA 59.493 43.478 0.00 0.00 0.00 1.90
3739 6379 7.517614 TGTGCTCTTCATTATTGTTTGGTAA 57.482 32.000 0.00 0.00 0.00 2.85
3862 6503 4.801521 AGTTTACCTGGGGTAAGTTTGT 57.198 40.909 8.81 0.00 46.91 2.83
3878 6519 7.393515 GGTAAGTTTGTTCACATTCCTTAGGAT 59.606 37.037 0.12 0.00 0.00 3.24
3882 6523 8.960591 AGTTTGTTCACATTCCTTAGGATAATG 58.039 33.333 0.12 6.60 36.80 1.90
3915 6558 6.644347 ACTCTATTGGTCTAACTGTCATTGG 58.356 40.000 0.00 0.00 0.00 3.16
3924 6567 8.204160 TGGTCTAACTGTCATTGGTATTCTATG 58.796 37.037 0.00 0.00 0.00 2.23
3925 6568 7.171678 GGTCTAACTGTCATTGGTATTCTATGC 59.828 40.741 0.00 0.00 0.00 3.14
3926 6569 7.171678 GTCTAACTGTCATTGGTATTCTATGCC 59.828 40.741 0.00 0.00 35.37 4.40
3927 6570 5.372343 ACTGTCATTGGTATTCTATGCCA 57.628 39.130 0.00 0.00 43.59 4.92
3928 6571 5.126067 ACTGTCATTGGTATTCTATGCCAC 58.874 41.667 0.00 0.00 45.00 5.01
3930 6573 4.080072 TGTCATTGGTATTCTATGCCACCA 60.080 41.667 0.00 0.00 45.00 4.17
3931 6574 5.072741 GTCATTGGTATTCTATGCCACCAT 58.927 41.667 0.00 0.00 45.00 3.55
3932 6575 5.536161 GTCATTGGTATTCTATGCCACCATT 59.464 40.000 0.00 0.00 45.00 3.16
3933 6576 6.040842 GTCATTGGTATTCTATGCCACCATTT 59.959 38.462 0.00 0.00 45.00 2.32
3934 6577 5.850557 TTGGTATTCTATGCCACCATTTG 57.149 39.130 0.00 0.00 45.00 2.32
3957 6600 6.173339 TGATTTGAACTCTAGCCTTTAGGTG 58.827 40.000 0.00 0.00 37.57 4.00
3966 6609 3.577805 AGCCTTTAGGTGTGTCTTGTT 57.422 42.857 0.00 0.00 37.57 2.83
3979 6622 6.252655 GGTGTGTCTTGTTTTATTGTTGTCAC 59.747 38.462 0.00 0.00 0.00 3.67
3987 6630 7.881643 TGTTTTATTGTTGTCACATTATGCC 57.118 32.000 0.00 0.00 31.06 4.40
4000 6643 2.928801 TTATGCCGCCATCTACACAT 57.071 45.000 0.00 0.00 32.85 3.21
4001 6644 2.168326 TATGCCGCCATCTACACATG 57.832 50.000 0.00 0.00 32.85 3.21
4011 6655 6.407412 CCGCCATCTACACATGATATATCCTT 60.407 42.308 10.25 0.00 0.00 3.36
4014 6662 8.887717 GCCATCTACACATGATATATCCTTTTC 58.112 37.037 10.25 0.00 0.00 2.29
4015 6663 9.091784 CCATCTACACATGATATATCCTTTTCG 57.908 37.037 10.25 0.00 0.00 3.46
4022 6670 5.611796 TGATATATCCTTTTCGTGCATGC 57.388 39.130 11.82 11.82 0.00 4.06
4025 6673 2.119801 ATCCTTTTCGTGCATGCTCT 57.880 45.000 20.33 0.00 0.00 4.09
4034 6682 1.260825 CGTGCATGCTCTGATGATGTC 59.739 52.381 20.33 0.00 0.00 3.06
4039 6687 3.487042 GCATGCTCTGATGATGTCAACAC 60.487 47.826 11.37 0.00 36.14 3.32
4063 6711 5.728637 AATACCCTTTTTGCTGGAAAGAG 57.271 39.130 5.38 5.38 36.45 2.85
4066 6714 3.889538 ACCCTTTTTGCTGGAAAGAGTAC 59.110 43.478 10.46 0.00 36.45 2.73
4108 6756 4.805719 TGCAGTTCATTTGCGATAGACTAG 59.194 41.667 0.00 0.00 44.40 2.57
4129 6777 1.065126 AGTGGATAACTTGCTGGCTCC 60.065 52.381 0.00 0.00 34.57 4.70
4151 6799 5.065914 CCGATTATCATCACCTGGAATGTT 58.934 41.667 0.00 2.04 0.00 2.71
4155 6803 8.088365 CGATTATCATCACCTGGAATGTTACTA 58.912 37.037 0.00 0.00 0.00 1.82
4183 6831 4.915085 CACTTTTGGGCAAGTGTTATTACG 59.085 41.667 7.77 0.00 45.93 3.18
4193 6841 6.259167 GGCAAGTGTTATTACGGATAATGTGA 59.741 38.462 0.00 0.00 33.03 3.58
4194 6842 7.041372 GGCAAGTGTTATTACGGATAATGTGAT 60.041 37.037 0.00 0.00 33.03 3.06
4224 6872 1.388093 CTTGCTGATTGACAGTCGTCG 59.612 52.381 0.00 0.00 45.80 5.12
4225 6873 0.596082 TGCTGATTGACAGTCGTCGA 59.404 50.000 0.00 0.00 45.80 4.20
4226 6874 0.985549 GCTGATTGACAGTCGTCGAC 59.014 55.000 17.70 17.70 45.80 4.20
4237 6889 3.058639 ACAGTCGTCGACTAGTGTTTACC 60.059 47.826 26.54 0.00 41.37 2.85
4243 6895 5.470098 TCGTCGACTAGTGTTTACCTTAGTT 59.530 40.000 14.70 0.00 0.00 2.24
4274 6926 6.620877 AAACATCTGTCCAGTAATCCAGTA 57.379 37.500 0.00 0.00 0.00 2.74
4281 6933 6.670464 TCTGTCCAGTAATCCAGTATAAACCA 59.330 38.462 0.00 0.00 0.00 3.67
4284 6936 7.990886 TGTCCAGTAATCCAGTATAAACCATTC 59.009 37.037 0.00 0.00 0.00 2.67
4320 6972 6.588204 ACATGACTTGTTACCTAACACTCAA 58.412 36.000 0.00 0.00 45.01 3.02
4334 6986 9.396022 ACCTAACACTCAAATTGAATACCTATG 57.604 33.333 0.00 0.00 0.00 2.23
4361 7013 9.588096 AAATAGTTTGGTAAGGAGTCATTTTCT 57.412 29.630 0.00 0.00 0.00 2.52
4366 7018 3.619038 GGTAAGGAGTCATTTTCTCTGCG 59.381 47.826 0.00 0.00 33.06 5.18
4376 7028 3.401033 TTTTCTCTGCGACCTGAATGA 57.599 42.857 0.00 0.00 0.00 2.57
4577 7256 1.183549 GCCCGTCTCTTCTTGGTAGA 58.816 55.000 0.00 0.00 0.00 2.59
4598 7277 4.877823 AGATCATGCGTGCTTAAGATGAAA 59.122 37.500 6.67 0.00 0.00 2.69
4599 7278 5.530171 AGATCATGCGTGCTTAAGATGAAAT 59.470 36.000 6.67 0.00 0.00 2.17
4640 7319 0.036010 ACAGCCTAGTGTCATGTGCC 60.036 55.000 0.00 0.00 0.00 5.01
4735 7414 2.738521 CGTCAGCTCCACGGGTTG 60.739 66.667 6.81 0.00 33.46 3.77
4747 7426 2.280592 GGGTTGTCGGCGTCAGTT 60.281 61.111 6.85 0.00 0.00 3.16
4785 7469 2.623878 TTCTTGCCGAACCTGTTGTA 57.376 45.000 0.00 0.00 0.00 2.41
4812 7496 2.818432 CCTCTTGCTGCAGAAATCAACT 59.182 45.455 20.43 0.00 0.00 3.16
4827 7511 6.317893 AGAAATCAACTGTTTTAGTCGGTTGT 59.682 34.615 14.42 3.50 46.21 3.32
4828 7512 6.445357 AATCAACTGTTTTAGTCGGTTGTT 57.555 33.333 14.42 6.49 46.21 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.071616 TGTCTATTGTTTTGGACTTAATGGGC 60.072 38.462 0.00 0.00 0.00 5.36
2 3 9.410556 CTTTGTCTATTGTTTTGGACTTAATGG 57.589 33.333 0.00 0.00 0.00 3.16
6 7 8.780249 GCTACTTTGTCTATTGTTTTGGACTTA 58.220 33.333 0.00 0.00 0.00 2.24
8 9 6.770785 TGCTACTTTGTCTATTGTTTTGGACT 59.229 34.615 0.00 0.00 0.00 3.85
9 10 6.966021 TGCTACTTTGTCTATTGTTTTGGAC 58.034 36.000 0.00 0.00 0.00 4.02
10 11 7.309133 CCATGCTACTTTGTCTATTGTTTTGGA 60.309 37.037 0.00 0.00 0.00 3.53
11 12 6.808212 CCATGCTACTTTGTCTATTGTTTTGG 59.192 38.462 0.00 0.00 0.00 3.28
12 13 7.592938 TCCATGCTACTTTGTCTATTGTTTTG 58.407 34.615 0.00 0.00 0.00 2.44
13 14 7.575720 GCTCCATGCTACTTTGTCTATTGTTTT 60.576 37.037 0.00 0.00 38.95 2.43
14 15 6.127897 GCTCCATGCTACTTTGTCTATTGTTT 60.128 38.462 0.00 0.00 38.95 2.83
15 16 5.355350 GCTCCATGCTACTTTGTCTATTGTT 59.645 40.000 0.00 0.00 38.95 2.83
18 19 5.102953 TGCTCCATGCTACTTTGTCTATT 57.897 39.130 0.00 0.00 43.37 1.73
19 20 4.760530 TGCTCCATGCTACTTTGTCTAT 57.239 40.909 0.00 0.00 43.37 1.98
20 21 4.551702 TTGCTCCATGCTACTTTGTCTA 57.448 40.909 0.00 0.00 43.37 2.59
21 22 3.423539 TTGCTCCATGCTACTTTGTCT 57.576 42.857 0.00 0.00 43.37 3.41
23 24 3.689347 TGATTGCTCCATGCTACTTTGT 58.311 40.909 0.00 0.00 43.37 2.83
25 26 5.244626 AGTTTTGATTGCTCCATGCTACTTT 59.755 36.000 0.00 0.00 43.37 2.66
26 27 4.768968 AGTTTTGATTGCTCCATGCTACTT 59.231 37.500 0.00 0.00 43.37 2.24
28 29 4.439289 GGAGTTTTGATTGCTCCATGCTAC 60.439 45.833 5.08 0.00 45.93 3.58
29 30 3.696051 GGAGTTTTGATTGCTCCATGCTA 59.304 43.478 5.08 0.00 45.93 3.49
30 31 2.494870 GGAGTTTTGATTGCTCCATGCT 59.505 45.455 5.08 0.00 45.93 3.79
31 32 2.884827 GGAGTTTTGATTGCTCCATGC 58.115 47.619 5.08 0.00 45.93 4.06
36 37 5.449725 GCTATTGGAGGAGTTTTGATTGCTC 60.450 44.000 0.00 0.00 0.00 4.26
37 38 4.400567 GCTATTGGAGGAGTTTTGATTGCT 59.599 41.667 0.00 0.00 0.00 3.91
38 39 4.158394 TGCTATTGGAGGAGTTTTGATTGC 59.842 41.667 0.00 0.00 0.00 3.56
39 40 5.902613 TGCTATTGGAGGAGTTTTGATTG 57.097 39.130 0.00 0.00 0.00 2.67
41 42 5.297776 CGAATGCTATTGGAGGAGTTTTGAT 59.702 40.000 0.00 0.00 0.00 2.57
44 45 4.843728 TCGAATGCTATTGGAGGAGTTTT 58.156 39.130 0.00 0.00 0.00 2.43
45 46 4.487714 TCGAATGCTATTGGAGGAGTTT 57.512 40.909 0.00 0.00 0.00 2.66
46 47 4.696479 ATCGAATGCTATTGGAGGAGTT 57.304 40.909 0.00 0.00 0.00 3.01
47 48 4.141620 ACAATCGAATGCTATTGGAGGAGT 60.142 41.667 0.00 0.00 37.40 3.85
51 52 5.490139 ACAACAATCGAATGCTATTGGAG 57.510 39.130 0.00 0.00 37.40 3.86
64 446 7.730067 TTAGACACTAATCGTACAACAATCG 57.270 36.000 0.00 0.00 0.00 3.34
94 476 2.160205 GGCACCCCTCTAGTTTTCAAC 58.840 52.381 0.00 0.00 0.00 3.18
97 479 2.026262 TCATGGCACCCCTCTAGTTTTC 60.026 50.000 0.00 0.00 0.00 2.29
98 480 1.992557 TCATGGCACCCCTCTAGTTTT 59.007 47.619 0.00 0.00 0.00 2.43
158 552 0.673644 ACGACAAGTGGTAGCATGCC 60.674 55.000 15.66 0.00 43.46 4.40
181 575 2.575735 TGCAACTGGTGGGAGATAATGA 59.424 45.455 0.00 0.00 0.00 2.57
185 579 0.253044 GCTGCAACTGGTGGGAGATA 59.747 55.000 0.76 0.00 0.00 1.98
186 580 1.001641 GCTGCAACTGGTGGGAGAT 60.002 57.895 0.76 0.00 0.00 2.75
192 601 3.663176 CACGGGCTGCAACTGGTG 61.663 66.667 0.50 0.00 0.00 4.17
221 630 3.672295 GAAGGAGGTGGCTCAGGCG 62.672 68.421 0.00 0.00 39.81 5.52
224 633 0.671781 CAACGAAGGAGGTGGCTCAG 60.672 60.000 0.00 0.00 0.00 3.35
226 635 0.390472 CTCAACGAAGGAGGTGGCTC 60.390 60.000 0.00 0.00 0.00 4.70
236 645 0.657368 GCGGCAACAACTCAACGAAG 60.657 55.000 0.00 0.00 0.00 3.79
240 649 2.335011 GGGCGGCAACAACTCAAC 59.665 61.111 12.47 0.00 0.00 3.18
241 650 2.909965 GGGGCGGCAACAACTCAA 60.910 61.111 12.47 0.00 0.00 3.02
263 672 2.112815 GGTTTTCGAGGGATGGGCG 61.113 63.158 0.00 0.00 0.00 6.13
274 683 1.338769 ACCGGAGAATGAGGGTTTTCG 60.339 52.381 9.46 0.00 0.00 3.46
279 688 2.670148 GGCACCGGAGAATGAGGGT 61.670 63.158 9.46 0.00 0.00 4.34
298 707 1.959989 GCCAAGGGGAGGTGGTAAATG 60.960 57.143 0.00 0.00 37.23 2.32
299 708 0.335019 GCCAAGGGGAGGTGGTAAAT 59.665 55.000 0.00 0.00 37.23 1.40
300 709 1.771646 GCCAAGGGGAGGTGGTAAA 59.228 57.895 0.00 0.00 37.23 2.01
301 710 2.598787 CGCCAAGGGGAGGTGGTAA 61.599 63.158 0.00 0.00 37.23 2.85
302 711 3.006728 CGCCAAGGGGAGGTGGTA 61.007 66.667 0.00 0.00 37.23 3.25
303 712 4.974438 TCGCCAAGGGGAGGTGGT 62.974 66.667 1.22 0.00 37.23 4.16
315 724 4.263572 CACCCACCAACCTCGCCA 62.264 66.667 0.00 0.00 0.00 5.69
330 739 1.939785 CATAGACGAGACGCCGCAC 60.940 63.158 0.00 0.00 0.00 5.34
331 740 2.407616 CATAGACGAGACGCCGCA 59.592 61.111 0.00 0.00 0.00 5.69
332 741 2.353607 CCATAGACGAGACGCCGC 60.354 66.667 0.00 0.00 0.00 6.53
333 742 2.353607 GCCATAGACGAGACGCCG 60.354 66.667 0.00 0.00 0.00 6.46
334 743 1.008309 GAGCCATAGACGAGACGCC 60.008 63.158 0.00 0.00 0.00 5.68
335 744 1.369448 CGAGCCATAGACGAGACGC 60.369 63.158 0.00 0.00 0.00 5.19
336 745 2.308344 TCGAGCCATAGACGAGACG 58.692 57.895 0.00 0.00 0.00 4.18
340 749 1.103803 AAAGCTCGAGCCATAGACGA 58.896 50.000 32.94 0.00 43.38 4.20
341 750 2.776312 TAAAGCTCGAGCCATAGACG 57.224 50.000 32.94 0.00 43.38 4.18
344 763 3.006323 AGGACATAAAGCTCGAGCCATAG 59.994 47.826 32.94 20.86 43.38 2.23
348 767 1.936547 CAAGGACATAAAGCTCGAGCC 59.063 52.381 32.94 15.87 43.38 4.70
360 779 7.580910 AGATGATTTATGGAGAACAAGGACAT 58.419 34.615 0.00 0.00 0.00 3.06
363 782 6.098266 TCGAGATGATTTATGGAGAACAAGGA 59.902 38.462 0.00 0.00 0.00 3.36
367 786 8.560355 TTTTTCGAGATGATTTATGGAGAACA 57.440 30.769 0.00 0.00 0.00 3.18
389 811 8.650143 TTAGTCTTGAGGCAATTATCCTTTTT 57.350 30.769 0.54 0.00 33.24 1.94
394 819 7.436376 GCATTTTTAGTCTTGAGGCAATTATCC 59.564 37.037 0.00 0.00 0.00 2.59
395 820 7.975616 TGCATTTTTAGTCTTGAGGCAATTATC 59.024 33.333 0.00 0.00 0.00 1.75
397 822 7.225784 TGCATTTTTAGTCTTGAGGCAATTA 57.774 32.000 0.00 0.00 0.00 1.40
432 2384 9.528489 AGTTACACAACATATATTTTCCCTTGT 57.472 29.630 0.00 0.00 37.10 3.16
504 2456 2.432146 TGGGAAAGATGAGATCTCACCG 59.568 50.000 27.37 0.00 43.11 4.94
505 2457 4.347583 AGATGGGAAAGATGAGATCTCACC 59.652 45.833 27.37 18.94 43.11 4.02
511 2463 7.457218 TCAAGCTATAGATGGGAAAGATGAGAT 59.543 37.037 3.21 0.00 0.00 2.75
512 2464 6.784473 TCAAGCTATAGATGGGAAAGATGAGA 59.216 38.462 3.21 0.00 0.00 3.27
514 2466 6.519721 GCTCAAGCTATAGATGGGAAAGATGA 60.520 42.308 3.21 0.00 38.21 2.92
515 2467 5.642919 GCTCAAGCTATAGATGGGAAAGATG 59.357 44.000 3.21 0.00 38.21 2.90
516 2468 5.803552 GCTCAAGCTATAGATGGGAAAGAT 58.196 41.667 3.21 0.00 38.21 2.40
546 2498 3.994392 TGATTTCTCGAGGAAAACGAAGG 59.006 43.478 10.91 0.00 45.56 3.46
547 2499 5.578727 AGATGATTTCTCGAGGAAAACGAAG 59.421 40.000 10.91 0.00 45.56 3.79
550 2502 5.382573 GAGATGATTTCTCGAGGAAAACG 57.617 43.478 10.91 0.00 45.56 3.60
560 2512 8.669243 ACTGTTTTATTTCCGAGATGATTTCTC 58.331 33.333 0.00 0.00 46.36 2.87
562 2514 9.065871 CAACTGTTTTATTTCCGAGATGATTTC 57.934 33.333 0.00 0.00 0.00 2.17
598 2550 9.903682 CACTCTGATATGTTTCTTTTCATTTGT 57.096 29.630 0.00 0.00 0.00 2.83
618 2570 8.655970 TCGACATAACATGTATTTTTCACTCTG 58.344 33.333 0.00 0.00 45.03 3.35
619 2571 8.656849 GTCGACATAACATGTATTTTTCACTCT 58.343 33.333 11.55 0.00 45.03 3.24
620 2572 8.440059 TGTCGACATAACATGTATTTTTCACTC 58.560 33.333 15.76 0.00 45.03 3.51
623 2575 9.553418 CATTGTCGACATAACATGTATTTTTCA 57.447 29.630 20.80 0.00 45.03 2.69
632 2584 3.544048 GCCGTCATTGTCGACATAACATG 60.544 47.826 20.80 19.06 35.54 3.21
638 2590 1.076533 GACGCCGTCATTGTCGACAT 61.077 55.000 20.80 6.88 35.54 3.06
640 2592 1.443872 AGACGCCGTCATTGTCGAC 60.444 57.895 20.65 9.11 37.69 4.20
641 2593 1.443702 CAGACGCCGTCATTGTCGA 60.444 57.895 20.65 0.00 37.69 4.20
642 2594 1.733041 ACAGACGCCGTCATTGTCG 60.733 57.895 20.65 2.90 37.69 4.35
643 2595 1.626654 CCACAGACGCCGTCATTGTC 61.627 60.000 20.65 0.00 34.60 3.18
644 2596 1.667830 CCACAGACGCCGTCATTGT 60.668 57.895 20.65 13.02 34.60 2.71
645 2597 3.027170 GCCACAGACGCCGTCATTG 62.027 63.158 20.65 14.76 34.60 2.82
646 2598 2.742372 GCCACAGACGCCGTCATT 60.742 61.111 20.65 2.03 34.60 2.57
652 2604 3.112709 GAAGTCGCCACAGACGCC 61.113 66.667 0.00 0.00 45.26 5.68
656 2608 2.143122 GATTTGTGAAGTCGCCACAGA 58.857 47.619 0.00 0.00 44.22 3.41
658 2610 2.143122 GAGATTTGTGAAGTCGCCACA 58.857 47.619 0.00 0.00 42.16 4.17
659 2611 2.143122 TGAGATTTGTGAAGTCGCCAC 58.857 47.619 0.00 0.00 35.23 5.01
670 2622 5.241064 GCCTGCATATCATCTTGAGATTTGT 59.759 40.000 0.00 0.00 31.21 2.83
671 2623 5.473846 AGCCTGCATATCATCTTGAGATTTG 59.526 40.000 0.00 0.00 31.21 2.32
672 2624 5.632118 AGCCTGCATATCATCTTGAGATTT 58.368 37.500 0.00 0.00 31.21 2.17
677 2629 4.386711 CAAGAGCCTGCATATCATCTTGA 58.613 43.478 16.24 0.00 43.95 3.02
689 2641 2.045536 CCACCTCCAAGAGCCTGC 60.046 66.667 0.00 0.00 0.00 4.85
693 2651 2.104963 CCCTATAACCACCTCCAAGAGC 59.895 54.545 0.00 0.00 0.00 4.09
704 2662 3.649843 CACACTCTACCCCCTATAACCA 58.350 50.000 0.00 0.00 0.00 3.67
706 2664 2.035576 CGCACACTCTACCCCCTATAAC 59.964 54.545 0.00 0.00 0.00 1.89
708 2666 1.216175 ACGCACACTCTACCCCCTATA 59.784 52.381 0.00 0.00 0.00 1.31
712 2670 1.823169 TTCACGCACACTCTACCCCC 61.823 60.000 0.00 0.00 0.00 5.40
723 2681 0.725784 CCATGAACGCTTTCACGCAC 60.726 55.000 7.91 0.00 44.66 5.34
730 2688 1.606313 CCCACCCCATGAACGCTTT 60.606 57.895 0.00 0.00 0.00 3.51
731 2689 2.035626 CCCACCCCATGAACGCTT 59.964 61.111 0.00 0.00 0.00 4.68
732 2690 3.256960 ACCCACCCCATGAACGCT 61.257 61.111 0.00 0.00 0.00 5.07
741 2699 3.667217 ATGAGCATGCACCCACCCC 62.667 63.158 21.98 0.00 0.00 4.95
744 2702 1.683943 ATACATGAGCATGCACCCAC 58.316 50.000 21.98 6.21 42.39 4.61
745 2703 2.427812 CAAATACATGAGCATGCACCCA 59.572 45.455 21.98 14.74 42.39 4.51
746 2704 2.689471 TCAAATACATGAGCATGCACCC 59.311 45.455 21.98 9.11 42.39 4.61
748 2706 3.243301 CCCTCAAATACATGAGCATGCAC 60.243 47.826 21.98 15.08 44.43 4.57
749 2707 2.953648 CCCTCAAATACATGAGCATGCA 59.046 45.455 21.98 0.00 44.43 3.96
750 2708 3.004106 GTCCCTCAAATACATGAGCATGC 59.996 47.826 10.51 10.51 44.43 4.06
751 2709 4.458397 AGTCCCTCAAATACATGAGCATG 58.542 43.478 8.82 8.82 44.43 4.06
752 2710 4.785346 AGTCCCTCAAATACATGAGCAT 57.215 40.909 0.00 0.00 44.43 3.79
753 2711 4.574674 AAGTCCCTCAAATACATGAGCA 57.425 40.909 0.00 0.00 44.43 4.26
754 2712 4.943705 TCAAAGTCCCTCAAATACATGAGC 59.056 41.667 0.00 0.00 44.43 4.26
755 2713 7.121759 ACAATCAAAGTCCCTCAAATACATGAG 59.878 37.037 0.00 0.00 45.19 2.90
756 2714 6.947733 ACAATCAAAGTCCCTCAAATACATGA 59.052 34.615 0.00 0.00 0.00 3.07
757 2715 7.161773 ACAATCAAAGTCCCTCAAATACATG 57.838 36.000 0.00 0.00 0.00 3.21
758 2716 8.109634 AGTACAATCAAAGTCCCTCAAATACAT 58.890 33.333 0.00 0.00 0.00 2.29
759 2717 7.458397 AGTACAATCAAAGTCCCTCAAATACA 58.542 34.615 0.00 0.00 0.00 2.29
760 2718 7.824779 AGAGTACAATCAAAGTCCCTCAAATAC 59.175 37.037 0.00 0.00 0.00 1.89
761 2719 7.824289 CAGAGTACAATCAAAGTCCCTCAAATA 59.176 37.037 0.00 0.00 0.00 1.40
762 2720 6.656693 CAGAGTACAATCAAAGTCCCTCAAAT 59.343 38.462 0.00 0.00 0.00 2.32
763 2721 5.997746 CAGAGTACAATCAAAGTCCCTCAAA 59.002 40.000 0.00 0.00 0.00 2.69
764 2722 5.551233 CAGAGTACAATCAAAGTCCCTCAA 58.449 41.667 0.00 0.00 0.00 3.02
769 2727 7.435068 TTTTAGCAGAGTACAATCAAAGTCC 57.565 36.000 0.00 0.00 0.00 3.85
797 2755 9.464248 CTCAAATGCATTTTATTTCTTTTACGC 57.536 29.630 21.95 0.00 0.00 4.42
884 2866 2.447887 CGTGTCATCGGCAGTGAGC 61.448 63.158 0.00 0.00 44.65 4.26
1245 3237 1.687840 CACCCAGTACGATCCCCCA 60.688 63.158 0.00 0.00 0.00 4.96
1251 3243 4.157120 GGCGGCACCCAGTACGAT 62.157 66.667 3.07 0.00 0.00 3.73
1308 3300 2.277373 CTCGCGCTGTAGACGACC 60.277 66.667 5.56 0.00 0.00 4.79
1338 3330 3.592814 CTCGCCATCTCCGCCGTA 61.593 66.667 0.00 0.00 0.00 4.02
1356 3348 1.000359 GGCCTTAACCATGGTGGCT 60.000 57.895 32.47 16.75 42.67 4.75
1383 3375 0.621571 AGCACATGGCCTCCTCCTTA 60.622 55.000 3.32 0.00 46.50 2.69
1470 3462 4.297299 ACACATCATCATTTCGCAATCC 57.703 40.909 0.00 0.00 0.00 3.01
1505 3497 2.438075 GGCAGCTCAGCTCCAAGG 60.438 66.667 0.00 0.00 36.40 3.61
1569 3561 4.505191 CGGCTTTAGCATTCATTTTGGATG 59.495 41.667 3.88 0.00 44.36 3.51
1574 3566 4.799564 TTCCGGCTTTAGCATTCATTTT 57.200 36.364 0.00 0.00 44.36 1.82
1593 3585 8.280909 ACATCATTGTACGTGTTTGAATTTTC 57.719 30.769 0.00 0.00 33.16 2.29
1605 3599 6.640518 AGAATGGTAAGACATCATTGTACGT 58.359 36.000 0.00 0.00 35.79 3.57
1782 3838 6.625740 GCAATTTATCAGGCACCGCATAATAT 60.626 38.462 0.00 0.00 0.00 1.28
1783 3839 5.335583 GCAATTTATCAGGCACCGCATAATA 60.336 40.000 0.00 0.00 0.00 0.98
1864 3920 6.719370 TGGAAGTGGTACAGCAGAAAAATAAT 59.281 34.615 0.00 0.00 41.80 1.28
1865 3921 6.016610 GTGGAAGTGGTACAGCAGAAAAATAA 60.017 38.462 0.00 0.00 41.80 1.40
1866 3922 5.472137 GTGGAAGTGGTACAGCAGAAAAATA 59.528 40.000 0.00 0.00 41.80 1.40
1867 3923 4.278419 GTGGAAGTGGTACAGCAGAAAAAT 59.722 41.667 0.00 0.00 41.80 1.82
1868 3924 3.630312 GTGGAAGTGGTACAGCAGAAAAA 59.370 43.478 0.00 0.00 41.80 1.94
1882 3938 6.331369 ACTAAATTTCACATGGTGGAAGTG 57.669 37.500 0.00 0.00 34.27 3.16
1893 3949 8.439971 AGCATATCTCCCATACTAAATTTCACA 58.560 33.333 0.00 0.00 0.00 3.58
1894 3950 8.854614 AGCATATCTCCCATACTAAATTTCAC 57.145 34.615 0.00 0.00 0.00 3.18
1895 3951 9.944376 GTAGCATATCTCCCATACTAAATTTCA 57.056 33.333 0.00 0.00 0.00 2.69
1896 3952 9.384764 GGTAGCATATCTCCCATACTAAATTTC 57.615 37.037 0.00 0.00 0.00 2.17
1897 3953 9.117223 AGGTAGCATATCTCCCATACTAAATTT 57.883 33.333 0.00 0.00 0.00 1.82
1937 3994 9.569074 TCCTATACCTATTAAAATGGCCTATCA 57.431 33.333 3.32 0.00 0.00 2.15
1991 4217 5.957842 TCCCACAAACTATGTCATTTGTC 57.042 39.130 0.95 0.00 45.05 3.18
1995 4221 6.957631 TCTGTATCCCACAAACTATGTCATT 58.042 36.000 0.00 0.00 41.46 2.57
2025 4251 9.519191 TGGAACAGAGAAAAATGATTTATCAGA 57.481 29.630 0.00 0.00 40.64 3.27
2078 4304 4.982295 GGTGAACCAGCAAAACAGAATAAC 59.018 41.667 0.00 0.00 35.64 1.89
2100 4326 6.866480 ACTATAACCATGCAGTTGAATTTGG 58.134 36.000 1.78 0.00 0.00 3.28
2127 4353 5.218885 TCCATTTTGAAAGTGTACGCAATG 58.781 37.500 9.48 8.31 0.00 2.82
2133 4359 6.908825 TGCACTATCCATTTTGAAAGTGTAC 58.091 36.000 0.00 0.00 37.31 2.90
2135 4361 5.536161 ACTGCACTATCCATTTTGAAAGTGT 59.464 36.000 0.00 0.00 37.31 3.55
2136 4362 6.017400 ACTGCACTATCCATTTTGAAAGTG 57.983 37.500 0.00 0.00 37.87 3.16
2137 4363 6.655078 AACTGCACTATCCATTTTGAAAGT 57.345 33.333 0.00 0.00 0.00 2.66
2142 4368 6.741992 TCACTAACTGCACTATCCATTTTG 57.258 37.500 0.00 0.00 0.00 2.44
2178 4405 3.378112 ACGTATTTGGATGTGCATTCCAG 59.622 43.478 17.68 10.71 34.72 3.86
2180 4407 3.128589 ACACGTATTTGGATGTGCATTCC 59.871 43.478 10.85 10.85 39.53 3.01
2181 4408 4.142708 TGACACGTATTTGGATGTGCATTC 60.143 41.667 0.00 0.00 39.53 2.67
2182 4409 3.755905 TGACACGTATTTGGATGTGCATT 59.244 39.130 0.00 0.00 39.53 3.56
2183 4410 3.126858 GTGACACGTATTTGGATGTGCAT 59.873 43.478 0.00 0.00 39.53 3.96
2216 4444 9.619727 CAATACTAAGTTAAACAATCACGATCG 57.380 33.333 14.88 14.88 0.00 3.69
2258 4486 5.500234 TGCATGAGCTAACAAAAGGAGTAT 58.500 37.500 0.00 0.00 42.74 2.12
2268 4496 0.256752 ATGGCCTGCATGAGCTAACA 59.743 50.000 3.32 0.00 42.74 2.41
2276 4504 2.239400 AGAATCATCATGGCCTGCATG 58.761 47.619 3.32 0.00 0.00 4.06
2284 4512 6.157904 CAGTCAGCTAGTAGAATCATCATGG 58.842 44.000 0.00 0.00 0.00 3.66
2297 4525 7.607991 ACTGCATAAAAATTACAGTCAGCTAGT 59.392 33.333 0.00 0.00 36.95 2.57
2298 4526 7.978982 ACTGCATAAAAATTACAGTCAGCTAG 58.021 34.615 0.00 0.00 36.95 3.42
2328 4556 4.873817 GCAGATGCATATGCCAATTAACA 58.126 39.130 31.28 3.84 38.98 2.41
2369 4597 6.071952 GGTTGTTAAGATTCATCAGGCAAAGA 60.072 38.462 0.00 0.00 0.00 2.52
2419 4647 7.234577 ACCAGAAAGGCAAAATTTCCAGTATTA 59.765 33.333 0.00 0.00 43.14 0.98
2460 4688 6.157904 TGTACACTGCATTGAATTTGAATGG 58.842 36.000 11.48 0.00 32.38 3.16
2474 4702 1.842052 TCCGACCTATGTACACTGCA 58.158 50.000 0.00 0.00 0.00 4.41
2478 4706 2.691526 TGGTGATCCGACCTATGTACAC 59.308 50.000 0.00 0.00 36.88 2.90
2495 4723 7.272244 TCCACATACACTATAAAGTCATGGTG 58.728 38.462 0.00 0.00 41.65 4.17
2497 4725 7.095060 GCATCCACATACACTATAAAGTCATGG 60.095 40.741 0.00 0.00 32.78 3.66
2508 4736 4.536765 TCTCAGAGCATCCACATACACTA 58.463 43.478 0.00 0.00 33.66 2.74
2607 4840 7.483580 AGGATTACTAGTAACTTGCAAGACT 57.516 36.000 32.50 25.79 0.00 3.24
2643 5135 4.729918 GCACCACTCCTGGGCCTG 62.730 72.222 4.53 3.68 42.74 4.85
2666 5158 6.472016 TCCAACTGAAGAATGTGCTATTACA 58.528 36.000 0.00 0.00 34.63 2.41
2709 5203 8.786826 TTTTCATACCAGTTATAACCTCACTG 57.213 34.615 12.05 3.43 38.14 3.66
2804 5306 9.542462 TGTATACAGGATTTTCAGTATTGCTAC 57.458 33.333 0.08 0.00 0.00 3.58
2806 5308 9.060347 CATGTATACAGGATTTTCAGTATTGCT 57.940 33.333 12.10 0.00 0.00 3.91
2808 5310 9.060347 AGCATGTATACAGGATTTTCAGTATTG 57.940 33.333 21.10 5.47 0.00 1.90
2812 5314 9.712305 GTATAGCATGTATACAGGATTTTCAGT 57.288 33.333 21.10 1.29 32.28 3.41
2813 5315 9.935241 AGTATAGCATGTATACAGGATTTTCAG 57.065 33.333 21.10 0.00 33.92 3.02
2870 5372 9.859427 CAAATAAAGCATAAGAAACAGGATGAA 57.141 29.630 0.00 0.00 39.69 2.57
2873 5375 8.806146 ACACAAATAAAGCATAAGAAACAGGAT 58.194 29.630 0.00 0.00 0.00 3.24
2909 5411 4.701171 AGACCAACAACGTTCAAAACCTAA 59.299 37.500 0.00 0.00 0.00 2.69
2937 5439 6.916360 AGAGAGGAGATCAAAGGATATGTC 57.084 41.667 0.00 0.00 32.67 3.06
2940 5442 8.677871 TCTCTTAGAGAGGAGATCAAAGGATAT 58.322 37.037 8.00 0.00 42.54 1.63
2941 5443 8.051468 TCTCTTAGAGAGGAGATCAAAGGATA 57.949 38.462 8.00 0.00 42.54 2.59
3091 5607 9.691362 AATTAAAATATAAGCACCTTTATGGCG 57.309 29.630 0.00 0.00 40.22 5.69
3129 5645 4.023450 TGTCTACCGATCTGCTTATAACCG 60.023 45.833 0.00 0.00 0.00 4.44
3134 5650 6.477253 TCTCTATGTCTACCGATCTGCTTAT 58.523 40.000 0.00 0.00 0.00 1.73
3136 5652 4.720046 TCTCTATGTCTACCGATCTGCTT 58.280 43.478 0.00 0.00 0.00 3.91
3141 5657 7.227910 GGATATCCTTCTCTATGTCTACCGATC 59.772 44.444 14.97 0.00 0.00 3.69
3169 5685 2.100197 GTCCAAATTCTAAGGCCCACC 58.900 52.381 0.00 0.00 0.00 4.61
3171 5687 3.075283 TCAAGTCCAAATTCTAAGGCCCA 59.925 43.478 0.00 0.00 0.00 5.36
3232 5748 5.574055 CACATGACAAACCAATATCAGCAAC 59.426 40.000 0.00 0.00 0.00 4.17
3349 5871 5.078411 ACACATGACTAGATGTCTCAACC 57.922 43.478 0.00 0.00 45.54 3.77
3353 5875 5.031578 GTCGAACACATGACTAGATGTCTC 58.968 45.833 0.00 0.00 45.54 3.36
3358 5880 5.392767 AGTTGTCGAACACATGACTAGAT 57.607 39.130 0.00 0.00 33.90 1.98
3391 5921 5.478679 TGTCCAACCCACCAATGTTTATAAG 59.521 40.000 0.00 0.00 0.00 1.73
3392 5922 5.394738 TGTCCAACCCACCAATGTTTATAA 58.605 37.500 0.00 0.00 0.00 0.98
3405 5938 1.894466 CAGCATCAAATGTCCAACCCA 59.106 47.619 0.00 0.00 0.00 4.51
3406 5939 1.895131 ACAGCATCAAATGTCCAACCC 59.105 47.619 0.00 0.00 0.00 4.11
3410 5943 3.640498 TGGAAAACAGCATCAAATGTCCA 59.360 39.130 0.00 0.00 0.00 4.02
3414 5947 8.461222 TCTAATAGTGGAAAACAGCATCAAATG 58.539 33.333 0.00 0.00 0.00 2.32
3487 6022 0.190815 ACCATTTTGGGCCTCAAGGT 59.809 50.000 4.53 6.62 43.37 3.50
3512 6047 7.011763 CACCAAATCATATCTGGTACAAGACAG 59.988 40.741 0.83 0.00 41.60 3.51
3595 6235 3.963428 AACTACACTCAGTCCATCACC 57.037 47.619 0.00 0.00 0.00 4.02
3608 6248 8.995220 TCTGTAACCAATGTAATCAAACTACAC 58.005 33.333 0.00 0.00 32.27 2.90
3609 6249 9.733556 ATCTGTAACCAATGTAATCAAACTACA 57.266 29.630 0.00 0.00 33.93 2.74
3674 6314 5.393461 CCCAATCTAACAATCAAGGTCTTGC 60.393 44.000 5.88 0.00 40.24 4.01
3751 6391 5.522460 GCCAAACTTTCCCTTTAACAGAAAC 59.478 40.000 0.00 0.00 0.00 2.78
3915 6558 7.715657 TCAAATCAAATGGTGGCATAGAATAC 58.284 34.615 0.00 0.00 0.00 1.89
3924 6567 4.525912 AGAGTTCAAATCAAATGGTGGC 57.474 40.909 0.00 0.00 0.00 5.01
3925 6568 5.393461 GGCTAGAGTTCAAATCAAATGGTGG 60.393 44.000 0.00 0.00 0.00 4.61
3926 6569 5.416952 AGGCTAGAGTTCAAATCAAATGGTG 59.583 40.000 0.00 0.00 0.00 4.17
3927 6570 5.574188 AGGCTAGAGTTCAAATCAAATGGT 58.426 37.500 0.00 0.00 0.00 3.55
3928 6571 6.521151 AAGGCTAGAGTTCAAATCAAATGG 57.479 37.500 0.00 0.00 0.00 3.16
3930 6573 7.890655 ACCTAAAGGCTAGAGTTCAAATCAAAT 59.109 33.333 0.00 0.00 39.32 2.32
3931 6574 7.174946 CACCTAAAGGCTAGAGTTCAAATCAAA 59.825 37.037 0.00 0.00 39.32 2.69
3932 6575 6.655003 CACCTAAAGGCTAGAGTTCAAATCAA 59.345 38.462 0.00 0.00 39.32 2.57
3933 6576 6.173339 CACCTAAAGGCTAGAGTTCAAATCA 58.827 40.000 0.00 0.00 39.32 2.57
3934 6577 6.092807 CACACCTAAAGGCTAGAGTTCAAATC 59.907 42.308 0.00 0.00 39.32 2.17
3957 6600 7.985634 ATGTGACAACAATAAAACAAGACAC 57.014 32.000 0.00 0.00 40.46 3.67
3966 6609 5.098893 GCGGCATAATGTGACAACAATAAA 58.901 37.500 0.00 0.00 40.46 1.40
3979 6622 2.493035 TGTGTAGATGGCGGCATAATG 58.507 47.619 25.86 0.00 0.00 1.90
3987 6630 6.154203 AGGATATATCATGTGTAGATGGCG 57.846 41.667 14.60 0.00 0.00 5.69
4000 6643 5.308014 AGCATGCACGAAAAGGATATATCA 58.692 37.500 21.98 0.00 0.00 2.15
4001 6644 5.641209 AGAGCATGCACGAAAAGGATATATC 59.359 40.000 21.98 3.96 0.00 1.63
4011 6655 2.097680 TCATCAGAGCATGCACGAAA 57.902 45.000 21.98 5.05 0.00 3.46
4014 6662 1.260825 GACATCATCAGAGCATGCACG 59.739 52.381 21.98 10.29 0.00 5.34
4015 6663 2.285977 TGACATCATCAGAGCATGCAC 58.714 47.619 21.98 14.59 31.91 4.57
4022 6670 6.703607 GGGTATTAGTGTTGACATCATCAGAG 59.296 42.308 0.00 0.00 38.99 3.35
4025 6673 6.560003 AGGGTATTAGTGTTGACATCATCA 57.440 37.500 0.00 0.00 34.65 3.07
4034 6682 5.242838 TCCAGCAAAAAGGGTATTAGTGTTG 59.757 40.000 0.00 0.00 0.00 3.33
4039 6687 6.434340 ACTCTTTCCAGCAAAAAGGGTATTAG 59.566 38.462 8.68 0.83 43.81 1.73
4085 6733 3.599343 AGTCTATCGCAAATGAACTGCA 58.401 40.909 0.00 0.00 39.91 4.41
4086 6734 5.043903 TCTAGTCTATCGCAAATGAACTGC 58.956 41.667 0.00 0.00 36.41 4.40
4089 6737 5.460419 CCACTCTAGTCTATCGCAAATGAAC 59.540 44.000 0.00 0.00 0.00 3.18
4091 6739 4.887655 TCCACTCTAGTCTATCGCAAATGA 59.112 41.667 0.00 0.00 0.00 2.57
4108 6756 2.284190 GAGCCAGCAAGTTATCCACTC 58.716 52.381 0.00 0.00 32.94 3.51
4129 6777 6.931281 AGTAACATTCCAGGTGATGATAATCG 59.069 38.462 11.17 0.00 0.00 3.34
4183 6831 1.251251 GCCCCTGCATCACATTATCC 58.749 55.000 0.00 0.00 37.47 2.59
4193 6841 4.772231 CAGCAAGGGCCCCTGCAT 62.772 66.667 40.14 25.28 42.56 3.96
4220 6868 5.288543 ACTAAGGTAAACACTAGTCGACG 57.711 43.478 10.46 0.00 0.00 5.12
4222 6870 9.236006 AGATAAACTAAGGTAAACACTAGTCGA 57.764 33.333 0.00 0.00 0.00 4.20
4249 6901 6.306987 ACTGGATTACTGGACAGATGTTTTT 58.693 36.000 6.29 0.00 35.08 1.94
4309 6961 9.613428 TCATAGGTATTCAATTTGAGTGTTAGG 57.387 33.333 4.79 0.00 0.00 2.69
4333 6985 8.934023 AAATGACTCCTTACCAAACTATTTCA 57.066 30.769 0.00 0.00 0.00 2.69
4334 6986 9.841880 GAAAATGACTCCTTACCAAACTATTTC 57.158 33.333 0.00 0.00 0.00 2.17
4349 7001 2.003301 GGTCGCAGAGAAAATGACTCC 58.997 52.381 0.00 0.00 36.95 3.85
4352 7004 2.688507 TCAGGTCGCAGAGAAAATGAC 58.311 47.619 0.00 0.00 36.95 3.06
4361 7013 0.610174 AAGCTCATTCAGGTCGCAGA 59.390 50.000 0.00 0.00 30.18 4.26
4366 7018 3.817647 ACAGACAAAAGCTCATTCAGGTC 59.182 43.478 0.00 0.00 30.18 3.85
4376 7028 3.205784 AGCTCAGAACAGACAAAAGCT 57.794 42.857 0.00 0.00 33.97 3.74
4558 7236 1.183549 TCTACCAAGAAGAGACGGGC 58.816 55.000 0.00 0.00 0.00 6.13
4577 7256 5.762825 ATTTCATCTTAAGCACGCATGAT 57.237 34.783 0.00 0.00 0.00 2.45
4722 7401 4.003788 CCGACAACCCGTGGAGCT 62.004 66.667 0.00 0.00 0.00 4.09
4728 7407 4.657824 CTGACGCCGACAACCCGT 62.658 66.667 0.00 0.00 37.99 5.28
4729 7408 4.657824 ACTGACGCCGACAACCCG 62.658 66.667 0.00 0.00 0.00 5.28
4730 7409 2.280592 AACTGACGCCGACAACCC 60.281 61.111 0.00 0.00 0.00 4.11
4731 7410 2.604174 CCAACTGACGCCGACAACC 61.604 63.158 0.00 0.00 0.00 3.77
4732 7411 0.598158 TACCAACTGACGCCGACAAC 60.598 55.000 0.00 0.00 0.00 3.32
4733 7412 0.104487 TTACCAACTGACGCCGACAA 59.896 50.000 0.00 0.00 0.00 3.18
4734 7413 0.319083 ATTACCAACTGACGCCGACA 59.681 50.000 0.00 0.00 0.00 4.35
4735 7414 0.719465 CATTACCAACTGACGCCGAC 59.281 55.000 0.00 0.00 0.00 4.79
4747 7426 8.682710 GGCAAGAAATCTGTATTAACATTACCA 58.317 33.333 0.00 0.00 34.37 3.25
4771 7450 0.233848 CAACGTACAACAGGTTCGGC 59.766 55.000 0.00 0.00 43.59 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.