Multiple sequence alignment - TraesCS2B01G452600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G452600 chr2B 100.000 3971 0 0 1 3971 646600552 646596582 0.000000e+00 7334.0
1 TraesCS2B01G452600 chr2B 81.587 1298 169 46 1577 2827 646660299 646659025 0.000000e+00 1009.0
2 TraesCS2B01G452600 chr2B 88.192 813 80 10 176 980 117935765 117934961 0.000000e+00 955.0
3 TraesCS2B01G452600 chr2B 95.315 555 23 3 3417 3970 691998472 691999024 0.000000e+00 878.0
4 TraesCS2B01G452600 chr2B 87.416 445 23 10 2831 3273 691998060 691998473 7.720000e-132 481.0
5 TraesCS2B01G452600 chr2B 85.201 473 39 18 2828 3273 731676708 731677176 1.300000e-124 457.0
6 TraesCS2B01G452600 chr2B 86.076 237 29 3 744 980 773425380 773425148 6.590000e-63 252.0
7 TraesCS2B01G452600 chr2B 83.650 263 35 7 721 980 646657084 646657341 1.430000e-59 241.0
8 TraesCS2B01G452600 chr2B 88.350 103 5 3 3332 3428 545760422 545760523 2.510000e-22 117.0
9 TraesCS2B01G452600 chr2D 92.612 1367 71 8 1482 2830 540955275 540953921 0.000000e+00 1938.0
10 TraesCS2B01G452600 chr2D 86.484 1021 69 35 3 980 585732058 585733052 0.000000e+00 1057.0
11 TraesCS2B01G452600 chr2D 81.025 1112 156 34 1577 2653 540966520 540965429 0.000000e+00 833.0
12 TraesCS2B01G452600 chr2D 86.752 468 42 9 981 1443 540955827 540955375 1.650000e-138 503.0
13 TraesCS2B01G452600 chr2D 86.224 196 20 3 2638 2827 540964144 540963950 5.200000e-49 206.0
14 TraesCS2B01G452600 chr2A 91.899 1185 65 10 1487 2641 684435794 684434611 0.000000e+00 1628.0
15 TraesCS2B01G452600 chr2A 89.215 853 68 9 1973 2801 684406805 684405953 0.000000e+00 1044.0
16 TraesCS2B01G452600 chr2A 81.622 1295 173 32 1577 2828 684443446 684442174 0.000000e+00 1013.0
17 TraesCS2B01G452600 chr2A 91.065 526 44 3 3447 3970 654630594 654630070 0.000000e+00 708.0
18 TraesCS2B01G452600 chr2A 89.140 442 37 9 2832 3272 654631062 654630631 1.260000e-149 540.0
19 TraesCS2B01G452600 chr2A 95.074 203 10 0 2599 2801 684429103 684428901 1.780000e-83 320.0
20 TraesCS2B01G452600 chr2A 89.241 158 8 5 1347 1496 684440126 684439970 5.240000e-44 189.0
21 TraesCS2B01G452600 chr1D 87.769 1022 74 29 1 982 422073819 422072809 0.000000e+00 1147.0
22 TraesCS2B01G452600 chr1D 87.571 531 57 6 3447 3970 474084476 474083948 1.220000e-169 606.0
23 TraesCS2B01G452600 chr1D 83.922 255 37 3 726 980 422269236 422269486 1.430000e-59 241.0
24 TraesCS2B01G452600 chr1D 85.135 74 10 1 2828 2901 490366045 490366117 1.530000e-09 75.0
25 TraesCS2B01G452600 chr1D 82.667 75 12 1 2833 2907 416266304 416266231 9.210000e-07 65.8
26 TraesCS2B01G452600 chr4D 88.578 858 58 18 141 980 43362718 43361883 0.000000e+00 1005.0
27 TraesCS2B01G452600 chr4D 87.243 243 17 9 1 234 346266970 346267207 8.460000e-67 265.0
28 TraesCS2B01G452600 chr4D 87.137 241 17 9 3 234 346231509 346231744 1.090000e-65 261.0
29 TraesCS2B01G452600 chr4D 94.771 153 6 2 1 151 43370766 43370614 1.840000e-58 237.0
30 TraesCS2B01G452600 chr4D 83.398 259 35 8 724 980 346207426 346207174 2.390000e-57 233.0
31 TraesCS2B01G452600 chr4D 91.358 162 12 2 1 160 46606970 46606809 1.860000e-53 220.0
32 TraesCS2B01G452600 chr4D 94.872 39 1 1 2833 2871 122282326 122282363 4.290000e-05 60.2
33 TraesCS2B01G452600 chr5B 85.551 962 100 16 35 977 692428051 692427110 0.000000e+00 970.0
34 TraesCS2B01G452600 chr5B 92.473 93 5 2 3332 3422 458618949 458618857 8.950000e-27 132.0
35 TraesCS2B01G452600 chr5B 82.317 164 17 8 3269 3426 532357533 532357376 8.950000e-27 132.0
36 TraesCS2B01G452600 chr5B 93.182 88 5 1 3332 3418 458618896 458618983 1.160000e-25 128.0
37 TraesCS2B01G452600 chr5B 92.135 89 4 2 3332 3419 163905109 163905023 5.390000e-24 122.0
38 TraesCS2B01G452600 chr6B 84.568 972 100 25 31 980 564055517 564056460 0.000000e+00 918.0
39 TraesCS2B01G452600 chr6A 84.259 972 101 30 39 980 508299130 508298181 0.000000e+00 900.0
40 TraesCS2B01G452600 chrUn 95.315 555 22 4 3417 3970 22222652 22223203 0.000000e+00 878.0
41 TraesCS2B01G452600 chrUn 95.360 431 17 3 3536 3965 476391114 476390686 0.000000e+00 682.0
42 TraesCS2B01G452600 chrUn 87.865 445 21 10 2831 3273 22222240 22222653 3.570000e-135 492.0
43 TraesCS2B01G452600 chrUn 91.667 48 2 2 2824 2871 96371201 96371156 9.210000e-07 65.8
44 TraesCS2B01G452600 chr3B 94.955 555 26 2 3417 3970 581097496 581098049 0.000000e+00 869.0
45 TraesCS2B01G452600 chr3B 91.964 448 25 7 2828 3273 581097059 581097497 5.640000e-173 617.0
46 TraesCS2B01G452600 chr3B 83.632 446 61 10 2832 3273 729728728 729729165 3.690000e-110 409.0
47 TraesCS2B01G452600 chr3B 89.950 199 14 5 3 199 635271242 635271048 6.590000e-63 252.0
48 TraesCS2B01G452600 chr3B 92.958 71 5 0 3262 3332 665456233 665456303 1.950000e-18 104.0
49 TraesCS2B01G452600 chr3B 88.889 54 2 3 3446 3499 18763575 18763526 3.310000e-06 63.9
50 TraesCS2B01G452600 chr1B 83.402 964 121 18 35 980 148153689 148152747 0.000000e+00 857.0
51 TraesCS2B01G452600 chr1B 83.333 156 17 5 3269 3418 510803473 510803625 6.920000e-28 135.0
52 TraesCS2B01G452600 chr1B 92.857 70 4 1 3262 3330 564897053 564896984 2.530000e-17 100.0
53 TraesCS2B01G452600 chr5D 85.397 856 74 25 147 979 369015905 369016732 0.000000e+00 841.0
54 TraesCS2B01G452600 chr5D 93.827 162 8 2 1 160 369015710 369015871 3.960000e-60 243.0
55 TraesCS2B01G452600 chr5D 84.615 78 11 1 2830 2907 483793389 483793313 4.260000e-10 76.8
56 TraesCS2B01G452600 chr3A 91.255 526 42 4 3447 3970 709441854 709442377 0.000000e+00 713.0
57 TraesCS2B01G452600 chr3A 87.865 445 36 11 2831 3272 709441388 709441817 1.270000e-139 507.0
58 TraesCS2B01G452600 chr7A 91.115 529 41 4 3447 3970 685104326 685104853 0.000000e+00 712.0
59 TraesCS2B01G452600 chr7A 90.684 526 46 3 3447 3970 383419478 383420002 0.000000e+00 697.0
60 TraesCS2B01G452600 chr7A 89.462 446 37 8 2828 3272 383419005 383419441 4.480000e-154 555.0
61 TraesCS2B01G452600 chr7A 88.713 443 37 11 2832 3272 685103858 685104289 2.720000e-146 529.0
62 TraesCS2B01G452600 chr7A 77.679 224 32 12 2832 3042 730152400 730152182 1.940000e-23 121.0
63 TraesCS2B01G452600 chr4B 83.079 786 93 22 220 980 611646912 611647682 0.000000e+00 678.0
64 TraesCS2B01G452600 chr4B 82.667 150 14 6 3278 3419 399147779 399147634 5.390000e-24 122.0
65 TraesCS2B01G452600 chr1A 81.779 461 64 16 2832 3273 574573776 574574235 6.270000e-98 368.0
66 TraesCS2B01G452600 chr1A 79.518 332 42 23 2832 3145 556223974 556223651 3.110000e-51 213.0
67 TraesCS2B01G452600 chr1A 90.909 88 6 2 3332 3418 365069573 365069487 2.510000e-22 117.0
68 TraesCS2B01G452600 chr1A 81.935 155 6 8 3266 3419 3261724 3261591 1.170000e-20 111.0
69 TraesCS2B01G452600 chr1A 82.051 156 5 9 3265 3418 481651109 481650975 1.170000e-20 111.0
70 TraesCS2B01G452600 chr7D 82.890 263 38 5 721 980 192450254 192449996 3.090000e-56 230.0
71 TraesCS2B01G452600 chr7D 95.522 67 3 0 3266 3332 150347197 150347131 1.510000e-19 108.0
72 TraesCS2B01G452600 chr4A 81.000 300 36 14 2833 3113 548878054 548877757 6.680000e-53 219.0
73 TraesCS2B01G452600 chr4A 89.000 100 5 2 3332 3425 730340978 730340879 6.970000e-23 119.0
74 TraesCS2B01G452600 chr7B 85.211 142 19 2 2831 2972 674226063 674225924 1.150000e-30 145.0
75 TraesCS2B01G452600 chr7B 91.209 91 2 2 3337 3421 133487057 133486967 6.970000e-23 119.0
76 TraesCS2B01G452600 chr7B 88.372 86 8 2 3272 3355 632804314 632804399 7.020000e-18 102.0
77 TraesCS2B01G452600 chr7B 81.159 138 14 7 3272 3401 413601023 413601156 2.530000e-17 100.0
78 TraesCS2B01G452600 chr3D 86.598 97 11 2 2819 2915 570039023 570039117 5.430000e-19 106.0
79 TraesCS2B01G452600 chr5A 86.047 86 11 1 2832 2917 14373931 14374015 1.520000e-14 91.6
80 TraesCS2B01G452600 chr5A 86.076 79 10 1 3274 3351 435883562 435883484 2.540000e-12 84.2
81 TraesCS2B01G452600 chr6D 84.211 76 11 1 2832 2907 453078679 453078605 5.500000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G452600 chr2B 646596582 646600552 3970 True 7334.0 7334 100.0000 1 3971 1 chr2B.!!$R2 3970
1 TraesCS2B01G452600 chr2B 646659025 646660299 1274 True 1009.0 1009 81.5870 1577 2827 1 chr2B.!!$R3 1250
2 TraesCS2B01G452600 chr2B 117934961 117935765 804 True 955.0 955 88.1920 176 980 1 chr2B.!!$R1 804
3 TraesCS2B01G452600 chr2B 691998060 691999024 964 False 679.5 878 91.3655 2831 3970 2 chr2B.!!$F4 1139
4 TraesCS2B01G452600 chr2D 540953921 540955827 1906 True 1220.5 1938 89.6820 981 2830 2 chr2D.!!$R1 1849
5 TraesCS2B01G452600 chr2D 585732058 585733052 994 False 1057.0 1057 86.4840 3 980 1 chr2D.!!$F1 977
6 TraesCS2B01G452600 chr2D 540963950 540966520 2570 True 519.5 833 83.6245 1577 2827 2 chr2D.!!$R2 1250
7 TraesCS2B01G452600 chr2A 684434611 684435794 1183 True 1628.0 1628 91.8990 1487 2641 1 chr2A.!!$R3 1154
8 TraesCS2B01G452600 chr2A 684405953 684406805 852 True 1044.0 1044 89.2150 1973 2801 1 chr2A.!!$R1 828
9 TraesCS2B01G452600 chr2A 654630070 654631062 992 True 624.0 708 90.1025 2832 3970 2 chr2A.!!$R4 1138
10 TraesCS2B01G452600 chr2A 684439970 684443446 3476 True 601.0 1013 85.4315 1347 2828 2 chr2A.!!$R5 1481
11 TraesCS2B01G452600 chr1D 422072809 422073819 1010 True 1147.0 1147 87.7690 1 982 1 chr1D.!!$R2 981
12 TraesCS2B01G452600 chr1D 474083948 474084476 528 True 606.0 606 87.5710 3447 3970 1 chr1D.!!$R3 523
13 TraesCS2B01G452600 chr4D 43361883 43362718 835 True 1005.0 1005 88.5780 141 980 1 chr4D.!!$R1 839
14 TraesCS2B01G452600 chr5B 692427110 692428051 941 True 970.0 970 85.5510 35 977 1 chr5B.!!$R4 942
15 TraesCS2B01G452600 chr6B 564055517 564056460 943 False 918.0 918 84.5680 31 980 1 chr6B.!!$F1 949
16 TraesCS2B01G452600 chr6A 508298181 508299130 949 True 900.0 900 84.2590 39 980 1 chr6A.!!$R1 941
17 TraesCS2B01G452600 chrUn 22222240 22223203 963 False 685.0 878 91.5900 2831 3970 2 chrUn.!!$F1 1139
18 TraesCS2B01G452600 chr3B 581097059 581098049 990 False 743.0 869 93.4595 2828 3970 2 chr3B.!!$F3 1142
19 TraesCS2B01G452600 chr1B 148152747 148153689 942 True 857.0 857 83.4020 35 980 1 chr1B.!!$R1 945
20 TraesCS2B01G452600 chr5D 369015710 369016732 1022 False 542.0 841 89.6120 1 979 2 chr5D.!!$F1 978
21 TraesCS2B01G452600 chr3A 709441388 709442377 989 False 610.0 713 89.5600 2831 3970 2 chr3A.!!$F1 1139
22 TraesCS2B01G452600 chr7A 383419005 383420002 997 False 626.0 697 90.0730 2828 3970 2 chr7A.!!$F1 1142
23 TraesCS2B01G452600 chr7A 685103858 685104853 995 False 620.5 712 89.9140 2832 3970 2 chr7A.!!$F2 1138
24 TraesCS2B01G452600 chr4B 611646912 611647682 770 False 678.0 678 83.0790 220 980 1 chr4B.!!$F1 760

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
807 914 0.036388 CGGTGGCACCTAGTTCATGT 60.036 55.0 32.28 0.00 35.66 3.21 F
2578 2874 0.036388 GCTGTTCCTCGGGATGAACA 60.036 55.0 15.51 15.51 46.23 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2802 4409 0.107508 ACAGATTGGGCGTGATCCAG 60.108 55.000 0.00 0.0 35.48 3.86 R
3652 6018 1.377333 GGACCTTACAGGCCACAGC 60.377 63.158 5.01 0.0 39.63 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
129 131 6.267817 CCATATGTATGGCACTTTCAGTTTG 58.732 40.000 6.14 0.00 45.92 2.93
168 188 6.147821 ACACACATCTCTGCACAACTTAATAC 59.852 38.462 0.00 0.00 0.00 1.89
171 191 5.877012 ACATCTCTGCACAACTTAATACCTG 59.123 40.000 0.00 0.00 0.00 4.00
172 192 4.253685 TCTCTGCACAACTTAATACCTGC 58.746 43.478 0.00 0.00 0.00 4.85
173 193 4.020218 TCTCTGCACAACTTAATACCTGCT 60.020 41.667 0.00 0.00 0.00 4.24
174 194 4.002982 TCTGCACAACTTAATACCTGCTG 58.997 43.478 0.00 0.00 0.00 4.41
176 196 2.487762 GCACAACTTAATACCTGCTGCA 59.512 45.455 0.88 0.88 0.00 4.41
177 197 3.670627 GCACAACTTAATACCTGCTGCAC 60.671 47.826 0.00 0.00 0.00 4.57
190 240 1.580845 GCTGCACCACACATCTCCAC 61.581 60.000 0.00 0.00 0.00 4.02
206 256 2.559668 CTCCACCAGCAAAACACATCAT 59.440 45.455 0.00 0.00 0.00 2.45
409 459 1.457455 CCACACTGCCAGGGGTTTT 60.457 57.895 0.00 0.00 0.00 2.43
585 660 3.135530 GGATGGCATCCTCAAGTTCTACT 59.864 47.826 34.15 0.00 46.19 2.57
642 726 3.791586 GCACCAGGGAGAGGGAGC 61.792 72.222 0.00 0.00 33.74 4.70
668 758 1.299014 GATGAGTGAGCGAGCGAGG 60.299 63.158 0.00 0.00 0.00 4.63
669 759 3.423162 ATGAGTGAGCGAGCGAGGC 62.423 63.158 0.00 0.00 0.00 4.70
697 800 2.709883 GGCTGAGCTCGCTCTCACT 61.710 63.158 23.23 0.00 43.12 3.41
698 801 1.380403 GGCTGAGCTCGCTCTCACTA 61.380 60.000 23.23 0.00 43.12 2.74
729 832 2.593468 ATTGGACCATCGACAGCCGG 62.593 60.000 0.00 0.00 39.14 6.13
807 914 0.036388 CGGTGGCACCTAGTTCATGT 60.036 55.000 32.28 0.00 35.66 3.21
891 999 3.926821 TTTGCCACGGATTAGGAAAAC 57.073 42.857 0.00 0.00 27.27 2.43
893 1001 2.432444 TGCCACGGATTAGGAAAACAG 58.568 47.619 0.00 0.00 0.00 3.16
897 1006 3.408634 CACGGATTAGGAAAACAGTGGT 58.591 45.455 0.00 0.00 32.52 4.16
898 1007 4.563993 CCACGGATTAGGAAAACAGTGGTA 60.564 45.833 0.00 0.00 43.75 3.25
899 1008 4.630069 CACGGATTAGGAAAACAGTGGTAG 59.370 45.833 0.00 0.00 32.52 3.18
900 1009 3.621715 CGGATTAGGAAAACAGTGGTAGC 59.378 47.826 0.00 0.00 0.00 3.58
1002 1113 9.701098 ACTCAAAACGTTAAGTAGAACATGATA 57.299 29.630 0.00 0.00 0.00 2.15
1004 1115 9.478768 TCAAAACGTTAAGTAGAACATGATACA 57.521 29.630 0.00 0.00 0.00 2.29
1018 1129 8.959548 AGAACATGATACAAAAATGCACTCATA 58.040 29.630 0.00 0.00 31.46 2.15
1020 1131 9.577110 AACATGATACAAAAATGCACTCATAAG 57.423 29.630 0.00 0.00 31.46 1.73
1022 1133 9.961265 CATGATACAAAAATGCACTCATAAGAT 57.039 29.630 0.00 0.00 31.46 2.40
1040 1151 9.534565 TCATAAGATATTATTCTATTGCTCCGC 57.465 33.333 0.00 0.00 0.00 5.54
1063 1174 1.227118 GGCGCTGAACTCTAGAGGC 60.227 63.158 23.50 15.33 33.89 4.70
1076 1187 0.394938 TAGAGGCGGCAACTTTGACA 59.605 50.000 13.08 0.00 35.35 3.58
1083 1194 1.398451 CGGCAACTTTGACACGTCATC 60.398 52.381 0.00 0.00 39.64 2.92
1092 1203 1.135228 TGACACGTCATCGGTATGTGG 60.135 52.381 0.00 0.00 41.85 4.17
1110 1221 1.627297 GGGTGGTGGAGAGGATGGAC 61.627 65.000 0.00 0.00 0.00 4.02
1113 1224 0.970937 TGGTGGAGAGGATGGACGAC 60.971 60.000 0.00 0.00 0.00 4.34
1116 1227 0.395862 TGGAGAGGATGGACGACTCC 60.396 60.000 0.00 0.00 44.90 3.85
1120 1231 0.902531 GAGGATGGACGACTCCCAAA 59.097 55.000 0.00 0.00 37.22 3.28
1126 1237 2.531771 TGGACGACTCCCAAAGATGTA 58.468 47.619 0.00 0.00 35.34 2.29
1129 1240 4.019681 TGGACGACTCCCAAAGATGTAATT 60.020 41.667 0.00 0.00 35.34 1.40
1162 1273 6.464895 TTTTGCTTCAGTTGTTTTCTTGTG 57.535 33.333 0.00 0.00 0.00 3.33
1164 1275 5.581126 TGCTTCAGTTGTTTTCTTGTGAT 57.419 34.783 0.00 0.00 0.00 3.06
1169 1280 5.649557 TCAGTTGTTTTCTTGTGATTGTGG 58.350 37.500 0.00 0.00 0.00 4.17
1170 1281 4.268405 CAGTTGTTTTCTTGTGATTGTGGC 59.732 41.667 0.00 0.00 0.00 5.01
1183 1294 5.092781 GTGATTGTGGCGTTCGATTAATTT 58.907 37.500 0.00 0.00 0.00 1.82
1198 1311 7.103641 TCGATTAATTTGTAGAGTCTTGGCTT 58.896 34.615 0.00 0.00 0.00 4.35
1203 1316 6.910536 ATTTGTAGAGTCTTGGCTTATTCG 57.089 37.500 0.00 0.00 0.00 3.34
1207 1320 4.762289 AGAGTCTTGGCTTATTCGGAAT 57.238 40.909 8.49 8.49 0.00 3.01
1212 1325 5.297029 AGTCTTGGCTTATTCGGAATAAAGC 59.703 40.000 20.30 21.69 33.26 3.51
1215 1328 4.523083 TGGCTTATTCGGAATAAAGCTGT 58.477 39.130 25.93 0.00 33.26 4.40
1216 1329 4.335315 TGGCTTATTCGGAATAAAGCTGTG 59.665 41.667 25.93 16.16 33.26 3.66
1223 1336 4.439057 TCGGAATAAAGCTGTGATGTACC 58.561 43.478 0.00 0.00 0.00 3.34
1250 1363 5.981088 AAACACATTTGCACATCATAGGA 57.019 34.783 0.00 0.00 0.00 2.94
1262 1375 2.624316 TCATAGGACACACGTCGAAC 57.376 50.000 0.00 0.00 43.61 3.95
1264 1377 2.490509 TCATAGGACACACGTCGAACAT 59.509 45.455 0.00 0.00 43.61 2.71
1269 1382 5.063180 AGGACACACGTCGAACATATTTA 57.937 39.130 0.00 0.00 43.61 1.40
1279 1392 6.583806 ACGTCGAACATATTTAACGTCTCTTT 59.416 34.615 0.00 0.00 35.55 2.52
1280 1393 6.887763 CGTCGAACATATTTAACGTCTCTTTG 59.112 38.462 0.00 0.00 0.00 2.77
1281 1394 7.201291 CGTCGAACATATTTAACGTCTCTTTGA 60.201 37.037 0.00 0.00 0.00 2.69
1282 1395 8.592998 GTCGAACATATTTAACGTCTCTTTGAT 58.407 33.333 0.00 0.00 0.00 2.57
1283 1396 9.146984 TCGAACATATTTAACGTCTCTTTGATT 57.853 29.630 0.00 0.00 0.00 2.57
1284 1397 9.199184 CGAACATATTTAACGTCTCTTTGATTG 57.801 33.333 0.00 0.00 0.00 2.67
1289 1402 7.611213 ATTTAACGTCTCTTTGATTGGTAGG 57.389 36.000 0.00 0.00 0.00 3.18
1302 1415 7.408756 TTGATTGGTAGGATTCTCAAAATGG 57.591 36.000 0.00 0.00 0.00 3.16
1333 1449 6.869913 AGAAAACACATAATTGAAGTGGCATG 59.130 34.615 10.25 0.00 37.58 4.06
1352 1468 3.565764 TGCCCTCTCAAATCCTACATG 57.434 47.619 0.00 0.00 0.00 3.21
1358 1474 6.772716 GCCCTCTCAAATCCTACATGATTTTA 59.227 38.462 0.00 0.00 41.74 1.52
1389 1505 6.601613 TGGGATTTATTAGATCAAAAGCGTGT 59.398 34.615 0.00 0.00 0.00 4.49
1456 1572 4.432601 CCCCCTTCCAATTCGCAA 57.567 55.556 0.00 0.00 0.00 4.85
1457 1573 1.890174 CCCCCTTCCAATTCGCAAC 59.110 57.895 0.00 0.00 0.00 4.17
1458 1574 1.506262 CCCCTTCCAATTCGCAACG 59.494 57.895 0.00 0.00 0.00 4.10
1459 1575 0.958382 CCCCTTCCAATTCGCAACGA 60.958 55.000 0.00 0.00 0.00 3.85
1504 1704 7.673926 ACATAGATATGTTTCTTTGGGTGGTTT 59.326 33.333 0.00 0.00 43.99 3.27
1514 1714 1.025812 TGGGTGGTTTGTTAGTTGCG 58.974 50.000 0.00 0.00 0.00 4.85
1733 1936 1.611419 CATGGCTCATGTCCTGGGT 59.389 57.895 6.93 0.00 37.12 4.51
1996 2208 2.362120 AGTACGACGACCAGGGGG 60.362 66.667 0.00 0.00 41.29 5.40
2034 2246 4.262635 CGTCTCAAATCCCTATACCAGCAT 60.263 45.833 0.00 0.00 0.00 3.79
2043 2255 3.110705 CCTATACCAGCATAGCCCAGAT 58.889 50.000 0.00 0.00 0.00 2.90
2054 2269 0.458669 AGCCCAGATGTTACGTACGG 59.541 55.000 21.06 1.43 0.00 4.02
2234 2461 0.181350 CACTACTGGGGCCAAGATCC 59.819 60.000 16.85 0.00 0.00 3.36
2354 2599 2.125106 ATCGAAGAAGGCGGTGGC 60.125 61.111 0.00 0.00 43.58 5.01
2578 2874 0.036388 GCTGTTCCTCGGGATGAACA 60.036 55.000 15.51 15.51 46.23 3.18
2604 2906 1.291272 GTGTTTACCGGCGAGGAGT 59.709 57.895 9.30 0.00 45.00 3.85
2802 4409 2.579738 GACTGCCCTTCGGAGGTC 59.420 66.667 9.48 0.00 41.85 3.85
2872 4518 1.595093 GGCCATTGGGTTTCACTCCG 61.595 60.000 4.53 0.00 36.17 4.63
2880 4526 1.226746 GGTTTCACTCCGTGACTTGG 58.773 55.000 0.00 0.00 42.60 3.61
2922 4712 3.811722 TGTGACGTGCAAAATCTGATC 57.188 42.857 0.00 0.00 0.00 2.92
3038 5359 8.889717 AGACACACCGGTCAATAAAATTATAAG 58.110 33.333 2.59 0.00 40.29 1.73
3042 5363 9.063615 ACACCGGTCAATAAAATTATAAGATCC 57.936 33.333 2.59 0.00 0.00 3.36
3123 5445 8.083828 AGCTTCTATCTTCCTAGAACATTGAA 57.916 34.615 0.00 0.00 34.74 2.69
3228 5579 3.107601 TCCCCTTCTGATCTTTCATCGT 58.892 45.455 0.00 0.00 0.00 3.73
3260 5611 8.709386 AAGATTAAACACTGCATCACTAGTAG 57.291 34.615 0.00 0.00 0.00 2.57
3273 5624 8.195436 TGCATCACTAGTAGTGGTAGAAAATAC 58.805 37.037 26.30 9.13 45.94 1.89
3274 5625 8.414778 GCATCACTAGTAGTGGTAGAAAATACT 58.585 37.037 26.30 0.00 45.94 2.12
3275 5626 9.953697 CATCACTAGTAGTGGTAGAAAATACTC 57.046 37.037 26.30 0.00 45.94 2.59
3276 5627 9.924010 ATCACTAGTAGTGGTAGAAAATACTCT 57.076 33.333 26.30 0.00 45.94 3.24
3277 5628 9.393512 TCACTAGTAGTGGTAGAAAATACTCTC 57.606 37.037 26.30 0.00 45.94 3.20
3278 5629 9.398538 CACTAGTAGTGGTAGAAAATACTCTCT 57.601 37.037 20.73 0.00 42.35 3.10
3279 5630 9.617523 ACTAGTAGTGGTAGAAAATACTCTCTC 57.382 37.037 0.85 0.00 0.00 3.20
3280 5631 7.885009 AGTAGTGGTAGAAAATACTCTCTCC 57.115 40.000 0.00 0.00 0.00 3.71
3281 5632 5.838531 AGTGGTAGAAAATACTCTCTCCG 57.161 43.478 0.00 0.00 0.00 4.63
3282 5633 5.262804 AGTGGTAGAAAATACTCTCTCCGT 58.737 41.667 0.00 0.00 0.00 4.69
3283 5634 5.357596 AGTGGTAGAAAATACTCTCTCCGTC 59.642 44.000 0.00 0.00 0.00 4.79
3284 5635 4.643784 TGGTAGAAAATACTCTCTCCGTCC 59.356 45.833 0.00 0.00 0.00 4.79
3285 5636 4.261114 GGTAGAAAATACTCTCTCCGTCCG 60.261 50.000 0.00 0.00 0.00 4.79
3286 5637 2.688958 AGAAAATACTCTCTCCGTCCGG 59.311 50.000 0.00 0.00 0.00 5.14
3287 5638 2.431954 AAATACTCTCTCCGTCCGGA 57.568 50.000 0.00 0.00 42.90 5.14
3288 5639 2.431954 AATACTCTCTCCGTCCGGAA 57.568 50.000 5.23 0.00 44.66 4.30
3289 5640 2.431954 ATACTCTCTCCGTCCGGAAA 57.568 50.000 5.23 0.00 44.66 3.13
3290 5641 2.431954 TACTCTCTCCGTCCGGAAAT 57.568 50.000 5.23 0.00 44.66 2.17
3291 5642 2.431954 ACTCTCTCCGTCCGGAAATA 57.568 50.000 5.23 0.00 44.66 1.40
3292 5643 2.022934 ACTCTCTCCGTCCGGAAATAC 58.977 52.381 5.23 0.00 44.66 1.89
3293 5644 2.299521 CTCTCTCCGTCCGGAAATACT 58.700 52.381 5.23 0.00 44.66 2.12
3294 5645 2.688958 CTCTCTCCGTCCGGAAATACTT 59.311 50.000 5.23 0.00 44.66 2.24
3295 5646 2.426024 TCTCTCCGTCCGGAAATACTTG 59.574 50.000 5.23 0.00 44.66 3.16
3296 5647 2.165845 CTCTCCGTCCGGAAATACTTGT 59.834 50.000 5.23 0.00 44.66 3.16
3297 5648 2.165030 TCTCCGTCCGGAAATACTTGTC 59.835 50.000 5.23 0.00 44.66 3.18
3298 5649 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
3299 5650 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
3300 5651 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
3301 5652 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
3302 5653 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
3303 5654 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
3304 5655 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
3305 5656 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
3306 5657 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
3307 5658 6.035843 CCGGAAATACTTGTCATCAAAATGG 58.964 40.000 0.00 0.00 33.42 3.16
3308 5659 6.127758 CCGGAAATACTTGTCATCAAAATGGA 60.128 38.462 0.00 0.00 33.42 3.41
3309 5660 7.416664 CCGGAAATACTTGTCATCAAAATGGAT 60.417 37.037 0.00 0.00 33.42 3.41
3310 5661 8.620416 CGGAAATACTTGTCATCAAAATGGATA 58.380 33.333 0.00 0.00 33.42 2.59
3316 5667 7.614494 ACTTGTCATCAAAATGGATAAAAGGG 58.386 34.615 0.00 0.00 33.42 3.95
3317 5668 6.543430 TGTCATCAAAATGGATAAAAGGGG 57.457 37.500 0.00 0.00 33.42 4.79
3318 5669 6.259893 TGTCATCAAAATGGATAAAAGGGGA 58.740 36.000 0.00 0.00 33.42 4.81
3319 5670 6.902416 TGTCATCAAAATGGATAAAAGGGGAT 59.098 34.615 0.00 0.00 33.42 3.85
3320 5671 7.147689 TGTCATCAAAATGGATAAAAGGGGATG 60.148 37.037 0.00 0.00 33.42 3.51
3321 5672 6.902416 TCATCAAAATGGATAAAAGGGGATGT 59.098 34.615 0.00 0.00 33.42 3.06
3322 5673 8.064389 TCATCAAAATGGATAAAAGGGGATGTA 58.936 33.333 0.00 0.00 33.42 2.29
3323 5674 7.654022 TCAAAATGGATAAAAGGGGATGTAC 57.346 36.000 0.00 0.00 0.00 2.90
3324 5675 6.609616 TCAAAATGGATAAAAGGGGATGTACC 59.390 38.462 0.00 0.00 38.08 3.34
3325 5676 6.355588 AAATGGATAAAAGGGGATGTACCT 57.644 37.500 0.00 0.00 40.96 3.08
3326 5677 7.474474 AAATGGATAAAAGGGGATGTACCTA 57.526 36.000 0.00 0.00 37.35 3.08
3327 5678 6.704056 ATGGATAAAAGGGGATGTACCTAG 57.296 41.667 0.00 0.00 37.35 3.02
3328 5679 5.795079 TGGATAAAAGGGGATGTACCTAGA 58.205 41.667 0.00 0.00 37.35 2.43
3329 5680 5.605488 TGGATAAAAGGGGATGTACCTAGAC 59.395 44.000 0.00 0.00 37.35 2.59
3330 5681 5.279356 GGATAAAAGGGGATGTACCTAGACG 60.279 48.000 0.00 0.00 37.35 4.18
3331 5682 2.842645 AAGGGGATGTACCTAGACGT 57.157 50.000 0.00 0.00 37.35 4.34
3332 5683 2.068834 AGGGGATGTACCTAGACGTG 57.931 55.000 0.00 0.00 36.32 4.49
3333 5684 1.038280 GGGGATGTACCTAGACGTGG 58.962 60.000 0.00 0.00 38.98 4.94
3334 5685 1.410648 GGGGATGTACCTAGACGTGGA 60.411 57.143 0.00 0.00 38.98 4.02
3335 5686 2.595238 GGGATGTACCTAGACGTGGAT 58.405 52.381 0.00 0.00 38.98 3.41
3336 5687 3.499202 GGGGATGTACCTAGACGTGGATA 60.499 52.174 0.00 0.00 38.98 2.59
3337 5688 4.147321 GGGATGTACCTAGACGTGGATAA 58.853 47.826 0.00 0.00 38.98 1.75
3338 5689 4.586001 GGGATGTACCTAGACGTGGATAAA 59.414 45.833 0.00 0.00 38.98 1.40
3339 5690 5.069516 GGGATGTACCTAGACGTGGATAAAA 59.930 44.000 0.00 0.00 38.98 1.52
3340 5691 6.214399 GGATGTACCTAGACGTGGATAAAAG 58.786 44.000 0.00 0.00 35.41 2.27
3341 5692 5.587388 TGTACCTAGACGTGGATAAAAGG 57.413 43.478 0.00 0.00 0.00 3.11
3342 5693 4.403432 TGTACCTAGACGTGGATAAAAGGG 59.597 45.833 0.00 0.00 0.00 3.95
3343 5694 2.770232 ACCTAGACGTGGATAAAAGGGG 59.230 50.000 0.00 0.00 0.00 4.79
3344 5695 3.036091 CCTAGACGTGGATAAAAGGGGA 58.964 50.000 0.00 0.00 0.00 4.81
3345 5696 3.646637 CCTAGACGTGGATAAAAGGGGAT 59.353 47.826 0.00 0.00 0.00 3.85
3346 5697 3.560636 AGACGTGGATAAAAGGGGATG 57.439 47.619 0.00 0.00 0.00 3.51
3347 5698 2.844348 AGACGTGGATAAAAGGGGATGT 59.156 45.455 0.00 0.00 0.00 3.06
3348 5699 4.035112 AGACGTGGATAAAAGGGGATGTA 58.965 43.478 0.00 0.00 0.00 2.29
3349 5700 4.658901 AGACGTGGATAAAAGGGGATGTAT 59.341 41.667 0.00 0.00 0.00 2.29
3350 5701 4.969484 ACGTGGATAAAAGGGGATGTATC 58.031 43.478 0.00 0.00 0.00 2.24
3351 5702 4.658901 ACGTGGATAAAAGGGGATGTATCT 59.341 41.667 0.00 0.00 0.00 1.98
3352 5703 5.842328 ACGTGGATAAAAGGGGATGTATCTA 59.158 40.000 0.00 0.00 0.00 1.98
3353 5704 6.014499 ACGTGGATAAAAGGGGATGTATCTAG 60.014 42.308 0.00 0.00 0.00 2.43
3354 5705 6.210784 CGTGGATAAAAGGGGATGTATCTAGA 59.789 42.308 0.00 0.00 0.00 2.43
3355 5706 7.387643 GTGGATAAAAGGGGATGTATCTAGAC 58.612 42.308 0.00 0.00 0.00 2.59
3356 5707 6.210784 TGGATAAAAGGGGATGTATCTAGACG 59.789 42.308 0.00 0.00 0.00 4.18
3357 5708 6.210984 GGATAAAAGGGGATGTATCTAGACGT 59.789 42.308 0.00 0.00 0.00 4.34
3358 5709 7.395489 GGATAAAAGGGGATGTATCTAGACGTA 59.605 40.741 0.00 0.00 0.00 3.57
3359 5710 6.651975 AAAAGGGGATGTATCTAGACGTAG 57.348 41.667 0.00 0.00 0.00 3.51
3360 5711 4.304048 AGGGGATGTATCTAGACGTAGG 57.696 50.000 0.00 0.00 0.00 3.18
3361 5712 3.656751 AGGGGATGTATCTAGACGTAGGT 59.343 47.826 0.00 0.00 0.00 3.08
3362 5713 4.009002 GGGGATGTATCTAGACGTAGGTC 58.991 52.174 7.49 7.49 43.76 3.85
3375 5726 4.009002 GACGTAGGTCTAGATACATCCCC 58.991 52.174 8.31 0.00 40.15 4.81
3376 5727 3.656751 ACGTAGGTCTAGATACATCCCCT 59.343 47.826 0.00 0.00 0.00 4.79
3377 5728 4.106019 ACGTAGGTCTAGATACATCCCCTT 59.894 45.833 0.00 0.00 0.00 3.95
3378 5729 5.078256 CGTAGGTCTAGATACATCCCCTTT 58.922 45.833 0.00 0.00 0.00 3.11
3379 5730 5.539193 CGTAGGTCTAGATACATCCCCTTTT 59.461 44.000 0.00 0.00 0.00 2.27
3380 5731 6.718454 CGTAGGTCTAGATACATCCCCTTTTA 59.282 42.308 0.00 0.00 0.00 1.52
3381 5732 7.396623 CGTAGGTCTAGATACATCCCCTTTTAT 59.603 40.741 0.00 0.00 0.00 1.40
3382 5733 7.800300 AGGTCTAGATACATCCCCTTTTATC 57.200 40.000 0.00 0.00 0.00 1.75
3383 5734 6.731448 AGGTCTAGATACATCCCCTTTTATCC 59.269 42.308 0.00 0.00 0.00 2.59
3384 5735 6.500751 GGTCTAGATACATCCCCTTTTATCCA 59.499 42.308 0.00 0.00 0.00 3.41
3385 5736 7.182930 GGTCTAGATACATCCCCTTTTATCCAT 59.817 40.741 0.00 0.00 0.00 3.41
3386 5737 8.606830 GTCTAGATACATCCCCTTTTATCCATT 58.393 37.037 0.00 0.00 0.00 3.16
3387 5738 9.182642 TCTAGATACATCCCCTTTTATCCATTT 57.817 33.333 0.00 0.00 0.00 2.32
3388 5739 9.813826 CTAGATACATCCCCTTTTATCCATTTT 57.186 33.333 0.00 0.00 0.00 1.82
3389 5740 8.482852 AGATACATCCCCTTTTATCCATTTTG 57.517 34.615 0.00 0.00 0.00 2.44
3390 5741 5.955961 ACATCCCCTTTTATCCATTTTGG 57.044 39.130 0.00 0.00 39.43 3.28
3391 5742 5.349690 ACATCCCCTTTTATCCATTTTGGT 58.650 37.500 0.00 0.00 39.03 3.67
3392 5743 5.189539 ACATCCCCTTTTATCCATTTTGGTG 59.810 40.000 0.00 0.00 39.03 4.17
3393 5744 5.017093 TCCCCTTTTATCCATTTTGGTGA 57.983 39.130 0.00 0.00 39.03 4.02
3394 5745 4.775253 TCCCCTTTTATCCATTTTGGTGAC 59.225 41.667 0.00 0.00 39.03 3.67
3395 5746 4.530161 CCCCTTTTATCCATTTTGGTGACA 59.470 41.667 0.00 0.00 39.03 3.58
3409 5760 3.061322 TGGTGACAAGTATTTTCGGACG 58.939 45.455 0.00 0.00 37.44 4.79
3410 5761 2.414138 GGTGACAAGTATTTTCGGACGG 59.586 50.000 0.00 0.00 0.00 4.79
3411 5762 3.319755 GTGACAAGTATTTTCGGACGGA 58.680 45.455 0.00 0.00 0.00 4.69
3412 5763 3.367025 GTGACAAGTATTTTCGGACGGAG 59.633 47.826 0.00 0.00 0.00 4.63
3413 5764 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
3414 5765 2.564062 ACAAGTATTTTCGGACGGAGGA 59.436 45.455 0.00 0.00 0.00 3.71
3415 5766 3.187700 CAAGTATTTTCGGACGGAGGAG 58.812 50.000 0.00 0.00 0.00 3.69
3416 5767 2.454538 AGTATTTTCGGACGGAGGAGT 58.545 47.619 0.00 0.00 0.00 3.85
3417 5768 3.624777 AGTATTTTCGGACGGAGGAGTA 58.375 45.455 0.00 0.00 0.00 2.59
3425 5776 5.233083 TCGGACGGAGGAGTATATCTTTA 57.767 43.478 0.00 0.00 0.00 1.85
3525 5884 9.918630 GTTGCCAATCAATAGCATATTTAAGAT 57.081 29.630 0.00 0.00 36.99 2.40
3652 6018 5.348164 CCTTTGCGGGTAATCAAAATTAGG 58.652 41.667 0.00 0.00 32.55 2.69
3815 6892 3.951680 AGTAGCCTTCAGAAGACTAGCTC 59.048 47.826 12.14 6.22 0.00 4.09
3818 6895 2.234908 GCCTTCAGAAGACTAGCTCCAA 59.765 50.000 12.14 0.00 0.00 3.53
3845 6922 3.328382 TTGATGCACTTAGCCTACGTT 57.672 42.857 0.00 0.00 44.83 3.99
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 8.691661 AGAACACCTGTTAAATGTGAACTATT 57.308 30.769 7.14 0.00 38.56 1.73
23 24 7.276658 TGAGAACACCTGTTAAATGTGAACTA 58.723 34.615 7.14 0.00 38.56 2.24
129 131 5.640732 AGATGTGTGTTGTGTTTTGAACTC 58.359 37.500 0.00 0.00 0.00 3.01
168 188 1.303074 AGATGTGTGGTGCAGCAGG 60.303 57.895 20.85 0.00 0.00 4.85
171 191 1.302752 TGGAGATGTGTGGTGCAGC 60.303 57.895 9.47 9.47 0.00 5.25
172 192 0.957395 GGTGGAGATGTGTGGTGCAG 60.957 60.000 0.00 0.00 0.00 4.41
173 193 1.073025 GGTGGAGATGTGTGGTGCA 59.927 57.895 0.00 0.00 0.00 4.57
174 194 0.957395 CTGGTGGAGATGTGTGGTGC 60.957 60.000 0.00 0.00 0.00 5.01
176 196 1.376466 GCTGGTGGAGATGTGTGGT 59.624 57.895 0.00 0.00 0.00 4.16
177 197 0.250858 TTGCTGGTGGAGATGTGTGG 60.251 55.000 0.00 0.00 0.00 4.17
190 240 3.255395 TGGTGTATGATGTGTTTTGCTGG 59.745 43.478 0.00 0.00 0.00 4.85
206 256 2.496070 GCTAGTGGAGATGTGTGGTGTA 59.504 50.000 0.00 0.00 0.00 2.90
287 337 2.435372 TTGAAGGTGCTTTGACTGGT 57.565 45.000 0.00 0.00 0.00 4.00
310 360 1.757699 AGAGGCCGAAGAAGATGGTAC 59.242 52.381 0.00 0.00 0.00 3.34
399 449 2.038659 TCTTTTGCAGAAAACCCCTGG 58.961 47.619 0.00 0.00 32.51 4.45
409 459 5.850557 TGATTCCAAGTTTCTTTTGCAGA 57.149 34.783 0.00 0.00 0.00 4.26
642 726 0.318529 CGCTCACTCATCCTCATCCG 60.319 60.000 0.00 0.00 0.00 4.18
668 758 2.125753 CTCAGCCACTCTGTCCGC 60.126 66.667 0.00 0.00 43.32 5.54
669 759 2.125753 GCTCAGCCACTCTGTCCG 60.126 66.667 0.00 0.00 43.32 4.79
673 776 2.508887 GCGAGCTCAGCCACTCTG 60.509 66.667 15.40 0.00 44.21 3.35
697 800 3.173630 TGGTCCAATAAGTGGCCCCATA 61.174 50.000 0.00 0.00 45.74 2.74
698 801 2.479002 TGGTCCAATAAGTGGCCCCAT 61.479 52.381 0.00 0.00 45.74 4.00
799 906 1.603455 CCGGTTGGGCACATGAACT 60.603 57.895 0.00 0.00 0.00 3.01
888 996 4.515567 GCAGAAAACTAGCTACCACTGTTT 59.484 41.667 3.00 3.00 33.04 2.83
891 999 3.433615 GTGCAGAAAACTAGCTACCACTG 59.566 47.826 0.00 0.00 0.00 3.66
893 1001 3.399330 TGTGCAGAAAACTAGCTACCAC 58.601 45.455 0.00 0.00 0.00 4.16
897 1006 5.468746 ACGATTTTGTGCAGAAAACTAGCTA 59.531 36.000 22.45 0.53 0.00 3.32
898 1007 4.275936 ACGATTTTGTGCAGAAAACTAGCT 59.724 37.500 22.45 7.78 0.00 3.32
899 1008 4.537015 ACGATTTTGTGCAGAAAACTAGC 58.463 39.130 22.45 11.91 0.00 3.42
900 1009 7.855904 ACTTTACGATTTTGTGCAGAAAACTAG 59.144 33.333 22.45 17.73 0.00 2.57
1048 1159 1.227118 GCCGCCTCTAGAGTTCAGC 60.227 63.158 18.42 12.92 0.00 4.26
1050 1161 0.246635 GTTGCCGCCTCTAGAGTTCA 59.753 55.000 18.42 7.53 0.00 3.18
1054 1165 1.066858 TCAAAGTTGCCGCCTCTAGAG 60.067 52.381 13.18 13.18 0.00 2.43
1059 1170 1.282875 GTGTCAAAGTTGCCGCCTC 59.717 57.895 0.00 0.00 0.00 4.70
1063 1174 0.586319 ATGACGTGTCAAAGTTGCCG 59.414 50.000 6.80 0.00 43.58 5.69
1076 1187 0.174845 CACCCACATACCGATGACGT 59.825 55.000 0.00 0.00 36.48 4.34
1083 1194 1.220749 CTCCACCACCCACATACCG 59.779 63.158 0.00 0.00 0.00 4.02
1092 1203 1.908483 GTCCATCCTCTCCACCACC 59.092 63.158 0.00 0.00 0.00 4.61
1110 1221 7.553881 AATACAATTACATCTTTGGGAGTCG 57.446 36.000 0.00 0.00 0.00 4.18
1151 1262 2.425312 ACGCCACAATCACAAGAAAACA 59.575 40.909 0.00 0.00 0.00 2.83
1162 1273 5.092781 ACAAATTAATCGAACGCCACAATC 58.907 37.500 0.00 0.00 0.00 2.67
1164 1275 4.491234 ACAAATTAATCGAACGCCACAA 57.509 36.364 0.00 0.00 0.00 3.33
1169 1280 6.570690 AGACTCTACAAATTAATCGAACGC 57.429 37.500 0.00 0.00 0.00 4.84
1170 1281 7.391786 CCAAGACTCTACAAATTAATCGAACG 58.608 38.462 0.00 0.00 0.00 3.95
1183 1294 4.021229 TCCGAATAAGCCAAGACTCTACA 58.979 43.478 0.00 0.00 0.00 2.74
1198 1311 6.704493 GGTACATCACAGCTTTATTCCGAATA 59.296 38.462 0.00 0.00 0.00 1.75
1203 1316 4.035675 GCAGGTACATCACAGCTTTATTCC 59.964 45.833 0.00 0.00 0.00 3.01
1207 1320 3.694043 TGCAGGTACATCACAGCTTTA 57.306 42.857 0.00 0.00 32.61 1.85
1212 1325 3.314913 TGTGTTTTGCAGGTACATCACAG 59.685 43.478 0.00 0.00 32.21 3.66
1215 1328 5.288015 CAAATGTGTTTTGCAGGTACATCA 58.712 37.500 7.94 5.90 38.42 3.07
1216 1329 5.827568 CAAATGTGTTTTGCAGGTACATC 57.172 39.130 7.94 1.74 38.42 3.06
1250 1363 4.681025 ACGTTAAATATGTTCGACGTGTGT 59.319 37.500 12.72 0.00 37.37 3.72
1264 1377 8.533657 TCCTACCAATCAAAGAGACGTTAAATA 58.466 33.333 0.00 0.00 0.00 1.40
1269 1382 4.884668 TCCTACCAATCAAAGAGACGTT 57.115 40.909 0.00 0.00 0.00 3.99
1279 1392 6.730447 TCCATTTTGAGAATCCTACCAATCA 58.270 36.000 0.00 0.00 0.00 2.57
1280 1393 6.264067 CCTCCATTTTGAGAATCCTACCAATC 59.736 42.308 0.00 0.00 34.11 2.67
1281 1394 6.068853 TCCTCCATTTTGAGAATCCTACCAAT 60.069 38.462 0.00 0.00 34.11 3.16
1282 1395 5.252863 TCCTCCATTTTGAGAATCCTACCAA 59.747 40.000 0.00 0.00 34.11 3.67
1283 1396 4.788075 TCCTCCATTTTGAGAATCCTACCA 59.212 41.667 0.00 0.00 34.11 3.25
1284 1397 5.131142 TCTCCTCCATTTTGAGAATCCTACC 59.869 44.000 0.00 0.00 34.11 3.18
1289 1402 7.175641 TGTTTTCTCTCCTCCATTTTGAGAATC 59.824 37.037 0.00 0.00 41.47 2.52
1302 1415 8.233190 CACTTCAATTATGTGTTTTCTCTCCTC 58.767 37.037 0.00 0.00 0.00 3.71
1333 1449 3.845781 TCATGTAGGATTTGAGAGGGC 57.154 47.619 0.00 0.00 0.00 5.19
1408 1524 5.523438 TTTTGCTACGATTCCTTTGGTTT 57.477 34.783 0.00 0.00 0.00 3.27
1409 1525 5.722021 ATTTTGCTACGATTCCTTTGGTT 57.278 34.783 0.00 0.00 0.00 3.67
1410 1526 5.722021 AATTTTGCTACGATTCCTTTGGT 57.278 34.783 0.00 0.00 0.00 3.67
1411 1527 6.393720 CAAATTTTGCTACGATTCCTTTGG 57.606 37.500 0.00 0.00 0.00 3.28
1439 1555 1.890174 GTTGCGAATTGGAAGGGGG 59.110 57.895 0.00 0.00 0.00 5.40
1440 1556 0.958382 TCGTTGCGAATTGGAAGGGG 60.958 55.000 0.00 0.00 34.90 4.79
1441 1557 0.878416 TTCGTTGCGAATTGGAAGGG 59.122 50.000 0.00 0.00 41.05 3.95
1451 1567 0.108329 GGAGAGGGAATTCGTTGCGA 60.108 55.000 0.00 0.00 0.00 5.10
1452 1568 1.421410 CGGAGAGGGAATTCGTTGCG 61.421 60.000 0.00 0.00 0.00 4.85
1453 1569 0.108329 TCGGAGAGGGAATTCGTTGC 60.108 55.000 0.00 0.00 0.00 4.17
1454 1570 1.204941 AGTCGGAGAGGGAATTCGTTG 59.795 52.381 0.00 0.00 36.95 4.10
1455 1571 1.477295 GAGTCGGAGAGGGAATTCGTT 59.523 52.381 0.00 0.00 36.95 3.85
1456 1572 1.104630 GAGTCGGAGAGGGAATTCGT 58.895 55.000 0.00 0.00 36.95 3.85
1457 1573 0.029567 CGAGTCGGAGAGGGAATTCG 59.970 60.000 4.10 0.00 36.95 3.34
1458 1574 1.104630 ACGAGTCGGAGAGGGAATTC 58.895 55.000 18.30 0.00 36.95 2.17
1459 1575 2.022934 GTACGAGTCGGAGAGGGAATT 58.977 52.381 18.30 0.00 36.95 2.17
1460 1576 1.064906 TGTACGAGTCGGAGAGGGAAT 60.065 52.381 18.30 0.00 36.95 3.01
1461 1577 0.325933 TGTACGAGTCGGAGAGGGAA 59.674 55.000 18.30 0.00 36.95 3.97
1462 1578 0.545171 ATGTACGAGTCGGAGAGGGA 59.455 55.000 18.30 0.00 36.95 4.20
1504 1704 0.029167 TGACGACGACGCAACTAACA 59.971 50.000 7.30 0.00 43.96 2.41
1514 1714 0.043310 GTTGTGCTTGTGACGACGAC 60.043 55.000 0.00 0.00 0.00 4.34
1733 1936 2.228480 GCTGGGTGGGGTTCTGGTA 61.228 63.158 0.00 0.00 0.00 3.25
2034 2246 1.677576 CCGTACGTAACATCTGGGCTA 59.322 52.381 15.21 0.00 0.00 3.93
2043 2255 3.967833 ATGCGCGCCGTACGTAACA 62.968 57.895 30.77 5.62 46.11 2.41
2064 2279 0.175989 GGTAGAAGAAGGTCGCCAGG 59.824 60.000 0.00 0.00 0.00 4.45
2354 2599 3.179265 CGTACTGCCGGAACAGCG 61.179 66.667 5.05 0.00 41.60 5.18
2364 2609 4.436998 AGGCTGGCGTCGTACTGC 62.437 66.667 10.74 10.74 0.00 4.40
2367 2612 2.506438 GTGAGGCTGGCGTCGTAC 60.506 66.667 10.05 1.53 33.98 3.67
2368 2613 3.755628 GGTGAGGCTGGCGTCGTA 61.756 66.667 10.05 0.00 33.98 3.43
2578 2874 1.665599 CCGGTAAACACGCCGACTT 60.666 57.895 4.43 0.00 0.00 3.01
2579 2875 2.048877 CCGGTAAACACGCCGACT 60.049 61.111 4.43 0.00 0.00 4.18
2794 4401 2.415608 GCGTGATCCAGACCTCCGA 61.416 63.158 0.00 0.00 0.00 4.55
2802 4409 0.107508 ACAGATTGGGCGTGATCCAG 60.108 55.000 0.00 0.00 35.48 3.86
2872 4518 2.614057 CCAAGTTCTCACACCAAGTCAC 59.386 50.000 0.00 0.00 0.00 3.67
2880 4526 8.033038 TCACATATTAGTACCAAGTTCTCACAC 58.967 37.037 0.00 0.00 0.00 3.82
3017 5283 8.512138 GGGATCTTATAATTTTATTGACCGGTG 58.488 37.037 14.63 0.00 0.00 4.94
3038 5359 6.854496 TTTATAGTATGCAAACACGGGATC 57.146 37.500 0.00 0.00 0.00 3.36
3042 5363 8.589335 ACTCTATTTATAGTATGCAAACACGG 57.411 34.615 0.00 0.00 0.00 4.94
3169 5520 6.323739 TGAGTGCCTTTACAAAATTCTTTCCT 59.676 34.615 0.00 0.00 0.00 3.36
3170 5521 6.420903 GTGAGTGCCTTTACAAAATTCTTTCC 59.579 38.462 0.00 0.00 0.00 3.13
3228 5579 9.677567 GTGATGCAGTGTTTAATCTTTTTAAGA 57.322 29.630 0.00 0.00 42.69 2.10
3260 5611 5.450274 GGACGGAGAGAGTATTTTCTACCAC 60.450 48.000 0.00 0.00 0.00 4.16
3273 5624 2.299521 AGTATTTCCGGACGGAGAGAG 58.700 52.381 13.64 0.00 46.06 3.20
3274 5625 2.426024 CAAGTATTTCCGGACGGAGAGA 59.574 50.000 13.64 3.93 46.06 3.10
3275 5626 2.165845 ACAAGTATTTCCGGACGGAGAG 59.834 50.000 13.64 0.20 46.06 3.20
3276 5627 2.165030 GACAAGTATTTCCGGACGGAGA 59.835 50.000 13.64 10.06 46.06 3.71
3277 5628 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
3278 5629 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
3279 5630 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
3280 5631 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
3281 5632 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
3282 5633 6.127758 CCATTTTGATGACAAGTATTTCCGGA 60.128 38.462 0.00 0.00 37.32 5.14
3283 5634 6.035843 CCATTTTGATGACAAGTATTTCCGG 58.964 40.000 0.00 0.00 37.32 5.14
3284 5635 6.851609 TCCATTTTGATGACAAGTATTTCCG 58.148 36.000 0.00 0.00 37.32 4.30
3290 5641 8.748412 CCCTTTTATCCATTTTGATGACAAGTA 58.252 33.333 0.00 0.00 37.32 2.24
3291 5642 7.310609 CCCCTTTTATCCATTTTGATGACAAGT 60.311 37.037 0.00 0.00 37.32 3.16
3292 5643 7.043565 CCCCTTTTATCCATTTTGATGACAAG 58.956 38.462 0.00 0.00 37.32 3.16
3293 5644 6.728164 TCCCCTTTTATCCATTTTGATGACAA 59.272 34.615 0.00 0.00 0.00 3.18
3294 5645 6.259893 TCCCCTTTTATCCATTTTGATGACA 58.740 36.000 0.00 0.00 0.00 3.58
3295 5646 6.790232 TCCCCTTTTATCCATTTTGATGAC 57.210 37.500 0.00 0.00 0.00 3.06
3296 5647 6.902416 ACATCCCCTTTTATCCATTTTGATGA 59.098 34.615 0.00 0.00 32.39 2.92
3297 5648 7.128234 ACATCCCCTTTTATCCATTTTGATG 57.872 36.000 0.00 0.00 33.80 3.07
3298 5649 7.290014 GGTACATCCCCTTTTATCCATTTTGAT 59.710 37.037 0.00 0.00 0.00 2.57
3299 5650 6.609616 GGTACATCCCCTTTTATCCATTTTGA 59.390 38.462 0.00 0.00 0.00 2.69
3300 5651 6.611236 AGGTACATCCCCTTTTATCCATTTTG 59.389 38.462 0.00 0.00 36.75 2.44
3301 5652 6.752091 AGGTACATCCCCTTTTATCCATTTT 58.248 36.000 0.00 0.00 36.75 1.82
3302 5653 6.355588 AGGTACATCCCCTTTTATCCATTT 57.644 37.500 0.00 0.00 36.75 2.32
3303 5654 6.855061 TCTAGGTACATCCCCTTTTATCCATT 59.145 38.462 0.00 0.00 36.75 3.16
3304 5655 6.272558 GTCTAGGTACATCCCCTTTTATCCAT 59.727 42.308 0.00 0.00 36.75 3.41
3305 5656 5.605488 GTCTAGGTACATCCCCTTTTATCCA 59.395 44.000 0.00 0.00 36.75 3.41
3306 5657 5.279356 CGTCTAGGTACATCCCCTTTTATCC 60.279 48.000 0.00 0.00 36.75 2.59
3307 5658 5.303845 ACGTCTAGGTACATCCCCTTTTATC 59.696 44.000 0.00 0.00 36.75 1.75
3308 5659 5.070047 CACGTCTAGGTACATCCCCTTTTAT 59.930 44.000 0.00 0.00 36.75 1.40
3309 5660 4.403432 CACGTCTAGGTACATCCCCTTTTA 59.597 45.833 0.00 0.00 36.75 1.52
3310 5661 3.197116 CACGTCTAGGTACATCCCCTTTT 59.803 47.826 0.00 0.00 36.75 2.27
3311 5662 2.764572 CACGTCTAGGTACATCCCCTTT 59.235 50.000 0.00 0.00 36.75 3.11
3312 5663 2.385803 CACGTCTAGGTACATCCCCTT 58.614 52.381 0.00 0.00 36.75 3.95
3313 5664 1.411216 CCACGTCTAGGTACATCCCCT 60.411 57.143 0.00 0.00 36.75 4.79
3314 5665 1.038280 CCACGTCTAGGTACATCCCC 58.962 60.000 0.00 0.00 36.75 4.81
3315 5666 2.062971 TCCACGTCTAGGTACATCCC 57.937 55.000 0.00 0.00 36.75 3.85
3316 5667 5.779529 TTTATCCACGTCTAGGTACATCC 57.220 43.478 0.00 0.00 0.00 3.51
3317 5668 6.214399 CCTTTTATCCACGTCTAGGTACATC 58.786 44.000 0.00 0.00 0.00 3.06
3318 5669 5.070047 CCCTTTTATCCACGTCTAGGTACAT 59.930 44.000 0.00 0.00 0.00 2.29
3319 5670 4.403432 CCCTTTTATCCACGTCTAGGTACA 59.597 45.833 0.00 0.00 0.00 2.90
3320 5671 4.202192 CCCCTTTTATCCACGTCTAGGTAC 60.202 50.000 0.00 0.00 0.00 3.34
3321 5672 3.962718 CCCCTTTTATCCACGTCTAGGTA 59.037 47.826 0.00 0.00 0.00 3.08
3322 5673 2.770232 CCCCTTTTATCCACGTCTAGGT 59.230 50.000 0.00 0.00 0.00 3.08
3323 5674 3.036091 TCCCCTTTTATCCACGTCTAGG 58.964 50.000 0.00 0.00 0.00 3.02
3324 5675 4.101119 ACATCCCCTTTTATCCACGTCTAG 59.899 45.833 0.00 0.00 0.00 2.43
3325 5676 4.035112 ACATCCCCTTTTATCCACGTCTA 58.965 43.478 0.00 0.00 0.00 2.59
3326 5677 2.844348 ACATCCCCTTTTATCCACGTCT 59.156 45.455 0.00 0.00 0.00 4.18
3327 5678 3.277142 ACATCCCCTTTTATCCACGTC 57.723 47.619 0.00 0.00 0.00 4.34
3328 5679 4.658901 AGATACATCCCCTTTTATCCACGT 59.341 41.667 0.00 0.00 0.00 4.49
3329 5680 5.228945 AGATACATCCCCTTTTATCCACG 57.771 43.478 0.00 0.00 0.00 4.94
3330 5681 7.387643 GTCTAGATACATCCCCTTTTATCCAC 58.612 42.308 0.00 0.00 0.00 4.02
3331 5682 6.210784 CGTCTAGATACATCCCCTTTTATCCA 59.789 42.308 0.00 0.00 0.00 3.41
3332 5683 6.210984 ACGTCTAGATACATCCCCTTTTATCC 59.789 42.308 0.00 0.00 0.00 2.59
3333 5684 7.229581 ACGTCTAGATACATCCCCTTTTATC 57.770 40.000 0.00 0.00 0.00 1.75
3334 5685 7.396623 CCTACGTCTAGATACATCCCCTTTTAT 59.603 40.741 0.00 0.00 0.00 1.40
3335 5686 6.718454 CCTACGTCTAGATACATCCCCTTTTA 59.282 42.308 0.00 0.00 0.00 1.52
3336 5687 5.539193 CCTACGTCTAGATACATCCCCTTTT 59.461 44.000 0.00 0.00 0.00 2.27
3337 5688 5.078256 CCTACGTCTAGATACATCCCCTTT 58.922 45.833 0.00 0.00 0.00 3.11
3338 5689 4.106019 ACCTACGTCTAGATACATCCCCTT 59.894 45.833 0.00 0.00 0.00 3.95
3339 5690 3.656751 ACCTACGTCTAGATACATCCCCT 59.343 47.826 0.00 0.00 0.00 4.79
3340 5691 4.009002 GACCTACGTCTAGATACATCCCC 58.991 52.174 0.00 0.00 35.99 4.81
3353 5704 4.009002 GGGGATGTATCTAGACCTACGTC 58.991 52.174 13.85 13.85 39.50 4.34
3354 5705 3.656751 AGGGGATGTATCTAGACCTACGT 59.343 47.826 0.00 0.00 0.00 3.57
3355 5706 4.304048 AGGGGATGTATCTAGACCTACG 57.696 50.000 0.00 0.00 0.00 3.51
3356 5707 6.997942 AAAAGGGGATGTATCTAGACCTAC 57.002 41.667 0.00 0.00 0.00 3.18
3357 5708 7.899709 GGATAAAAGGGGATGTATCTAGACCTA 59.100 40.741 0.00 0.00 0.00 3.08
3358 5709 6.731448 GGATAAAAGGGGATGTATCTAGACCT 59.269 42.308 0.00 0.00 0.00 3.85
3359 5710 6.500751 TGGATAAAAGGGGATGTATCTAGACC 59.499 42.308 0.00 0.00 0.00 3.85
3360 5711 7.554959 TGGATAAAAGGGGATGTATCTAGAC 57.445 40.000 0.00 0.00 0.00 2.59
3361 5712 8.757307 AATGGATAAAAGGGGATGTATCTAGA 57.243 34.615 0.00 0.00 0.00 2.43
3362 5713 9.813826 AAAATGGATAAAAGGGGATGTATCTAG 57.186 33.333 0.00 0.00 0.00 2.43
3363 5714 9.586732 CAAAATGGATAAAAGGGGATGTATCTA 57.413 33.333 0.00 0.00 0.00 1.98
3364 5715 7.510343 CCAAAATGGATAAAAGGGGATGTATCT 59.490 37.037 0.00 0.00 40.96 1.98
3365 5716 7.290014 ACCAAAATGGATAAAAGGGGATGTATC 59.710 37.037 2.85 0.00 40.96 2.24
3366 5717 7.071071 CACCAAAATGGATAAAAGGGGATGTAT 59.929 37.037 2.85 0.00 40.96 2.29
3367 5718 6.382570 CACCAAAATGGATAAAAGGGGATGTA 59.617 38.462 2.85 0.00 40.96 2.29
3368 5719 5.189539 CACCAAAATGGATAAAAGGGGATGT 59.810 40.000 2.85 0.00 40.96 3.06
3369 5720 5.424895 TCACCAAAATGGATAAAAGGGGATG 59.575 40.000 2.85 0.00 40.96 3.51
3370 5721 5.425217 GTCACCAAAATGGATAAAAGGGGAT 59.575 40.000 2.85 0.00 40.96 3.85
3371 5722 4.775253 GTCACCAAAATGGATAAAAGGGGA 59.225 41.667 2.85 0.00 40.96 4.81
3372 5723 4.530161 TGTCACCAAAATGGATAAAAGGGG 59.470 41.667 2.85 0.00 40.96 4.79
3373 5724 5.736951 TGTCACCAAAATGGATAAAAGGG 57.263 39.130 2.85 0.00 40.96 3.95
3374 5725 6.758254 ACTTGTCACCAAAATGGATAAAAGG 58.242 36.000 2.85 0.00 40.96 3.11
3375 5726 9.927668 AATACTTGTCACCAAAATGGATAAAAG 57.072 29.630 2.85 4.20 40.96 2.27
3378 5729 9.921637 GAAAATACTTGTCACCAAAATGGATAA 57.078 29.630 2.85 0.00 40.96 1.75
3379 5730 8.240682 CGAAAATACTTGTCACCAAAATGGATA 58.759 33.333 2.85 0.00 40.96 2.59
3380 5731 7.090173 CGAAAATACTTGTCACCAAAATGGAT 58.910 34.615 2.85 0.00 40.96 3.41
3381 5732 6.442952 CGAAAATACTTGTCACCAAAATGGA 58.557 36.000 2.85 0.00 40.96 3.41
3382 5733 5.633182 CCGAAAATACTTGTCACCAAAATGG 59.367 40.000 0.00 0.00 45.02 3.16
3383 5734 6.362283 GTCCGAAAATACTTGTCACCAAAATG 59.638 38.462 0.00 0.00 0.00 2.32
3384 5735 6.443792 GTCCGAAAATACTTGTCACCAAAAT 58.556 36.000 0.00 0.00 0.00 1.82
3385 5736 5.504337 CGTCCGAAAATACTTGTCACCAAAA 60.504 40.000 0.00 0.00 0.00 2.44
3386 5737 4.024725 CGTCCGAAAATACTTGTCACCAAA 60.025 41.667 0.00 0.00 0.00 3.28
3387 5738 3.495377 CGTCCGAAAATACTTGTCACCAA 59.505 43.478 0.00 0.00 0.00 3.67
3388 5739 3.061322 CGTCCGAAAATACTTGTCACCA 58.939 45.455 0.00 0.00 0.00 4.17
3389 5740 2.414138 CCGTCCGAAAATACTTGTCACC 59.586 50.000 0.00 0.00 0.00 4.02
3390 5741 3.319755 TCCGTCCGAAAATACTTGTCAC 58.680 45.455 0.00 0.00 0.00 3.67
3391 5742 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
3392 5743 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
3393 5744 2.564062 TCCTCCGTCCGAAAATACTTGT 59.436 45.455 0.00 0.00 0.00 3.16
3394 5745 3.187700 CTCCTCCGTCCGAAAATACTTG 58.812 50.000 0.00 0.00 0.00 3.16
3395 5746 2.830321 ACTCCTCCGTCCGAAAATACTT 59.170 45.455 0.00 0.00 0.00 2.24
3396 5747 2.454538 ACTCCTCCGTCCGAAAATACT 58.545 47.619 0.00 0.00 0.00 2.12
3397 5748 2.955477 ACTCCTCCGTCCGAAAATAC 57.045 50.000 0.00 0.00 0.00 1.89
3398 5749 6.243900 AGATATACTCCTCCGTCCGAAAATA 58.756 40.000 0.00 0.00 0.00 1.40
3399 5750 5.078256 AGATATACTCCTCCGTCCGAAAAT 58.922 41.667 0.00 0.00 0.00 1.82
3400 5751 4.467769 AGATATACTCCTCCGTCCGAAAA 58.532 43.478 0.00 0.00 0.00 2.29
3401 5752 4.096190 AGATATACTCCTCCGTCCGAAA 57.904 45.455 0.00 0.00 0.00 3.46
3402 5753 3.784511 AGATATACTCCTCCGTCCGAA 57.215 47.619 0.00 0.00 0.00 4.30
3403 5754 3.784511 AAGATATACTCCTCCGTCCGA 57.215 47.619 0.00 0.00 0.00 4.55
3404 5755 5.220624 CGATAAAGATATACTCCTCCGTCCG 60.221 48.000 0.00 0.00 0.00 4.79
3405 5756 5.066246 CCGATAAAGATATACTCCTCCGTCC 59.934 48.000 0.00 0.00 0.00 4.79
3406 5757 5.448904 GCCGATAAAGATATACTCCTCCGTC 60.449 48.000 0.00 0.00 0.00 4.79
3407 5758 4.398673 GCCGATAAAGATATACTCCTCCGT 59.601 45.833 0.00 0.00 0.00 4.69
3408 5759 4.398358 TGCCGATAAAGATATACTCCTCCG 59.602 45.833 0.00 0.00 0.00 4.63
3409 5760 5.916661 TGCCGATAAAGATATACTCCTCC 57.083 43.478 0.00 0.00 0.00 4.30
3410 5761 7.142680 GCTATGCCGATAAAGATATACTCCTC 58.857 42.308 0.00 0.00 0.00 3.71
3411 5762 6.607600 TGCTATGCCGATAAAGATATACTCCT 59.392 38.462 0.00 0.00 0.00 3.69
3412 5763 6.806751 TGCTATGCCGATAAAGATATACTCC 58.193 40.000 0.00 0.00 0.00 3.85
3413 5764 8.703604 TTTGCTATGCCGATAAAGATATACTC 57.296 34.615 0.00 0.00 0.00 2.59
3414 5765 9.672673 AATTTGCTATGCCGATAAAGATATACT 57.327 29.630 0.00 0.00 0.00 2.12
3417 5768 9.890629 TCTAATTTGCTATGCCGATAAAGATAT 57.109 29.630 0.00 0.00 0.00 1.63
3425 5776 5.764686 TGATTGTCTAATTTGCTATGCCGAT 59.235 36.000 0.00 0.00 0.00 4.18
3527 5886 8.977505 CAAAACTTTCAACATTACCGAATTGAT 58.022 29.630 0.00 0.00 31.45 2.57
3652 6018 1.377333 GGACCTTACAGGCCACAGC 60.377 63.158 5.01 0.00 39.63 4.40
3785 6862 8.719645 AGTCTTCTGAAGGCTACTATTCATAT 57.280 34.615 22.14 0.00 42.79 1.78
3815 6892 4.802039 GCTAAGTGCATCAAATGTCATTGG 59.198 41.667 0.00 0.00 42.31 3.16
3818 6895 4.275810 AGGCTAAGTGCATCAAATGTCAT 58.724 39.130 0.00 0.00 45.15 3.06
3845 6922 4.167892 AGGCATATCAAGGTCACCCATAAA 59.832 41.667 0.00 0.00 0.00 1.40
3917 6994 5.440610 ACTTTGATTGTTCTAGGCTATGGG 58.559 41.667 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.