Multiple sequence alignment - TraesCS2B01G452500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G452500 chr2B 100.000 3888 0 0 1 3888 646452167 646456054 0.000000e+00 7180.0
1 TraesCS2B01G452500 chr2B 89.067 375 37 2 2320 2693 646594784 646595155 2.740000e-126 462.0
2 TraesCS2B01G452500 chr2B 86.928 153 17 3 3571 3721 367783900 367783749 6.680000e-38 169.0
3 TraesCS2B01G452500 chr2B 83.077 130 18 3 3761 3888 303388652 303388779 8.830000e-22 115.0
4 TraesCS2B01G452500 chr2D 96.683 3045 76 15 866 3888 540836160 540839201 0.000000e+00 5040.0
5 TraesCS2B01G452500 chr2D 87.302 378 42 3 2320 2694 540952755 540953129 9.980000e-116 427.0
6 TraesCS2B01G452500 chr2D 86.735 196 23 3 663 857 87946077 87945884 8.460000e-52 215.0
7 TraesCS2B01G452500 chr2A 94.723 1573 74 6 1548 3118 684270032 684271597 0.000000e+00 2436.0
8 TraesCS2B01G452500 chr2A 87.473 463 35 12 874 1321 684269362 684269816 2.680000e-141 512.0
9 TraesCS2B01G452500 chr2A 88.830 376 37 4 2320 2694 684402013 684402384 1.270000e-124 457.0
10 TraesCS2B01G452500 chr2A 87.608 347 34 5 2350 2694 684419407 684419746 1.010000e-105 394.0
11 TraesCS2B01G452500 chr2A 83.700 227 21 6 1333 1559 684269795 684270005 2.370000e-47 200.0
12 TraesCS2B01G452500 chr6A 88.889 378 38 4 3195 3570 552716730 552716355 2.740000e-126 462.0
13 TraesCS2B01G452500 chr6A 88.158 380 38 7 3194 3570 15570212 15569837 2.760000e-121 446.0
14 TraesCS2B01G452500 chr7A 88.654 379 39 4 3194 3570 162765103 162765479 3.540000e-125 459.0
15 TraesCS2B01G452500 chr7A 88.624 378 38 5 3195 3570 162762374 162762748 4.580000e-124 455.0
16 TraesCS2B01G452500 chr7A 82.000 400 58 9 2019 2411 465754459 465754067 1.040000e-85 327.0
17 TraesCS2B01G452500 chr7A 85.211 142 16 4 49 185 674819306 674819447 1.460000e-29 141.0
18 TraesCS2B01G452500 chr7A 82.031 128 23 0 3761 3888 322202755 322202882 4.110000e-20 110.0
19 TraesCS2B01G452500 chr4A 88.654 379 38 5 3194 3570 607328832 607329207 1.270000e-124 457.0
20 TraesCS2B01G452500 chr4A 86.294 197 23 3 663 858 575005253 575005060 1.090000e-50 211.0
21 TraesCS2B01G452500 chr4A 82.781 151 22 3 49 195 3450396 3450246 8.770000e-27 132.0
22 TraesCS2B01G452500 chr1A 88.624 378 40 3 3194 3570 7329094 7329469 1.270000e-124 457.0
23 TraesCS2B01G452500 chr1A 88.391 379 38 6 3194 3570 586938744 586939118 5.920000e-123 451.0
24 TraesCS2B01G452500 chr1A 88.158 380 39 6 3194 3571 586941421 586941796 7.660000e-122 448.0
25 TraesCS2B01G452500 chr1A 83.333 120 20 0 3769 3888 257235806 257235687 1.140000e-20 111.0
26 TraesCS2B01G452500 chr7B 84.900 351 42 7 2069 2411 62404574 62404227 1.030000e-90 344.0
27 TraesCS2B01G452500 chr7B 81.955 399 55 10 2019 2409 633920239 633920628 4.850000e-84 322.0
28 TraesCS2B01G452500 chr7B 88.406 69 8 0 3118 3186 306137456 306137388 2.490000e-12 84.2
29 TraesCS2B01G452500 chr5B 88.832 197 17 3 662 857 589664558 589664366 1.810000e-58 237.0
30 TraesCS2B01G452500 chr5B 90.909 143 11 1 3571 3713 269300814 269300674 1.430000e-44 191.0
31 TraesCS2B01G452500 chr5B 84.211 152 23 1 3570 3721 119459262 119459412 3.130000e-31 147.0
32 TraesCS2B01G452500 chr5A 88.718 195 18 3 663 856 569527433 569527242 6.490000e-58 235.0
33 TraesCS2B01G452500 chr5D 87.437 199 20 5 662 859 2134622 2134816 1.410000e-54 224.0
34 TraesCS2B01G452500 chr5D 90.066 151 15 0 3571 3721 235836662 235836812 3.060000e-46 196.0
35 TraesCS2B01G452500 chr3A 87.113 194 21 3 663 855 527572741 527572551 2.350000e-52 217.0
36 TraesCS2B01G452500 chrUn 85.787 197 24 4 662 857 212984217 212984410 5.090000e-49 206.0
37 TraesCS2B01G452500 chrUn 85.787 197 24 4 662 857 224594953 224595146 5.090000e-49 206.0
38 TraesCS2B01G452500 chrUn 85.787 197 24 4 662 857 230802837 230802644 5.090000e-49 206.0
39 TraesCS2B01G452500 chr6D 90.132 152 14 1 3571 3721 455137336 455137487 3.060000e-46 196.0
40 TraesCS2B01G452500 chr6D 92.208 77 6 0 3118 3194 455137264 455137340 4.110000e-20 110.0
41 TraesCS2B01G452500 chr4B 88.079 151 17 1 3571 3721 447514151 447514300 1.110000e-40 178.0
42 TraesCS2B01G452500 chr4B 88.430 121 10 4 47 165 631558071 631557953 4.050000e-30 143.0
43 TraesCS2B01G452500 chr4B 92.857 56 4 0 3120 3175 334243302 334243357 8.950000e-12 82.4
44 TraesCS2B01G452500 chr6B 87.417 151 15 3 3571 3719 692341603 692341751 1.860000e-38 171.0
45 TraesCS2B01G452500 chr6B 84.768 151 19 3 49 196 183308246 183308395 8.700000e-32 148.0
46 TraesCS2B01G452500 chr6B 94.805 77 4 0 3118 3194 692341531 692341607 1.900000e-23 121.0
47 TraesCS2B01G452500 chr6B 90.476 84 6 2 3112 3194 278479073 278479155 4.110000e-20 110.0
48 TraesCS2B01G452500 chr4D 86.667 150 19 1 3572 3721 360263773 360263625 8.640000e-37 165.0
49 TraesCS2B01G452500 chr4D 85.593 118 17 0 3771 3888 181716269 181716152 1.470000e-24 124.0
50 TraesCS2B01G452500 chr4D 82.171 129 21 2 3761 3888 341681056 341681183 4.110000e-20 110.0
51 TraesCS2B01G452500 chr4D 89.655 58 6 0 3118 3175 454900767 454900824 1.500000e-09 75.0
52 TraesCS2B01G452500 chr3D 83.553 152 22 3 49 197 441388667 441388818 5.240000e-29 139.0
53 TraesCS2B01G452500 chr3D 82.031 128 23 0 3761 3888 396768971 396769098 4.110000e-20 110.0
54 TraesCS2B01G452500 chr1D 85.401 137 17 2 60 193 475925076 475925212 5.240000e-29 139.0
55 TraesCS2B01G452500 chr1D 83.803 142 17 6 44 182 450454817 450454955 3.150000e-26 130.0
56 TraesCS2B01G452500 chr1D 82.812 128 22 0 3761 3888 205862866 205862993 8.830000e-22 115.0
57 TraesCS2B01G452500 chr7D 83.553 152 20 5 49 195 583068891 583069042 1.880000e-28 137.0
58 TraesCS2B01G452500 chr7D 82.031 128 23 0 3761 3888 288931726 288931853 4.110000e-20 110.0
59 TraesCS2B01G452500 chr3B 82.353 153 23 4 48 197 489352724 489352875 3.150000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G452500 chr2B 646452167 646456054 3887 False 7180.000000 7180 100.0000 1 3888 1 chr2B.!!$F2 3887
1 TraesCS2B01G452500 chr2D 540836160 540839201 3041 False 5040.000000 5040 96.6830 866 3888 1 chr2D.!!$F1 3022
2 TraesCS2B01G452500 chr2A 684269362 684271597 2235 False 1049.333333 2436 88.6320 874 3118 3 chr2A.!!$F3 2244
3 TraesCS2B01G452500 chr7A 162762374 162765479 3105 False 457.000000 459 88.6390 3194 3570 2 chr7A.!!$F3 376
4 TraesCS2B01G452500 chr1A 586938744 586941796 3052 False 449.500000 451 88.2745 3194 3571 2 chr1A.!!$F2 377

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
200 201 0.030195 TATGCATGGAGGGAGTGGGA 60.030 55.0 10.16 0.0 0.0 4.37 F
631 632 0.178964 CCCCCTCCACACACACATTT 60.179 55.0 0.00 0.0 0.0 2.32 F
672 673 0.179169 GCGTCTCCTCCGACTGTTAC 60.179 60.0 0.00 0.0 0.0 2.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1105 1130 2.084546 CGGAGAAATGGTGAAGGGAAC 58.915 52.381 0.0 0.0 0.0 3.62 R
1471 1496 4.601019 CATTTTCGTTTCTGCTGTCTTGT 58.399 39.130 0.0 0.0 0.0 3.16 R
2934 2995 1.005924 GATCAGGTGGTGGAATTGGGT 59.994 52.381 0.0 0.0 0.0 4.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 6.922980 TCATACACTCGACTTTACTTTTCG 57.077 37.500 0.00 0.00 0.00 3.46
28 29 6.441274 TCATACACTCGACTTTACTTTTCGT 58.559 36.000 0.00 0.00 34.35 3.85
29 30 6.580041 TCATACACTCGACTTTACTTTTCGTC 59.420 38.462 0.00 0.00 34.35 4.20
31 32 4.738740 ACACTCGACTTTACTTTTCGTCAG 59.261 41.667 0.00 0.00 34.35 3.51
33 34 3.054878 TCGACTTTACTTTTCGTCAGCC 58.945 45.455 0.00 0.00 34.35 4.85
34 35 2.160013 CGACTTTACTTTTCGTCAGCCG 60.160 50.000 0.00 0.00 38.13 5.52
35 36 3.054878 GACTTTACTTTTCGTCAGCCGA 58.945 45.455 0.00 0.00 45.66 5.54
36 37 3.660865 ACTTTACTTTTCGTCAGCCGAT 58.339 40.909 0.00 0.00 46.75 4.18
38 39 5.416947 ACTTTACTTTTCGTCAGCCGATAT 58.583 37.500 0.00 0.00 46.75 1.63
39 40 6.567050 ACTTTACTTTTCGTCAGCCGATATA 58.433 36.000 0.00 0.00 46.75 0.86
40 41 7.037438 ACTTTACTTTTCGTCAGCCGATATAA 58.963 34.615 0.00 0.00 46.75 0.98
42 43 5.968387 ACTTTTCGTCAGCCGATATAAAG 57.032 39.130 6.07 6.07 46.75 1.85
43 44 5.416947 ACTTTTCGTCAGCCGATATAAAGT 58.583 37.500 7.03 7.03 46.75 2.66
45 46 6.474751 ACTTTTCGTCAGCCGATATAAAGTAC 59.525 38.462 9.84 0.00 45.36 2.73
46 47 5.503662 TTCGTCAGCCGATATAAAGTACA 57.496 39.130 0.00 0.00 46.75 2.90
47 48 5.104562 TCGTCAGCCGATATAAAGTACAG 57.895 43.478 0.00 0.00 41.60 2.74
48 49 4.577693 TCGTCAGCCGATATAAAGTACAGT 59.422 41.667 0.00 0.00 41.60 3.55
50 51 5.850128 CGTCAGCCGATATAAAGTACAGTAC 59.150 44.000 2.05 2.05 39.56 2.73
51 52 6.293298 CGTCAGCCGATATAAAGTACAGTACT 60.293 42.308 7.48 7.48 38.85 2.73
52 53 7.076983 GTCAGCCGATATAAAGTACAGTACTC 58.923 42.308 13.86 0.00 38.26 2.59
55 56 5.476254 GCCGATATAAAGTACAGTACTCCCT 59.524 44.000 13.86 4.70 38.26 4.20
56 57 6.015603 GCCGATATAAAGTACAGTACTCCCTT 60.016 42.308 13.86 7.44 38.26 3.95
57 58 7.471120 GCCGATATAAAGTACAGTACTCCCTTT 60.471 40.741 13.86 7.10 38.26 3.11
58 59 9.071276 CCGATATAAAGTACAGTACTCCCTTTA 57.929 37.037 13.86 15.30 38.26 1.85
64 65 7.549147 AAGTACAGTACTCCCTTTATTCACA 57.451 36.000 13.86 0.00 38.26 3.58
66 67 7.970102 AGTACAGTACTCCCTTTATTCACAAA 58.030 34.615 7.48 0.00 32.47 2.83
67 68 8.603304 AGTACAGTACTCCCTTTATTCACAAAT 58.397 33.333 7.48 0.00 32.47 2.32
68 69 9.880157 GTACAGTACTCCCTTTATTCACAAATA 57.120 33.333 3.19 0.00 0.00 1.40
132 133 8.250332 AGACATGTTTTAATGTGTTTGTTCACT 58.750 29.630 0.00 0.00 40.87 3.41
135 136 7.804614 TGTTTTAATGTGTTTGTTCACTCAC 57.195 32.000 0.00 0.00 38.90 3.51
136 137 7.598278 TGTTTTAATGTGTTTGTTCACTCACT 58.402 30.769 0.00 0.00 38.90 3.41
137 138 8.085296 TGTTTTAATGTGTTTGTTCACTCACTT 58.915 29.630 0.00 0.00 38.90 3.16
140 141 5.895636 ATGTGTTTGTTCACTCACTTCAA 57.104 34.783 0.00 0.00 38.90 2.69
141 142 5.895636 TGTGTTTGTTCACTCACTTCAAT 57.104 34.783 0.00 0.00 38.90 2.57
142 143 5.879237 TGTGTTTGTTCACTCACTTCAATC 58.121 37.500 0.00 0.00 38.90 2.67
144 145 4.035091 TGTTTGTTCACTCACTTCAATCCG 59.965 41.667 0.00 0.00 0.00 4.18
145 146 3.469008 TGTTCACTCACTTCAATCCGT 57.531 42.857 0.00 0.00 0.00 4.69
146 147 4.594123 TGTTCACTCACTTCAATCCGTA 57.406 40.909 0.00 0.00 0.00 4.02
147 148 5.147330 TGTTCACTCACTTCAATCCGTAT 57.853 39.130 0.00 0.00 0.00 3.06
148 149 4.929211 TGTTCACTCACTTCAATCCGTATG 59.071 41.667 0.00 0.00 0.00 2.39
151 152 6.275494 TCACTCACTTCAATCCGTATGTAA 57.725 37.500 0.00 0.00 0.00 2.41
152 153 6.873997 TCACTCACTTCAATCCGTATGTAAT 58.126 36.000 0.00 0.00 0.00 1.89
153 154 7.327975 TCACTCACTTCAATCCGTATGTAATT 58.672 34.615 0.00 0.00 0.00 1.40
154 155 7.822334 TCACTCACTTCAATCCGTATGTAATTT 59.178 33.333 0.00 0.00 0.00 1.82
156 157 9.832445 ACTCACTTCAATCCGTATGTAATTTAT 57.168 29.630 0.00 0.00 0.00 1.40
196 197 7.574021 TCTTATATTTATGCATGGAGGGAGT 57.426 36.000 10.16 0.00 0.00 3.85
198 199 2.734755 TTTATGCATGGAGGGAGTGG 57.265 50.000 10.16 0.00 0.00 4.00
200 201 0.030195 TATGCATGGAGGGAGTGGGA 60.030 55.000 10.16 0.00 0.00 4.37
201 202 0.700269 ATGCATGGAGGGAGTGGGAT 60.700 55.000 0.00 0.00 0.00 3.85
202 203 0.030195 TGCATGGAGGGAGTGGGATA 60.030 55.000 0.00 0.00 0.00 2.59
203 204 1.140312 GCATGGAGGGAGTGGGATAA 58.860 55.000 0.00 0.00 0.00 1.75
204 205 1.707427 GCATGGAGGGAGTGGGATAAT 59.293 52.381 0.00 0.00 0.00 1.28
205 206 2.912956 GCATGGAGGGAGTGGGATAATA 59.087 50.000 0.00 0.00 0.00 0.98
206 207 3.307762 GCATGGAGGGAGTGGGATAATAC 60.308 52.174 0.00 0.00 0.00 1.89
207 208 4.171234 CATGGAGGGAGTGGGATAATACT 58.829 47.826 0.00 0.00 0.00 2.12
208 209 4.295905 TGGAGGGAGTGGGATAATACTT 57.704 45.455 0.00 0.00 0.00 2.24
210 211 4.658901 TGGAGGGAGTGGGATAATACTTTC 59.341 45.833 0.00 0.00 0.00 2.62
211 212 4.262506 GGAGGGAGTGGGATAATACTTTCG 60.263 50.000 0.00 0.00 0.00 3.46
212 213 4.553678 AGGGAGTGGGATAATACTTTCGA 58.446 43.478 0.00 0.00 0.00 3.71
213 214 4.344390 AGGGAGTGGGATAATACTTTCGAC 59.656 45.833 0.00 0.00 0.00 4.20
214 215 4.100498 GGGAGTGGGATAATACTTTCGACA 59.900 45.833 0.00 0.00 0.00 4.35
215 216 5.395990 GGGAGTGGGATAATACTTTCGACAA 60.396 44.000 0.00 0.00 0.00 3.18
216 217 6.110707 GGAGTGGGATAATACTTTCGACAAA 58.889 40.000 0.00 0.00 0.00 2.83
218 219 7.282450 GGAGTGGGATAATACTTTCGACAAATT 59.718 37.037 0.00 0.00 0.00 1.82
220 221 7.610305 AGTGGGATAATACTTTCGACAAATTGT 59.390 33.333 0.00 0.00 0.00 2.71
221 222 7.696453 GTGGGATAATACTTTCGACAAATTGTG 59.304 37.037 2.20 0.00 0.00 3.33
223 224 8.241367 GGGATAATACTTTCGACAAATTGTGTT 58.759 33.333 2.20 0.00 41.96 3.32
224 225 9.620660 GGATAATACTTTCGACAAATTGTGTTT 57.379 29.630 2.20 0.00 41.96 2.83
227 228 8.918961 AATACTTTCGACAAATTGTGTTTCAA 57.081 26.923 2.20 0.00 41.96 2.69
231 232 7.220683 ACTTTCGACAAATTGTGTTTCAATCAG 59.779 33.333 2.20 0.00 44.85 2.90
233 234 4.148696 CGACAAATTGTGTTTCAATCAGCC 59.851 41.667 2.20 0.00 44.85 4.85
235 236 6.403866 ACAAATTGTGTTTCAATCAGCCTA 57.596 33.333 0.00 0.00 44.85 3.93
238 239 4.439305 TTGTGTTTCAATCAGCCTATGC 57.561 40.909 0.00 0.00 37.95 3.14
239 240 3.419943 TGTGTTTCAATCAGCCTATGCA 58.580 40.909 0.00 0.00 41.13 3.96
240 241 3.191162 TGTGTTTCAATCAGCCTATGCAC 59.809 43.478 0.00 0.00 41.13 4.57
241 242 3.441572 GTGTTTCAATCAGCCTATGCACT 59.558 43.478 0.00 0.00 41.13 4.40
242 243 4.081406 TGTTTCAATCAGCCTATGCACTT 58.919 39.130 0.00 0.00 41.13 3.16
243 244 5.123820 GTGTTTCAATCAGCCTATGCACTTA 59.876 40.000 0.00 0.00 41.13 2.24
244 245 5.887598 TGTTTCAATCAGCCTATGCACTTAT 59.112 36.000 0.00 0.00 41.13 1.73
245 246 7.012327 GTGTTTCAATCAGCCTATGCACTTATA 59.988 37.037 0.00 0.00 41.13 0.98
246 247 7.227314 TGTTTCAATCAGCCTATGCACTTATAG 59.773 37.037 0.00 0.00 41.13 1.31
257 258 2.361119 TGCACTTATAGGACGCTACTGG 59.639 50.000 0.00 0.00 0.00 4.00
258 259 2.361438 GCACTTATAGGACGCTACTGGT 59.639 50.000 0.00 0.00 0.00 4.00
259 260 3.181478 GCACTTATAGGACGCTACTGGTT 60.181 47.826 0.00 0.00 0.00 3.67
262 263 2.154567 ATAGGACGCTACTGGTTGGA 57.845 50.000 0.00 0.00 0.00 3.53
263 264 1.471119 TAGGACGCTACTGGTTGGAG 58.529 55.000 0.00 0.00 0.00 3.86
264 265 1.448013 GGACGCTACTGGTTGGAGC 60.448 63.158 0.00 0.00 0.00 4.70
265 266 1.592223 GACGCTACTGGTTGGAGCT 59.408 57.895 0.00 0.00 33.91 4.09
267 268 1.293498 CGCTACTGGTTGGAGCTGT 59.707 57.895 0.00 0.00 33.91 4.40
268 269 0.737715 CGCTACTGGTTGGAGCTGTC 60.738 60.000 0.00 0.00 33.91 3.51
269 270 0.321671 GCTACTGGTTGGAGCTGTCA 59.678 55.000 0.00 0.00 33.28 3.58
270 271 1.065854 GCTACTGGTTGGAGCTGTCAT 60.066 52.381 0.00 0.00 33.28 3.06
271 272 2.616510 GCTACTGGTTGGAGCTGTCATT 60.617 50.000 0.00 0.00 33.28 2.57
272 273 1.901591 ACTGGTTGGAGCTGTCATTG 58.098 50.000 0.00 0.00 0.00 2.82
273 274 0.524862 CTGGTTGGAGCTGTCATTGC 59.475 55.000 0.00 0.00 0.00 3.56
275 276 1.503542 GTTGGAGCTGTCATTGCGG 59.496 57.895 0.00 0.00 35.28 5.69
277 278 3.512516 GGAGCTGTCATTGCGGGC 61.513 66.667 0.00 0.00 35.28 6.13
292 293 0.456142 CGGGCCGCTTAAAAGAAAGC 60.456 55.000 15.42 0.00 46.78 3.51
301 302 3.609807 GCTTAAAAGAAAGCTTGATGCCG 59.390 43.478 0.00 0.00 46.74 5.69
302 303 4.798574 CTTAAAAGAAAGCTTGATGCCGT 58.201 39.130 0.00 0.00 44.23 5.68
304 305 3.733443 AAAGAAAGCTTGATGCCGTTT 57.267 38.095 0.00 0.00 44.23 3.60
305 306 2.997485 AGAAAGCTTGATGCCGTTTC 57.003 45.000 0.00 0.00 44.23 2.78
306 307 2.508526 AGAAAGCTTGATGCCGTTTCT 58.491 42.857 0.00 0.00 44.23 2.52
308 309 2.997485 AAGCTTGATGCCGTTTCTTC 57.003 45.000 0.00 0.00 44.23 2.87
309 310 1.896220 AGCTTGATGCCGTTTCTTCA 58.104 45.000 0.00 0.00 44.23 3.02
310 311 2.440409 AGCTTGATGCCGTTTCTTCAT 58.560 42.857 0.00 0.00 44.23 2.57
311 312 3.609853 AGCTTGATGCCGTTTCTTCATA 58.390 40.909 0.00 0.00 44.23 2.15
312 313 4.202441 AGCTTGATGCCGTTTCTTCATAT 58.798 39.130 0.00 0.00 44.23 1.78
313 314 4.641989 AGCTTGATGCCGTTTCTTCATATT 59.358 37.500 0.00 0.00 44.23 1.28
314 315 5.822519 AGCTTGATGCCGTTTCTTCATATTA 59.177 36.000 0.00 0.00 44.23 0.98
315 316 6.488006 AGCTTGATGCCGTTTCTTCATATTAT 59.512 34.615 0.00 0.00 44.23 1.28
316 317 7.661437 AGCTTGATGCCGTTTCTTCATATTATA 59.339 33.333 0.00 0.00 44.23 0.98
345 346 6.790232 AAAAACCTCACCTTCATCTCAAAA 57.210 33.333 0.00 0.00 0.00 2.44
346 347 6.790232 AAAACCTCACCTTCATCTCAAAAA 57.210 33.333 0.00 0.00 0.00 1.94
374 375 9.502145 TTTATAAAAGCTTTCTCGCATTATGTG 57.498 29.630 13.10 0.00 31.29 3.21
375 376 4.361451 AAAGCTTTCTCGCATTATGTGG 57.639 40.909 5.69 0.00 0.00 4.17
377 378 2.939103 AGCTTTCTCGCATTATGTGGAC 59.061 45.455 5.89 0.00 0.00 4.02
378 379 2.677836 GCTTTCTCGCATTATGTGGACA 59.322 45.455 5.89 0.00 0.00 4.02
380 381 4.201950 GCTTTCTCGCATTATGTGGACATT 60.202 41.667 5.89 0.00 37.76 2.71
381 382 5.007626 GCTTTCTCGCATTATGTGGACATTA 59.992 40.000 5.89 0.00 37.76 1.90
382 383 5.984233 TTCTCGCATTATGTGGACATTAC 57.016 39.130 5.89 0.00 37.76 1.89
383 384 5.017294 TCTCGCATTATGTGGACATTACA 57.983 39.130 5.89 0.00 37.76 2.41
384 385 5.610398 TCTCGCATTATGTGGACATTACAT 58.390 37.500 5.89 0.00 41.36 2.29
385 386 5.696270 TCTCGCATTATGTGGACATTACATC 59.304 40.000 5.89 0.00 39.36 3.06
386 387 4.754618 TCGCATTATGTGGACATTACATCC 59.245 41.667 5.89 0.00 39.36 3.51
387 388 4.514816 CGCATTATGTGGACATTACATCCA 59.485 41.667 0.00 0.00 44.20 3.41
395 396 5.955961 TGGACATTACATCCATCTCAAGA 57.044 39.130 0.00 0.00 41.47 3.02
396 397 6.312141 TGGACATTACATCCATCTCAAGAA 57.688 37.500 0.00 0.00 41.47 2.52
397 398 6.720309 TGGACATTACATCCATCTCAAGAAA 58.280 36.000 0.00 0.00 41.47 2.52
398 399 7.174413 TGGACATTACATCCATCTCAAGAAAA 58.826 34.615 0.00 0.00 41.47 2.29
399 400 7.669304 TGGACATTACATCCATCTCAAGAAAAA 59.331 33.333 0.00 0.00 41.47 1.94
478 479 9.471084 AAAATAAACATAAAAACTTCCTCACCG 57.529 29.630 0.00 0.00 0.00 4.94
480 481 2.482721 ACATAAAAACTTCCTCACCGCG 59.517 45.455 0.00 0.00 0.00 6.46
482 483 1.792118 AAAAACTTCCTCACCGCGGC 61.792 55.000 28.58 0.00 0.00 6.53
485 486 4.697756 CTTCCTCACCGCGGCCAA 62.698 66.667 28.58 10.10 0.00 4.52
494 495 3.876198 CGCGGCCAACCAGCATAC 61.876 66.667 2.24 0.00 35.89 2.39
495 496 3.876198 GCGGCCAACCAGCATACG 61.876 66.667 2.24 0.00 36.09 3.06
497 498 3.518068 GGCCAACCAGCATACGCC 61.518 66.667 0.00 0.00 39.83 5.68
498 499 2.749839 GCCAACCAGCATACGCCA 60.750 61.111 0.00 0.00 39.83 5.69
500 501 2.749865 CCAACCAGCATACGCCACG 61.750 63.158 0.00 0.00 39.83 4.94
501 502 2.032634 CAACCAGCATACGCCACGT 61.033 57.895 0.00 0.00 44.35 4.49
502 503 2.032634 AACCAGCATACGCCACGTG 61.033 57.895 9.08 9.08 41.39 4.49
503 504 3.195002 CCAGCATACGCCACGTGG 61.195 66.667 30.66 30.66 41.39 4.94
525 526 3.067106 CGTAGCTGAATGGTCACACTTT 58.933 45.455 0.00 0.00 0.00 2.66
526 527 3.123621 CGTAGCTGAATGGTCACACTTTC 59.876 47.826 0.00 0.00 0.00 2.62
527 528 3.213206 AGCTGAATGGTCACACTTTCA 57.787 42.857 0.00 0.00 34.57 2.69
529 530 2.880890 GCTGAATGGTCACACTTTCACT 59.119 45.455 0.00 0.00 32.96 3.41
531 532 4.384056 CTGAATGGTCACACTTTCACTCT 58.616 43.478 0.00 0.00 32.96 3.24
532 533 4.129380 TGAATGGTCACACTTTCACTCTG 58.871 43.478 0.00 0.00 31.90 3.35
533 534 1.953559 TGGTCACACTTTCACTCTGC 58.046 50.000 0.00 0.00 0.00 4.26
535 536 1.202698 GGTCACACTTTCACTCTGCCT 60.203 52.381 0.00 0.00 0.00 4.75
536 537 2.139118 GTCACACTTTCACTCTGCCTC 58.861 52.381 0.00 0.00 0.00 4.70
537 538 1.762370 TCACACTTTCACTCTGCCTCA 59.238 47.619 0.00 0.00 0.00 3.86
539 540 3.144506 CACACTTTCACTCTGCCTCAAT 58.855 45.455 0.00 0.00 0.00 2.57
540 541 3.058432 CACACTTTCACTCTGCCTCAATG 60.058 47.826 0.00 0.00 0.00 2.82
541 542 3.181451 ACACTTTCACTCTGCCTCAATGA 60.181 43.478 0.00 0.00 0.00 2.57
543 544 3.072184 ACTTTCACTCTGCCTCAATGAGT 59.928 43.478 9.63 0.00 41.15 3.41
544 545 3.777106 TTCACTCTGCCTCAATGAGTT 57.223 42.857 9.63 0.00 38.80 3.01
545 546 3.777106 TCACTCTGCCTCAATGAGTTT 57.223 42.857 9.63 0.00 38.80 2.66
546 547 3.405831 TCACTCTGCCTCAATGAGTTTG 58.594 45.455 9.63 0.00 38.80 2.93
548 549 4.008330 CACTCTGCCTCAATGAGTTTGAT 58.992 43.478 9.63 0.00 43.30 2.57
550 551 5.645067 CACTCTGCCTCAATGAGTTTGATAA 59.355 40.000 9.63 0.00 43.30 1.75
552 553 6.888632 ACTCTGCCTCAATGAGTTTGATAATT 59.111 34.615 9.63 0.00 43.30 1.40
553 554 7.395489 ACTCTGCCTCAATGAGTTTGATAATTT 59.605 33.333 9.63 0.00 43.30 1.82
554 555 8.125978 TCTGCCTCAATGAGTTTGATAATTTT 57.874 30.769 9.63 0.00 43.30 1.82
556 557 8.761575 TGCCTCAATGAGTTTGATAATTTTTC 57.238 30.769 9.63 0.00 43.30 2.29
557 558 8.366401 TGCCTCAATGAGTTTGATAATTTTTCA 58.634 29.630 9.63 0.00 43.30 2.69
559 560 9.695526 CCTCAATGAGTTTGATAATTTTTCACA 57.304 29.630 9.63 0.00 43.30 3.58
562 563 9.801714 CAATGAGTTTGATAATTTTTCACAAGC 57.198 29.630 0.00 0.00 37.53 4.01
563 564 9.545105 AATGAGTTTGATAATTTTTCACAAGCA 57.455 25.926 0.00 0.00 0.00 3.91
564 565 9.715121 ATGAGTTTGATAATTTTTCACAAGCAT 57.285 25.926 0.00 0.00 0.00 3.79
565 566 9.545105 TGAGTTTGATAATTTTTCACAAGCATT 57.455 25.926 0.00 0.00 0.00 3.56
581 582 6.295039 CAAGCATTGCAAAAGAAAAGATGT 57.705 33.333 11.91 0.00 40.39 3.06
582 583 6.721321 CAAGCATTGCAAAAGAAAAGATGTT 58.279 32.000 11.91 0.00 40.39 2.71
584 585 7.647907 AGCATTGCAAAAGAAAAGATGTTAG 57.352 32.000 11.91 0.00 0.00 2.34
585 586 7.436118 AGCATTGCAAAAGAAAAGATGTTAGA 58.564 30.769 11.91 0.00 0.00 2.10
586 587 7.597743 AGCATTGCAAAAGAAAAGATGTTAGAG 59.402 33.333 11.91 0.00 0.00 2.43
590 591 4.686839 AAAGAAAAGATGTTAGAGCCGC 57.313 40.909 0.00 0.00 0.00 6.53
594 595 2.593346 AAGATGTTAGAGCCGCAGAG 57.407 50.000 0.00 0.00 0.00 3.35
596 597 2.656002 AGATGTTAGAGCCGCAGAGTA 58.344 47.619 0.00 0.00 0.00 2.59
597 598 3.024547 AGATGTTAGAGCCGCAGAGTAA 58.975 45.455 0.00 0.00 0.00 2.24
599 600 1.135083 TGTTAGAGCCGCAGAGTAAGC 60.135 52.381 0.00 0.00 0.00 3.09
600 601 1.135083 GTTAGAGCCGCAGAGTAAGCA 60.135 52.381 0.00 0.00 0.00 3.91
602 603 1.216710 GAGCCGCAGAGTAAGCACT 59.783 57.895 0.00 0.00 37.87 4.40
603 604 1.079543 AGCCGCAGAGTAAGCACTG 60.080 57.895 0.00 0.00 34.21 3.66
604 605 1.079819 GCCGCAGAGTAAGCACTGA 60.080 57.895 0.00 0.00 35.72 3.41
605 606 0.670546 GCCGCAGAGTAAGCACTGAA 60.671 55.000 0.00 0.00 35.72 3.02
606 607 1.795768 CCGCAGAGTAAGCACTGAAA 58.204 50.000 0.00 0.00 35.72 2.69
607 608 2.350522 CCGCAGAGTAAGCACTGAAAT 58.649 47.619 0.00 0.00 35.72 2.17
608 609 2.349886 CCGCAGAGTAAGCACTGAAATC 59.650 50.000 0.00 0.00 35.72 2.17
609 610 2.349886 CGCAGAGTAAGCACTGAAATCC 59.650 50.000 0.00 0.00 35.72 3.01
610 611 3.338249 GCAGAGTAAGCACTGAAATCCA 58.662 45.455 0.00 0.00 35.72 3.41
611 612 3.126000 GCAGAGTAAGCACTGAAATCCAC 59.874 47.826 0.00 0.00 35.72 4.02
613 614 3.010420 GAGTAAGCACTGAAATCCACCC 58.990 50.000 0.00 0.00 34.21 4.61
615 616 0.251787 AAGCACTGAAATCCACCCCC 60.252 55.000 0.00 0.00 0.00 5.40
629 630 3.170362 CCCCCTCCACACACACAT 58.830 61.111 0.00 0.00 0.00 3.21
630 631 1.460255 CCCCCTCCACACACACATT 59.540 57.895 0.00 0.00 0.00 2.71
631 632 0.178964 CCCCCTCCACACACACATTT 60.179 55.000 0.00 0.00 0.00 2.32
633 634 2.489985 CCCCCTCCACACACACATTTTA 60.490 50.000 0.00 0.00 0.00 1.52
634 635 3.430453 CCCCTCCACACACACATTTTAT 58.570 45.455 0.00 0.00 0.00 1.40
635 636 3.193267 CCCCTCCACACACACATTTTATG 59.807 47.826 0.00 0.00 0.00 1.90
636 637 3.826157 CCCTCCACACACACATTTTATGT 59.174 43.478 0.00 0.00 46.22 2.29
637 638 4.082787 CCCTCCACACACACATTTTATGTC 60.083 45.833 0.00 0.00 42.70 3.06
638 639 4.518590 CCTCCACACACACATTTTATGTCA 59.481 41.667 0.00 0.00 42.70 3.58
639 640 5.183713 CCTCCACACACACATTTTATGTCAT 59.816 40.000 0.00 0.00 42.70 3.06
640 641 6.252967 TCCACACACACATTTTATGTCATC 57.747 37.500 0.00 0.00 42.70 2.92
641 642 5.088068 CCACACACACATTTTATGTCATCG 58.912 41.667 0.00 0.00 42.70 3.84
642 643 5.334802 CCACACACACATTTTATGTCATCGT 60.335 40.000 0.00 0.00 42.70 3.73
643 644 5.790003 CACACACACATTTTATGTCATCGTC 59.210 40.000 0.00 0.00 42.70 4.20
644 645 5.015108 CACACACATTTTATGTCATCGTCG 58.985 41.667 0.00 0.00 42.70 5.12
645 646 4.021822 CACACATTTTATGTCATCGTCGC 58.978 43.478 0.00 0.00 42.70 5.19
646 647 3.063452 ACACATTTTATGTCATCGTCGCC 59.937 43.478 0.00 0.00 42.70 5.54
647 648 2.284150 ACATTTTATGTCATCGTCGCCG 59.716 45.455 0.00 0.00 39.92 6.46
648 649 0.648441 TTTTATGTCATCGTCGCCGC 59.352 50.000 0.00 0.00 0.00 6.53
649 650 1.476235 TTTATGTCATCGTCGCCGCG 61.476 55.000 6.39 6.39 0.00 6.46
651 652 2.325666 TATGTCATCGTCGCCGCGAA 62.326 55.000 18.71 2.80 44.38 4.70
652 653 3.607987 GTCATCGTCGCCGCGAAG 61.608 66.667 18.71 19.87 44.38 3.79
653 654 4.847516 TCATCGTCGCCGCGAAGG 62.848 66.667 25.04 16.77 44.38 3.46
664 665 4.856607 GCGAAGGCGTCTCCTCCG 62.857 72.222 0.00 0.00 46.47 4.63
665 666 3.132139 CGAAGGCGTCTCCTCCGA 61.132 66.667 0.00 0.00 46.71 4.55
666 667 2.490685 GAAGGCGTCTCCTCCGAC 59.509 66.667 0.00 0.00 46.94 4.79
668 669 2.272918 GAAGGCGTCTCCTCCGACTG 62.273 65.000 0.00 0.00 44.46 3.51
669 670 3.063084 GGCGTCTCCTCCGACTGT 61.063 66.667 0.00 0.00 0.00 3.55
670 671 2.637383 GGCGTCTCCTCCGACTGTT 61.637 63.158 0.00 0.00 0.00 3.16
672 673 0.179169 GCGTCTCCTCCGACTGTTAC 60.179 60.000 0.00 0.00 0.00 2.50
674 675 2.625737 CGTCTCCTCCGACTGTTACTA 58.374 52.381 0.00 0.00 0.00 1.82
675 676 2.351111 CGTCTCCTCCGACTGTTACTAC 59.649 54.545 0.00 0.00 0.00 2.73
676 677 3.341823 GTCTCCTCCGACTGTTACTACA 58.658 50.000 0.00 0.00 0.00 2.74
677 678 3.755378 GTCTCCTCCGACTGTTACTACAA 59.245 47.826 0.00 0.00 32.92 2.41
678 679 3.755378 TCTCCTCCGACTGTTACTACAAC 59.245 47.826 0.00 0.00 32.92 3.32
679 680 3.489355 TCCTCCGACTGTTACTACAACA 58.511 45.455 0.00 0.00 32.92 3.33
681 682 4.022589 TCCTCCGACTGTTACTACAACAAG 60.023 45.833 0.00 0.00 32.92 3.16
682 683 4.235360 CTCCGACTGTTACTACAACAAGG 58.765 47.826 0.00 0.00 32.92 3.61
684 685 4.099881 TCCGACTGTTACTACAACAAGGTT 59.900 41.667 0.00 0.00 32.92 3.50
685 686 4.812626 CCGACTGTTACTACAACAAGGTTT 59.187 41.667 0.00 0.00 32.92 3.27
686 687 5.295045 CCGACTGTTACTACAACAAGGTTTT 59.705 40.000 0.00 0.00 32.92 2.43
687 688 6.183360 CCGACTGTTACTACAACAAGGTTTTT 60.183 38.462 0.00 0.00 32.92 1.94
703 704 1.604604 TTTTTCGGCTTCAGTGAGGG 58.395 50.000 4.22 0.00 0.00 4.30
704 705 0.762418 TTTTCGGCTTCAGTGAGGGA 59.238 50.000 4.22 0.00 0.00 4.20
705 706 0.321671 TTTCGGCTTCAGTGAGGGAG 59.678 55.000 4.22 0.00 0.00 4.30
706 707 1.544825 TTCGGCTTCAGTGAGGGAGG 61.545 60.000 4.22 0.00 0.00 4.30
707 708 2.993853 GGCTTCAGTGAGGGAGGG 59.006 66.667 4.22 0.00 0.00 4.30
709 710 2.993853 CTTCAGTGAGGGAGGGGC 59.006 66.667 0.00 0.00 0.00 5.80
710 711 3.003173 TTCAGTGAGGGAGGGGCG 61.003 66.667 0.00 0.00 0.00 6.13
711 712 3.539593 TTCAGTGAGGGAGGGGCGA 62.540 63.158 0.00 0.00 0.00 5.54
712 713 2.765807 CAGTGAGGGAGGGGCGAT 60.766 66.667 0.00 0.00 0.00 4.58
713 714 2.765807 AGTGAGGGAGGGGCGATG 60.766 66.667 0.00 0.00 0.00 3.84
714 715 2.764128 GTGAGGGAGGGGCGATGA 60.764 66.667 0.00 0.00 0.00 2.92
715 716 2.764128 TGAGGGAGGGGCGATGAC 60.764 66.667 0.00 0.00 0.00 3.06
742 743 3.764466 CCTTCGGCTCGCTCCAGT 61.764 66.667 0.00 0.00 0.00 4.00
743 744 2.507992 CTTCGGCTCGCTCCAGTG 60.508 66.667 0.00 0.00 0.00 3.66
744 745 4.742201 TTCGGCTCGCTCCAGTGC 62.742 66.667 0.00 0.00 0.00 4.40
747 748 2.579201 GGCTCGCTCCAGTGCTTA 59.421 61.111 0.00 0.00 0.00 3.09
749 750 0.389391 GGCTCGCTCCAGTGCTTATA 59.611 55.000 0.00 0.00 0.00 0.98
750 751 1.604185 GGCTCGCTCCAGTGCTTATAG 60.604 57.143 0.00 0.00 0.00 1.31
751 752 1.067821 GCTCGCTCCAGTGCTTATAGT 59.932 52.381 0.00 0.00 0.00 2.12
753 754 1.333931 TCGCTCCAGTGCTTATAGTCG 59.666 52.381 0.00 0.00 0.00 4.18
755 756 2.733517 GCTCCAGTGCTTATAGTCGTC 58.266 52.381 0.00 0.00 0.00 4.20
756 757 2.855187 GCTCCAGTGCTTATAGTCGTCG 60.855 54.545 0.00 0.00 0.00 5.12
757 758 1.065102 TCCAGTGCTTATAGTCGTCGC 59.935 52.381 0.00 0.00 0.00 5.19
759 760 2.289820 CCAGTGCTTATAGTCGTCGCTA 59.710 50.000 0.00 0.00 0.00 4.26
760 761 3.546617 CAGTGCTTATAGTCGTCGCTAG 58.453 50.000 0.00 0.00 0.00 3.42
761 762 2.548904 AGTGCTTATAGTCGTCGCTAGG 59.451 50.000 0.00 0.00 0.00 3.02
762 763 2.290093 GTGCTTATAGTCGTCGCTAGGT 59.710 50.000 0.00 0.00 0.00 3.08
763 764 2.289820 TGCTTATAGTCGTCGCTAGGTG 59.710 50.000 0.00 0.00 0.00 4.00
764 765 2.350580 GCTTATAGTCGTCGCTAGGTGG 60.351 54.545 0.00 0.00 0.00 4.61
765 766 2.627515 TATAGTCGTCGCTAGGTGGT 57.372 50.000 0.00 0.00 0.00 4.16
766 767 1.307097 ATAGTCGTCGCTAGGTGGTC 58.693 55.000 0.00 0.00 0.00 4.02
767 768 0.251354 TAGTCGTCGCTAGGTGGTCT 59.749 55.000 0.00 0.00 0.00 3.85
769 770 1.134159 AGTCGTCGCTAGGTGGTCTAT 60.134 52.381 0.00 0.00 0.00 1.98
770 771 1.002684 GTCGTCGCTAGGTGGTCTATG 60.003 57.143 0.00 0.00 0.00 2.23
771 772 1.134310 TCGTCGCTAGGTGGTCTATGA 60.134 52.381 0.00 0.00 0.00 2.15
772 773 1.674441 CGTCGCTAGGTGGTCTATGAA 59.326 52.381 0.00 0.00 0.00 2.57
773 774 2.541178 CGTCGCTAGGTGGTCTATGAAC 60.541 54.545 0.00 0.00 0.00 3.18
776 777 2.223829 CGCTAGGTGGTCTATGAACCTG 60.224 54.545 3.85 0.00 44.13 4.00
777 778 2.103263 GCTAGGTGGTCTATGAACCTGG 59.897 54.545 3.85 2.12 44.13 4.45
778 779 2.642171 AGGTGGTCTATGAACCTGGA 57.358 50.000 0.00 0.00 42.78 3.86
779 780 3.136641 AGGTGGTCTATGAACCTGGAT 57.863 47.619 0.00 0.00 42.78 3.41
780 781 2.774234 AGGTGGTCTATGAACCTGGATG 59.226 50.000 0.00 0.00 42.78 3.51
781 782 2.505819 GGTGGTCTATGAACCTGGATGT 59.494 50.000 0.00 0.00 40.20 3.06
782 783 3.709653 GGTGGTCTATGAACCTGGATGTA 59.290 47.826 0.00 0.00 40.20 2.29
786 787 7.419750 GGTGGTCTATGAACCTGGATGTATTTA 60.420 40.741 0.00 0.00 40.20 1.40
787 788 8.157476 GTGGTCTATGAACCTGGATGTATTTAT 58.843 37.037 0.00 0.00 40.20 1.40
788 789 8.723365 TGGTCTATGAACCTGGATGTATTTATT 58.277 33.333 0.00 0.00 40.20 1.40
789 790 9.574516 GGTCTATGAACCTGGATGTATTTATTT 57.425 33.333 0.00 0.00 36.32 1.40
818 819 9.813080 CTTCTAGTGTTCTTTGTACTATTTTGC 57.187 33.333 0.00 0.00 0.00 3.68
821 822 6.970484 AGTGTTCTTTGTACTATTTTGCCAG 58.030 36.000 0.00 0.00 0.00 4.85
823 824 7.068226 AGTGTTCTTTGTACTATTTTGCCAGTT 59.932 33.333 0.00 0.00 0.00 3.16
824 825 7.167468 GTGTTCTTTGTACTATTTTGCCAGTTG 59.833 37.037 0.00 0.00 0.00 3.16
825 826 7.067615 TGTTCTTTGTACTATTTTGCCAGTTGA 59.932 33.333 0.00 0.00 0.00 3.18
826 827 7.759489 TCTTTGTACTATTTTGCCAGTTGAT 57.241 32.000 0.00 0.00 0.00 2.57
827 828 7.592938 TCTTTGTACTATTTTGCCAGTTGATG 58.407 34.615 0.00 0.00 0.00 3.07
828 829 7.446931 TCTTTGTACTATTTTGCCAGTTGATGA 59.553 33.333 0.00 0.00 0.00 2.92
829 830 7.517614 TTGTACTATTTTGCCAGTTGATGAA 57.482 32.000 0.00 0.00 0.00 2.57
830 831 7.701539 TGTACTATTTTGCCAGTTGATGAAT 57.298 32.000 0.00 0.00 0.00 2.57
831 832 8.800370 TGTACTATTTTGCCAGTTGATGAATA 57.200 30.769 0.00 0.00 0.00 1.75
832 833 8.892723 TGTACTATTTTGCCAGTTGATGAATAG 58.107 33.333 0.00 0.00 33.84 1.73
833 834 9.109393 GTACTATTTTGCCAGTTGATGAATAGA 57.891 33.333 0.00 0.00 32.65 1.98
835 836 9.193806 ACTATTTTGCCAGTTGATGAATAGATT 57.806 29.630 0.00 0.00 32.65 2.40
840 841 9.859427 TTTGCCAGTTGATGAATAGATTAAAAG 57.141 29.630 0.00 0.00 0.00 2.27
841 842 8.579850 TGCCAGTTGATGAATAGATTAAAAGT 57.420 30.769 0.00 0.00 0.00 2.66
843 844 9.860898 GCCAGTTGATGAATAGATTAAAAGTTT 57.139 29.630 0.00 0.00 0.00 2.66
893 894 6.685403 CGGCAAAAATACGTTTCTAACATAGG 59.315 38.462 0.00 0.00 0.00 2.57
896 897 9.615295 GCAAAAATACGTTTCTAACATAGGAAA 57.385 29.630 0.00 0.00 0.00 3.13
908 909 3.093057 ACATAGGAAAGACGTCTCTGCT 58.907 45.455 20.33 18.73 0.00 4.24
909 910 3.511934 ACATAGGAAAGACGTCTCTGCTT 59.488 43.478 18.48 9.11 0.00 3.91
913 914 3.827302 AGGAAAGACGTCTCTGCTTCTTA 59.173 43.478 20.33 0.00 0.00 2.10
914 915 4.281182 AGGAAAGACGTCTCTGCTTCTTAA 59.719 41.667 20.33 0.00 0.00 1.85
1156 1181 4.274147 TCCTCTAAGTCTAAGCTGTCCTG 58.726 47.826 0.00 0.00 0.00 3.86
1164 1189 7.430760 AAGTCTAAGCTGTCCTGATATTCTT 57.569 36.000 0.00 0.00 0.00 2.52
1298 1323 5.527033 AGCTCAGAGAAGAATTTTTGCAAC 58.473 37.500 0.00 0.00 0.00 4.17
1538 1563 1.204704 TCCCGCAATCTGTACTCTGTG 59.795 52.381 0.00 0.00 0.00 3.66
3032 3095 2.287308 TGCAATGCACGTCTTTACCAAC 60.287 45.455 2.72 0.00 31.71 3.77
3219 3284 2.550830 AATAAATCCGAGGCGCATCT 57.449 45.000 20.86 2.60 0.00 2.90
3334 6076 3.112205 GCGCTCCTCCCCATGACAT 62.112 63.158 0.00 0.00 0.00 3.06
3446 6188 0.609131 GTGTGTCCACCCCCTCATTG 60.609 60.000 0.00 0.00 35.44 2.82
3588 6330 7.240897 TCTAACACAAGTAAGGGTTAGGTCTA 58.759 38.462 14.12 0.00 41.73 2.59
3616 6358 7.502226 AGATCACAAGAAATACACAAGGAACAA 59.498 33.333 0.00 0.00 0.00 2.83
3681 6423 3.433598 CCAAGTCTGTGTTGGAAGGAAGA 60.434 47.826 5.24 0.00 46.53 2.87
3739 6481 3.005578 GGGCTTTATGACGAGGTAGTAGG 59.994 52.174 0.00 0.00 0.00 3.18
3775 6517 9.961265 TGATCAAAATGAAAGATATGATGAAGC 57.039 29.630 0.00 0.00 0.00 3.86
3859 6601 7.307455 GGTGAAATTATATGACGAAGAAGCTCC 60.307 40.741 0.00 0.00 0.00 4.70
3867 6609 2.605366 GACGAAGAAGCTCCACATAAGC 59.395 50.000 0.00 0.00 40.14 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 7.597743 ACGAAAAGTAAAGTCGAGTGTATGATT 59.402 33.333 0.00 0.00 38.16 2.57
3 4 7.088905 ACGAAAAGTAAAGTCGAGTGTATGAT 58.911 34.615 0.00 0.00 38.16 2.45
5 6 6.361481 TGACGAAAAGTAAAGTCGAGTGTATG 59.639 38.462 0.00 0.00 38.16 2.39
6 7 6.441274 TGACGAAAAGTAAAGTCGAGTGTAT 58.559 36.000 0.00 0.00 38.16 2.29
7 8 5.820131 TGACGAAAAGTAAAGTCGAGTGTA 58.180 37.500 0.00 0.00 38.16 2.90
9 10 4.375105 GCTGACGAAAAGTAAAGTCGAGTG 60.375 45.833 0.00 0.00 38.16 3.51
11 12 3.121445 GGCTGACGAAAAGTAAAGTCGAG 59.879 47.826 0.00 0.00 38.16 4.04
12 13 3.054878 GGCTGACGAAAAGTAAAGTCGA 58.945 45.455 0.00 0.00 38.16 4.20
13 14 3.435262 GGCTGACGAAAAGTAAAGTCG 57.565 47.619 0.00 0.00 40.56 4.18
25 26 8.380052 AGTACTGTACTTTATATCGGCTGACGA 61.380 40.741 8.59 8.59 46.55 4.20
26 27 4.856664 ACTGTACTTTATATCGGCTGACG 58.143 43.478 0.00 0.00 46.11 4.35
27 28 6.968250 AGTACTGTACTTTATATCGGCTGAC 58.032 40.000 14.53 0.00 34.86 3.51
28 29 6.206243 GGAGTACTGTACTTTATATCGGCTGA 59.794 42.308 20.54 0.00 39.59 4.26
29 30 6.380190 GGAGTACTGTACTTTATATCGGCTG 58.620 44.000 20.54 0.00 39.59 4.85
31 32 5.476254 AGGGAGTACTGTACTTTATATCGGC 59.524 44.000 20.54 5.61 39.59 5.54
38 39 9.092338 TGTGAATAAAGGGAGTACTGTACTTTA 57.908 33.333 20.54 14.89 39.59 1.85
39 40 7.970102 TGTGAATAAAGGGAGTACTGTACTTT 58.030 34.615 20.54 13.36 39.59 2.66
40 41 7.549147 TGTGAATAAAGGGAGTACTGTACTT 57.451 36.000 20.54 7.96 39.59 2.24
42 43 8.788325 ATTTGTGAATAAAGGGAGTACTGTAC 57.212 34.615 9.93 9.93 0.00 2.90
105 106 9.509855 GTGAACAAACACATTAAAACATGTCTA 57.490 29.630 0.00 0.00 40.11 2.59
106 107 8.250332 AGTGAACAAACACATTAAAACATGTCT 58.750 29.630 0.00 0.00 42.45 3.41
108 109 8.031864 TGAGTGAACAAACACATTAAAACATGT 58.968 29.630 0.00 0.00 42.45 3.21
109 110 8.320295 GTGAGTGAACAAACACATTAAAACATG 58.680 33.333 0.00 0.00 42.45 3.21
110 111 8.250332 AGTGAGTGAACAAACACATTAAAACAT 58.750 29.630 0.00 0.00 42.45 2.71
111 112 7.598278 AGTGAGTGAACAAACACATTAAAACA 58.402 30.769 0.00 0.00 42.45 2.83
112 113 8.460831 AAGTGAGTGAACAAACACATTAAAAC 57.539 30.769 0.00 0.00 42.45 2.43
114 115 7.821652 TGAAGTGAGTGAACAAACACATTAAA 58.178 30.769 0.00 0.00 42.45 1.52
115 116 7.384439 TGAAGTGAGTGAACAAACACATTAA 57.616 32.000 0.00 0.00 42.45 1.40
116 117 6.993786 TGAAGTGAGTGAACAAACACATTA 57.006 33.333 0.00 0.00 42.45 1.90
117 118 5.895636 TGAAGTGAGTGAACAAACACATT 57.104 34.783 0.00 0.00 42.45 2.71
119 120 5.163663 GGATTGAAGTGAGTGAACAAACACA 60.164 40.000 0.00 0.00 42.45 3.72
121 122 4.035091 CGGATTGAAGTGAGTGAACAAACA 59.965 41.667 0.00 0.00 0.00 2.83
123 124 4.196193 ACGGATTGAAGTGAGTGAACAAA 58.804 39.130 0.00 0.00 0.00 2.83
124 125 3.804036 ACGGATTGAAGTGAGTGAACAA 58.196 40.909 0.00 0.00 0.00 2.83
125 126 3.469008 ACGGATTGAAGTGAGTGAACA 57.531 42.857 0.00 0.00 0.00 3.18
126 127 4.929808 ACATACGGATTGAAGTGAGTGAAC 59.070 41.667 0.00 0.00 0.00 3.18
127 128 5.147330 ACATACGGATTGAAGTGAGTGAA 57.853 39.130 0.00 0.00 0.00 3.18
128 129 4.801330 ACATACGGATTGAAGTGAGTGA 57.199 40.909 0.00 0.00 0.00 3.41
129 130 7.539712 AATTACATACGGATTGAAGTGAGTG 57.460 36.000 0.00 0.00 0.00 3.51
130 131 9.832445 ATAAATTACATACGGATTGAAGTGAGT 57.168 29.630 0.00 0.00 0.00 3.41
170 171 9.284131 ACTCCCTCCATGCATAAATATAAGATA 57.716 33.333 0.00 0.00 0.00 1.98
171 172 8.051535 CACTCCCTCCATGCATAAATATAAGAT 58.948 37.037 0.00 0.00 0.00 2.40
172 173 7.397221 CACTCCCTCCATGCATAAATATAAGA 58.603 38.462 0.00 0.00 0.00 2.10
174 175 6.484288 CCACTCCCTCCATGCATAAATATAA 58.516 40.000 0.00 0.00 0.00 0.98
175 176 5.044919 CCCACTCCCTCCATGCATAAATATA 60.045 44.000 0.00 0.00 0.00 0.86
176 177 4.264083 CCCACTCCCTCCATGCATAAATAT 60.264 45.833 0.00 0.00 0.00 1.28
177 178 3.074390 CCCACTCCCTCCATGCATAAATA 59.926 47.826 0.00 0.00 0.00 1.40
179 180 1.215173 CCCACTCCCTCCATGCATAAA 59.785 52.381 0.00 0.00 0.00 1.40
180 181 0.846015 CCCACTCCCTCCATGCATAA 59.154 55.000 0.00 0.00 0.00 1.90
181 182 0.030195 TCCCACTCCCTCCATGCATA 60.030 55.000 0.00 0.00 0.00 3.14
182 183 0.700269 ATCCCACTCCCTCCATGCAT 60.700 55.000 0.00 0.00 0.00 3.96
183 184 0.030195 TATCCCACTCCCTCCATGCA 60.030 55.000 0.00 0.00 0.00 3.96
184 185 1.140312 TTATCCCACTCCCTCCATGC 58.860 55.000 0.00 0.00 0.00 4.06
185 186 4.171234 AGTATTATCCCACTCCCTCCATG 58.829 47.826 0.00 0.00 0.00 3.66
186 187 4.510303 AGTATTATCCCACTCCCTCCAT 57.490 45.455 0.00 0.00 0.00 3.41
187 188 4.295905 AAGTATTATCCCACTCCCTCCA 57.704 45.455 0.00 0.00 0.00 3.86
190 191 4.344390 GTCGAAAGTATTATCCCACTCCCT 59.656 45.833 0.00 0.00 0.00 4.20
191 192 4.100498 TGTCGAAAGTATTATCCCACTCCC 59.900 45.833 0.00 0.00 0.00 4.30
192 193 5.272283 TGTCGAAAGTATTATCCCACTCC 57.728 43.478 0.00 0.00 0.00 3.85
193 194 7.787725 ATTTGTCGAAAGTATTATCCCACTC 57.212 36.000 0.00 0.00 0.00 3.51
194 195 7.610305 ACAATTTGTCGAAAGTATTATCCCACT 59.390 33.333 0.00 0.00 0.00 4.00
195 196 7.696453 CACAATTTGTCGAAAGTATTATCCCAC 59.304 37.037 0.00 0.00 0.00 4.61
196 197 7.392113 ACACAATTTGTCGAAAGTATTATCCCA 59.608 33.333 0.00 0.00 29.79 4.37
198 199 9.620660 AAACACAATTTGTCGAAAGTATTATCC 57.379 29.630 0.00 0.00 37.51 2.59
202 203 8.918961 TTGAAACACAATTTGTCGAAAGTATT 57.081 26.923 0.00 0.00 37.51 1.89
212 213 8.478844 GCATAGGCTGATTGAAACACAATTTGT 61.479 37.037 0.00 0.00 42.00 2.83
213 214 6.183360 GCATAGGCTGATTGAAACACAATTTG 60.183 38.462 0.00 0.00 42.00 2.32
214 215 5.870978 GCATAGGCTGATTGAAACACAATTT 59.129 36.000 0.00 0.00 42.00 1.82
215 216 5.047164 TGCATAGGCTGATTGAAACACAATT 60.047 36.000 0.00 0.00 43.90 2.32
216 217 4.463539 TGCATAGGCTGATTGAAACACAAT 59.536 37.500 0.00 0.00 45.24 2.71
218 219 3.191162 GTGCATAGGCTGATTGAAACACA 59.809 43.478 0.00 0.00 41.91 3.72
220 221 3.689347 AGTGCATAGGCTGATTGAAACA 58.311 40.909 0.00 0.00 41.91 2.83
221 222 4.708726 AAGTGCATAGGCTGATTGAAAC 57.291 40.909 0.00 0.00 41.91 2.78
223 224 6.043127 TCCTATAAGTGCATAGGCTGATTGAA 59.957 38.462 6.27 0.00 45.01 2.69
224 225 5.543790 TCCTATAAGTGCATAGGCTGATTGA 59.456 40.000 6.27 0.00 45.01 2.57
225 226 5.641209 GTCCTATAAGTGCATAGGCTGATTG 59.359 44.000 6.27 0.00 45.01 2.67
226 227 5.567623 CGTCCTATAAGTGCATAGGCTGATT 60.568 44.000 6.27 0.00 45.01 2.57
227 228 4.081972 CGTCCTATAAGTGCATAGGCTGAT 60.082 45.833 6.27 0.00 45.01 2.90
228 229 3.255888 CGTCCTATAAGTGCATAGGCTGA 59.744 47.826 6.27 0.00 45.01 4.26
231 232 2.028930 AGCGTCCTATAAGTGCATAGGC 60.029 50.000 6.27 0.00 45.01 3.93
233 234 5.394802 CAGTAGCGTCCTATAAGTGCATAG 58.605 45.833 0.00 0.00 0.00 2.23
235 236 3.005897 CCAGTAGCGTCCTATAAGTGCAT 59.994 47.826 0.00 0.00 0.00 3.96
238 239 4.360563 CAACCAGTAGCGTCCTATAAGTG 58.639 47.826 0.00 0.00 0.00 3.16
239 240 3.383825 CCAACCAGTAGCGTCCTATAAGT 59.616 47.826 0.00 0.00 0.00 2.24
240 241 3.635373 TCCAACCAGTAGCGTCCTATAAG 59.365 47.826 0.00 0.00 0.00 1.73
241 242 3.634504 TCCAACCAGTAGCGTCCTATAA 58.365 45.455 0.00 0.00 0.00 0.98
242 243 3.220110 CTCCAACCAGTAGCGTCCTATA 58.780 50.000 0.00 0.00 0.00 1.31
243 244 2.032620 CTCCAACCAGTAGCGTCCTAT 58.967 52.381 0.00 0.00 0.00 2.57
244 245 1.471119 CTCCAACCAGTAGCGTCCTA 58.529 55.000 0.00 0.00 0.00 2.94
245 246 1.889530 GCTCCAACCAGTAGCGTCCT 61.890 60.000 0.00 0.00 0.00 3.85
246 247 1.448013 GCTCCAACCAGTAGCGTCC 60.448 63.158 0.00 0.00 0.00 4.79
248 249 1.293498 CAGCTCCAACCAGTAGCGT 59.707 57.895 0.00 0.00 41.19 5.07
249 250 0.737715 GACAGCTCCAACCAGTAGCG 60.738 60.000 0.00 0.00 41.19 4.26
250 251 0.321671 TGACAGCTCCAACCAGTAGC 59.678 55.000 0.00 0.00 36.48 3.58
251 252 3.005554 CAATGACAGCTCCAACCAGTAG 58.994 50.000 0.00 0.00 0.00 2.57
252 253 2.875672 GCAATGACAGCTCCAACCAGTA 60.876 50.000 0.00 0.00 0.00 2.74
253 254 1.901591 CAATGACAGCTCCAACCAGT 58.098 50.000 0.00 0.00 0.00 4.00
254 255 0.524862 GCAATGACAGCTCCAACCAG 59.475 55.000 0.00 0.00 0.00 4.00
257 258 1.503542 CCGCAATGACAGCTCCAAC 59.496 57.895 0.00 0.00 0.00 3.77
258 259 1.675310 CCCGCAATGACAGCTCCAA 60.675 57.895 0.00 0.00 0.00 3.53
259 260 2.046023 CCCGCAATGACAGCTCCA 60.046 61.111 0.00 0.00 0.00 3.86
273 274 0.456142 GCTTTCTTTTAAGCGGCCCG 60.456 55.000 0.00 0.00 40.90 6.13
280 281 4.798574 ACGGCATCAAGCTTTCTTTTAAG 58.201 39.130 0.00 0.00 44.79 1.85
281 282 4.846779 ACGGCATCAAGCTTTCTTTTAA 57.153 36.364 0.00 0.00 44.79 1.52
282 283 4.846779 AACGGCATCAAGCTTTCTTTTA 57.153 36.364 0.00 0.00 44.79 1.52
283 284 3.733443 AACGGCATCAAGCTTTCTTTT 57.267 38.095 0.00 0.00 44.79 2.27
285 286 2.887152 AGAAACGGCATCAAGCTTTCTT 59.113 40.909 0.00 0.00 41.99 2.52
286 287 2.508526 AGAAACGGCATCAAGCTTTCT 58.491 42.857 0.00 0.00 40.72 2.52
287 288 2.997485 AGAAACGGCATCAAGCTTTC 57.003 45.000 0.00 0.00 44.79 2.62
288 289 2.622942 TGAAGAAACGGCATCAAGCTTT 59.377 40.909 0.00 0.00 44.79 3.51
290 291 1.896220 TGAAGAAACGGCATCAAGCT 58.104 45.000 0.00 0.00 44.79 3.74
322 323 6.790232 TTTTGAGATGAAGGTGAGGTTTTT 57.210 33.333 0.00 0.00 0.00 1.94
323 324 6.790232 TTTTTGAGATGAAGGTGAGGTTTT 57.210 33.333 0.00 0.00 0.00 2.43
349 350 8.128582 CCACATAATGCGAGAAAGCTTTTATAA 58.871 33.333 14.05 0.00 36.22 0.98
350 351 7.497579 TCCACATAATGCGAGAAAGCTTTTATA 59.502 33.333 14.05 0.00 36.22 0.98
352 353 5.645929 TCCACATAATGCGAGAAAGCTTTTA 59.354 36.000 14.05 0.00 36.22 1.52
353 354 4.458989 TCCACATAATGCGAGAAAGCTTTT 59.541 37.500 14.05 3.35 36.22 2.27
356 357 2.939103 GTCCACATAATGCGAGAAAGCT 59.061 45.455 0.00 0.00 38.13 3.74
357 358 2.677836 TGTCCACATAATGCGAGAAAGC 59.322 45.455 0.00 0.00 37.71 3.51
358 359 5.490139 AATGTCCACATAATGCGAGAAAG 57.510 39.130 0.00 0.00 35.10 2.62
360 361 5.423886 TGTAATGTCCACATAATGCGAGAA 58.576 37.500 0.00 0.00 35.10 2.87
361 362 5.017294 TGTAATGTCCACATAATGCGAGA 57.983 39.130 0.00 0.00 35.10 4.04
362 363 5.106948 GGATGTAATGTCCACATAATGCGAG 60.107 44.000 0.00 0.00 36.76 5.03
363 364 4.754618 GGATGTAATGTCCACATAATGCGA 59.245 41.667 0.00 0.00 36.76 5.10
364 365 4.514816 TGGATGTAATGTCCACATAATGCG 59.485 41.667 0.00 0.00 40.72 4.73
374 375 7.630242 TTTTCTTGAGATGGATGTAATGTCC 57.370 36.000 0.00 0.00 36.26 4.02
453 454 7.597369 GCGGTGAGGAAGTTTTTATGTTTATTT 59.403 33.333 0.00 0.00 0.00 1.40
455 456 6.617879 GCGGTGAGGAAGTTTTTATGTTTAT 58.382 36.000 0.00 0.00 0.00 1.40
456 457 5.334260 CGCGGTGAGGAAGTTTTTATGTTTA 60.334 40.000 0.00 0.00 0.00 2.01
457 458 4.555906 CGCGGTGAGGAAGTTTTTATGTTT 60.556 41.667 0.00 0.00 0.00 2.83
458 459 3.058501 CGCGGTGAGGAAGTTTTTATGTT 60.059 43.478 0.00 0.00 0.00 2.71
460 461 2.159572 CCGCGGTGAGGAAGTTTTTATG 60.160 50.000 19.50 0.00 0.00 1.90
461 462 2.081462 CCGCGGTGAGGAAGTTTTTAT 58.919 47.619 19.50 0.00 0.00 1.40
462 463 1.515081 CCGCGGTGAGGAAGTTTTTA 58.485 50.000 19.50 0.00 0.00 1.52
463 464 1.792118 GCCGCGGTGAGGAAGTTTTT 61.792 55.000 28.70 0.00 0.00 1.94
464 465 2.258726 GCCGCGGTGAGGAAGTTTT 61.259 57.895 28.70 0.00 0.00 2.43
466 467 4.699522 GGCCGCGGTGAGGAAGTT 62.700 66.667 28.70 0.00 0.00 2.66
468 469 4.697756 TTGGCCGCGGTGAGGAAG 62.698 66.667 28.70 0.00 0.00 3.46
478 479 3.876198 CGTATGCTGGTTGGCCGC 61.876 66.667 0.00 0.00 37.67 6.53
480 481 3.518068 GGCGTATGCTGGTTGGCC 61.518 66.667 6.92 0.00 42.25 5.36
482 483 2.749865 CGTGGCGTATGCTGGTTGG 61.750 63.158 6.92 0.00 42.25 3.77
484 485 2.032634 CACGTGGCGTATGCTGGTT 61.033 57.895 7.95 0.00 38.32 3.67
485 486 2.434185 CACGTGGCGTATGCTGGT 60.434 61.111 7.95 0.00 38.32 4.00
497 498 1.695893 CCATTCAGCTACGCCACGTG 61.696 60.000 9.08 9.08 41.39 4.49
498 499 1.447838 CCATTCAGCTACGCCACGT 60.448 57.895 0.00 0.00 44.35 4.49
500 501 0.391130 TGACCATTCAGCTACGCCAC 60.391 55.000 0.00 0.00 0.00 5.01
501 502 0.391130 GTGACCATTCAGCTACGCCA 60.391 55.000 0.00 0.00 30.10 5.69
502 503 0.391130 TGTGACCATTCAGCTACGCC 60.391 55.000 0.00 0.00 30.10 5.68
503 504 0.721718 GTGTGACCATTCAGCTACGC 59.278 55.000 0.00 0.00 30.10 4.42
504 505 2.370281 AGTGTGACCATTCAGCTACG 57.630 50.000 0.00 0.00 30.10 3.51
505 506 4.065088 TGAAAGTGTGACCATTCAGCTAC 58.935 43.478 0.00 0.00 30.10 3.58
507 508 2.880890 GTGAAAGTGTGACCATTCAGCT 59.119 45.455 0.00 0.00 32.85 4.24
508 509 2.880890 AGTGAAAGTGTGACCATTCAGC 59.119 45.455 0.00 0.00 32.85 4.26
509 510 4.212847 CAGAGTGAAAGTGTGACCATTCAG 59.787 45.833 0.00 0.00 30.94 3.02
510 511 4.129380 CAGAGTGAAAGTGTGACCATTCA 58.871 43.478 0.00 0.00 30.94 2.57
511 512 3.058639 GCAGAGTGAAAGTGTGACCATTC 60.059 47.826 0.00 0.00 30.94 2.67
512 513 2.880890 GCAGAGTGAAAGTGTGACCATT 59.119 45.455 0.00 0.00 30.94 3.16
513 514 2.498167 GCAGAGTGAAAGTGTGACCAT 58.502 47.619 0.00 0.00 30.94 3.55
514 515 1.475034 GGCAGAGTGAAAGTGTGACCA 60.475 52.381 0.00 0.00 30.98 4.02
515 516 1.202698 AGGCAGAGTGAAAGTGTGACC 60.203 52.381 0.00 0.00 39.98 4.02
516 517 2.139118 GAGGCAGAGTGAAAGTGTGAC 58.861 52.381 0.00 0.00 39.26 3.67
517 518 1.762370 TGAGGCAGAGTGAAAGTGTGA 59.238 47.619 0.00 0.00 30.94 3.58
518 519 2.245159 TGAGGCAGAGTGAAAGTGTG 57.755 50.000 0.00 0.00 32.89 3.82
519 520 3.144506 CATTGAGGCAGAGTGAAAGTGT 58.855 45.455 0.00 0.00 0.00 3.55
520 521 3.405831 TCATTGAGGCAGAGTGAAAGTG 58.594 45.455 0.00 0.00 0.00 3.16
521 522 3.072184 ACTCATTGAGGCAGAGTGAAAGT 59.928 43.478 17.66 0.00 40.83 2.66
525 526 3.071457 TCAAACTCATTGAGGCAGAGTGA 59.929 43.478 17.66 8.37 43.08 3.41
526 527 3.405831 TCAAACTCATTGAGGCAGAGTG 58.594 45.455 17.66 6.44 43.08 3.51
527 528 3.777106 TCAAACTCATTGAGGCAGAGT 57.223 42.857 17.66 0.00 43.08 3.24
536 537 9.801714 GCTTGTGAAAAATTATCAAACTCATTG 57.198 29.630 0.00 0.00 40.58 2.82
537 538 9.545105 TGCTTGTGAAAAATTATCAAACTCATT 57.455 25.926 0.00 0.00 0.00 2.57
539 540 9.545105 AATGCTTGTGAAAAATTATCAAACTCA 57.455 25.926 0.00 0.00 0.00 3.41
540 541 9.801714 CAATGCTTGTGAAAAATTATCAAACTC 57.198 29.630 0.00 0.00 0.00 3.01
541 542 8.284693 GCAATGCTTGTGAAAAATTATCAAACT 58.715 29.630 0.00 0.00 0.00 2.66
543 544 8.151141 TGCAATGCTTGTGAAAAATTATCAAA 57.849 26.923 6.82 0.00 0.00 2.69
544 545 7.725818 TGCAATGCTTGTGAAAAATTATCAA 57.274 28.000 6.82 0.00 0.00 2.57
545 546 7.725818 TTGCAATGCTTGTGAAAAATTATCA 57.274 28.000 6.82 0.00 0.00 2.15
546 547 9.109533 CTTTTGCAATGCTTGTGAAAAATTATC 57.890 29.630 6.82 0.00 0.00 1.75
548 549 8.206325 TCTTTTGCAATGCTTGTGAAAAATTA 57.794 26.923 6.82 0.00 0.00 1.40
550 551 6.680874 TCTTTTGCAATGCTTGTGAAAAAT 57.319 29.167 6.82 0.00 0.00 1.82
552 553 6.492007 TTTCTTTTGCAATGCTTGTGAAAA 57.508 29.167 6.82 3.61 0.00 2.29
553 554 6.370994 TCTTTTCTTTTGCAATGCTTGTGAAA 59.629 30.769 6.82 9.39 0.00 2.69
554 555 5.873712 TCTTTTCTTTTGCAATGCTTGTGAA 59.126 32.000 6.82 3.71 0.00 3.18
556 557 5.721876 TCTTTTCTTTTGCAATGCTTGTG 57.278 34.783 6.82 0.00 0.00 3.33
557 558 5.818857 ACATCTTTTCTTTTGCAATGCTTGT 59.181 32.000 6.82 0.00 0.00 3.16
559 560 6.930667 AACATCTTTTCTTTTGCAATGCTT 57.069 29.167 6.82 0.00 0.00 3.91
560 561 7.436118 TCTAACATCTTTTCTTTTGCAATGCT 58.564 30.769 6.82 0.00 0.00 3.79
561 562 7.620806 GCTCTAACATCTTTTCTTTTGCAATGC 60.621 37.037 0.00 0.00 0.00 3.56
562 563 7.148689 GGCTCTAACATCTTTTCTTTTGCAATG 60.149 37.037 0.00 0.00 0.00 2.82
563 564 6.870439 GGCTCTAACATCTTTTCTTTTGCAAT 59.130 34.615 0.00 0.00 0.00 3.56
564 565 6.215845 GGCTCTAACATCTTTTCTTTTGCAA 58.784 36.000 0.00 0.00 0.00 4.08
565 566 5.562696 CGGCTCTAACATCTTTTCTTTTGCA 60.563 40.000 0.00 0.00 0.00 4.08
566 567 4.853743 CGGCTCTAACATCTTTTCTTTTGC 59.146 41.667 0.00 0.00 0.00 3.68
568 569 4.518970 TGCGGCTCTAACATCTTTTCTTTT 59.481 37.500 0.00 0.00 0.00 2.27
570 571 3.674997 TGCGGCTCTAACATCTTTTCTT 58.325 40.909 0.00 0.00 0.00 2.52
571 572 3.055819 TCTGCGGCTCTAACATCTTTTCT 60.056 43.478 0.00 0.00 0.00 2.52
572 573 3.262420 TCTGCGGCTCTAACATCTTTTC 58.738 45.455 0.00 0.00 0.00 2.29
573 574 3.265791 CTCTGCGGCTCTAACATCTTTT 58.734 45.455 0.00 0.00 0.00 2.27
574 575 2.234908 ACTCTGCGGCTCTAACATCTTT 59.765 45.455 0.00 0.00 0.00 2.52
575 576 1.827969 ACTCTGCGGCTCTAACATCTT 59.172 47.619 0.00 0.00 0.00 2.40
576 577 1.479709 ACTCTGCGGCTCTAACATCT 58.520 50.000 0.00 0.00 0.00 2.90
577 578 3.376540 CTTACTCTGCGGCTCTAACATC 58.623 50.000 0.00 0.00 0.00 3.06
578 579 2.482142 GCTTACTCTGCGGCTCTAACAT 60.482 50.000 0.00 0.00 0.00 2.71
580 581 1.135083 TGCTTACTCTGCGGCTCTAAC 60.135 52.381 0.00 0.00 0.00 2.34
581 582 1.135083 GTGCTTACTCTGCGGCTCTAA 60.135 52.381 0.00 0.00 0.00 2.10
582 583 0.456221 GTGCTTACTCTGCGGCTCTA 59.544 55.000 0.00 0.00 0.00 2.43
584 585 1.080995 CAGTGCTTACTCTGCGGCTC 61.081 60.000 0.00 0.00 31.23 4.70
585 586 1.079543 CAGTGCTTACTCTGCGGCT 60.080 57.895 0.00 0.00 31.23 5.52
586 587 0.670546 TTCAGTGCTTACTCTGCGGC 60.671 55.000 0.00 0.00 37.33 6.53
590 591 3.686726 GGTGGATTTCAGTGCTTACTCTG 59.313 47.826 0.00 0.00 38.49 3.35
594 595 2.092323 GGGGTGGATTTCAGTGCTTAC 58.908 52.381 0.00 0.00 0.00 2.34
596 597 0.251787 GGGGGTGGATTTCAGTGCTT 60.252 55.000 0.00 0.00 0.00 3.91
597 598 1.384191 GGGGGTGGATTTCAGTGCT 59.616 57.895 0.00 0.00 0.00 4.40
613 614 1.703411 AAAATGTGTGTGTGGAGGGG 58.297 50.000 0.00 0.00 0.00 4.79
615 616 4.518590 TGACATAAAATGTGTGTGTGGAGG 59.481 41.667 0.00 0.00 45.03 4.30
617 618 5.106752 CGATGACATAAAATGTGTGTGTGGA 60.107 40.000 0.00 0.00 45.03 4.02
618 619 5.088068 CGATGACATAAAATGTGTGTGTGG 58.912 41.667 0.00 0.00 45.03 4.17
619 620 5.688823 ACGATGACATAAAATGTGTGTGTG 58.311 37.500 0.00 0.00 45.03 3.82
620 621 5.389411 CGACGATGACATAAAATGTGTGTGT 60.389 40.000 0.00 0.00 45.03 3.72
624 625 3.063452 GGCGACGATGACATAAAATGTGT 59.937 43.478 0.00 0.00 45.03 3.72
625 626 3.607439 GGCGACGATGACATAAAATGTG 58.393 45.455 0.00 0.00 45.03 3.21
653 654 0.179169 GTAACAGTCGGAGGAGACGC 60.179 60.000 0.00 0.00 45.26 5.19
654 655 1.451067 AGTAACAGTCGGAGGAGACG 58.549 55.000 0.00 0.00 45.26 4.18
656 657 3.708403 TGTAGTAACAGTCGGAGGAGA 57.292 47.619 0.00 0.00 0.00 3.71
657 658 3.504906 TGTTGTAGTAACAGTCGGAGGAG 59.495 47.826 0.00 0.00 36.83 3.69
658 659 3.489355 TGTTGTAGTAACAGTCGGAGGA 58.511 45.455 0.00 0.00 36.83 3.71
659 660 3.928727 TGTTGTAGTAACAGTCGGAGG 57.071 47.619 0.00 0.00 36.83 4.30
661 662 3.638160 ACCTTGTTGTAGTAACAGTCGGA 59.362 43.478 0.00 0.00 36.83 4.55
662 663 3.986277 ACCTTGTTGTAGTAACAGTCGG 58.014 45.455 0.00 0.00 36.83 4.79
684 685 1.142060 TCCCTCACTGAAGCCGAAAAA 59.858 47.619 0.00 0.00 0.00 1.94
685 686 0.762418 TCCCTCACTGAAGCCGAAAA 59.238 50.000 0.00 0.00 0.00 2.29
686 687 0.321671 CTCCCTCACTGAAGCCGAAA 59.678 55.000 0.00 0.00 0.00 3.46
687 688 1.544825 CCTCCCTCACTGAAGCCGAA 61.545 60.000 0.00 0.00 0.00 4.30
688 689 1.984570 CCTCCCTCACTGAAGCCGA 60.985 63.158 0.00 0.00 0.00 5.54
689 690 2.581354 CCTCCCTCACTGAAGCCG 59.419 66.667 0.00 0.00 0.00 5.52
690 691 2.674220 CCCCTCCCTCACTGAAGCC 61.674 68.421 0.00 0.00 0.00 4.35
691 692 2.993853 CCCCTCCCTCACTGAAGC 59.006 66.667 0.00 0.00 0.00 3.86
693 694 2.822643 ATCGCCCCTCCCTCACTGAA 62.823 60.000 0.00 0.00 0.00 3.02
694 695 3.317436 ATCGCCCCTCCCTCACTGA 62.317 63.158 0.00 0.00 0.00 3.41
696 697 2.765807 CATCGCCCCTCCCTCACT 60.766 66.667 0.00 0.00 0.00 3.41
697 698 2.764128 TCATCGCCCCTCCCTCAC 60.764 66.667 0.00 0.00 0.00 3.51
699 700 3.917760 CGTCATCGCCCCTCCCTC 61.918 72.222 0.00 0.00 0.00 4.30
726 727 2.507992 CACTGGAGCGAGCCGAAG 60.508 66.667 0.00 0.00 0.00 3.79
727 728 4.742201 GCACTGGAGCGAGCCGAA 62.742 66.667 0.00 0.00 0.00 4.30
729 730 2.635229 ATAAGCACTGGAGCGAGCCG 62.635 60.000 0.00 0.00 40.15 5.52
730 731 0.389391 TATAAGCACTGGAGCGAGCC 59.611 55.000 0.00 0.00 40.15 4.70
731 732 1.067821 ACTATAAGCACTGGAGCGAGC 59.932 52.381 0.00 0.00 40.15 5.03
732 733 2.603412 CGACTATAAGCACTGGAGCGAG 60.603 54.545 0.00 0.00 40.15 5.03
733 734 1.333931 CGACTATAAGCACTGGAGCGA 59.666 52.381 0.00 0.00 40.15 4.93
734 735 1.065701 ACGACTATAAGCACTGGAGCG 59.934 52.381 0.00 0.00 40.15 5.03
735 736 2.733517 GACGACTATAAGCACTGGAGC 58.266 52.381 0.00 0.00 0.00 4.70
737 738 1.065102 GCGACGACTATAAGCACTGGA 59.935 52.381 0.00 0.00 0.00 3.86
738 739 1.065701 AGCGACGACTATAAGCACTGG 59.934 52.381 0.00 0.00 0.00 4.00
740 741 2.548904 CCTAGCGACGACTATAAGCACT 59.451 50.000 0.00 0.00 0.00 4.40
741 742 2.290093 ACCTAGCGACGACTATAAGCAC 59.710 50.000 0.00 0.00 0.00 4.40
742 743 2.289820 CACCTAGCGACGACTATAAGCA 59.710 50.000 0.00 0.00 0.00 3.91
743 744 2.350580 CCACCTAGCGACGACTATAAGC 60.351 54.545 0.00 0.00 0.00 3.09
744 745 2.877168 ACCACCTAGCGACGACTATAAG 59.123 50.000 0.00 0.00 0.00 1.73
745 746 2.874701 GACCACCTAGCGACGACTATAA 59.125 50.000 0.00 0.00 0.00 0.98
747 748 1.134159 AGACCACCTAGCGACGACTAT 60.134 52.381 0.00 0.00 0.00 2.12
749 750 0.251354 TAGACCACCTAGCGACGACT 59.749 55.000 0.00 0.00 0.00 4.18
750 751 1.002684 CATAGACCACCTAGCGACGAC 60.003 57.143 0.00 0.00 0.00 4.34
751 752 1.134310 TCATAGACCACCTAGCGACGA 60.134 52.381 0.00 0.00 0.00 4.20
753 754 2.223758 GGTTCATAGACCACCTAGCGAC 60.224 54.545 0.00 0.00 39.57 5.19
755 756 2.032620 AGGTTCATAGACCACCTAGCG 58.967 52.381 0.00 0.00 42.35 4.26
756 757 2.103263 CCAGGTTCATAGACCACCTAGC 59.897 54.545 0.00 0.00 39.01 3.42
757 758 3.643237 TCCAGGTTCATAGACCACCTAG 58.357 50.000 0.00 0.00 39.01 3.02
759 760 2.642171 TCCAGGTTCATAGACCACCT 57.358 50.000 0.00 0.00 41.97 4.00
760 761 2.505819 ACATCCAGGTTCATAGACCACC 59.494 50.000 0.00 0.00 42.35 4.61
761 762 3.914426 ACATCCAGGTTCATAGACCAC 57.086 47.619 0.00 0.00 42.35 4.16
762 763 6.575244 AAATACATCCAGGTTCATAGACCA 57.425 37.500 0.00 0.00 42.35 4.02
763 764 9.574516 AAATAAATACATCCAGGTTCATAGACC 57.425 33.333 0.00 0.00 40.11 3.85
792 793 9.813080 GCAAAATAGTACAAAGAACACTAGAAG 57.187 33.333 0.00 0.00 0.00 2.85
793 794 8.780249 GGCAAAATAGTACAAAGAACACTAGAA 58.220 33.333 0.00 0.00 0.00 2.10
797 798 6.546034 ACTGGCAAAATAGTACAAAGAACACT 59.454 34.615 0.00 0.00 0.00 3.55
798 799 6.735130 ACTGGCAAAATAGTACAAAGAACAC 58.265 36.000 0.00 0.00 0.00 3.32
799 800 6.952773 ACTGGCAAAATAGTACAAAGAACA 57.047 33.333 0.00 0.00 0.00 3.18
801 802 7.575414 TCAACTGGCAAAATAGTACAAAGAA 57.425 32.000 0.00 0.00 0.00 2.52
802 803 7.446931 TCATCAACTGGCAAAATAGTACAAAGA 59.553 33.333 0.00 0.00 0.00 2.52
803 804 7.592938 TCATCAACTGGCAAAATAGTACAAAG 58.407 34.615 0.00 0.00 0.00 2.77
804 805 7.517614 TCATCAACTGGCAAAATAGTACAAA 57.482 32.000 0.00 0.00 0.00 2.83
806 807 7.701539 ATTCATCAACTGGCAAAATAGTACA 57.298 32.000 0.00 0.00 0.00 2.90
807 808 9.109393 TCTATTCATCAACTGGCAAAATAGTAC 57.891 33.333 0.00 0.00 30.79 2.73
808 809 9.851686 ATCTATTCATCAACTGGCAAAATAGTA 57.148 29.630 0.00 0.00 30.79 1.82
815 816 9.023962 ACTTTTAATCTATTCATCAACTGGCAA 57.976 29.630 0.00 0.00 0.00 4.52
817 818 9.860898 AAACTTTTAATCTATTCATCAACTGGC 57.139 29.630 0.00 0.00 0.00 4.85
859 860 3.057806 ACGTATTTTTGCCGGAGAAAAGG 60.058 43.478 5.05 7.49 0.00 3.11
860 861 4.155310 ACGTATTTTTGCCGGAGAAAAG 57.845 40.909 5.05 2.53 0.00 2.27
862 863 4.276431 AGAAACGTATTTTTGCCGGAGAAA 59.724 37.500 5.05 1.31 0.00 2.52
863 864 3.816523 AGAAACGTATTTTTGCCGGAGAA 59.183 39.130 5.05 0.00 0.00 2.87
864 865 3.404899 AGAAACGTATTTTTGCCGGAGA 58.595 40.909 5.05 0.00 0.00 3.71
870 871 9.615295 TTTCCTATGTTAGAAACGTATTTTTGC 57.385 29.630 0.00 0.00 32.78 3.68
893 894 4.982916 TGTTAAGAAGCAGAGACGTCTTTC 59.017 41.667 21.08 18.34 38.89 2.62
896 897 4.461081 AGATGTTAAGAAGCAGAGACGTCT 59.539 41.667 20.18 20.18 0.00 4.18
897 898 4.739195 AGATGTTAAGAAGCAGAGACGTC 58.261 43.478 7.70 7.70 0.00 4.34
908 909 4.627284 TCGGTTGGGAAGATGTTAAGAA 57.373 40.909 0.00 0.00 0.00 2.52
909 910 4.320870 GTTCGGTTGGGAAGATGTTAAGA 58.679 43.478 0.00 0.00 0.00 2.10
913 914 1.519408 CGTTCGGTTGGGAAGATGTT 58.481 50.000 0.00 0.00 0.00 2.71
914 915 0.321298 CCGTTCGGTTGGGAAGATGT 60.321 55.000 2.82 0.00 0.00 3.06
1029 1054 2.856988 GGGGTGGGGTTGAGTCCA 60.857 66.667 0.00 0.00 0.00 4.02
1105 1130 2.084546 CGGAGAAATGGTGAAGGGAAC 58.915 52.381 0.00 0.00 0.00 3.62
1156 1181 8.797438 GGGAAATCAGGAAATGGTAAGAATATC 58.203 37.037 0.00 0.00 0.00 1.63
1164 1189 3.680777 GGGGGAAATCAGGAAATGGTA 57.319 47.619 0.00 0.00 0.00 3.25
1298 1323 7.496529 TGTTGAGGATAACTGAACTGAAAAG 57.503 36.000 0.00 0.00 0.00 2.27
1471 1496 4.601019 CATTTTCGTTTCTGCTGTCTTGT 58.399 39.130 0.00 0.00 0.00 3.16
2934 2995 1.005924 GATCAGGTGGTGGAATTGGGT 59.994 52.381 0.00 0.00 0.00 4.51
3010 3072 2.158559 TGGTAAAGACGTGCATTGCAT 58.841 42.857 15.49 0.00 41.91 3.96
3219 3284 3.007506 TGCTTGGAACTTGGTAGATCGAA 59.992 43.478 0.00 0.00 0.00 3.71
3446 6188 5.992217 CACTTGTATCCTTGGCCTCTTATAC 59.008 44.000 3.32 8.00 0.00 1.47
3588 6330 8.352942 GTTCCTTGTGTATTTCTTGTGATCTTT 58.647 33.333 0.00 0.00 0.00 2.52
3616 6358 8.743714 CCTTAAGTTCCTTGCTATTCTTGAAAT 58.256 33.333 0.97 0.00 0.00 2.17
3713 6455 0.249489 CCTCGTCATAAAGCCCCTCG 60.249 60.000 0.00 0.00 0.00 4.63
3739 6481 7.596494 TCTTTCATTTTGATCATGTCACCTTC 58.404 34.615 0.00 0.00 36.32 3.46
3775 6517 9.212641 CATATATGTAGTTCCATTGACCTTCTG 57.787 37.037 4.43 0.00 0.00 3.02
3841 6583 5.791336 ATGTGGAGCTTCTTCGTCATATA 57.209 39.130 0.00 0.00 0.00 0.86
3859 6601 4.363138 TGACGATGAGCTAAGCTTATGTG 58.637 43.478 6.64 0.00 39.88 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.