Multiple sequence alignment - TraesCS2B01G452200
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BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS2B01G452200
chr2B
100.000
5065
0
0
925
5989
646210086
646215150
0.000000e+00
9354.0
1
TraesCS2B01G452200
chr2B
100.000
534
0
0
1
534
646209162
646209695
0.000000e+00
987.0
2
TraesCS2B01G452200
chr2D
93.766
3818
163
34
925
4710
540815421
540819195
0.000000e+00
5662.0
3
TraesCS2B01G452200
chr2D
86.902
1275
87
49
4740
5989
540824082
540825301
0.000000e+00
1356.0
4
TraesCS2B01G452200
chr2D
86.772
567
21
20
1
531
540814768
540815316
3.110000e-162
582.0
5
TraesCS2B01G452200
chr2D
82.292
96
12
4
4879
4971
413953877
413953784
1.790000e-10
78.7
6
TraesCS2B01G452200
chr2A
90.545
1872
103
28
3878
5728
684245364
684247182
0.000000e+00
2409.0
7
TraesCS2B01G452200
chr2A
95.095
1101
41
6
2754
3843
684244273
684245371
0.000000e+00
1722.0
8
TraesCS2B01G452200
chr2A
88.256
1405
115
37
1321
2704
684241195
684242570
0.000000e+00
1635.0
9
TraesCS2B01G452200
chr2A
94.828
406
21
0
925
1330
684240753
684241158
8.470000e-178
634.0
10
TraesCS2B01G452200
chr2A
92.754
276
8
6
5722
5989
684247339
684247610
7.280000e-104
388.0
11
TraesCS2B01G452200
chr2A
84.656
378
19
23
135
479
684240222
684240593
2.070000e-89
340.0
12
TraesCS2B01G452200
chr6A
92.675
314
22
1
1639
1952
390566464
390566776
9.150000e-123
451.0
13
TraesCS2B01G452200
chr5A
92.675
314
22
1
1639
1952
193890265
193890577
9.150000e-123
451.0
14
TraesCS2B01G452200
chr5A
92.675
314
22
1
1639
1952
219061202
219060890
9.150000e-123
451.0
15
TraesCS2B01G452200
chr5A
85.027
187
20
6
5398
5580
15448237
15448419
3.690000e-42
183.0
16
TraesCS2B01G452200
chr5A
91.837
49
4
0
4917
4965
477433295
477433343
1.080000e-07
69.4
17
TraesCS2B01G452200
chr3B
92.675
314
21
2
1640
1952
409336760
409336448
9.150000e-123
451.0
18
TraesCS2B01G452200
chr1B
93.885
278
16
1
1675
1952
129378993
129378717
9.280000e-113
418.0
19
TraesCS2B01G452200
chr1B
97.561
41
1
0
4917
4957
328127502
328127542
2.990000e-08
71.3
20
TraesCS2B01G452200
chr3A
93.720
207
12
1
1640
1846
511043985
511044190
5.830000e-80
309.0
21
TraesCS2B01G452200
chr1A
92.754
207
14
1
1640
1846
278490440
278490235
1.260000e-76
298.0
22
TraesCS2B01G452200
chr4D
86.631
187
17
7
5398
5580
499920322
499920140
3.660000e-47
200.0
23
TraesCS2B01G452200
chr7B
86.096
187
18
7
5398
5580
629200420
629200602
1.700000e-45
195.0
24
TraesCS2B01G452200
chr7B
85.027
187
20
7
5398
5580
629184006
629184188
3.690000e-42
183.0
25
TraesCS2B01G452200
chr4A
92.481
133
10
0
1820
1952
666695381
666695249
2.200000e-44
191.0
26
TraesCS2B01G452200
chr5B
97.826
46
1
0
4917
4962
419488068
419488113
4.980000e-11
80.5
27
TraesCS2B01G452200
chr1D
97.561
41
1
0
4917
4957
228806369
228806409
2.990000e-08
71.3
28
TraesCS2B01G452200
chr3D
93.478
46
2
1
4917
4962
5728603
5728559
3.870000e-07
67.6
29
TraesCS2B01G452200
chr3D
93.333
45
3
0
4922
4966
40731702
40731658
3.870000e-07
67.6
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS2B01G452200
chr2B
646209162
646215150
5988
False
5170.5
9354
100.000000
1
5989
2
chr2B.!!$F1
5988
1
TraesCS2B01G452200
chr2D
540814768
540819195
4427
False
3122.0
5662
90.269000
1
4710
2
chr2D.!!$F2
4709
2
TraesCS2B01G452200
chr2D
540824082
540825301
1219
False
1356.0
1356
86.902000
4740
5989
1
chr2D.!!$F1
1249
3
TraesCS2B01G452200
chr2A
684240222
684247610
7388
False
1188.0
2409
91.022333
135
5989
6
chr2A.!!$F1
5854
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
194
224
0.255890
AACTCCCATCCCATGTTCCG
59.744
55.0
0.00
0.00
0.00
4.30
F
435
504
0.331616
CCCCCAACCGAAATCCTCTT
59.668
55.0
0.00
0.00
0.00
2.85
F
1526
1667
0.721718
GTCTTGGTGCACGTCTATGC
59.278
55.0
11.45
0.00
46.32
3.14
F
2185
2334
0.109597
GGTTGTTGGCGAATGCTCTG
60.110
55.0
0.00
0.00
42.25
3.35
F
3422
5238
0.451383
GTGGACGCAATTGCTATGCA
59.549
50.0
26.86
21.89
44.01
3.96
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1533
1675
0.473326
TCCTAGCTACGGAGAGGTCC
59.527
60.000
0.00
0.0
39.88
4.46
R
1629
1771
0.670162
TCCTATAACAGTACGCGGCC
59.330
55.000
12.47
0.0
0.00
6.13
R
2554
2703
1.070134
TGTGAACCCTTCCTGAAGTCG
59.930
52.381
6.19
0.0
36.72
4.18
R
3843
5659
0.374758
CACACACACACACACAGAGC
59.625
55.000
0.00
0.0
0.00
4.09
R
5290
7161
0.036388
CGAAGCTTGGAGTGGGCTAA
60.036
55.000
2.10
0.0
35.06
3.09
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
41
47
1.619057
TGCCACCCTCCATCCATCA
60.619
57.895
0.00
0.00
0.00
3.07
42
48
1.152881
GCCACCCTCCATCCATCAC
60.153
63.158
0.00
0.00
0.00
3.06
194
224
0.255890
AACTCCCATCCCATGTTCCG
59.744
55.000
0.00
0.00
0.00
4.30
200
230
2.619332
CCCATCCCATGTTCCGTGTTTA
60.619
50.000
0.00
0.00
0.00
2.01
201
231
2.682856
CCATCCCATGTTCCGTGTTTAG
59.317
50.000
0.00
0.00
0.00
1.85
203
233
1.979308
TCCCATGTTCCGTGTTTAGGA
59.021
47.619
0.00
0.00
35.69
2.94
204
234
2.372504
TCCCATGTTCCGTGTTTAGGAA
59.627
45.455
0.00
0.00
44.72
3.36
209
239
1.886886
TTCCGTGTTTAGGAACAGCC
58.113
50.000
0.00
0.00
45.86
4.85
210
240
0.759959
TCCGTGTTTAGGAACAGCCA
59.240
50.000
0.00
0.00
45.86
4.75
211
241
1.141254
TCCGTGTTTAGGAACAGCCAA
59.859
47.619
0.00
0.00
45.86
4.52
212
242
2.159382
CCGTGTTTAGGAACAGCCAAT
58.841
47.619
0.00
0.00
45.86
3.16
213
243
2.161609
CCGTGTTTAGGAACAGCCAATC
59.838
50.000
0.00
0.00
45.86
2.67
214
244
2.161609
CGTGTTTAGGAACAGCCAATCC
59.838
50.000
0.00
0.00
45.86
3.01
316
375
0.963355
TTTTCCTTCCCAATCCGCGG
60.963
55.000
22.12
22.12
0.00
6.46
370
430
3.500289
CCCTGATTTCTTTTCTCCCCACA
60.500
47.826
0.00
0.00
0.00
4.17
371
431
3.507622
CCTGATTTCTTTTCTCCCCACAC
59.492
47.826
0.00
0.00
0.00
3.82
407
467
3.612247
TTCCTTGCGCTCCTCAGCC
62.612
63.158
9.73
0.00
43.56
4.85
432
492
1.571773
CCTCCCCCAACCGAAATCCT
61.572
60.000
0.00
0.00
0.00
3.24
435
504
0.331616
CCCCCAACCGAAATCCTCTT
59.668
55.000
0.00
0.00
0.00
2.85
1050
1135
4.135153
GCAGCTTCTCCGAGGCGA
62.135
66.667
0.00
0.00
39.66
5.54
1134
1219
2.911143
CCCCAGCATTACGCCTCT
59.089
61.111
0.00
0.00
44.04
3.69
1229
1314
2.267006
CCACATGCTCTCCACGCT
59.733
61.111
0.00
0.00
0.00
5.07
1233
1318
4.479993
ATGCTCTCCACGCTGCCC
62.480
66.667
0.00
0.00
0.00
5.36
1275
1360
2.957402
TTGCCTTCATGTTCCTCACT
57.043
45.000
0.00
0.00
0.00
3.41
1325
1410
2.615493
GGGAGAAATTCTTCGAGGTGCA
60.615
50.000
0.00
0.00
36.61
4.57
1331
1416
5.525378
AGAAATTCTTCGAGGTGCATATCAC
59.475
40.000
0.00
0.00
39.54
3.06
1388
1521
0.740737
ACGTGCAGAGCAAGCTTTTT
59.259
45.000
0.00
0.00
41.40
1.94
1420
1553
7.928706
ACTACATCCATGCTATAGAAAACTGTC
59.071
37.037
3.21
0.00
0.00
3.51
1519
1660
1.588674
TTACTTGGTCTTGGTGCACG
58.411
50.000
11.45
0.00
0.00
5.34
1525
1666
1.337728
TGGTCTTGGTGCACGTCTATG
60.338
52.381
11.45
0.20
0.00
2.23
1526
1667
0.721718
GTCTTGGTGCACGTCTATGC
59.278
55.000
11.45
0.00
46.32
3.14
1533
1675
1.328680
GTGCACGTCTATGCTCCATTG
59.671
52.381
0.00
0.00
46.28
2.82
1534
1676
0.940126
GCACGTCTATGCTCCATTGG
59.060
55.000
0.00
0.00
42.62
3.16
1629
1771
3.058224
GGAATTTTGGACCTTCTGTCACG
60.058
47.826
0.00
0.00
46.38
4.35
1651
1793
3.427233
GGCCGCGTACTGTTATAGGATAG
60.427
52.174
4.92
0.00
0.00
2.08
1705
1851
8.867112
TTTATGTTCCATGTAGAAGTATCGAC
57.133
34.615
0.00
0.00
0.00
4.20
1719
1865
4.579869
AGTATCGACCTTTTCAGCAATGT
58.420
39.130
0.00
0.00
0.00
2.71
1732
1879
9.844790
CTTTTCAGCAATGTCATAATTCTTGTA
57.155
29.630
0.00
0.00
0.00
2.41
1898
2045
4.997395
ACACAGTGACAAGGTAATGACATC
59.003
41.667
7.81
0.00
0.00
3.06
1928
2075
2.223157
TGCACAGTTTGAACGCTGTTAC
60.223
45.455
0.00
0.00
43.27
2.50
1940
2087
1.266718
CGCTGTTACAACAAGGCATGT
59.733
47.619
0.00
0.00
46.82
3.21
2044
2191
9.023962
TGAAACTGCTATTCTTTGATTGGTATT
57.976
29.630
0.00
0.00
0.00
1.89
2075
2222
4.214971
GCCATATAGACCATGTCTTGCAAG
59.785
45.833
20.81
20.81
40.28
4.01
2098
2245
5.303078
AGAGTGTTCAGAAGCTAAAGACTGA
59.697
40.000
5.85
0.00
37.56
3.41
2104
2251
4.588951
TCAGAAGCTAAAGACTGACTTGGA
59.411
41.667
0.00
0.00
38.98
3.53
2185
2334
0.109597
GGTTGTTGGCGAATGCTCTG
60.110
55.000
0.00
0.00
42.25
3.35
2228
2377
2.418368
TGTGTTGCTTTCTGACAGGT
57.582
45.000
1.81
0.00
0.00
4.00
2268
2417
6.500684
TGCTTACATCTGATTTTCCTTCAC
57.499
37.500
0.00
0.00
0.00
3.18
2270
2419
5.351465
GCTTACATCTGATTTTCCTTCACGA
59.649
40.000
0.00
0.00
0.00
4.35
2271
2420
6.037610
GCTTACATCTGATTTTCCTTCACGAT
59.962
38.462
0.00
0.00
0.00
3.73
2272
2421
7.224753
GCTTACATCTGATTTTCCTTCACGATA
59.775
37.037
0.00
0.00
0.00
2.92
2273
2422
9.098355
CTTACATCTGATTTTCCTTCACGATAA
57.902
33.333
0.00
0.00
0.00
1.75
2274
2423
7.921786
ACATCTGATTTTCCTTCACGATAAA
57.078
32.000
0.00
0.00
0.00
1.40
2275
2424
8.335532
ACATCTGATTTTCCTTCACGATAAAA
57.664
30.769
0.00
0.00
0.00
1.52
2341
2490
5.623673
CGTACCTTTGCACAATTTTGACTAC
59.376
40.000
0.00
0.00
0.00
2.73
2408
2557
7.702772
ACTCGTAAGTCACATATCTGCTTAAAG
59.297
37.037
0.00
0.00
39.48
1.85
2448
2597
4.333926
GCCTTAACACTATTGGAGCTTCTG
59.666
45.833
0.00
0.00
0.00
3.02
2449
2598
5.491982
CCTTAACACTATTGGAGCTTCTGT
58.508
41.667
0.00
0.00
0.00
3.41
2503
2652
1.967066
AGCTTCTATGATCCTGGACCG
59.033
52.381
0.00
0.00
0.00
4.79
2554
2703
4.342359
TGTTACCTGAGGTTAGAGAGTCC
58.658
47.826
10.53
0.00
37.09
3.85
2669
2818
9.121517
CAGCATGACTTTGTGTCTAAATTTTAG
57.878
33.333
9.48
9.48
45.54
1.85
2755
4558
1.132332
TCCCCCTCCCTTTTGTACTCA
60.132
52.381
0.00
0.00
0.00
3.41
2953
4764
3.037851
TGTCAGACATATCTCTGCCCT
57.962
47.619
0.00
0.00
38.07
5.19
3069
4883
3.674997
TCACATCCCTTGCTAGTTTGAC
58.325
45.455
0.00
0.00
0.00
3.18
3238
5052
6.696148
CCGTGATCTTTGTATAGGTTCTACAC
59.304
42.308
0.00
0.00
0.00
2.90
3343
5159
9.959749
TTTACCACACATCATTTCTTTTAGTTC
57.040
29.630
0.00
0.00
0.00
3.01
3422
5238
0.451383
GTGGACGCAATTGCTATGCA
59.549
50.000
26.86
21.89
44.01
3.96
3521
5337
8.151596
TCAGTAATAACCATTGTGTCACTTACA
58.848
33.333
4.27
0.00
35.06
2.41
3530
5346
6.152661
CCATTGTGTCACTTACAATTATGGGT
59.847
38.462
4.27
0.00
44.04
4.51
3599
5415
3.973206
TGGTCCGTAACTCATGTTGAT
57.027
42.857
0.00
0.00
37.59
2.57
3638
5454
2.023673
CATCCAAAAGCTTATCGGGCA
58.976
47.619
0.00
0.00
0.00
5.36
3725
5541
6.939622
AGATTTGTCTCATGTCATGTCTACA
58.060
36.000
12.54
11.73
0.00
2.74
3749
5565
3.933332
GTCGGAGGTCCTTTAAGTTCATG
59.067
47.826
0.00
0.00
0.00
3.07
3825
5641
2.878406
GCCACCATGTTACAAGCGATAT
59.122
45.455
0.00
0.00
0.00
1.63
3836
5652
4.314740
ACAAGCGATATCAAGGTCTCTC
57.685
45.455
3.12
0.00
0.00
3.20
3843
5659
4.388773
CGATATCAAGGTCTCTCTCTCTCG
59.611
50.000
3.12
0.00
0.00
4.04
3844
5660
1.745232
TCAAGGTCTCTCTCTCTCGC
58.255
55.000
0.00
0.00
0.00
5.03
3845
5661
1.280710
TCAAGGTCTCTCTCTCTCGCT
59.719
52.381
0.00
0.00
0.00
4.93
3846
5662
1.670811
CAAGGTCTCTCTCTCTCGCTC
59.329
57.143
0.00
0.00
0.00
5.03
3847
5663
1.204146
AGGTCTCTCTCTCTCGCTCT
58.796
55.000
0.00
0.00
0.00
4.09
3848
5664
1.134401
AGGTCTCTCTCTCTCGCTCTG
60.134
57.143
0.00
0.00
0.00
3.35
3849
5665
1.406887
GGTCTCTCTCTCTCGCTCTGT
60.407
57.143
0.00
0.00
0.00
3.41
3850
5666
1.665679
GTCTCTCTCTCTCGCTCTGTG
59.334
57.143
0.00
0.00
0.00
3.66
3851
5667
1.277842
TCTCTCTCTCTCGCTCTGTGT
59.722
52.381
0.00
0.00
0.00
3.72
3852
5668
1.398041
CTCTCTCTCTCGCTCTGTGTG
59.602
57.143
0.00
0.00
0.00
3.82
3853
5669
1.164411
CTCTCTCTCGCTCTGTGTGT
58.836
55.000
0.00
0.00
0.00
3.72
3854
5670
0.877743
TCTCTCTCGCTCTGTGTGTG
59.122
55.000
0.00
0.00
0.00
3.82
3855
5671
0.595588
CTCTCTCGCTCTGTGTGTGT
59.404
55.000
0.00
0.00
0.00
3.72
3856
5672
0.312102
TCTCTCGCTCTGTGTGTGTG
59.688
55.000
0.00
0.00
0.00
3.82
3857
5673
0.031314
CTCTCGCTCTGTGTGTGTGT
59.969
55.000
0.00
0.00
0.00
3.72
3858
5674
0.249031
TCTCGCTCTGTGTGTGTGTG
60.249
55.000
0.00
0.00
0.00
3.82
3859
5675
0.528466
CTCGCTCTGTGTGTGTGTGT
60.528
55.000
0.00
0.00
0.00
3.72
3860
5676
0.805711
TCGCTCTGTGTGTGTGTGTG
60.806
55.000
0.00
0.00
0.00
3.82
3861
5677
1.083806
CGCTCTGTGTGTGTGTGTGT
61.084
55.000
0.00
0.00
0.00
3.72
3862
5678
0.374758
GCTCTGTGTGTGTGTGTGTG
59.625
55.000
0.00
0.00
0.00
3.82
3863
5679
1.725641
CTCTGTGTGTGTGTGTGTGT
58.274
50.000
0.00
0.00
0.00
3.72
3864
5680
1.394572
CTCTGTGTGTGTGTGTGTGTG
59.605
52.381
0.00
0.00
0.00
3.82
3865
5681
1.155889
CTGTGTGTGTGTGTGTGTGT
58.844
50.000
0.00
0.00
0.00
3.72
3866
5682
0.871057
TGTGTGTGTGTGTGTGTGTG
59.129
50.000
0.00
0.00
0.00
3.82
3867
5683
0.871722
GTGTGTGTGTGTGTGTGTGT
59.128
50.000
0.00
0.00
0.00
3.72
3868
5684
0.871057
TGTGTGTGTGTGTGTGTGTG
59.129
50.000
0.00
0.00
0.00
3.82
3869
5685
0.871722
GTGTGTGTGTGTGTGTGTGT
59.128
50.000
0.00
0.00
0.00
3.72
3870
5686
0.871057
TGTGTGTGTGTGTGTGTGTG
59.129
50.000
0.00
0.00
0.00
3.82
3871
5687
0.871722
GTGTGTGTGTGTGTGTGTGT
59.128
50.000
0.00
0.00
0.00
3.72
3872
5688
0.871057
TGTGTGTGTGTGTGTGTGTG
59.129
50.000
0.00
0.00
0.00
3.82
3873
5689
0.871722
GTGTGTGTGTGTGTGTGTGT
59.128
50.000
0.00
0.00
0.00
3.72
3874
5690
0.871057
TGTGTGTGTGTGTGTGTGTG
59.129
50.000
0.00
0.00
0.00
3.82
3875
5691
0.871722
GTGTGTGTGTGTGTGTGTGT
59.128
50.000
0.00
0.00
0.00
3.72
3876
5692
0.871057
TGTGTGTGTGTGTGTGTGTG
59.129
50.000
0.00
0.00
0.00
3.82
3877
5693
0.871722
GTGTGTGTGTGTGTGTGTGT
59.128
50.000
0.00
0.00
0.00
3.72
3878
5694
0.871057
TGTGTGTGTGTGTGTGTGTG
59.129
50.000
0.00
0.00
0.00
3.82
3879
5695
0.871722
GTGTGTGTGTGTGTGTGTGT
59.128
50.000
0.00
0.00
0.00
3.72
3880
5696
0.871057
TGTGTGTGTGTGTGTGTGTG
59.129
50.000
0.00
0.00
0.00
3.82
3881
5697
0.871722
GTGTGTGTGTGTGTGTGTGT
59.128
50.000
0.00
0.00
0.00
3.72
3882
5698
1.136085
GTGTGTGTGTGTGTGTGTGTC
60.136
52.381
0.00
0.00
0.00
3.67
3883
5699
1.270571
TGTGTGTGTGTGTGTGTGTCT
60.271
47.619
0.00
0.00
0.00
3.41
3884
5700
1.393539
GTGTGTGTGTGTGTGTGTCTC
59.606
52.381
0.00
0.00
0.00
3.36
3959
5801
7.830739
ACAAACTCAAAGTGATGAAGAAAAGT
58.169
30.769
1.53
0.00
0.00
2.66
4229
6071
8.548025
TGGAAGGACATTAGATCTATTGACAAA
58.452
33.333
24.56
3.34
0.00
2.83
4280
6125
3.329743
CATTCGCTGCAGTAATTGAGG
57.670
47.619
16.64
0.83
0.00
3.86
4320
6165
4.018506
TCCATCTCAGGCCATTTTAACTCA
60.019
41.667
5.01
0.00
0.00
3.41
4516
6361
0.383949
TTTCGCTTGTTCAAGTGGCC
59.616
50.000
20.85
0.00
0.00
5.36
4546
6391
7.613585
TGTTTCTGCATTTCATATTTCCACAT
58.386
30.769
0.00
0.00
0.00
3.21
4562
6407
8.907222
ATTTCCACATTACTTGCTTGATTTTT
57.093
26.923
0.00
0.00
0.00
1.94
4766
6620
6.909550
ACTATTCCCTACTGAGATGCTAAG
57.090
41.667
0.00
0.00
0.00
2.18
4767
6621
6.377912
ACTATTCCCTACTGAGATGCTAAGT
58.622
40.000
0.00
0.00
0.00
2.24
4768
6622
7.527796
ACTATTCCCTACTGAGATGCTAAGTA
58.472
38.462
0.00
0.00
0.00
2.24
4974
6838
5.424252
ACGGAGGGAGTATATTTCTTGTCAA
59.576
40.000
0.00
0.00
0.00
3.18
5152
7023
1.079543
CTCCTGCTCCACACCTTCG
60.080
63.158
0.00
0.00
0.00
3.79
5155
7026
3.241530
TGCTCCACACCTTCGCCT
61.242
61.111
0.00
0.00
0.00
5.52
5166
7037
2.361992
TTCGCCTACCGCTCTCCA
60.362
61.111
0.00
0.00
36.73
3.86
5288
7159
3.942739
GTGACGCTCACATCTACTACTC
58.057
50.000
11.62
0.00
46.22
2.59
5290
7161
3.207778
GACGCTCACATCTACTACTCCT
58.792
50.000
0.00
0.00
0.00
3.69
5292
7163
4.778579
ACGCTCACATCTACTACTCCTTA
58.221
43.478
0.00
0.00
0.00
2.69
5293
7164
4.817464
ACGCTCACATCTACTACTCCTTAG
59.183
45.833
0.00
0.00
0.00
2.18
5343
7216
3.057315
GCAATCCTGCTAAGCAAGTTCAA
60.057
43.478
0.00
0.00
45.74
2.69
5352
7225
5.762711
TGCTAAGCAAGTTCAACATGAGTAA
59.237
36.000
0.00
0.00
34.76
2.24
5358
7231
7.584987
AGCAAGTTCAACATGAGTAACATAAC
58.415
34.615
0.00
0.00
37.46
1.89
5362
7235
7.530010
AGTTCAACATGAGTAACATAACATGC
58.470
34.615
0.00
0.00
42.28
4.06
5368
7241
6.317140
ACATGAGTAACATAACATGCCAAGAG
59.683
38.462
0.00
0.00
42.28
2.85
5376
7249
0.037303
ACATGCCAAGAGACCACCAG
59.963
55.000
0.00
0.00
0.00
4.00
5379
7252
1.374758
GCCAAGAGACCACCAGACG
60.375
63.158
0.00
0.00
0.00
4.18
5383
7256
2.233922
CCAAGAGACCACCAGACGTTAT
59.766
50.000
0.00
0.00
0.00
1.89
5389
7264
2.414138
GACCACCAGACGTTATTTTCGG
59.586
50.000
0.00
0.00
0.00
4.30
5390
7265
1.735571
CCACCAGACGTTATTTTCGGG
59.264
52.381
0.00
0.00
33.65
5.14
5481
7356
0.399949
ACAGGTGAAGGGGACTGACA
60.400
55.000
0.00
0.00
42.68
3.58
5486
7361
1.229529
GAAGGGGACTGACAGGGGA
60.230
63.158
7.51
0.00
42.68
4.81
5564
7439
1.138883
GTACTGCATCGACGAGCCA
59.861
57.895
3.01
1.87
0.00
4.75
5648
7527
4.021016
GCTCCATCTTATCCGGTATTCTGT
60.021
45.833
0.00
0.00
0.00
3.41
5664
7543
0.029834
CTGTTGTGGCTGTGCTTGTC
59.970
55.000
0.00
0.00
0.00
3.18
5665
7544
1.360192
GTTGTGGCTGTGCTTGTCC
59.640
57.895
0.00
0.00
0.00
4.02
5666
7545
1.103398
GTTGTGGCTGTGCTTGTCCT
61.103
55.000
0.00
0.00
0.00
3.85
5667
7546
0.395586
TTGTGGCTGTGCTTGTCCTT
60.396
50.000
0.00
0.00
0.00
3.36
5668
7547
1.102809
TGTGGCTGTGCTTGTCCTTG
61.103
55.000
0.00
0.00
0.00
3.61
5669
7548
1.103398
GTGGCTGTGCTTGTCCTTGT
61.103
55.000
0.00
0.00
0.00
3.16
5670
7549
1.102809
TGGCTGTGCTTGTCCTTGTG
61.103
55.000
0.00
0.00
0.00
3.33
5671
7550
1.008079
GCTGTGCTTGTCCTTGTGC
60.008
57.895
0.00
0.00
0.00
4.57
5672
7551
1.656441
CTGTGCTTGTCCTTGTGCC
59.344
57.895
0.00
0.00
0.00
5.01
5673
7552
0.820891
CTGTGCTTGTCCTTGTGCCT
60.821
55.000
0.00
0.00
0.00
4.75
5674
7553
1.102809
TGTGCTTGTCCTTGTGCCTG
61.103
55.000
0.00
0.00
0.00
4.85
5675
7554
1.103398
GTGCTTGTCCTTGTGCCTGT
61.103
55.000
0.00
0.00
0.00
4.00
5679
7558
3.357079
GTCCTTGTGCCTGTGCCG
61.357
66.667
0.00
0.00
36.33
5.69
5700
7579
4.229096
CGCTTGCTGACACAATGTAAAAT
58.771
39.130
0.00
0.00
0.00
1.82
5730
7772
7.381139
CCAACTTTGTCAAACATGTAATACACC
59.619
37.037
0.00
0.00
0.00
4.16
5743
7785
2.604046
ATACACCGAGACTTGCATCC
57.396
50.000
0.00
0.00
0.00
3.51
5783
7828
2.101415
CCGCATTGGAGATCTCAGTGTA
59.899
50.000
23.85
4.71
42.00
2.90
5801
7846
8.763049
TCAGTGTAAGATGTATCTTTGTTCAG
57.237
34.615
11.95
0.98
44.28
3.02
5804
7849
9.209175
AGTGTAAGATGTATCTTTGTTCAGTTC
57.791
33.333
11.95
0.00
44.28
3.01
5880
7929
0.249398
GGGACGTGGTGTATTGCTCT
59.751
55.000
0.00
0.00
0.00
4.09
5945
7994
0.944311
CTGGTGTTCAAGACCGACGG
60.944
60.000
13.61
13.61
36.12
4.79
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
21
22
2.631012
GATGGATGGAGGGTGGCACC
62.631
65.000
28.69
28.69
37.60
5.01
74
88
2.922950
TAACCGACGCGTCCAGCTT
61.923
57.895
31.84
19.15
45.59
3.74
118
132
7.387948
GCCATTTTCTCAAGACTAGTAAGACAA
59.612
37.037
0.00
0.00
0.00
3.18
119
133
6.874134
GCCATTTTCTCAAGACTAGTAAGACA
59.126
38.462
0.00
0.00
0.00
3.41
122
136
7.335422
ACATGCCATTTTCTCAAGACTAGTAAG
59.665
37.037
0.00
0.00
0.00
2.34
194
224
3.153919
TGGATTGGCTGTTCCTAAACAC
58.846
45.455
3.31
0.00
40.45
3.32
200
230
2.365293
GTTTGTTGGATTGGCTGTTCCT
59.635
45.455
3.31
0.00
35.26
3.36
201
231
2.102252
TGTTTGTTGGATTGGCTGTTCC
59.898
45.455
0.00
0.00
0.00
3.62
203
233
3.902881
TTGTTTGTTGGATTGGCTGTT
57.097
38.095
0.00
0.00
0.00
3.16
204
234
3.055530
TGTTTGTTTGTTGGATTGGCTGT
60.056
39.130
0.00
0.00
0.00
4.40
205
235
3.529533
TGTTTGTTTGTTGGATTGGCTG
58.470
40.909
0.00
0.00
0.00
4.85
206
236
3.902881
TGTTTGTTTGTTGGATTGGCT
57.097
38.095
0.00
0.00
0.00
4.75
207
237
4.657055
GTTTGTTTGTTTGTTGGATTGGC
58.343
39.130
0.00
0.00
0.00
4.52
208
238
4.201763
CCGTTTGTTTGTTTGTTGGATTGG
60.202
41.667
0.00
0.00
0.00
3.16
209
239
4.627467
TCCGTTTGTTTGTTTGTTGGATTG
59.373
37.500
0.00
0.00
0.00
2.67
210
240
4.822026
TCCGTTTGTTTGTTTGTTGGATT
58.178
34.783
0.00
0.00
0.00
3.01
211
241
4.457834
TCCGTTTGTTTGTTTGTTGGAT
57.542
36.364
0.00
0.00
0.00
3.41
212
242
3.936372
TCCGTTTGTTTGTTTGTTGGA
57.064
38.095
0.00
0.00
0.00
3.53
213
243
4.377533
GGTTTCCGTTTGTTTGTTTGTTGG
60.378
41.667
0.00
0.00
0.00
3.77
214
244
4.377533
GGGTTTCCGTTTGTTTGTTTGTTG
60.378
41.667
0.00
0.00
0.00
3.33
301
346
2.824041
CACCGCGGATTGGGAAGG
60.824
66.667
35.90
0.02
0.00
3.46
302
347
2.046314
ACACCGCGGATTGGGAAG
60.046
61.111
35.90
12.55
0.00
3.46
304
349
2.191786
AATCACACCGCGGATTGGGA
62.192
55.000
35.90
27.78
32.75
4.37
316
375
1.210722
GGAGGGGAGGAAGAATCACAC
59.789
57.143
0.00
0.00
0.00
3.82
343
402
3.562176
GGAGAAAAGAAATCAGGGAGGCA
60.562
47.826
0.00
0.00
0.00
4.75
384
444
4.803908
GGAGCGCAAGGAAGGGGG
62.804
72.222
11.47
0.00
38.28
5.40
389
449
2.046892
GCTGAGGAGCGCAAGGAA
60.047
61.111
11.47
0.00
34.87
3.36
407
467
2.590092
GGTTGGGGGAGGATGACG
59.410
66.667
0.00
0.00
0.00
4.35
932
1017
1.269448
GTCAGAGCCCAGATCGATCTC
59.731
57.143
25.00
14.12
34.22
2.75
1050
1135
2.408022
GCGAGTATCCAGACGCGT
59.592
61.111
13.85
13.85
43.47
6.01
1055
1140
2.831366
GCGACGGCGAGTATCCAGA
61.831
63.158
18.90
0.00
40.82
3.86
1056
1141
2.353607
GCGACGGCGAGTATCCAG
60.354
66.667
18.90
0.00
40.82
3.86
1087
1172
2.815684
TAGGCCCAGACCACCACGAT
62.816
60.000
0.00
0.00
0.00
3.73
1233
1318
4.078516
GACCCCCTGGACCGAACG
62.079
72.222
0.00
0.00
34.81
3.95
1466
1599
9.294030
CTAAATCTTGCTTATTTAACAAGCCAG
57.706
33.333
5.47
4.20
46.32
4.85
1497
1638
3.146066
GTGCACCAAGACCAAGTAATCA
58.854
45.455
5.22
0.00
0.00
2.57
1526
1667
1.683917
CTACGGAGAGGTCCAATGGAG
59.316
57.143
0.27
0.00
44.18
3.86
1533
1675
0.473326
TCCTAGCTACGGAGAGGTCC
59.527
60.000
0.00
0.00
39.88
4.46
1534
1676
2.572209
ATCCTAGCTACGGAGAGGTC
57.428
55.000
0.00
0.00
33.29
3.85
1606
1748
3.058224
GTGACAGAAGGTCCAAAATTCCG
60.058
47.826
0.00
0.00
46.38
4.30
1629
1771
0.670162
TCCTATAACAGTACGCGGCC
59.330
55.000
12.47
0.00
0.00
6.13
1651
1793
5.964758
TGAAATGGCCACAAAGTATCATTC
58.035
37.500
8.16
0.95
0.00
2.67
1666
1810
7.846644
TGGAACATAAAATCAATGAAATGGC
57.153
32.000
0.00
0.00
0.00
4.40
1705
1851
7.816031
ACAAGAATTATGACATTGCTGAAAAGG
59.184
33.333
0.00
0.00
0.00
3.11
1732
1879
7.774157
AGATAACTCTGAGCAAAATGTGATGAT
59.226
33.333
4.19
0.00
0.00
2.45
1898
2045
5.219768
GCGTTCAAACTGTGCATTATTTACG
60.220
40.000
0.00
0.46
0.00
3.18
1928
2075
4.771590
ATGAACAGTACATGCCTTGTTG
57.228
40.909
12.34
0.00
39.87
3.33
2038
2185
8.610369
TGGTCTATATGGCAAATATCAATACCA
58.390
33.333
0.00
0.00
0.00
3.25
2044
2191
7.921304
AGACATGGTCTATATGGCAAATATCA
58.079
34.615
0.00
0.00
41.51
2.15
2075
2222
5.404066
GTCAGTCTTTAGCTTCTGAACACTC
59.596
44.000
0.00
0.00
38.40
3.51
2115
2264
3.181427
ACCCCACTGTACCTGCAATAAAA
60.181
43.478
0.00
0.00
0.00
1.52
2185
2334
1.337703
TGCTGGTTGTCAATGTCTTGC
59.662
47.619
0.00
0.00
32.11
4.01
2228
2377
6.999950
TGTAAGCAAACTATACTCTGTGGAA
58.000
36.000
0.00
0.00
0.00
3.53
2341
2490
2.956333
TCCCATCAGGTAGTCATACACG
59.044
50.000
0.00
0.00
36.75
4.49
2394
2543
9.565213
CCTTGAGAAAAACTTTAAGCAGATATG
57.435
33.333
0.00
0.00
0.00
1.78
2503
2652
5.507077
TGCGAATATCTAAAATTTCCGTGC
58.493
37.500
0.00
0.00
0.00
5.34
2554
2703
1.070134
TGTGAACCCTTCCTGAAGTCG
59.930
52.381
6.19
0.00
36.72
4.18
2606
2755
1.271102
GTGCGAAATACTTTTGGCCCA
59.729
47.619
0.00
0.00
43.53
5.36
2669
2818
3.636153
ACTGTCTGGAGATTAAAGGCC
57.364
47.619
0.00
0.00
0.00
5.19
2735
2885
1.132332
TGAGTACAAAAGGGAGGGGGA
60.132
52.381
0.00
0.00
0.00
4.81
2736
2886
1.368374
TGAGTACAAAAGGGAGGGGG
58.632
55.000
0.00
0.00
0.00
5.40
2737
2887
3.739401
ATTGAGTACAAAAGGGAGGGG
57.261
47.619
0.00
0.00
39.54
4.79
2953
4764
7.066163
CCAAATCTTATATGCTGTGAGACAACA
59.934
37.037
0.00
0.00
0.00
3.33
3035
4849
2.358898
GGGATGTGATATTGTGCCACAC
59.641
50.000
0.00
0.00
42.65
3.82
3152
4966
5.180117
CGATGAATGAGACAGAACAGGTTTT
59.820
40.000
0.00
0.00
0.00
2.43
3238
5052
6.421377
TGCACATATACAGTGTAAAGCAAG
57.579
37.500
7.16
0.00
39.17
4.01
3321
5137
6.863126
GGTGAACTAAAAGAAATGATGTGTGG
59.137
38.462
0.00
0.00
0.00
4.17
3343
5159
3.219176
ACATCTGAGCCCATTATGGTG
57.781
47.619
10.65
2.55
35.17
4.17
3521
5337
7.710676
TGTGCAAATACAAGTACCCATAATT
57.289
32.000
0.00
0.00
0.00
1.40
3530
5346
7.935520
TCATCTGTTTTGTGCAAATACAAGTA
58.064
30.769
0.00
0.00
41.18
2.24
3599
5415
1.214175
TGCCACTTTCCTTCTGACCAA
59.786
47.619
0.00
0.00
0.00
3.67
3638
5454
3.370953
GGAGCCCATAAGTGACATCTTGT
60.371
47.826
0.00
0.00
0.00
3.16
3725
5541
3.581332
TGAACTTAAAGGACCTCCGACAT
59.419
43.478
0.00
0.00
42.08
3.06
3730
5546
5.167303
AGACATGAACTTAAAGGACCTCC
57.833
43.478
0.00
0.00
0.00
4.30
3749
5565
9.178758
AGAATTGGAATTAGAACCATGTTAGAC
57.821
33.333
0.00
0.00
36.02
2.59
3825
5641
1.280710
AGCGAGAGAGAGAGACCTTGA
59.719
52.381
0.00
0.00
0.00
3.02
3836
5652
0.595588
ACACACACAGAGCGAGAGAG
59.404
55.000
0.00
0.00
0.00
3.20
3843
5659
0.374758
CACACACACACACACAGAGC
59.625
55.000
0.00
0.00
0.00
4.09
3844
5660
1.394572
CACACACACACACACACAGAG
59.605
52.381
0.00
0.00
0.00
3.35
3845
5661
1.270571
ACACACACACACACACACAGA
60.271
47.619
0.00
0.00
0.00
3.41
3846
5662
1.136000
CACACACACACACACACACAG
60.136
52.381
0.00
0.00
0.00
3.66
3847
5663
0.871057
CACACACACACACACACACA
59.129
50.000
0.00
0.00
0.00
3.72
3848
5664
0.871722
ACACACACACACACACACAC
59.128
50.000
0.00
0.00
0.00
3.82
3849
5665
0.871057
CACACACACACACACACACA
59.129
50.000
0.00
0.00
0.00
3.72
3850
5666
0.871722
ACACACACACACACACACAC
59.128
50.000
0.00
0.00
0.00
3.82
3851
5667
0.871057
CACACACACACACACACACA
59.129
50.000
0.00
0.00
0.00
3.72
3852
5668
0.871722
ACACACACACACACACACAC
59.128
50.000
0.00
0.00
0.00
3.82
3853
5669
0.871057
CACACACACACACACACACA
59.129
50.000
0.00
0.00
0.00
3.72
3854
5670
0.871722
ACACACACACACACACACAC
59.128
50.000
0.00
0.00
0.00
3.82
3855
5671
0.871057
CACACACACACACACACACA
59.129
50.000
0.00
0.00
0.00
3.72
3856
5672
0.871722
ACACACACACACACACACAC
59.128
50.000
0.00
0.00
0.00
3.82
3857
5673
0.871057
CACACACACACACACACACA
59.129
50.000
0.00
0.00
0.00
3.72
3858
5674
0.871722
ACACACACACACACACACAC
59.128
50.000
0.00
0.00
0.00
3.82
3859
5675
0.871057
CACACACACACACACACACA
59.129
50.000
0.00
0.00
0.00
3.72
3860
5676
0.871722
ACACACACACACACACACAC
59.128
50.000
0.00
0.00
0.00
3.82
3861
5677
0.871057
CACACACACACACACACACA
59.129
50.000
0.00
0.00
0.00
3.72
3862
5678
0.871722
ACACACACACACACACACAC
59.128
50.000
0.00
0.00
0.00
3.82
3863
5679
1.152510
GACACACACACACACACACA
58.847
50.000
0.00
0.00
0.00
3.72
3864
5680
1.393539
GAGACACACACACACACACAC
59.606
52.381
0.00
0.00
0.00
3.82
3865
5681
1.275010
AGAGACACACACACACACACA
59.725
47.619
0.00
0.00
0.00
3.72
3866
5682
1.927174
GAGAGACACACACACACACAC
59.073
52.381
0.00
0.00
0.00
3.82
3867
5683
1.824852
AGAGAGACACACACACACACA
59.175
47.619
0.00
0.00
0.00
3.72
3868
5684
2.099921
AGAGAGAGACACACACACACAC
59.900
50.000
0.00
0.00
0.00
3.82
3869
5685
2.359214
GAGAGAGAGACACACACACACA
59.641
50.000
0.00
0.00
0.00
3.72
3870
5686
2.621055
AGAGAGAGAGACACACACACAC
59.379
50.000
0.00
0.00
0.00
3.82
3871
5687
2.881513
GAGAGAGAGAGACACACACACA
59.118
50.000
0.00
0.00
0.00
3.72
3872
5688
3.146066
AGAGAGAGAGAGACACACACAC
58.854
50.000
0.00
0.00
0.00
3.82
3873
5689
3.072330
AGAGAGAGAGAGAGACACACACA
59.928
47.826
0.00
0.00
0.00
3.72
3874
5690
3.674997
AGAGAGAGAGAGAGACACACAC
58.325
50.000
0.00
0.00
0.00
3.82
3875
5691
3.582647
AGAGAGAGAGAGAGAGACACACA
59.417
47.826
0.00
0.00
0.00
3.72
3876
5692
4.081420
AGAGAGAGAGAGAGAGAGACACAC
60.081
50.000
0.00
0.00
0.00
3.82
3877
5693
4.096681
AGAGAGAGAGAGAGAGAGACACA
58.903
47.826
0.00
0.00
0.00
3.72
3878
5694
4.404073
AGAGAGAGAGAGAGAGAGAGACAC
59.596
50.000
0.00
0.00
0.00
3.67
3879
5695
4.614475
AGAGAGAGAGAGAGAGAGAGACA
58.386
47.826
0.00
0.00
0.00
3.41
3880
5696
4.892934
AGAGAGAGAGAGAGAGAGAGAGAC
59.107
50.000
0.00
0.00
0.00
3.36
3881
5697
5.103728
AGAGAGAGAGAGAGAGAGAGAGAGA
60.104
48.000
0.00
0.00
0.00
3.10
3882
5698
5.139727
AGAGAGAGAGAGAGAGAGAGAGAG
58.860
50.000
0.00
0.00
0.00
3.20
3883
5699
5.103728
AGAGAGAGAGAGAGAGAGAGAGAGA
60.104
48.000
0.00
0.00
0.00
3.10
3884
5700
5.139727
AGAGAGAGAGAGAGAGAGAGAGAG
58.860
50.000
0.00
0.00
0.00
3.20
3992
5834
6.984474
TCTGTGTAACCACTTTCTGTAAGAAG
59.016
38.462
0.80
0.00
45.96
2.85
4229
6071
8.202461
TCCGTATTTCTTCTATATCCACCAAT
57.798
34.615
0.00
0.00
0.00
3.16
4320
6165
5.905331
TCCTAAATATGTGATGTCCTGGAGT
59.095
40.000
0.00
0.00
0.00
3.85
4420
6265
5.192927
ACATCATCTAATGGCTTTTCCGAA
58.807
37.500
0.00
0.00
37.80
4.30
4484
6329
3.676172
ACAAGCGAAATGATACGACGAAA
59.324
39.130
0.00
0.00
0.00
3.46
4486
6331
2.871133
ACAAGCGAAATGATACGACGA
58.129
42.857
0.00
0.00
0.00
4.20
4516
6361
7.043854
GGAAATATGAAATGCAGAAACATGACG
60.044
37.037
0.00
0.00
0.00
4.35
4679
6533
6.575244
AAAGATATCAACATCCCAGTACCA
57.425
37.500
5.32
0.00
0.00
3.25
4742
6596
7.527796
ACTTAGCATCTCAGTAGGGAATAGTA
58.472
38.462
0.00
0.00
0.00
1.82
4744
6598
6.909550
ACTTAGCATCTCAGTAGGGAATAG
57.090
41.667
0.00
0.00
0.00
1.73
4898
6762
9.807921
TTCAAAGTTACTCCTATTTCCAAATCT
57.192
29.630
0.00
0.00
0.00
2.40
4900
6764
9.588096
AGTTCAAAGTTACTCCTATTTCCAAAT
57.412
29.630
0.00
0.00
0.00
2.32
4909
6773
9.280174
CATGGTTTTAGTTCAAAGTTACTCCTA
57.720
33.333
0.00
0.00
0.00
2.94
4910
6774
7.778382
ACATGGTTTTAGTTCAAAGTTACTCCT
59.222
33.333
0.00
0.00
0.00
3.69
4911
6775
7.937649
ACATGGTTTTAGTTCAAAGTTACTCC
58.062
34.615
0.00
0.00
0.00
3.85
4912
6776
8.617809
TGACATGGTTTTAGTTCAAAGTTACTC
58.382
33.333
0.00
0.00
0.00
2.59
4913
6777
8.514330
TGACATGGTTTTAGTTCAAAGTTACT
57.486
30.769
0.00
0.00
0.00
2.24
4914
6778
8.403236
ACTGACATGGTTTTAGTTCAAAGTTAC
58.597
33.333
0.00
0.00
0.00
2.50
4934
6798
3.581755
CTCCGTTCGGAAATAACTGACA
58.418
45.455
14.79
0.00
33.41
3.58
4974
6838
4.246458
GGTCGCTGTTATCTCTGTCTTTT
58.754
43.478
0.00
0.00
0.00
2.27
5031
6897
8.914011
AGCCCATTTCTACTATTTTGTATTTCC
58.086
33.333
0.00
0.00
0.00
3.13
5044
6915
4.583871
CTCAACTGAAGCCCATTTCTACT
58.416
43.478
0.00
0.00
0.00
2.57
5152
7023
4.208686
CGGTGGAGAGCGGTAGGC
62.209
72.222
0.00
0.00
39.46
3.93
5286
7157
0.107459
GCTTGGAGTGGGCTAAGGAG
60.107
60.000
0.00
0.00
0.00
3.69
5287
7158
0.547712
AGCTTGGAGTGGGCTAAGGA
60.548
55.000
0.00
0.00
34.31
3.36
5288
7159
0.329596
AAGCTTGGAGTGGGCTAAGG
59.670
55.000
0.00
0.00
35.06
2.69
5290
7161
0.036388
CGAAGCTTGGAGTGGGCTAA
60.036
55.000
2.10
0.00
35.06
3.09
5292
7163
2.217038
TCGAAGCTTGGAGTGGGCT
61.217
57.895
2.10
0.00
37.99
5.19
5293
7164
2.035442
GTCGAAGCTTGGAGTGGGC
61.035
63.158
11.84
0.00
0.00
5.36
5343
7216
6.179756
TCTTGGCATGTTATGTTACTCATGT
58.820
36.000
0.00
0.00
39.54
3.21
5352
7225
3.347216
GTGGTCTCTTGGCATGTTATGT
58.653
45.455
0.00
0.00
0.00
2.29
5358
7231
0.325933
TCTGGTGGTCTCTTGGCATG
59.674
55.000
0.00
0.00
0.00
4.06
5362
7235
0.393077
AACGTCTGGTGGTCTCTTGG
59.607
55.000
0.00
0.00
0.00
3.61
5368
7241
2.414138
CCGAAAATAACGTCTGGTGGTC
59.586
50.000
0.00
0.00
0.00
4.02
5376
7249
5.513849
CCAAATTTAGCCCGAAAATAACGTC
59.486
40.000
0.00
0.00
0.00
4.34
5379
7252
5.808540
GGACCAAATTTAGCCCGAAAATAAC
59.191
40.000
0.00
0.00
0.00
1.89
5383
7256
2.563620
GGGACCAAATTTAGCCCGAAAA
59.436
45.455
6.46
0.00
0.00
2.29
5389
7264
5.245301
ACTTTAGTTGGGACCAAATTTAGCC
59.755
40.000
9.47
0.00
37.70
3.93
5390
7265
6.340962
ACTTTAGTTGGGACCAAATTTAGC
57.659
37.500
9.47
0.00
37.70
3.09
5486
7361
2.466523
CTTCCTCTGGCAGCAGCACT
62.467
60.000
10.34
0.00
44.61
4.40
5498
7373
1.614824
CTCCTGGTGGCCTTCCTCT
60.615
63.158
16.22
0.00
0.00
3.69
5564
7439
3.243771
CGAATATAAGCGGGGACTTGACT
60.244
47.826
0.00
0.00
0.00
3.41
5648
7527
0.395586
AAGGACAAGCACAGCCACAA
60.396
50.000
0.00
0.00
0.00
3.33
5665
7544
3.289834
AAGCGGCACAGGCACAAG
61.290
61.111
1.45
0.00
43.71
3.16
5666
7545
3.594775
CAAGCGGCACAGGCACAA
61.595
61.111
1.45
0.00
43.71
3.33
5679
7558
5.691305
TCAATTTTACATTGTGTCAGCAAGC
59.309
36.000
0.00
0.00
0.00
4.01
5730
7772
2.128035
GAATACCGGATGCAAGTCTCG
58.872
52.381
9.46
0.00
0.00
4.04
5743
7785
1.283736
GCCGTACCAACAGAATACCG
58.716
55.000
0.00
0.00
0.00
4.02
5945
7994
0.539438
TTCCACCACCTGAACCATGC
60.539
55.000
0.00
0.00
0.00
4.06
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.