Multiple sequence alignment - TraesCS2B01G452200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G452200 chr2B 100.000 5065 0 0 925 5989 646210086 646215150 0.000000e+00 9354.0
1 TraesCS2B01G452200 chr2B 100.000 534 0 0 1 534 646209162 646209695 0.000000e+00 987.0
2 TraesCS2B01G452200 chr2D 93.766 3818 163 34 925 4710 540815421 540819195 0.000000e+00 5662.0
3 TraesCS2B01G452200 chr2D 86.902 1275 87 49 4740 5989 540824082 540825301 0.000000e+00 1356.0
4 TraesCS2B01G452200 chr2D 86.772 567 21 20 1 531 540814768 540815316 3.110000e-162 582.0
5 TraesCS2B01G452200 chr2D 82.292 96 12 4 4879 4971 413953877 413953784 1.790000e-10 78.7
6 TraesCS2B01G452200 chr2A 90.545 1872 103 28 3878 5728 684245364 684247182 0.000000e+00 2409.0
7 TraesCS2B01G452200 chr2A 95.095 1101 41 6 2754 3843 684244273 684245371 0.000000e+00 1722.0
8 TraesCS2B01G452200 chr2A 88.256 1405 115 37 1321 2704 684241195 684242570 0.000000e+00 1635.0
9 TraesCS2B01G452200 chr2A 94.828 406 21 0 925 1330 684240753 684241158 8.470000e-178 634.0
10 TraesCS2B01G452200 chr2A 92.754 276 8 6 5722 5989 684247339 684247610 7.280000e-104 388.0
11 TraesCS2B01G452200 chr2A 84.656 378 19 23 135 479 684240222 684240593 2.070000e-89 340.0
12 TraesCS2B01G452200 chr6A 92.675 314 22 1 1639 1952 390566464 390566776 9.150000e-123 451.0
13 TraesCS2B01G452200 chr5A 92.675 314 22 1 1639 1952 193890265 193890577 9.150000e-123 451.0
14 TraesCS2B01G452200 chr5A 92.675 314 22 1 1639 1952 219061202 219060890 9.150000e-123 451.0
15 TraesCS2B01G452200 chr5A 85.027 187 20 6 5398 5580 15448237 15448419 3.690000e-42 183.0
16 TraesCS2B01G452200 chr5A 91.837 49 4 0 4917 4965 477433295 477433343 1.080000e-07 69.4
17 TraesCS2B01G452200 chr3B 92.675 314 21 2 1640 1952 409336760 409336448 9.150000e-123 451.0
18 TraesCS2B01G452200 chr1B 93.885 278 16 1 1675 1952 129378993 129378717 9.280000e-113 418.0
19 TraesCS2B01G452200 chr1B 97.561 41 1 0 4917 4957 328127502 328127542 2.990000e-08 71.3
20 TraesCS2B01G452200 chr3A 93.720 207 12 1 1640 1846 511043985 511044190 5.830000e-80 309.0
21 TraesCS2B01G452200 chr1A 92.754 207 14 1 1640 1846 278490440 278490235 1.260000e-76 298.0
22 TraesCS2B01G452200 chr4D 86.631 187 17 7 5398 5580 499920322 499920140 3.660000e-47 200.0
23 TraesCS2B01G452200 chr7B 86.096 187 18 7 5398 5580 629200420 629200602 1.700000e-45 195.0
24 TraesCS2B01G452200 chr7B 85.027 187 20 7 5398 5580 629184006 629184188 3.690000e-42 183.0
25 TraesCS2B01G452200 chr4A 92.481 133 10 0 1820 1952 666695381 666695249 2.200000e-44 191.0
26 TraesCS2B01G452200 chr5B 97.826 46 1 0 4917 4962 419488068 419488113 4.980000e-11 80.5
27 TraesCS2B01G452200 chr1D 97.561 41 1 0 4917 4957 228806369 228806409 2.990000e-08 71.3
28 TraesCS2B01G452200 chr3D 93.478 46 2 1 4917 4962 5728603 5728559 3.870000e-07 67.6
29 TraesCS2B01G452200 chr3D 93.333 45 3 0 4922 4966 40731702 40731658 3.870000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G452200 chr2B 646209162 646215150 5988 False 5170.5 9354 100.000000 1 5989 2 chr2B.!!$F1 5988
1 TraesCS2B01G452200 chr2D 540814768 540819195 4427 False 3122.0 5662 90.269000 1 4710 2 chr2D.!!$F2 4709
2 TraesCS2B01G452200 chr2D 540824082 540825301 1219 False 1356.0 1356 86.902000 4740 5989 1 chr2D.!!$F1 1249
3 TraesCS2B01G452200 chr2A 684240222 684247610 7388 False 1188.0 2409 91.022333 135 5989 6 chr2A.!!$F1 5854


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
194 224 0.255890 AACTCCCATCCCATGTTCCG 59.744 55.0 0.00 0.00 0.00 4.30 F
435 504 0.331616 CCCCCAACCGAAATCCTCTT 59.668 55.0 0.00 0.00 0.00 2.85 F
1526 1667 0.721718 GTCTTGGTGCACGTCTATGC 59.278 55.0 11.45 0.00 46.32 3.14 F
2185 2334 0.109597 GGTTGTTGGCGAATGCTCTG 60.110 55.0 0.00 0.00 42.25 3.35 F
3422 5238 0.451383 GTGGACGCAATTGCTATGCA 59.549 50.0 26.86 21.89 44.01 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1533 1675 0.473326 TCCTAGCTACGGAGAGGTCC 59.527 60.000 0.00 0.0 39.88 4.46 R
1629 1771 0.670162 TCCTATAACAGTACGCGGCC 59.330 55.000 12.47 0.0 0.00 6.13 R
2554 2703 1.070134 TGTGAACCCTTCCTGAAGTCG 59.930 52.381 6.19 0.0 36.72 4.18 R
3843 5659 0.374758 CACACACACACACACAGAGC 59.625 55.000 0.00 0.0 0.00 4.09 R
5290 7161 0.036388 CGAAGCTTGGAGTGGGCTAA 60.036 55.000 2.10 0.0 35.06 3.09 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 47 1.619057 TGCCACCCTCCATCCATCA 60.619 57.895 0.00 0.00 0.00 3.07
42 48 1.152881 GCCACCCTCCATCCATCAC 60.153 63.158 0.00 0.00 0.00 3.06
194 224 0.255890 AACTCCCATCCCATGTTCCG 59.744 55.000 0.00 0.00 0.00 4.30
200 230 2.619332 CCCATCCCATGTTCCGTGTTTA 60.619 50.000 0.00 0.00 0.00 2.01
201 231 2.682856 CCATCCCATGTTCCGTGTTTAG 59.317 50.000 0.00 0.00 0.00 1.85
203 233 1.979308 TCCCATGTTCCGTGTTTAGGA 59.021 47.619 0.00 0.00 35.69 2.94
204 234 2.372504 TCCCATGTTCCGTGTTTAGGAA 59.627 45.455 0.00 0.00 44.72 3.36
209 239 1.886886 TTCCGTGTTTAGGAACAGCC 58.113 50.000 0.00 0.00 45.86 4.85
210 240 0.759959 TCCGTGTTTAGGAACAGCCA 59.240 50.000 0.00 0.00 45.86 4.75
211 241 1.141254 TCCGTGTTTAGGAACAGCCAA 59.859 47.619 0.00 0.00 45.86 4.52
212 242 2.159382 CCGTGTTTAGGAACAGCCAAT 58.841 47.619 0.00 0.00 45.86 3.16
213 243 2.161609 CCGTGTTTAGGAACAGCCAATC 59.838 50.000 0.00 0.00 45.86 2.67
214 244 2.161609 CGTGTTTAGGAACAGCCAATCC 59.838 50.000 0.00 0.00 45.86 3.01
316 375 0.963355 TTTTCCTTCCCAATCCGCGG 60.963 55.000 22.12 22.12 0.00 6.46
370 430 3.500289 CCCTGATTTCTTTTCTCCCCACA 60.500 47.826 0.00 0.00 0.00 4.17
371 431 3.507622 CCTGATTTCTTTTCTCCCCACAC 59.492 47.826 0.00 0.00 0.00 3.82
407 467 3.612247 TTCCTTGCGCTCCTCAGCC 62.612 63.158 9.73 0.00 43.56 4.85
432 492 1.571773 CCTCCCCCAACCGAAATCCT 61.572 60.000 0.00 0.00 0.00 3.24
435 504 0.331616 CCCCCAACCGAAATCCTCTT 59.668 55.000 0.00 0.00 0.00 2.85
1050 1135 4.135153 GCAGCTTCTCCGAGGCGA 62.135 66.667 0.00 0.00 39.66 5.54
1134 1219 2.911143 CCCCAGCATTACGCCTCT 59.089 61.111 0.00 0.00 44.04 3.69
1229 1314 2.267006 CCACATGCTCTCCACGCT 59.733 61.111 0.00 0.00 0.00 5.07
1233 1318 4.479993 ATGCTCTCCACGCTGCCC 62.480 66.667 0.00 0.00 0.00 5.36
1275 1360 2.957402 TTGCCTTCATGTTCCTCACT 57.043 45.000 0.00 0.00 0.00 3.41
1325 1410 2.615493 GGGAGAAATTCTTCGAGGTGCA 60.615 50.000 0.00 0.00 36.61 4.57
1331 1416 5.525378 AGAAATTCTTCGAGGTGCATATCAC 59.475 40.000 0.00 0.00 39.54 3.06
1388 1521 0.740737 ACGTGCAGAGCAAGCTTTTT 59.259 45.000 0.00 0.00 41.40 1.94
1420 1553 7.928706 ACTACATCCATGCTATAGAAAACTGTC 59.071 37.037 3.21 0.00 0.00 3.51
1519 1660 1.588674 TTACTTGGTCTTGGTGCACG 58.411 50.000 11.45 0.00 0.00 5.34
1525 1666 1.337728 TGGTCTTGGTGCACGTCTATG 60.338 52.381 11.45 0.20 0.00 2.23
1526 1667 0.721718 GTCTTGGTGCACGTCTATGC 59.278 55.000 11.45 0.00 46.32 3.14
1533 1675 1.328680 GTGCACGTCTATGCTCCATTG 59.671 52.381 0.00 0.00 46.28 2.82
1534 1676 0.940126 GCACGTCTATGCTCCATTGG 59.060 55.000 0.00 0.00 42.62 3.16
1629 1771 3.058224 GGAATTTTGGACCTTCTGTCACG 60.058 47.826 0.00 0.00 46.38 4.35
1651 1793 3.427233 GGCCGCGTACTGTTATAGGATAG 60.427 52.174 4.92 0.00 0.00 2.08
1705 1851 8.867112 TTTATGTTCCATGTAGAAGTATCGAC 57.133 34.615 0.00 0.00 0.00 4.20
1719 1865 4.579869 AGTATCGACCTTTTCAGCAATGT 58.420 39.130 0.00 0.00 0.00 2.71
1732 1879 9.844790 CTTTTCAGCAATGTCATAATTCTTGTA 57.155 29.630 0.00 0.00 0.00 2.41
1898 2045 4.997395 ACACAGTGACAAGGTAATGACATC 59.003 41.667 7.81 0.00 0.00 3.06
1928 2075 2.223157 TGCACAGTTTGAACGCTGTTAC 60.223 45.455 0.00 0.00 43.27 2.50
1940 2087 1.266718 CGCTGTTACAACAAGGCATGT 59.733 47.619 0.00 0.00 46.82 3.21
2044 2191 9.023962 TGAAACTGCTATTCTTTGATTGGTATT 57.976 29.630 0.00 0.00 0.00 1.89
2075 2222 4.214971 GCCATATAGACCATGTCTTGCAAG 59.785 45.833 20.81 20.81 40.28 4.01
2098 2245 5.303078 AGAGTGTTCAGAAGCTAAAGACTGA 59.697 40.000 5.85 0.00 37.56 3.41
2104 2251 4.588951 TCAGAAGCTAAAGACTGACTTGGA 59.411 41.667 0.00 0.00 38.98 3.53
2185 2334 0.109597 GGTTGTTGGCGAATGCTCTG 60.110 55.000 0.00 0.00 42.25 3.35
2228 2377 2.418368 TGTGTTGCTTTCTGACAGGT 57.582 45.000 1.81 0.00 0.00 4.00
2268 2417 6.500684 TGCTTACATCTGATTTTCCTTCAC 57.499 37.500 0.00 0.00 0.00 3.18
2270 2419 5.351465 GCTTACATCTGATTTTCCTTCACGA 59.649 40.000 0.00 0.00 0.00 4.35
2271 2420 6.037610 GCTTACATCTGATTTTCCTTCACGAT 59.962 38.462 0.00 0.00 0.00 3.73
2272 2421 7.224753 GCTTACATCTGATTTTCCTTCACGATA 59.775 37.037 0.00 0.00 0.00 2.92
2273 2422 9.098355 CTTACATCTGATTTTCCTTCACGATAA 57.902 33.333 0.00 0.00 0.00 1.75
2274 2423 7.921786 ACATCTGATTTTCCTTCACGATAAA 57.078 32.000 0.00 0.00 0.00 1.40
2275 2424 8.335532 ACATCTGATTTTCCTTCACGATAAAA 57.664 30.769 0.00 0.00 0.00 1.52
2341 2490 5.623673 CGTACCTTTGCACAATTTTGACTAC 59.376 40.000 0.00 0.00 0.00 2.73
2408 2557 7.702772 ACTCGTAAGTCACATATCTGCTTAAAG 59.297 37.037 0.00 0.00 39.48 1.85
2448 2597 4.333926 GCCTTAACACTATTGGAGCTTCTG 59.666 45.833 0.00 0.00 0.00 3.02
2449 2598 5.491982 CCTTAACACTATTGGAGCTTCTGT 58.508 41.667 0.00 0.00 0.00 3.41
2503 2652 1.967066 AGCTTCTATGATCCTGGACCG 59.033 52.381 0.00 0.00 0.00 4.79
2554 2703 4.342359 TGTTACCTGAGGTTAGAGAGTCC 58.658 47.826 10.53 0.00 37.09 3.85
2669 2818 9.121517 CAGCATGACTTTGTGTCTAAATTTTAG 57.878 33.333 9.48 9.48 45.54 1.85
2755 4558 1.132332 TCCCCCTCCCTTTTGTACTCA 60.132 52.381 0.00 0.00 0.00 3.41
2953 4764 3.037851 TGTCAGACATATCTCTGCCCT 57.962 47.619 0.00 0.00 38.07 5.19
3069 4883 3.674997 TCACATCCCTTGCTAGTTTGAC 58.325 45.455 0.00 0.00 0.00 3.18
3238 5052 6.696148 CCGTGATCTTTGTATAGGTTCTACAC 59.304 42.308 0.00 0.00 0.00 2.90
3343 5159 9.959749 TTTACCACACATCATTTCTTTTAGTTC 57.040 29.630 0.00 0.00 0.00 3.01
3422 5238 0.451383 GTGGACGCAATTGCTATGCA 59.549 50.000 26.86 21.89 44.01 3.96
3521 5337 8.151596 TCAGTAATAACCATTGTGTCACTTACA 58.848 33.333 4.27 0.00 35.06 2.41
3530 5346 6.152661 CCATTGTGTCACTTACAATTATGGGT 59.847 38.462 4.27 0.00 44.04 4.51
3599 5415 3.973206 TGGTCCGTAACTCATGTTGAT 57.027 42.857 0.00 0.00 37.59 2.57
3638 5454 2.023673 CATCCAAAAGCTTATCGGGCA 58.976 47.619 0.00 0.00 0.00 5.36
3725 5541 6.939622 AGATTTGTCTCATGTCATGTCTACA 58.060 36.000 12.54 11.73 0.00 2.74
3749 5565 3.933332 GTCGGAGGTCCTTTAAGTTCATG 59.067 47.826 0.00 0.00 0.00 3.07
3825 5641 2.878406 GCCACCATGTTACAAGCGATAT 59.122 45.455 0.00 0.00 0.00 1.63
3836 5652 4.314740 ACAAGCGATATCAAGGTCTCTC 57.685 45.455 3.12 0.00 0.00 3.20
3843 5659 4.388773 CGATATCAAGGTCTCTCTCTCTCG 59.611 50.000 3.12 0.00 0.00 4.04
3844 5660 1.745232 TCAAGGTCTCTCTCTCTCGC 58.255 55.000 0.00 0.00 0.00 5.03
3845 5661 1.280710 TCAAGGTCTCTCTCTCTCGCT 59.719 52.381 0.00 0.00 0.00 4.93
3846 5662 1.670811 CAAGGTCTCTCTCTCTCGCTC 59.329 57.143 0.00 0.00 0.00 5.03
3847 5663 1.204146 AGGTCTCTCTCTCTCGCTCT 58.796 55.000 0.00 0.00 0.00 4.09
3848 5664 1.134401 AGGTCTCTCTCTCTCGCTCTG 60.134 57.143 0.00 0.00 0.00 3.35
3849 5665 1.406887 GGTCTCTCTCTCTCGCTCTGT 60.407 57.143 0.00 0.00 0.00 3.41
3850 5666 1.665679 GTCTCTCTCTCTCGCTCTGTG 59.334 57.143 0.00 0.00 0.00 3.66
3851 5667 1.277842 TCTCTCTCTCTCGCTCTGTGT 59.722 52.381 0.00 0.00 0.00 3.72
3852 5668 1.398041 CTCTCTCTCTCGCTCTGTGTG 59.602 57.143 0.00 0.00 0.00 3.82
3853 5669 1.164411 CTCTCTCTCGCTCTGTGTGT 58.836 55.000 0.00 0.00 0.00 3.72
3854 5670 0.877743 TCTCTCTCGCTCTGTGTGTG 59.122 55.000 0.00 0.00 0.00 3.82
3855 5671 0.595588 CTCTCTCGCTCTGTGTGTGT 59.404 55.000 0.00 0.00 0.00 3.72
3856 5672 0.312102 TCTCTCGCTCTGTGTGTGTG 59.688 55.000 0.00 0.00 0.00 3.82
3857 5673 0.031314 CTCTCGCTCTGTGTGTGTGT 59.969 55.000 0.00 0.00 0.00 3.72
3858 5674 0.249031 TCTCGCTCTGTGTGTGTGTG 60.249 55.000 0.00 0.00 0.00 3.82
3859 5675 0.528466 CTCGCTCTGTGTGTGTGTGT 60.528 55.000 0.00 0.00 0.00 3.72
3860 5676 0.805711 TCGCTCTGTGTGTGTGTGTG 60.806 55.000 0.00 0.00 0.00 3.82
3861 5677 1.083806 CGCTCTGTGTGTGTGTGTGT 61.084 55.000 0.00 0.00 0.00 3.72
3862 5678 0.374758 GCTCTGTGTGTGTGTGTGTG 59.625 55.000 0.00 0.00 0.00 3.82
3863 5679 1.725641 CTCTGTGTGTGTGTGTGTGT 58.274 50.000 0.00 0.00 0.00 3.72
3864 5680 1.394572 CTCTGTGTGTGTGTGTGTGTG 59.605 52.381 0.00 0.00 0.00 3.82
3865 5681 1.155889 CTGTGTGTGTGTGTGTGTGT 58.844 50.000 0.00 0.00 0.00 3.72
3866 5682 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3867 5683 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3868 5684 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3869 5685 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3870 5686 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3871 5687 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3872 5688 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3873 5689 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3874 5690 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3875 5691 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3876 5692 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3877 5693 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3878 5694 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3879 5695 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3880 5696 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3881 5697 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3882 5698 1.136085 GTGTGTGTGTGTGTGTGTGTC 60.136 52.381 0.00 0.00 0.00 3.67
3883 5699 1.270571 TGTGTGTGTGTGTGTGTGTCT 60.271 47.619 0.00 0.00 0.00 3.41
3884 5700 1.393539 GTGTGTGTGTGTGTGTGTCTC 59.606 52.381 0.00 0.00 0.00 3.36
3959 5801 7.830739 ACAAACTCAAAGTGATGAAGAAAAGT 58.169 30.769 1.53 0.00 0.00 2.66
4229 6071 8.548025 TGGAAGGACATTAGATCTATTGACAAA 58.452 33.333 24.56 3.34 0.00 2.83
4280 6125 3.329743 CATTCGCTGCAGTAATTGAGG 57.670 47.619 16.64 0.83 0.00 3.86
4320 6165 4.018506 TCCATCTCAGGCCATTTTAACTCA 60.019 41.667 5.01 0.00 0.00 3.41
4516 6361 0.383949 TTTCGCTTGTTCAAGTGGCC 59.616 50.000 20.85 0.00 0.00 5.36
4546 6391 7.613585 TGTTTCTGCATTTCATATTTCCACAT 58.386 30.769 0.00 0.00 0.00 3.21
4562 6407 8.907222 ATTTCCACATTACTTGCTTGATTTTT 57.093 26.923 0.00 0.00 0.00 1.94
4766 6620 6.909550 ACTATTCCCTACTGAGATGCTAAG 57.090 41.667 0.00 0.00 0.00 2.18
4767 6621 6.377912 ACTATTCCCTACTGAGATGCTAAGT 58.622 40.000 0.00 0.00 0.00 2.24
4768 6622 7.527796 ACTATTCCCTACTGAGATGCTAAGTA 58.472 38.462 0.00 0.00 0.00 2.24
4974 6838 5.424252 ACGGAGGGAGTATATTTCTTGTCAA 59.576 40.000 0.00 0.00 0.00 3.18
5152 7023 1.079543 CTCCTGCTCCACACCTTCG 60.080 63.158 0.00 0.00 0.00 3.79
5155 7026 3.241530 TGCTCCACACCTTCGCCT 61.242 61.111 0.00 0.00 0.00 5.52
5166 7037 2.361992 TTCGCCTACCGCTCTCCA 60.362 61.111 0.00 0.00 36.73 3.86
5288 7159 3.942739 GTGACGCTCACATCTACTACTC 58.057 50.000 11.62 0.00 46.22 2.59
5290 7161 3.207778 GACGCTCACATCTACTACTCCT 58.792 50.000 0.00 0.00 0.00 3.69
5292 7163 4.778579 ACGCTCACATCTACTACTCCTTA 58.221 43.478 0.00 0.00 0.00 2.69
5293 7164 4.817464 ACGCTCACATCTACTACTCCTTAG 59.183 45.833 0.00 0.00 0.00 2.18
5343 7216 3.057315 GCAATCCTGCTAAGCAAGTTCAA 60.057 43.478 0.00 0.00 45.74 2.69
5352 7225 5.762711 TGCTAAGCAAGTTCAACATGAGTAA 59.237 36.000 0.00 0.00 34.76 2.24
5358 7231 7.584987 AGCAAGTTCAACATGAGTAACATAAC 58.415 34.615 0.00 0.00 37.46 1.89
5362 7235 7.530010 AGTTCAACATGAGTAACATAACATGC 58.470 34.615 0.00 0.00 42.28 4.06
5368 7241 6.317140 ACATGAGTAACATAACATGCCAAGAG 59.683 38.462 0.00 0.00 42.28 2.85
5376 7249 0.037303 ACATGCCAAGAGACCACCAG 59.963 55.000 0.00 0.00 0.00 4.00
5379 7252 1.374758 GCCAAGAGACCACCAGACG 60.375 63.158 0.00 0.00 0.00 4.18
5383 7256 2.233922 CCAAGAGACCACCAGACGTTAT 59.766 50.000 0.00 0.00 0.00 1.89
5389 7264 2.414138 GACCACCAGACGTTATTTTCGG 59.586 50.000 0.00 0.00 0.00 4.30
5390 7265 1.735571 CCACCAGACGTTATTTTCGGG 59.264 52.381 0.00 0.00 33.65 5.14
5481 7356 0.399949 ACAGGTGAAGGGGACTGACA 60.400 55.000 0.00 0.00 42.68 3.58
5486 7361 1.229529 GAAGGGGACTGACAGGGGA 60.230 63.158 7.51 0.00 42.68 4.81
5564 7439 1.138883 GTACTGCATCGACGAGCCA 59.861 57.895 3.01 1.87 0.00 4.75
5648 7527 4.021016 GCTCCATCTTATCCGGTATTCTGT 60.021 45.833 0.00 0.00 0.00 3.41
5664 7543 0.029834 CTGTTGTGGCTGTGCTTGTC 59.970 55.000 0.00 0.00 0.00 3.18
5665 7544 1.360192 GTTGTGGCTGTGCTTGTCC 59.640 57.895 0.00 0.00 0.00 4.02
5666 7545 1.103398 GTTGTGGCTGTGCTTGTCCT 61.103 55.000 0.00 0.00 0.00 3.85
5667 7546 0.395586 TTGTGGCTGTGCTTGTCCTT 60.396 50.000 0.00 0.00 0.00 3.36
5668 7547 1.102809 TGTGGCTGTGCTTGTCCTTG 61.103 55.000 0.00 0.00 0.00 3.61
5669 7548 1.103398 GTGGCTGTGCTTGTCCTTGT 61.103 55.000 0.00 0.00 0.00 3.16
5670 7549 1.102809 TGGCTGTGCTTGTCCTTGTG 61.103 55.000 0.00 0.00 0.00 3.33
5671 7550 1.008079 GCTGTGCTTGTCCTTGTGC 60.008 57.895 0.00 0.00 0.00 4.57
5672 7551 1.656441 CTGTGCTTGTCCTTGTGCC 59.344 57.895 0.00 0.00 0.00 5.01
5673 7552 0.820891 CTGTGCTTGTCCTTGTGCCT 60.821 55.000 0.00 0.00 0.00 4.75
5674 7553 1.102809 TGTGCTTGTCCTTGTGCCTG 61.103 55.000 0.00 0.00 0.00 4.85
5675 7554 1.103398 GTGCTTGTCCTTGTGCCTGT 61.103 55.000 0.00 0.00 0.00 4.00
5679 7558 3.357079 GTCCTTGTGCCTGTGCCG 61.357 66.667 0.00 0.00 36.33 5.69
5700 7579 4.229096 CGCTTGCTGACACAATGTAAAAT 58.771 39.130 0.00 0.00 0.00 1.82
5730 7772 7.381139 CCAACTTTGTCAAACATGTAATACACC 59.619 37.037 0.00 0.00 0.00 4.16
5743 7785 2.604046 ATACACCGAGACTTGCATCC 57.396 50.000 0.00 0.00 0.00 3.51
5783 7828 2.101415 CCGCATTGGAGATCTCAGTGTA 59.899 50.000 23.85 4.71 42.00 2.90
5801 7846 8.763049 TCAGTGTAAGATGTATCTTTGTTCAG 57.237 34.615 11.95 0.98 44.28 3.02
5804 7849 9.209175 AGTGTAAGATGTATCTTTGTTCAGTTC 57.791 33.333 11.95 0.00 44.28 3.01
5880 7929 0.249398 GGGACGTGGTGTATTGCTCT 59.751 55.000 0.00 0.00 0.00 4.09
5945 7994 0.944311 CTGGTGTTCAAGACCGACGG 60.944 60.000 13.61 13.61 36.12 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.631012 GATGGATGGAGGGTGGCACC 62.631 65.000 28.69 28.69 37.60 5.01
74 88 2.922950 TAACCGACGCGTCCAGCTT 61.923 57.895 31.84 19.15 45.59 3.74
118 132 7.387948 GCCATTTTCTCAAGACTAGTAAGACAA 59.612 37.037 0.00 0.00 0.00 3.18
119 133 6.874134 GCCATTTTCTCAAGACTAGTAAGACA 59.126 38.462 0.00 0.00 0.00 3.41
122 136 7.335422 ACATGCCATTTTCTCAAGACTAGTAAG 59.665 37.037 0.00 0.00 0.00 2.34
194 224 3.153919 TGGATTGGCTGTTCCTAAACAC 58.846 45.455 3.31 0.00 40.45 3.32
200 230 2.365293 GTTTGTTGGATTGGCTGTTCCT 59.635 45.455 3.31 0.00 35.26 3.36
201 231 2.102252 TGTTTGTTGGATTGGCTGTTCC 59.898 45.455 0.00 0.00 0.00 3.62
203 233 3.902881 TTGTTTGTTGGATTGGCTGTT 57.097 38.095 0.00 0.00 0.00 3.16
204 234 3.055530 TGTTTGTTTGTTGGATTGGCTGT 60.056 39.130 0.00 0.00 0.00 4.40
205 235 3.529533 TGTTTGTTTGTTGGATTGGCTG 58.470 40.909 0.00 0.00 0.00 4.85
206 236 3.902881 TGTTTGTTTGTTGGATTGGCT 57.097 38.095 0.00 0.00 0.00 4.75
207 237 4.657055 GTTTGTTTGTTTGTTGGATTGGC 58.343 39.130 0.00 0.00 0.00 4.52
208 238 4.201763 CCGTTTGTTTGTTTGTTGGATTGG 60.202 41.667 0.00 0.00 0.00 3.16
209 239 4.627467 TCCGTTTGTTTGTTTGTTGGATTG 59.373 37.500 0.00 0.00 0.00 2.67
210 240 4.822026 TCCGTTTGTTTGTTTGTTGGATT 58.178 34.783 0.00 0.00 0.00 3.01
211 241 4.457834 TCCGTTTGTTTGTTTGTTGGAT 57.542 36.364 0.00 0.00 0.00 3.41
212 242 3.936372 TCCGTTTGTTTGTTTGTTGGA 57.064 38.095 0.00 0.00 0.00 3.53
213 243 4.377533 GGTTTCCGTTTGTTTGTTTGTTGG 60.378 41.667 0.00 0.00 0.00 3.77
214 244 4.377533 GGGTTTCCGTTTGTTTGTTTGTTG 60.378 41.667 0.00 0.00 0.00 3.33
301 346 2.824041 CACCGCGGATTGGGAAGG 60.824 66.667 35.90 0.02 0.00 3.46
302 347 2.046314 ACACCGCGGATTGGGAAG 60.046 61.111 35.90 12.55 0.00 3.46
304 349 2.191786 AATCACACCGCGGATTGGGA 62.192 55.000 35.90 27.78 32.75 4.37
316 375 1.210722 GGAGGGGAGGAAGAATCACAC 59.789 57.143 0.00 0.00 0.00 3.82
343 402 3.562176 GGAGAAAAGAAATCAGGGAGGCA 60.562 47.826 0.00 0.00 0.00 4.75
384 444 4.803908 GGAGCGCAAGGAAGGGGG 62.804 72.222 11.47 0.00 38.28 5.40
389 449 2.046892 GCTGAGGAGCGCAAGGAA 60.047 61.111 11.47 0.00 34.87 3.36
407 467 2.590092 GGTTGGGGGAGGATGACG 59.410 66.667 0.00 0.00 0.00 4.35
932 1017 1.269448 GTCAGAGCCCAGATCGATCTC 59.731 57.143 25.00 14.12 34.22 2.75
1050 1135 2.408022 GCGAGTATCCAGACGCGT 59.592 61.111 13.85 13.85 43.47 6.01
1055 1140 2.831366 GCGACGGCGAGTATCCAGA 61.831 63.158 18.90 0.00 40.82 3.86
1056 1141 2.353607 GCGACGGCGAGTATCCAG 60.354 66.667 18.90 0.00 40.82 3.86
1087 1172 2.815684 TAGGCCCAGACCACCACGAT 62.816 60.000 0.00 0.00 0.00 3.73
1233 1318 4.078516 GACCCCCTGGACCGAACG 62.079 72.222 0.00 0.00 34.81 3.95
1466 1599 9.294030 CTAAATCTTGCTTATTTAACAAGCCAG 57.706 33.333 5.47 4.20 46.32 4.85
1497 1638 3.146066 GTGCACCAAGACCAAGTAATCA 58.854 45.455 5.22 0.00 0.00 2.57
1526 1667 1.683917 CTACGGAGAGGTCCAATGGAG 59.316 57.143 0.27 0.00 44.18 3.86
1533 1675 0.473326 TCCTAGCTACGGAGAGGTCC 59.527 60.000 0.00 0.00 39.88 4.46
1534 1676 2.572209 ATCCTAGCTACGGAGAGGTC 57.428 55.000 0.00 0.00 33.29 3.85
1606 1748 3.058224 GTGACAGAAGGTCCAAAATTCCG 60.058 47.826 0.00 0.00 46.38 4.30
1629 1771 0.670162 TCCTATAACAGTACGCGGCC 59.330 55.000 12.47 0.00 0.00 6.13
1651 1793 5.964758 TGAAATGGCCACAAAGTATCATTC 58.035 37.500 8.16 0.95 0.00 2.67
1666 1810 7.846644 TGGAACATAAAATCAATGAAATGGC 57.153 32.000 0.00 0.00 0.00 4.40
1705 1851 7.816031 ACAAGAATTATGACATTGCTGAAAAGG 59.184 33.333 0.00 0.00 0.00 3.11
1732 1879 7.774157 AGATAACTCTGAGCAAAATGTGATGAT 59.226 33.333 4.19 0.00 0.00 2.45
1898 2045 5.219768 GCGTTCAAACTGTGCATTATTTACG 60.220 40.000 0.00 0.46 0.00 3.18
1928 2075 4.771590 ATGAACAGTACATGCCTTGTTG 57.228 40.909 12.34 0.00 39.87 3.33
2038 2185 8.610369 TGGTCTATATGGCAAATATCAATACCA 58.390 33.333 0.00 0.00 0.00 3.25
2044 2191 7.921304 AGACATGGTCTATATGGCAAATATCA 58.079 34.615 0.00 0.00 41.51 2.15
2075 2222 5.404066 GTCAGTCTTTAGCTTCTGAACACTC 59.596 44.000 0.00 0.00 38.40 3.51
2115 2264 3.181427 ACCCCACTGTACCTGCAATAAAA 60.181 43.478 0.00 0.00 0.00 1.52
2185 2334 1.337703 TGCTGGTTGTCAATGTCTTGC 59.662 47.619 0.00 0.00 32.11 4.01
2228 2377 6.999950 TGTAAGCAAACTATACTCTGTGGAA 58.000 36.000 0.00 0.00 0.00 3.53
2341 2490 2.956333 TCCCATCAGGTAGTCATACACG 59.044 50.000 0.00 0.00 36.75 4.49
2394 2543 9.565213 CCTTGAGAAAAACTTTAAGCAGATATG 57.435 33.333 0.00 0.00 0.00 1.78
2503 2652 5.507077 TGCGAATATCTAAAATTTCCGTGC 58.493 37.500 0.00 0.00 0.00 5.34
2554 2703 1.070134 TGTGAACCCTTCCTGAAGTCG 59.930 52.381 6.19 0.00 36.72 4.18
2606 2755 1.271102 GTGCGAAATACTTTTGGCCCA 59.729 47.619 0.00 0.00 43.53 5.36
2669 2818 3.636153 ACTGTCTGGAGATTAAAGGCC 57.364 47.619 0.00 0.00 0.00 5.19
2735 2885 1.132332 TGAGTACAAAAGGGAGGGGGA 60.132 52.381 0.00 0.00 0.00 4.81
2736 2886 1.368374 TGAGTACAAAAGGGAGGGGG 58.632 55.000 0.00 0.00 0.00 5.40
2737 2887 3.739401 ATTGAGTACAAAAGGGAGGGG 57.261 47.619 0.00 0.00 39.54 4.79
2953 4764 7.066163 CCAAATCTTATATGCTGTGAGACAACA 59.934 37.037 0.00 0.00 0.00 3.33
3035 4849 2.358898 GGGATGTGATATTGTGCCACAC 59.641 50.000 0.00 0.00 42.65 3.82
3152 4966 5.180117 CGATGAATGAGACAGAACAGGTTTT 59.820 40.000 0.00 0.00 0.00 2.43
3238 5052 6.421377 TGCACATATACAGTGTAAAGCAAG 57.579 37.500 7.16 0.00 39.17 4.01
3321 5137 6.863126 GGTGAACTAAAAGAAATGATGTGTGG 59.137 38.462 0.00 0.00 0.00 4.17
3343 5159 3.219176 ACATCTGAGCCCATTATGGTG 57.781 47.619 10.65 2.55 35.17 4.17
3521 5337 7.710676 TGTGCAAATACAAGTACCCATAATT 57.289 32.000 0.00 0.00 0.00 1.40
3530 5346 7.935520 TCATCTGTTTTGTGCAAATACAAGTA 58.064 30.769 0.00 0.00 41.18 2.24
3599 5415 1.214175 TGCCACTTTCCTTCTGACCAA 59.786 47.619 0.00 0.00 0.00 3.67
3638 5454 3.370953 GGAGCCCATAAGTGACATCTTGT 60.371 47.826 0.00 0.00 0.00 3.16
3725 5541 3.581332 TGAACTTAAAGGACCTCCGACAT 59.419 43.478 0.00 0.00 42.08 3.06
3730 5546 5.167303 AGACATGAACTTAAAGGACCTCC 57.833 43.478 0.00 0.00 0.00 4.30
3749 5565 9.178758 AGAATTGGAATTAGAACCATGTTAGAC 57.821 33.333 0.00 0.00 36.02 2.59
3825 5641 1.280710 AGCGAGAGAGAGAGACCTTGA 59.719 52.381 0.00 0.00 0.00 3.02
3836 5652 0.595588 ACACACACAGAGCGAGAGAG 59.404 55.000 0.00 0.00 0.00 3.20
3843 5659 0.374758 CACACACACACACACAGAGC 59.625 55.000 0.00 0.00 0.00 4.09
3844 5660 1.394572 CACACACACACACACACAGAG 59.605 52.381 0.00 0.00 0.00 3.35
3845 5661 1.270571 ACACACACACACACACACAGA 60.271 47.619 0.00 0.00 0.00 3.41
3846 5662 1.136000 CACACACACACACACACACAG 60.136 52.381 0.00 0.00 0.00 3.66
3847 5663 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3848 5664 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3849 5665 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3850 5666 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3851 5667 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3852 5668 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3853 5669 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3854 5670 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3855 5671 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3856 5672 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3857 5673 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3858 5674 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3859 5675 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3860 5676 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3861 5677 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3862 5678 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3863 5679 1.152510 GACACACACACACACACACA 58.847 50.000 0.00 0.00 0.00 3.72
3864 5680 1.393539 GAGACACACACACACACACAC 59.606 52.381 0.00 0.00 0.00 3.82
3865 5681 1.275010 AGAGACACACACACACACACA 59.725 47.619 0.00 0.00 0.00 3.72
3866 5682 1.927174 GAGAGACACACACACACACAC 59.073 52.381 0.00 0.00 0.00 3.82
3867 5683 1.824852 AGAGAGACACACACACACACA 59.175 47.619 0.00 0.00 0.00 3.72
3868 5684 2.099921 AGAGAGAGACACACACACACAC 59.900 50.000 0.00 0.00 0.00 3.82
3869 5685 2.359214 GAGAGAGAGACACACACACACA 59.641 50.000 0.00 0.00 0.00 3.72
3870 5686 2.621055 AGAGAGAGAGACACACACACAC 59.379 50.000 0.00 0.00 0.00 3.82
3871 5687 2.881513 GAGAGAGAGAGACACACACACA 59.118 50.000 0.00 0.00 0.00 3.72
3872 5688 3.146066 AGAGAGAGAGAGACACACACAC 58.854 50.000 0.00 0.00 0.00 3.82
3873 5689 3.072330 AGAGAGAGAGAGAGACACACACA 59.928 47.826 0.00 0.00 0.00 3.72
3874 5690 3.674997 AGAGAGAGAGAGAGACACACAC 58.325 50.000 0.00 0.00 0.00 3.82
3875 5691 3.582647 AGAGAGAGAGAGAGAGACACACA 59.417 47.826 0.00 0.00 0.00 3.72
3876 5692 4.081420 AGAGAGAGAGAGAGAGAGACACAC 60.081 50.000 0.00 0.00 0.00 3.82
3877 5693 4.096681 AGAGAGAGAGAGAGAGAGACACA 58.903 47.826 0.00 0.00 0.00 3.72
3878 5694 4.404073 AGAGAGAGAGAGAGAGAGAGACAC 59.596 50.000 0.00 0.00 0.00 3.67
3879 5695 4.614475 AGAGAGAGAGAGAGAGAGAGACA 58.386 47.826 0.00 0.00 0.00 3.41
3880 5696 4.892934 AGAGAGAGAGAGAGAGAGAGAGAC 59.107 50.000 0.00 0.00 0.00 3.36
3881 5697 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3882 5698 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3883 5699 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3884 5700 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3992 5834 6.984474 TCTGTGTAACCACTTTCTGTAAGAAG 59.016 38.462 0.80 0.00 45.96 2.85
4229 6071 8.202461 TCCGTATTTCTTCTATATCCACCAAT 57.798 34.615 0.00 0.00 0.00 3.16
4320 6165 5.905331 TCCTAAATATGTGATGTCCTGGAGT 59.095 40.000 0.00 0.00 0.00 3.85
4420 6265 5.192927 ACATCATCTAATGGCTTTTCCGAA 58.807 37.500 0.00 0.00 37.80 4.30
4484 6329 3.676172 ACAAGCGAAATGATACGACGAAA 59.324 39.130 0.00 0.00 0.00 3.46
4486 6331 2.871133 ACAAGCGAAATGATACGACGA 58.129 42.857 0.00 0.00 0.00 4.20
4516 6361 7.043854 GGAAATATGAAATGCAGAAACATGACG 60.044 37.037 0.00 0.00 0.00 4.35
4679 6533 6.575244 AAAGATATCAACATCCCAGTACCA 57.425 37.500 5.32 0.00 0.00 3.25
4742 6596 7.527796 ACTTAGCATCTCAGTAGGGAATAGTA 58.472 38.462 0.00 0.00 0.00 1.82
4744 6598 6.909550 ACTTAGCATCTCAGTAGGGAATAG 57.090 41.667 0.00 0.00 0.00 1.73
4898 6762 9.807921 TTCAAAGTTACTCCTATTTCCAAATCT 57.192 29.630 0.00 0.00 0.00 2.40
4900 6764 9.588096 AGTTCAAAGTTACTCCTATTTCCAAAT 57.412 29.630 0.00 0.00 0.00 2.32
4909 6773 9.280174 CATGGTTTTAGTTCAAAGTTACTCCTA 57.720 33.333 0.00 0.00 0.00 2.94
4910 6774 7.778382 ACATGGTTTTAGTTCAAAGTTACTCCT 59.222 33.333 0.00 0.00 0.00 3.69
4911 6775 7.937649 ACATGGTTTTAGTTCAAAGTTACTCC 58.062 34.615 0.00 0.00 0.00 3.85
4912 6776 8.617809 TGACATGGTTTTAGTTCAAAGTTACTC 58.382 33.333 0.00 0.00 0.00 2.59
4913 6777 8.514330 TGACATGGTTTTAGTTCAAAGTTACT 57.486 30.769 0.00 0.00 0.00 2.24
4914 6778 8.403236 ACTGACATGGTTTTAGTTCAAAGTTAC 58.597 33.333 0.00 0.00 0.00 2.50
4934 6798 3.581755 CTCCGTTCGGAAATAACTGACA 58.418 45.455 14.79 0.00 33.41 3.58
4974 6838 4.246458 GGTCGCTGTTATCTCTGTCTTTT 58.754 43.478 0.00 0.00 0.00 2.27
5031 6897 8.914011 AGCCCATTTCTACTATTTTGTATTTCC 58.086 33.333 0.00 0.00 0.00 3.13
5044 6915 4.583871 CTCAACTGAAGCCCATTTCTACT 58.416 43.478 0.00 0.00 0.00 2.57
5152 7023 4.208686 CGGTGGAGAGCGGTAGGC 62.209 72.222 0.00 0.00 39.46 3.93
5286 7157 0.107459 GCTTGGAGTGGGCTAAGGAG 60.107 60.000 0.00 0.00 0.00 3.69
5287 7158 0.547712 AGCTTGGAGTGGGCTAAGGA 60.548 55.000 0.00 0.00 34.31 3.36
5288 7159 0.329596 AAGCTTGGAGTGGGCTAAGG 59.670 55.000 0.00 0.00 35.06 2.69
5290 7161 0.036388 CGAAGCTTGGAGTGGGCTAA 60.036 55.000 2.10 0.00 35.06 3.09
5292 7163 2.217038 TCGAAGCTTGGAGTGGGCT 61.217 57.895 2.10 0.00 37.99 5.19
5293 7164 2.035442 GTCGAAGCTTGGAGTGGGC 61.035 63.158 11.84 0.00 0.00 5.36
5343 7216 6.179756 TCTTGGCATGTTATGTTACTCATGT 58.820 36.000 0.00 0.00 39.54 3.21
5352 7225 3.347216 GTGGTCTCTTGGCATGTTATGT 58.653 45.455 0.00 0.00 0.00 2.29
5358 7231 0.325933 TCTGGTGGTCTCTTGGCATG 59.674 55.000 0.00 0.00 0.00 4.06
5362 7235 0.393077 AACGTCTGGTGGTCTCTTGG 59.607 55.000 0.00 0.00 0.00 3.61
5368 7241 2.414138 CCGAAAATAACGTCTGGTGGTC 59.586 50.000 0.00 0.00 0.00 4.02
5376 7249 5.513849 CCAAATTTAGCCCGAAAATAACGTC 59.486 40.000 0.00 0.00 0.00 4.34
5379 7252 5.808540 GGACCAAATTTAGCCCGAAAATAAC 59.191 40.000 0.00 0.00 0.00 1.89
5383 7256 2.563620 GGGACCAAATTTAGCCCGAAAA 59.436 45.455 6.46 0.00 0.00 2.29
5389 7264 5.245301 ACTTTAGTTGGGACCAAATTTAGCC 59.755 40.000 9.47 0.00 37.70 3.93
5390 7265 6.340962 ACTTTAGTTGGGACCAAATTTAGC 57.659 37.500 9.47 0.00 37.70 3.09
5486 7361 2.466523 CTTCCTCTGGCAGCAGCACT 62.467 60.000 10.34 0.00 44.61 4.40
5498 7373 1.614824 CTCCTGGTGGCCTTCCTCT 60.615 63.158 16.22 0.00 0.00 3.69
5564 7439 3.243771 CGAATATAAGCGGGGACTTGACT 60.244 47.826 0.00 0.00 0.00 3.41
5648 7527 0.395586 AAGGACAAGCACAGCCACAA 60.396 50.000 0.00 0.00 0.00 3.33
5665 7544 3.289834 AAGCGGCACAGGCACAAG 61.290 61.111 1.45 0.00 43.71 3.16
5666 7545 3.594775 CAAGCGGCACAGGCACAA 61.595 61.111 1.45 0.00 43.71 3.33
5679 7558 5.691305 TCAATTTTACATTGTGTCAGCAAGC 59.309 36.000 0.00 0.00 0.00 4.01
5730 7772 2.128035 GAATACCGGATGCAAGTCTCG 58.872 52.381 9.46 0.00 0.00 4.04
5743 7785 1.283736 GCCGTACCAACAGAATACCG 58.716 55.000 0.00 0.00 0.00 4.02
5945 7994 0.539438 TTCCACCACCTGAACCATGC 60.539 55.000 0.00 0.00 0.00 4.06



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.